RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15592
(294 letters)
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 240 bits (614), Expect = 7e-80
Identities = 90/233 (38%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 28 SLRWRDPNLTEVISFLSNPNNV--IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85
S + L +S L + + + AA ++QH C+ +++ L GI L++LL
Sbjct: 2 SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61
Query: 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145
++ DV R CGALRNL + +++NK + G+P L+ +L++T D E K+ +TG+L
Sbjct: 62 KVQNEDVQRAVCGALRNLVFE--DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119
Query: 146 WNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGW---DPVSAGETCWSTIFRNTSGVLRNAS 202
WNLSS + LK +I + L + +IIIP SGW D A IF N +G LRN S
Sbjct: 120 WNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS 179
Query: 203 SAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQ 255
SAG RK +R C+GLIDSL++ V+ I +K+ ENCVCIL NLS++ +
Sbjct: 180 SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE 232
Score = 26.8 bits (59), Expect = 7.9
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 192 RNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSV-ENCVCILRNL 250
+ +++ ARK++ + G I LL ++K N+ V LRNL
Sbjct: 28 SAAATFIQHECFQKSEARKRVNQLRG-ILKLLQLLKV-------QNEDVQRAVCGALRNL 79
Query: 251 SFRCQE 256
F +
Sbjct: 80 VFEDND 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 222 bits (565), Expect = 2e-68
Identities = 113/271 (41%), Positives = 158/271 (58%), Gaps = 9/271 (3%)
Query: 23 KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLV 82
K WR P L EVI+ L + +K+NAAAYLQHLCY +D K R L GIP LV
Sbjct: 37 KGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLV 96
Query: 83 KLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVT 142
LL H +V ACGAL+N+S+GR + +NK AIKN G+P L+ LLRK D ++ E++T
Sbjct: 97 GLLDHPKKEVHLGACGALKNISFGR-DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVIT 155
Query: 143 GVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETC-----WSTIFRNTSGV 197
G LWNLSS + +K I+D L + + +IIPHSGW+ + W ++ NT+G
Sbjct: 156 GTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC 215
Query: 198 LRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEV 257
LRN SS AR+KLREC+GL+D+L+++V++ I + + +K VENCVC+LRNLS++
Sbjct: 216 LRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275
Query: 258 EDPNYDKHPVVSQSRTSPQAKGKSNIWNRPI 288
+ G S +
Sbjct: 276 IPQAERYQ---EAAPNVANNTGTSPARGYEL 303
Score = 71.9 bits (175), Expect = 2e-14
Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL--------GHESP 90
+ L+N + + A+ L++L D ++ IP LVK L + S
Sbjct: 360 IADLLTNEHERVVKAASGALRNLAV--DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR-KTADAEVKELVTGVLWNLS 149
D + + + N E + ++ GI L+ + + + VL +
Sbjct: 418 DTVISILNTINEVIAE--NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475
Query: 150 SCEDLKKSIIDDGL 163
++L+K + +G
Sbjct: 476 GYKELRKPLEKEGW 489
Score = 70.4 bits (171), Expect = 8e-14
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 18/159 (11%)
Query: 24 CRNSSLRWRDPNLTEVISFLSNP-NNVIKANAAAYLQHLC----YMDDPNKQKTRSLGGI 78
R L ++ + IS L I +A +Q+LC + R +
Sbjct: 298 ARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357
Query: 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTAD---- 134
+ LL +E V + A GALRNL+ + NK I IP L+ L
Sbjct: 358 SAIADLLTNEHERVVKAASGALRNLA---VDARNKELI-GKHAIPNLVKNLPGGQQNSSW 413
Query: 135 ---AEVKELVTGVLWNLSSC-EDLKKSIID-DGLQVVVN 168
+ + + + + + K + + G++ +V
Sbjct: 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVL 452
Score = 48.0 bits (113), Expect = 2e-06
Identities = 36/271 (13%), Positives = 76/271 (28%), Gaps = 53/271 (19%)
Query: 18 PSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-G 76
+L + W + +V+ A L+++ ++K R G
Sbjct: 177 HALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC-LRNVSSERSEARRKLRECDG 235
Query: 77 GIPPLVKLLGHESPD------VFRNACGALRNLSYGRQ---------------------- 108
+ L+ ++ E + N LRNLSY
Sbjct: 236 LVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGT 295
Query: 109 -NDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDD------ 161
+ + + I+LL+++ + E G + NL + I
Sbjct: 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355
Query: 162 GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDS 221
L + + + H + + SG LRN + K+L + +
Sbjct: 356 ALSAIADLLTNEH-------------ERVVKAASGALRNLAVDARN--KELIGKHAIPNL 400
Query: 222 L-LYVVKSAIEKSNIGNKSVENCVCILRNLS 251
+ N +V + + + +
Sbjct: 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVI 431
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 211 bits (539), Expect = 7e-66
Identities = 90/248 (36%), Positives = 144/248 (58%), Gaps = 6/248 (2%)
Query: 34 PNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVF 93
+ + + +LS+ + +A A Y+QH C+ D+ KQ+ LGGI LV LL + +V
Sbjct: 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 94 RNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED 153
+ A GALRNL + + NK + GI ++LLR+T +AE+++ +TG+LWNLSS ++
Sbjct: 62 QAAAGALRNLVFR--STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119
Query: 154 LKKSIIDDGLQVVVNHIIIPHSGWDPVS---AGETCWSTIFRNTSGVLRNASSAGEYARK 210
LK+ +I D L V+ + +IIP SGW + + E +F N +G LRN SSA R+
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA-GRQ 178
Query: 211 KLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNYDKHPVVSQ 270
+R GLIDSL+ V++ + S +KSVENC+C+L NLS+R Y + ++
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
Query: 271 SRTSPQAK 278
+ + ++
Sbjct: 239 NAYTEKSS 246
Score = 74.1 bits (181), Expect = 4e-15
Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL------GHES 89
L ++ L + N+ + + A+ L ++ + + P + +LL S
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNS 390
Query: 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149
D+ +AC +RNL + + ++ + +INL R +A + E +L ++
Sbjct: 391 EDILSSACYTVRNLMAS--QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448
Query: 150 SCEDLKKSI 158
S ++L+ +
Sbjct: 449 SSKELQGVL 457
Score = 67.2 bits (163), Expect = 9e-13
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 14/156 (8%)
Query: 18 PSLNKKCRNSSLRWRDPNLTEVISFLSNP-NNVIKANAAAYLQHLCYMDDPNKQKTRSL- 75
P + S + + ++ + + A LQ+L L
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326
Query: 76 ----GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR- 130
G+P + +LL + DV R+ L N+S ++ R + N + L
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS---RHPLLHRVMGNQVFPEVTRLLTSH 383
Query: 131 ---KTADAEVKELVTGVLWNLSSC-EDLKKSIIDDG 162
+ ++ + NL + L K
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419
Score = 38.3 bits (88), Expect = 0.002
Identities = 34/245 (13%), Positives = 63/245 (25%), Gaps = 34/245 (13%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNL 103
+ + NA L++L D +Q R+ G+ + R ++ N
Sbjct: 153 EVVDPEVFFNATGCLRNLS-SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC 211
Query: 104 SYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIID--- 160
N +A L +A ++ TG N S
Sbjct: 212 M---CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268
Query: 161 -----DGLQVVVNHIIIPH------SGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYAR 209
G + + I + E C + T+ +S +
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL-EACAGALQNLTASKGLMSSGMSQLIG 327
Query: 210 KKLRECEGLIDSL----LYVVKSAIE-----------KSNIGNKSVENCVCILRNLSFRC 254
K + + L VV+S +GN+ +L + +
Sbjct: 328 LKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNT 387
Query: 255 QEVED 259
ED
Sbjct: 388 SNSED 392
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 165 bits (420), Expect = 3e-48
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 24/220 (10%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGALRN 102
+ + ++ A L +L + D NK S+ G + LV L ES D+ + LRN
Sbjct: 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSII-- 159
LS+ R + +K+ ++ G + L+ + + V LWNLS+ C + K I
Sbjct: 270 LSW-RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328
Query: 160 DDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECE 216
D L +V + +T I + G+LRN SS E R+ LRE
Sbjct: 329 DGALAFLVGTLTYRS---------QTNTLAIIESGGGILRNVSSLIATNEDHRQILREN- 378
Query: 217 GLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256
+ +LL +KS V N L NLS R +
Sbjct: 379 NCLQTLLQHLKSHSL------TIVSNACGTLWNLSARNPK 412
Score = 99.3 bits (247), Expect = 1e-23
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 34 PNLTEVISFLSNPNNV-IKANAAAYLQ---HLCYMDDPNKQKTRSLGGIPPLVKLLGHES 89
L +++ S N + I + L+ L ++ ++Q R + L++ L S
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 392
Query: 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149
+ NACG L NLS +N +++ A+ + G + +L NL+ + + L NL
Sbjct: 393 LTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLM 449
Query: 150 SCEDLKK 156
+ K
Sbjct: 450 ANRPAKY 456
Score = 95.0 bits (236), Expect = 3e-22
Identities = 50/284 (17%), Positives = 92/284 (32%), Gaps = 52/284 (18%)
Query: 10 GSQEEFYSPSLNKKCRNS---SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDD 66
GS + S R S + V S LS K + + L + D
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQD 61
Query: 67 PNKQKTRSLGGIPPLVKLL------------GHESPDVFRNACGALRNLSYGRQNDENKR 114
+ R G +P L++LL S + A AL N+ + ++KR
Sbjct: 62 -SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS--QPDDKR 118
Query: 115 AIKNAGGIPLLINLLR-----------------------KTADAEVKELVTGVLWNLSSC 151
+ + LL + VL LS
Sbjct: 119 GRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178
Query: 152 EDLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARK 210
E+ + ++ + GLQ + + + + + + T+ R L N + +
Sbjct: 179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS--ITLRRYAGMALTNLTFGDVANKA 236
Query: 211 KLRECEGLIDSLLYVVKSAIEKSNIGNKSV-ENCVCILRNLSFR 253
L +G + +L+ +KS ++ + + +LRNLS+R
Sbjct: 237 TLCSMKGCMRALVAQLKS-------ESEDLQQVIASVLRNLSWR 273
Score = 85.4 bits (211), Expect = 6e-19
Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 38/230 (16%)
Query: 44 SNPNNVIKANAAAYLQHLC----YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
S P++ L L Y + + + G+ + A
Sbjct: 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 171
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLR----------KTADAEVKELVTGVLWNLS 149
L LS+ ++E++ A+ GG+ + LL+ ++ L NL+
Sbjct: 172 LMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228
Query: 150 SCEDLKKSII---DDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGE 206
+ K+ + ++ +V + + + + VLRN S +
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESED-------------LQQVIASVLRNLSWRAD 275
Query: 207 YARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256
KK G + +L+ ++S ++++ + L NLS C E
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKES-----TLKSVLSALWNLSAHCTE 320
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 163 bits (413), Expect = 4e-48
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 24/220 (10%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNACGALRN 102
+ + ++ A L +L + D NK S+ G + LV L ES D+ + LRN
Sbjct: 94 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSII-- 159
LS+ R + +K+ ++ G + L+ + + V LWNLS+ C + K I
Sbjct: 154 LSW-RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 160 DDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASS---AGEYARKKLRECE 216
D L +V + +T I + G+LRN SS E R+ LRE
Sbjct: 213 DGALAFLVGTLTYRS---------QTNTLAIIESGGGILRNVSSLIATNEDHRQILREN- 262
Query: 217 GLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256
+ +LL +KS V N L NLS R +
Sbjct: 263 NCLQTLLQHLKSHSL------TIVSNACGTLWNLSARNPK 296
Score = 103 bits (257), Expect = 2e-25
Identities = 36/212 (16%), Positives = 76/212 (35%), Gaps = 36/212 (16%)
Query: 59 QHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKN 118
Q Y + + + G+ + A L LS+ ++E++ A+
Sbjct: 15 QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF---DEEHRHAMNE 71
Query: 119 AGGIPLLINLLR----------KTADAEVKELVTGVLWNLSSCEDLKKSII---DDGLQV 165
GG+ + LL+ ++ L NL+ + K+ + ++
Sbjct: 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131
Query: 166 VVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRN-ASSAGEYARKKLRECEGLIDSLLY 224
+V + + + + VLRN + A ++K LRE G + +L+
Sbjct: 132 LVAQLKSESED-------------LQQVIASVLRNLSWRADVNSKKTLREV-GSVKALME 177
Query: 225 VVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256
++S ++++ + L NLS C E
Sbjct: 178 CALEVKKES-----TLKSVLSALWNLSAHCTE 204
Score = 99.1 bits (247), Expect = 4e-24
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 34 PNLTEVISFLSNPNNV-IKANAAAYLQHL---CYMDDPNKQKTRSLGGIPPLVKLLGHES 89
L +++ S N + I + L+++ ++ ++Q R + L++ L S
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276
Query: 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149
+ NACG L NLS N +++ A+ + G + +L NL+ + + L NL
Sbjct: 277 LTIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLM 333
Query: 150 SCEDLKKSIIDDGLQVVVNHIIIP 173
+ K ++ +P
Sbjct: 334 ANRPAKYKDA----NIMSPGSSLP 353
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 156 bits (397), Expect = 2e-44
Identities = 55/256 (21%), Positives = 104/256 (40%), Gaps = 34/256 (13%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 158 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215
Query: 151 CEDLKKSIID-DGLQVVVNHI------IIPHSGW-----------DPVSAG--------- 183
C K +I++ G+Q + H+ ++ + W G
Sbjct: 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275
Query: 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENC 243
+ + +G+L N + + + + G I++L+ V A ++ +I E
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDI----TEPA 330
Query: 244 VCILRNLSFRCQEVED 259
+C LR+L+ R QE E
Sbjct: 331 ICALRHLTSRHQEAEM 346
Score = 110 bits (277), Expect = 2e-27
Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 28/201 (13%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
+ +L + + IP L KLL E V A + LS ++ ++
Sbjct: 2 VVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMR 56
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG-LQVVVNHIIIPHSG 176
+ + ++ ++ T D E G L NLS + +I G + +V + P
Sbjct: 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-- 114
Query: 177 WDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIG 236
++ L N E A+ +R G + ++ ++
Sbjct: 115 -----------DSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNK-------T 155
Query: 237 NKSV-ENCVCILRNLSFRCQE 256
N L+ L++ QE
Sbjct: 156 NVKFLAITTDCLQILAYGNQE 176
Score = 109 bits (273), Expect = 5e-27
Identities = 41/219 (18%), Positives = 83/219 (37%), Gaps = 26/219 (11%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES-PDVFR 94
+ E+ L++ + V+ AA + L + RS + +V+ + + + + R
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-ED 153
G L NLS + E AI +GGIP L+ +L + V L NL E
Sbjct: 79 CTAGTLHNLS---HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEG 134
Query: 154 LKKSIIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKL 212
K ++ G LQ +V + + T+ L+ + + ++ +
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTN-------------VKFLAITTDCLQILAYGNQESKLII 181
Query: 213 RECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
G +L+ ++++ + + +L+ LS
Sbjct: 182 LASGG-PQALVNIMRTYTYEK-----LLWTTSRVLKVLS 214
Score = 102 bits (255), Expect = 1e-24
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 39 VISFLSNPNNV-IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNAC 97
++ + N N+V A L +L GGIP LVK+LG V A
Sbjct: 64 IVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122
Query: 98 GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS-SCEDLKK 156
L NL + K A++ AGG+ ++ LL + + + T L L+ ++ K
Sbjct: 123 TTLHNLLLH--QEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKL 179
Query: 157 SIIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC 215
I+ G Q +VN + + + TS VL+ S + + E
Sbjct: 180 IILASGGPQALVNIM------------RTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEA 226
Query: 216 EGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
G + +L + + + V+NC+ LRNLS
Sbjct: 227 -GGMQALGLHLTDPSQ------RLVQNCLWTLRNLS 255
Score = 92.9 bits (231), Expect = 2e-21
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
L++P+ + N L++L D ++ G + LV+LLG + +V A G
Sbjct: 233 GLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLR-KTADAEVKELVTGVLWNLSSCEDLKKSI 158
L NL+ N +NK + GGI L+ + ++ E L +L+S +
Sbjct: 290 LSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 347
Query: 159 IDDGLQVVVNHIIIPH 174
V H +P
Sbjct: 348 Q----NAVRLHYGLPV 359
Score = 84.1 bits (208), Expect = 2e-18
Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 26/146 (17%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR---- 94
V+ L P++ A L + N R G IP LV+LL D R
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419
Query: 95 ------------------NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE 136
GAL L+ ++ N+ I+ IPL + LL +
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILA---RDVHNRIVIRGLNTIPLFVQLLY-SPIEN 475
Query: 137 VKELVTGVLWNLSSCEDLKKSIIDDG 162
++ + GVL L+ ++ ++I +G
Sbjct: 476 IQRVAAGVLCELAQDKEAAEAIEAEG 501
Score = 84.1 bits (208), Expect = 2e-18
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
T+ I L L N+ R L IP V+LL ++ R
Sbjct: 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRV 479
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149
A G L L+ Q+ E AI+ G L LL + + V VL+ +S
Sbjct: 480 AAGVLCELA---QDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVLFRMS 529
Score = 82.9 bits (205), Expect = 5e-18
Identities = 48/235 (20%), Positives = 75/235 (31%), Gaps = 52/235 (22%)
Query: 44 SNPNNVIKANAAAYLQHLCY---MDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNAC-GA 99
+ I A L+HL + + R G+P +VKLL S A G
Sbjct: 320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT---------------------ADAEVK 138
+RNL+ N ++ G IP L+ LL + E+
Sbjct: 380 IRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 139 ELVTGVLWNLSSCEDLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGV 197
E TG L L+ + I + + + V + P I R +GV
Sbjct: 437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN-------------IQRVAAGV 483
Query: 198 LRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSV-ENCVCILRNLS 251
L + E A + G L ++ S N+ V +L +S
Sbjct: 484 LCELAQDKEAAE-AIEAE-GATAPLTELLHS-------RNEGVATYAAAVLFRMS 529
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 157 bits (397), Expect = 9e-44
Identities = 55/256 (21%), Positives = 104/256 (40%), Gaps = 34/256 (13%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + ++ L +P + + A L +L + K R GG+ +V LL +
Sbjct: 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 154
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 155 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212
Query: 151 CEDLKKSIID-DGLQVVVNHI------IIPHSGW-----------DPVSAG--------- 183
C K +I++ G+Q + H+ ++ + W G
Sbjct: 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 272
Query: 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENC 243
+ + +G+L N + + + + G I++L+ V A ++ +I E
Sbjct: 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDI----TEPA 327
Query: 244 VCILRNLSFRCQEVED 259
+C LR+L+ R QE E
Sbjct: 328 ICALRHLTSRHQEAEM 343
Score = 108 bits (270), Expect = 1e-26
Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 28/199 (14%)
Query: 60 HLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119
+L + + IP L KLL E V A + LS ++ +++
Sbjct: 1 NLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSP 55
Query: 120 GGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG-LQVVVNHIIIPHSGWD 178
+ ++ ++ T D E G L NLS + +I G + +V + P
Sbjct: 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV---- 111
Query: 179 PVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNK 238
++ L N E A+ +R G + ++ ++ N
Sbjct: 112 ---------DSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNK-------TNV 154
Query: 239 SV-ENCVCILRNLSFRCQE 256
L+ L++ QE
Sbjct: 155 KFLAITTDCLQILAYGNQE 173
Score = 105 bits (262), Expect = 2e-25
Identities = 41/219 (18%), Positives = 83/219 (37%), Gaps = 26/219 (11%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFR 94
+ E+ L++ + V+ AA + L + RS + +V+ + + + R
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154
G L NLS + E AI +GGIP L+ +L + V L NL ++
Sbjct: 76 CTAGTLHNLS---HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEG 131
Query: 155 KKSIIDD--GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKL 212
K + GLQ +V + + + T L+ + + ++ +
Sbjct: 132 AKMAVRLAGGLQKMVALL---NKT-NVKFLAITTD---------CLQILAYGNQESKLII 178
Query: 213 RECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
G +L+ ++++ + K + +L+ LS
Sbjct: 179 LASGG-PQALVNIMRTYTYE-----KLLWTTSRVLKVLS 211
Score = 104 bits (260), Expect = 4e-25
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 21/225 (9%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL--GHESPDVFRNAC 97
+ L + + + AA L +L + NK +GGI LV+ + + D+ A
Sbjct: 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328
Query: 98 GALRNLSYGRQNDE-NKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKK 156
ALR+L+ Q E + A++ G+P+++ LL + + + G++ NL+ C
Sbjct: 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388
Query: 157 SIIDDG-------LQVVVNHIIIPHSGW---DPVSAGETCWSTIFRNTSGVLRNASSAGE 206
+ + G L V + + I +G L +
Sbjct: 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DV 447
Query: 207 YARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
+ R +R I + ++ S IE +L L+
Sbjct: 448 HNRIVIRGLNT-IPLFVQLLYSPIE------NIQRVAAGVLCELA 485
Score = 103 bits (257), Expect = 9e-25
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 27/216 (12%)
Query: 39 VISFLSNPNNV-IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNAC 97
++ + N N+V A L +L GGIP LVK+LG V A
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
Query: 98 GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS-SCEDLKK 156
L NL + K A++ AGG+ ++ LL + + + T L L+ ++ K
Sbjct: 120 TTLHNLLLH--QEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 157 SIIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC 215
I+ G Q +VN + + + TS VL+ S + + E
Sbjct: 177 IILASGGPQALVNIM------------RTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEA 223
Query: 216 EGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
G + +L + + V+NC+ LRNLS
Sbjct: 224 -GGMQALGLHLTDP------SQRLVQNCLWTLRNLS 252
Score = 88.8 bits (220), Expect = 6e-20
Identities = 45/208 (21%), Positives = 69/208 (33%), Gaps = 41/208 (19%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR---- 94
V+ L P++ A L + N R G IP LV+LL D R
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 95 ------------------NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE 136
GAL L+ ++ N+ I+ IPL + LL +
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILA---RDVHNRIVIRGLNTIPLFVQLLY-SPIEN 472
Query: 137 VKELVTGVLWNLSSCEDLKKSIIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTS 195
++ + GVL L+ ++ ++I +G + + HS + A
Sbjct: 473 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL---HSR-NEGVATYAAA-------- 520
Query: 196 GVLRNASSAGEYARKKLRECEGLIDSLL 223
VL S KK E L SL
Sbjct: 521 -VLFRMSEDKPQDYKKRLSVE-LTSSLF 546
Score = 84.2 bits (208), Expect = 2e-18
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 23 KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLV 82
+ + R F+ H+ D N+ R L IP V
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 463
Query: 83 KLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVT 142
+LL ++ R A G L L+ Q+ E AI+ G L LL + + V
Sbjct: 464 QLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAA 519
Query: 143 GVLWNLSS 150
VL+ +S
Sbjct: 520 AVLFRMSE 527
Score = 36.5 bits (84), Expect = 0.010
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 3/67 (4%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
L + N + AAA L + Q + + L E A
Sbjct: 504 TELLHSRNEGVATYAAAVLFRMSE---DKPQDYKKRLSVELTSSLFRTEPMAWNETADLG 560
Query: 100 LRNLSYG 106
L + G
Sbjct: 561 LDIGAQG 567
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 157 bits (399), Expect = 9e-44
Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 34/256 (13%)
Query: 31 WRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
++ + +++ L +P + + +A L +L + K R GG+ +V LL +
Sbjct: 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 290
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
L+ L+YG N E+K I +GG L+N++R ++ + VL LS
Sbjct: 291 KFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 151 CEDLKKSIIDDG-LQVVVNHIIIPHSGWDPVSAG-------------------------- 183
C K +I++ G +Q + H+ P
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 408
Query: 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENC 243
+ + +G+L N + + + + G I++L+ V A ++ +I E
Sbjct: 409 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDI----TEPA 463
Query: 244 VCILRNLSFRCQEVED 259
+C LR+L+ R Q+ E
Sbjct: 464 ICALRHLTSRHQDAEM 479
Score = 107 bits (267), Expect = 5e-26
Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 27/217 (12%)
Query: 44 SNPNNVIK-ANAAAYLQHLCY-MDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALR 101
++P NV + A + L+H + + + IP L KLL E V A +
Sbjct: 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVH 175
Query: 102 NLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDD 161
LS ++ +++ + ++ ++ T D E +G L NLS + +I
Sbjct: 176 QLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS 233
Query: 162 G-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLID 220
G + +VN + P ++ + L N E A+ +R G +
Sbjct: 234 GGIPALVNMLGSPV-------------DSVLFHAITTLHNLLLHQEGAKMAVRLA-GGLQ 279
Query: 221 SLLYVVKSAIEKSNIGNKSV-ENCVCILRNLSFRCQE 256
++ ++ N L+ L++ QE
Sbjct: 280 KMVALLNK-------TNVKFLAITTDCLQILAYGNQE 309
Score = 105 bits (262), Expect = 2e-25
Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 26/219 (11%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES-PDVFR 94
+ E+ L++ + V+ AA + L + RS + +V+ + + + + R
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154
G L NLS + E AI +GGIP L+N+L + V L NL ++
Sbjct: 212 CTSGTLHNLS---HHREGLLAIFKSGGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEG 267
Query: 155 KKSIIDD--GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKL 212
K + GLQ +V + + + T L+ + + ++ +
Sbjct: 268 AKMAVRLAGGLQKMVALL---NKT-NVKFLAITTD---------CLQILAYGNQESKLII 314
Query: 213 RECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
G +L+ I ++ K + +L+ LS
Sbjct: 315 LASGG-PQALV-----NIMRTYTYEKLLWTTSRVLKVLS 347
Score = 102 bits (256), Expect = 1e-24
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 25/215 (11%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
++ + N N+V A + H GGIP LV +LG V +A
Sbjct: 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAIT 256
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS-SCEDLKKS 157
L NL + K A++ AGG+ ++ LL + + + T L L+ ++ K
Sbjct: 257 TLHNLLLH--QEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 158 IIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECE 216
I+ G Q +VN + + + TS VL+ S + + E
Sbjct: 314 ILASGGPQALVNIM------------RTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEA- 359
Query: 217 GLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
G + +L + + V+NC+ LRNLS
Sbjct: 360 GGMQALGLHLTDP------SQRLVQNCLWTLRNLS 388
Score = 95.1 bits (236), Expect = 4e-22
Identities = 51/233 (21%), Positives = 84/233 (36%), Gaps = 39/233 (16%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
L++P+ + N L++L D ++ G + LV+LLG + +V A G
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLR-KTADAEVKELVTGVLWNLSS----CEDL 154
L NL+ N +NK + GGI L+ + ++ E L +L+S E
Sbjct: 423 LSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMA 480
Query: 155 KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214
+ ++ VV ++ P S W + A T G++RN + LRE
Sbjct: 481 QNAVRLHYGLPVVVKLLHPPSHWPLIKA-----------TVGLIRNLALCPAN-HAPLRE 528
Query: 215 CEG---LIDSLLY-----VVKSAIEKSNIGNKS--------VENCVCILRNLS 251
L+ LL + VE C L L+
Sbjct: 529 QGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA 580
Score = 88.9 bits (220), Expect = 6e-20
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 20/143 (13%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
V+ L P++ A L + N R G IP LV+LL D R
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552
Query: 99 ALRNLSYGR-------------------QNDENKRAIKNAGGIPLLINLLRKTADAEVKE 139
+ ++ N+ I+ IPL + LL + ++
Sbjct: 553 GGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY-SPIENIQR 611
Query: 140 LVTGVLWNLSSCEDLKKSIIDDG 162
+ GVL L+ ++ ++I +G
Sbjct: 612 VAAGVLCELAQDKEAAEAIEAEG 634
Score = 86.2 bits (213), Expect = 4e-19
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 6/139 (4%)
Query: 23 KCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLV 82
+ + R F+ A H+ D N+ R L IP V
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599
Query: 83 KLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVT 142
+LL ++ R A G L L+ Q+ E AI+ G L LL + + V
Sbjct: 600 QLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAA 655
Query: 143 GVLWNLSS--CEDLKKSII 159
VL+ +S +D KK +
Sbjct: 656 AVLFRMSEDKPQDYKKRLS 674
Score = 82.0 bits (202), Expect = 1e-17
Identities = 58/274 (21%), Positives = 87/274 (31%), Gaps = 58/274 (21%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNK---QKTRSLGGIPPLVKLLGHESPDVFRNAC-GA 99
+ I A L+HL + R G+P +VKLL S A G
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT---------------------ADAEVK 138
+RNL+ N ++ G IP L+ LL + E+
Sbjct: 513 IRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 139 ELVTGVLWNLSSCEDLKKSIID-DGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGV 197
E TG L L+ + I + + + V + P I R +GV
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN-------------IQRVAAGV 616
Query: 198 LRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSV-ENCVCILRNLSFRCQE 256
L + E A + G L ++ S N+ V +L +S
Sbjct: 617 LCELAQDKEAAE-AIEAE-GATAPLTELLHS-------RNEGVATYAAAVLFRMS----- 662
Query: 257 VEDPNYDKHPVVSQSRTSPQAKGKSNIWNRPIDL 290
ED D +S TS + + WN DL
Sbjct: 663 -EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDL 695
Score = 65.4 bits (159), Expect = 4e-12
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
+ L +P I+ AA L L D + + G PL +LL + V A
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 657
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154
L +S E+K L + L +T E L + E L
Sbjct: 658 LFRMS------EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPL 706
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 115 bits (290), Expect = 2e-31
Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
+ L++P+ +A L + + Q G +P LV+LL + + + A A
Sbjct: 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSI 158
L N++ G +E +A+ +AG +P L+ LL + + ++ + L N++S + +++
Sbjct: 78 LSNIASG--GNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 159 IDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEG 217
ID G L +V + S + E W L N +S G ++ ++E G
Sbjct: 135 IDAGALPALVQLL----SSPNEQILQEALW---------ALSNIASGGNEQKQAVKEA-G 180
Query: 218 LIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
++ L + K + L L
Sbjct: 181 ALEKLEQLQSHE------NEKIQKEAQEALEKLQ 208
Score = 95.0 bits (237), Expect = 1e-23
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
++ LS+PN I A L ++ + Q G +P LV+LL + + + A
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
AL N++ G +E K+A+K AG + L L + ++++ L L S
Sbjct: 161 ALSNIASG--GNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209
Score = 42.2 bits (100), Expect = 6e-05
Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 25/149 (16%)
Query: 111 ENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDG-LQVVVN 168
+ + +P ++ L + D + + L ++S + +++ID G L +V
Sbjct: 3 GSHHHHHHGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 169 HIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKS 228
+ P+ I + L N +S G + + + G + +L+ ++ S
Sbjct: 62 LLSSPNEQ-------------ILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSS 107
Query: 229 AIEKSNIGNKSV-ENCVCILRNLSFRCQE 256
N+ + + + L N++ E
Sbjct: 108 -------PNEQILQEALWALSNIASGGNE 129
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 109 bits (275), Expect = 7e-29
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
+ LS+PN I A L ++ + Q G +P LV+LL + + + A A
Sbjct: 60 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 119
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI 158
L N++ G +E +A+ +AG +P L+ LL + + ++ + L N++S + +++
Sbjct: 120 LSNIASG--GNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 176
Query: 159 IDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEG 217
ID G L +V + P+ I + L N +S G ++ ++E G
Sbjct: 177 IDAGALPALVQLLSSPNEQ-------------ILQEALWALSNIASGGNEQKQAVKEA-G 222
Query: 218 LIDSLLYVVKSAIEKSNIGNKSV-ENCVCILRNLS 251
++ L + N+ + + L L
Sbjct: 223 ALEKLEQLQSH-------ENEKIQKEAQEALEKLQ 250
Score = 103 bits (258), Expect = 2e-26
Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 31/217 (14%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
L++ + + +A + + Q G +P LV+LL + + + A A
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSII 159
L N++ G +E +A+ +AG +P L+ LL + ++ + L N++S + + +
Sbjct: 78 LSNIASG--GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAV 134
Query: 160 DD--GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEG 217
D L +V + S + E W L N +S G + + +
Sbjct: 135 IDAGALPALVQLL---SSP-NEQILQEALW---------ALSNIASGGNEQIQAVIDAGA 181
Query: 218 ---LIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
L+ LL I ++ + L N++
Sbjct: 182 LPALVQ-LLSSPNEQI---------LQEALWALSNIA 208
Score = 92.7 bits (231), Expect = 2e-22
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
++ LS+PN I A L ++ + Q G +P LV+LL + + + A
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 202
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
AL N++ G +E K+A+K AG + L L + ++++ L L S
Sbjct: 203 ALSNIASG--GNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 251
Score = 87.3 bits (217), Expect = 1e-20
Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 31/194 (15%)
Query: 68 NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLIN 127
+ +P + + L + +A + +E +A+ +AG +P L+
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQ 61
Query: 128 LLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPH-----SGWDPVSA 182
LL + + ++ + L N++S + + Q V++ +P S +
Sbjct: 62 LLS-SPNEQILQEALWALSNIASGGNEQI-------QAVIDAGALPALVQLLSSPNEQIL 113
Query: 183 GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVEN 242
E W L N +S G + + + G + +L+ ++ S E + ++
Sbjct: 114 QEALW---------ALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNE------QILQE 157
Query: 243 CVCILRNLSFRCQE 256
+ L N++ E
Sbjct: 158 ALWALSNIASGGNE 171
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 89.6 bits (222), Expect = 2e-20
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
L + + A+A L +L + Q G LV+LL H V A A
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSI 158
+ N+ G +D + I N + L++LL + +K+ + N+++ +++
Sbjct: 258 VGNIVTG--DDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNITAGNRAQIQTV 314
Query: 159 IDDGL 163
ID +
Sbjct: 315 IDANI 319
Score = 88.8 bits (220), Expect = 4e-20
Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 24/219 (10%)
Query: 40 ISFLSNPNNV-IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
+ S N + + NA L +LC P + + + L LL DV +AC
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED-LKKS 157
AL LS G ++ +A+ +AG L+ LL D +V + N+ + +D +
Sbjct: 215 ALSYLSDG--PNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQV 271
Query: 158 IIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEG 217
I++ + H++ S E CW + N ++ + + +
Sbjct: 272 ILNCSALQSLLHLL---SSPKESIKKEACW---------TISNITAGNRAQIQTVIDA-N 318
Query: 218 LIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256
+ +L+ ++++A ++ + + N +
Sbjct: 319 IFPALISILQTAEFRTR------KEAAWAITNATSGGSA 351
Score = 83.8 bits (207), Expect = 2e-18
Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 35/243 (14%)
Query: 22 KKCRNSSLRWRDPNLTEVI----------SFLSNPNNV-IKANAAAYLQHLCYMDDPNKQ 70
+K R + +P + EVI FL N ++ +A L ++ + +
Sbjct: 42 QKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101
Query: 71 KTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR 130
G +P ++LL E DV A AL N++ + + + + +P L+ L
Sbjct: 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD--STMCRDYVLDCNILPPLLQLFS 159
Query: 131 KTADAEVKELVTGVLWNLSSCEDLKKSIIDD--GLQVVVNHIIIPHSGWDPVSAGETCWS 188
K + L NL + L V+ + D + CW
Sbjct: 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL---FVS-DTDVLADACW- 214
Query: 189 TIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILR 248
L S + + + G+ L+ ++ K V + +
Sbjct: 215 --------ALSYLSDGPNDKIQAVIDA-GVCRRLVELLMHNDY------KVVSPALRAVG 259
Query: 249 NLS 251
N+
Sbjct: 260 NIV 262
Score = 80.7 bits (199), Expect = 2e-17
Identities = 24/136 (17%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
++ L + + + + A + ++ DD Q + + L+ LL + + AC
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSI 158
+ N++ G N + + +A P LI++L +TA+ ++ + N +S
Sbjct: 299 TISNITAG--NRAQIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGS----- 350
Query: 159 IDDGLQVVVNHIIIPH 174
+ ++ +V I
Sbjct: 351 -AEQIKYLVELGCIKP 365
Score = 79.9 bits (197), Expect = 5e-17
Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 17/184 (9%)
Query: 68 NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLIN 127
N + +++++ +SP+ +A R L N I G + +
Sbjct: 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE 71
Query: 128 LLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCW 187
L++ + ++ VL N++S ++V+ +P + + +
Sbjct: 72 FLKRKENCTLQFESAWVLTNIASGN-------SLQTRIVIQAGAVPIF----IELLSSEF 120
Query: 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCIL 247
+ L N + R + +C ++ LL + + N V L
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMT-----RNAVWAL 174
Query: 248 RNLS 251
NL
Sbjct: 175 SNLC 178
Score = 70.7 bits (173), Expect = 6e-14
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 2/135 (1%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
L ++ LS+P IK A + ++ + Q P L+ +L +
Sbjct: 278 LQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK 155
A A+ N + G + E + + G I L +LL D+++ ++ L N+ + +
Sbjct: 338 AAWAITNATSG-GSAEQIKYLVELGCIKPLCDLLT-VMDSKIVQVALNGLENILRLGEQE 395
Query: 156 KSIIDDGLQVVVNHI 170
G+ I
Sbjct: 396 AKRNGTGINPYCALI 410
Score = 29.1 bits (65), Expect = 1.7
Identities = 9/74 (12%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRS-----------LGGIPPLVKLLGHE 88
L+ ++ I A L+++ + + ++ + G+ + L HE
Sbjct: 367 CDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE 426
Query: 89 SPDVFRNACGALRN 102
+ ++++ A + +
Sbjct: 427 NQEIYQKAFDLIEH 440
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 88.9 bits (220), Expect = 4e-20
Identities = 40/227 (17%), Positives = 94/227 (41%), Gaps = 22/227 (9%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
L ++ L + + + A++ + +L + + G +P LVKLLG +
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDL 154
A A+ N+ G DE + + +AG + + +LL +++ T + N+++ +D
Sbjct: 294 ALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQ 350
Query: 155 KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214
+ +++ GL V ++ S D + E W + N +S G +
Sbjct: 351 IQQVVNHGL---VPFLVGVLSKADFKTQKEAAW---------AITNYTSGGTVEQIVYLV 398
Query: 215 CEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPN 261
G+I+ L+ ++ + K ++ + + N+ +++ +
Sbjct: 399 HCGIIEPLMNLLSAK------DTKIIQVILDAISNIFQAAEKLGETE 439
Score = 85.8 bits (212), Expect = 5e-19
Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 28/222 (12%)
Query: 36 LTEVISFLSNPNNV-----IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
+ +++ L+ P+ N L +LC +P +P LV+LL H P
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS 150
+V ++C A+ L+ G +E + G +P L+ LL + + + N+ +
Sbjct: 247 EVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVT 303
Query: 151 CED-LKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYAR 209
D + +ID G V ++ + E W + N ++ +
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLL---TNPKTNIQKEATW---------TMSNITAGRQDQI 351
Query: 210 KKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
+++ GL+ L+ V+ A K+ + + N +
Sbjct: 352 QQVVNH-GLVPFLVGVLSKADF------KTQKEAAWAITNYT 386
Score = 75.1 bits (184), Expect = 2e-15
Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 22/235 (9%)
Query: 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHL-CYMDDPNKQKTRSLGGIPPLVKL 84
S+ + ++ +++ +++ N + A + L P G IP V
Sbjct: 49 GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF 108
Query: 85 LGH-ESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTG 143
LG + + + AL N++ G E +A+ + G IP I+LL A + E
Sbjct: 109 LGKTDCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVW 165
Query: 144 VLWNLSS-CEDLKKSIIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNA 201
L N++ + +I G + ++ + +P RN + L N
Sbjct: 166 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY--------LRNLTWTLSNL 217
Query: 202 SSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQE 256
+ L E ++ +L+ ++ + + + + L+ E
Sbjct: 218 CR-NKNPAPPLDAVEQILPTLVRLLHHNDP------EVLADSCWAISYLTDGPNE 265
Score = 74.7 bits (183), Expect = 3e-15
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 14/188 (7%)
Query: 64 MDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIP 123
M D + + +VK + + + A A R L R+ I AG IP
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLS-REKQPPIDNIIRAGLIP 103
Query: 124 LLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAG 183
++ L KT + ++ L N++S + + VV+ IP +S
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGT-------SEQTKAVVDGGAIPA----FISLL 152
Query: 184 ETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENC 243
+ + I L N + G R + + G ID LL ++ + S + + N
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLAVP-DLSTLACGYLRNL 210
Query: 244 VCILRNLS 251
L NL
Sbjct: 211 TWTLSNLC 218
Score = 72.7 bits (178), Expect = 1e-14
Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 38/245 (15%)
Query: 23 KCRNSSLRWRDPNLTEVIS---------FLSNPNNV-IKANAAAYLQHLCYMDDPNKQKT 72
R R + P + +I FL + I+ +A L ++ +
Sbjct: 80 AARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139
Query: 73 RSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLR-- 130
G IP + LL + A AL N++ + + G I L+ LL
Sbjct: 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD--GSAFRDLVIKHGAIDPLLALLAVP 197
Query: 131 --KTADAEVKELVTGVLWNLSSCEDLKKSI--IDDGLQVVVNHIIIPHSGWDPVSAGETC 186
T +T L NL ++ + ++ L +V + H DP ++C
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL---HHN-DPEVLADSC 253
Query: 187 WSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCI 246
W + + + + + G++ L+ ++ + V +
Sbjct: 254 W---------AISYLTDGPNERIEMVVKK-GVVPQLVKLLGAT------ELPIVTPALRA 297
Query: 247 LRNLS 251
+ N+
Sbjct: 298 IGNIV 302
Score = 54.3 bits (130), Expect = 2e-08
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLVKLLGHESPDVFRNAC 97
++ LS + + AA + + G I PL+ LL + + +
Sbjct: 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422
Query: 98 GALRNLSYGRQN----DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED 153
A+ N+ + ++ I+ GG+ + L R + V + ++ S E+
Sbjct: 423 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH-ENESVYKASLNLIEKYFSVEE 481
Score = 37.3 bits (86), Expect = 0.005
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYM------DDPNKQKTRSLGGIPPLVKLLGHESPDVF 93
++ LS + I + ++ + GG+ + L HE+ V+
Sbjct: 407 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVY 466
Query: 94 RNACGALRNLSYGRQNDENKRAI 116
+ + + Y +E + +
Sbjct: 467 KASLNLIEK--YFSVEEEEDQNV 487
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 84.3 bits (208), Expect = 2e-18
Identities = 38/225 (16%), Positives = 80/225 (35%), Gaps = 23/225 (10%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
+ ++ ++ + A L +LC P + +P L KL+ + +
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDL 154
AC A+ LS G E +A+ + L+ LL V+ + N+ + +
Sbjct: 277 ACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQ 333
Query: 155 KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214
+ +I+ G V+ + + S E CW + N ++ + + +
Sbjct: 334 TQVVINAG---VLPALRLLLSSPKENIKKEACW---------TISNITAGNTEQIQAVID 381
Query: 215 CEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVED 259
LI L+ +++ A K+ + + N S + D
Sbjct: 382 A-NLIPPLVKLLEVAEY------KTKKEACWAISNASSGGLQRPD 419
Score = 83.5 bits (206), Expect = 3e-18
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 24/218 (11%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
L + + + + +A + +L Q + LV+LL HES V
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDL 154
A A+ N+ G ND + + NAG +P L LL + KE + N+++ +
Sbjct: 319 ALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKE-ACWTISNITAGNTEQ 375
Query: 155 KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRE 214
+++ID L + + + + + E CW + NASS G +R
Sbjct: 376 IQAVIDANL--IPPLVKLLEVA-EYKTKKEACW---------AISNASSGGLQRPDIIRY 423
Query: 215 --CEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNL 250
+G I L +++ A N+ +E + L N+
Sbjct: 424 LVSQGCIKPLCDLLEIA------DNRIIEVTLDALENI 455
Score = 80.1 bits (197), Expect = 5e-17
Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 33/240 (13%)
Query: 23 KCRNSSLRWRDPNLTEVIS---------FLSNPNNV-IKANAAAYLQHLCYMDDPNKQKT 72
K R R P + VI F+ ++ AA L ++ +
Sbjct: 110 KFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 169
Query: 73 RSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKT 132
+P ++LL S +V A AL N++ + + + + + ++ L
Sbjct: 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVA--GDSTDYRDYVLQCNAMEPILGLFNSN 227
Query: 133 ADAEVKELVTGVLWNLS-SCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191
+ T L NL + + + +I D + + CW
Sbjct: 228 -KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI---YSMDTETLVDACW---- 279
Query: 192 RNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLS 251
+ S + A + + + + L+ ++ + + N+
Sbjct: 280 -----AISYLSDGPQEAIQAVIDV-RIPKRLVELLSHEST------LVQTPALRAVGNIV 327
Score = 73.9 bits (181), Expect = 6e-15
Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 26/220 (11%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
I L + +K A L ++ + + P++ L P + R A
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSI 158
L NL R + +P L L+ D E + LS ++ +++
Sbjct: 239 LSNLC--RGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAV 295
Query: 159 IDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEG 217
ID + +V + + + + N + + + +
Sbjct: 296 IDVRIPKRLVELLSHES-------------TLVQTPALRAVGNIVTGNDLQTQVVINAGV 342
Query: 218 L--IDSLLYVVKSAIEK------SNIGNKSVENCVCILRN 249
L + LL K I+K SNI + E ++
Sbjct: 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 382
Score = 67.4 bits (164), Expect = 8e-13
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
L + LS+P IK A + ++ + Q IPPLVKLL +
Sbjct: 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402
Query: 96 ACGALRNL-SYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154
AC A+ N S G Q + R + + G I L +LL + AD + E+ L N+ +
Sbjct: 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALENILKMGEA 461
Query: 155 KKSIIDDGLQVVVNHII 171
K + + I
Sbjct: 462 DKEARGLNINENADFIE 478
Score = 63.5 bits (154), Expect = 2e-11
Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 25/190 (13%)
Query: 65 DDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPL 124
+ ++ +P + + L + +A R + R++ + AG +P
Sbjct: 76 SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVPR 134
Query: 125 LINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDG-LQVVVNHIIIPHSGWDPVSA 182
L+ +R+ ++ L N++S K ++D + + + +
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS-------- 186
Query: 183 GETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSV-E 241
+ L N + R + +C ++ +L + S S+
Sbjct: 187 -----VEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNS-------NKPSLIR 233
Query: 242 NCVCILRNLS 251
L NL
Sbjct: 234 TATWTLSNLC 243
Score = 52.3 bits (125), Expect = 7e-08
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL---GGIPPLVKLLGHESPDVFRN 95
++ L K A + + R L G I PL LL +
Sbjct: 388 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447
Query: 96 ACGALRNL---------SYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLW 146
AL N+ + G +EN I+ AGG+ + N + + ++ E ++
Sbjct: 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ-NENDKIYEKAYKIIE 506
Query: 147 NLSSCED 153
E+
Sbjct: 507 TYFGEEE 513
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 81.6 bits (201), Expect = 4e-18
Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 19/215 (8%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPD-VFRNAC 97
V +L ++ AA + +++ LG + L++LL ++ D V A
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146
Query: 98 GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKK 156
A+ L R+ + G +L+ + + ++K +L NL + K
Sbjct: 147 FAISCLV--REQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKG 203
Query: 157 SIIDDG-LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLREC 215
++ G +Q +V + H S + G L + + ++ RE
Sbjct: 204 TLCSMGMVQQLVALVRTEH-------------SPFHEHVLGALCSLVTDFPQGVRECREP 250
Query: 216 EGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNL 250
E ++ LL +++ + +E C +L+
Sbjct: 251 ELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285
Score = 67.4 bits (164), Expect = 4e-13
Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 26/209 (12%)
Query: 51 KANAAAYLQHLCYMDDPNKQKTRSLGGIPPLV-KLLGHESPDVFRNACGALRNLSYGRQN 109
+ A L LC D N L G+ LV + L + + A + S +
Sbjct: 57 REGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS--QNV 113
Query: 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNL-SSCEDLKKSIID-DGLQVVV 167
+ + G + L+ LL + A V+ + L E + DG V++
Sbjct: 114 AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173
Query: 168 NHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVK 227
+ ++ + +L+N + L G++ L+ +V+
Sbjct: 174 RAM---QQQ-VQKLKVKSAF---------LLQNLLVGHPEHKGTLCS-MGMVQQLVALVR 219
Query: 228 SAIEKSNIGNKSVENCVCILRNLSFRCQE 256
+ E+ + L +L +
Sbjct: 220 TEHS------PFHEHVLGALCSLVTDFPQ 242
Score = 50.0 bits (119), Expect = 2e-07
Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 23/189 (12%)
Query: 69 KQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINL 128
K R L P ++ D + GAL L+ +N +N G+ LL+
Sbjct: 31 KSCLRVLSQPMPPTAGEAEQAADQ-QEREGALELLADLCENMDNAADFCQLSGMHLLVGR 89
Query: 129 LRKTADAEVKELVTGVLWNLSSC-EDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCW 187
+ A ++ ++ S +++ ++ G + ++ +
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC----------- 138
Query: 188 STIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEK---------SNIGNK 238
T+ + E + +G L+ ++ ++K N+
Sbjct: 139 DTVRVKALFAISCLVREQEAGLLQFLRLDG-FSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197
Query: 239 SVENCVCIL 247
E+ +
Sbjct: 198 HPEHKGTLC 206
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 72.6 bits (177), Expect = 2e-14
Identities = 35/250 (14%), Positives = 78/250 (31%), Gaps = 40/250 (16%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
+ ++ + A L +C + K GG+ L+++ + R+A A
Sbjct: 501 CALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQA 559
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC-EDLKKSI 158
L + + + ++ I L+NLL++ A L NL+S E +++ I
Sbjct: 560 LARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRI 619
Query: 159 IDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF--------------------------- 191
I + + + ++ A C +
Sbjct: 620 IKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED 678
Query: 192 ----RNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCIL 247
+G L +S +K+ +D L ++ + + I+
Sbjct: 679 EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP------AVQHRGIVII 732
Query: 248 RNLSFRCQEV 257
N+ +E+
Sbjct: 733 LNMINAGEEI 742
Score = 69.1 bits (168), Expect = 3e-13
Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 3/139 (2%)
Query: 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85
++ ++++ +L + + AA L +L +D K + + L L
Sbjct: 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC 674
Query: 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145
E + GAL ++ ++ + A + +L L+ V+ ++
Sbjct: 675 EDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIA-NPSPAVQHRGIVII 732
Query: 146 WNL-SSCEDLKKSIIDDGL 163
N+ ++ E++ K + + +
Sbjct: 733 LNMINAGEEIAKKLFETDI 751
Score = 63.7 bits (154), Expect = 1e-11
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL-GGIPPLVKLLGHESPDVFRNAC 97
+ + + A L + + +K ++ + L L+ + SP V
Sbjct: 670 LALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729
Query: 98 GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK 155
+ N+ +E + + + LL L + D + L++ E +
Sbjct: 730 VIILNMINA--GEEIAKKLFETDIMELLSGLG-QLPDDTRAKAREVATQCLAAAERYR 784
Score = 58.3 bits (140), Expect = 9e-10
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 32/152 (21%)
Query: 50 IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQN 109
I+ AA L +L + ++ I L+ L + NL +
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454
Query: 110 ------------------------------DENKRAIKNAGGIPLLINLLRKTADAEVKE 139
++ + N G L L KT +E
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTESHNSQE 513
Query: 140 LVTGVLWNLSSCEDLKKSIIDDG-LQVVVNHI 170
L+ VL + ++L+ ++ +G ++ ++
Sbjct: 514 LIARVLNAVCGLKELRGKVVQEGGVKALLRMA 545
Score = 53.7 bits (128), Expect = 3e-08
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 26 NSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85
+ + R+ L +++ + + + + A L +K K G+ L +L
Sbjct: 282 GNQVVAREGILQMILAMATTDDELQQRVACECLIAASS--KKDKAKALCEQGVDILKRLY 339
Query: 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK-----TADAEVKEL 140
++ + A L L D R G L R+ D +++
Sbjct: 340 HSKNDGIRVRALVGLCKLGSYGGQDAAIR-PFGDGAALKLAEACRRFLIKPGKDKDIRRW 398
Query: 141 VTGVLWNLSSCEDLKKSIIDDG 162
L L+ + K+ +I+D
Sbjct: 399 AADGLAYLTLDAECKEKLIEDK 420
Score = 34.4 bits (78), Expect = 0.041
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 6/134 (4%)
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKS 157
A NL + + I + +L + D ++ + ++ L + K
Sbjct: 28 AANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKG 87
Query: 158 IIDD-GLQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKL--RE 214
++ + G+ + + H + VS + C TI SG+ S + RE
Sbjct: 88 VLTELGVPWFMRVLDQKHE--NCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNRE 145
Query: 215 CEGLIDSLLYVVKS 228
+ L+ L+Y +
Sbjct: 146 IDTLLTCLVYSITD 159
Score = 30.6 bits (68), Expect = 0.80
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 5/135 (3%)
Query: 27 SSLRWRDPNLTEVISFLSNPNNV-IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLL 85
+ L ++D + +V S + I N + LC + + G+P +++L
Sbjct: 42 AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVL 101
Query: 86 GHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145
+ + A L+ + +NK + L + D + LV +
Sbjct: 102 DQKHENCVSTAQFCLQTILNALSGLKNKPD---SKPDKELCTRNNREIDTLLTCLVYS-I 157
Query: 146 WNLSSCEDLKKSIID 160
+ + + +I+
Sbjct: 158 TDRTISGAARDGVIE 172
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 49.4 bits (117), Expect = 7e-07
Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 35/246 (14%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNK--QKTRSLGGIPPLVKLLGHESPDVF 93
+ E ++ + I+ L + +P +K +L IP L +LL +P
Sbjct: 503 ILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDD 562
Query: 94 RN--------------ACGALRNL---SYGRQNDENKRAIKNAGGIPLLINLLRKTADAE 136
A AL NL + K + + NL+ +
Sbjct: 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML-DENVP 621
Query: 137 VKELVTGVLWNLSSCEDLKKSIIDDGLQVVVN---HIIIPHSGWDPVSAGETCWSTIFRN 193
++ ++ N+ S + + +I++ V E+ R
Sbjct: 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV---ESQ-----RA 673
Query: 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFR 253
+ + N ++ K+L + LI++ + V I+ + + + + L
Sbjct: 674 VAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL----RQRLLMLFFGLFEV 729
Query: 254 CQEVED 259
+
Sbjct: 730 IPDNGT 735
Score = 43.2 bits (101), Expect = 7e-05
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 68 NKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLIN 127
N++ I L + + + SP+ + + N++ ++ + G + +++
Sbjct: 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT---RSKNFIPQLAQQGAVKIILE 505
Query: 128 LLRKTADAEVK 138
L D
Sbjct: 506 YLANKQDIGEP 516
Score = 42.1 bits (98), Expect = 2e-04
Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 29/237 (12%)
Query: 29 LRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPN-----KQKTRSLGGIPPLVK 83
L P + A L +L + + K + +
Sbjct: 554 LPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613
Query: 84 LLGHESPDVFRNACGALRNLSYGRQ-------NDENKRAIKNAGGIPLLINLLRKTADAE 136
L+ E+ + R+ + N+ N EN ++++N +L+ LL+ +D E
Sbjct: 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN---FNILVKLLQ-LSDVE 669
Query: 137 VKELVTGVLWNLSSCEDLKKSII---DDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRN 193
+ V + N+++ L + + ++ + + + +F
Sbjct: 670 SQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729
Query: 194 TSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNL 250
N L+E + L D+L ++++ + G + IL +
Sbjct: 730 IPDNGTNE------VYPLLQENQKLKDAL----NMSLKRGDSGPEFSAAIPVILAKI 776
Score = 32.8 bits (74), Expect = 0.13
Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 107 RQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG-LQV 165
N++ I I L + K+ V +++N++ ++ + G +++
Sbjct: 444 DILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKI 502
Query: 166 VVNHII 171
++ ++
Sbjct: 503 ILEYLA 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 59/358 (16%), Positives = 93/358 (25%), Gaps = 112/358 (31%)
Query: 6 LFLTGSQ--EEFYSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCY 63
F SQ E+F N L P TE + P + +L ++
Sbjct: 26 SFFIASQLQEQF----------NKIL----PEPTEGFAADDEPTTPAEL-VGKFLGYVSS 70
Query: 64 MDDPNKQKTRS--------------LGG--IPPLVKLLGHESPDVFRNACGALRNLSYGR 107
+ +P+K L G I L L E+ ++N Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--YIT 128
Query: 108 QNDENKRAIKNAGGIPLL-------INL----------------LR---KTADAEVKELV 141
KR L L LR +T V +L+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 142 ---TGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGW--DPVSAGET----------- 185
L L + + GL ++ W +P + +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNIL---------EWLENPSNTPDKDYLLSIPISCP 239
Query: 186 -------CWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNK 238
+ G + GE R L+ G L V AI +++
Sbjct: 240 LIGVIQLAHYVVTAKLLGF-----TPGEL-RSYLKGATGHSQGL--VTAVAIAETDSWES 291
Query: 239 SVENCVCILRNLSF---RCQEVEDPNYDKHPVVSQSRTSPQAKGKSNIWNRPIDLLSV 293
+ + L F RC E PN P + + S P +LS+
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPS-----P--MLSI 341
Score = 38.5 bits (89), Expect = 0.003
Identities = 47/287 (16%), Positives = 82/287 (28%), Gaps = 121/287 (42%)
Query: 4 SILFLTG--SQEEF----YSPSLNKKCRNSS-------LRWRDPNLTEVISF-------- 42
++LF G E + PS+ + ++ L + +V +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 43 ---------LSN-PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPP--LVKLLGHESP 90
L N N++ + G PP L L
Sbjct: 361 PAGKQVEISLVNGAKNLV------------------------VSG-PPQSLYGL------ 389
Query: 91 DVFRNACGALRNLSYGRQNDENK-----RAIKNAGGIPLL-IN------LLRKTADAEVK 138
LR D+++ R +K L + LL +D K
Sbjct: 390 ------NLTLRKAKAPSGLDQSRIPFSERKLK--FSNRFLPVASPFHSHLLVPASDLINK 441
Query: 139 ELVT-GVLWNLSSCEDLKKSIID--DG--LQV--------VVNHIIIPHSGWDPVSAGET 185
+LV V +N D++ + D DG L+V +V+ II W+ + +
Sbjct: 442 DLVKNNVSFNAK---DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 186 CWSTIF-------------RNTSG----VL----RNASSAGEYARKK 211
F RN G V+ + + +Y K+
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 35.0 bits (80), Expect = 0.028
Identities = 33/193 (17%), Positives = 53/193 (27%), Gaps = 82/193 (42%)
Query: 27 SSLRWRDP----NLTEVISFLSN--PNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPP 80
+S +R + T+ P + A + L +S G IP
Sbjct: 1715 TSYTFRSEKGLLSATQ------FTQP--ALTLMEKAAFEDL-----------KSKGLIPA 1755
Query: 81 LVKLLGH---E-SPDVFRNA--CGA--------LRNLSY-GR------QNDENKRAIKNA 119
GH E + A A + + Y G DE R+ N
Sbjct: 1756 DATFAGHSLGEYA------ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS--NY 1807
Query: 120 GGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQV-VVNH------III 172
G I + + + E + V E + K G V +VN+ +
Sbjct: 1808 GMIAINPGRVAASFSQEALQYV---------VERVGK---RTGWLVEIVNYNVENQQYVA 1855
Query: 173 PHSGWDPVSAGET 185
AG+
Sbjct: 1856 ---------AGDL 1859
Score = 31.6 bits (71), Expect = 0.33
Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 106/260 (40%)
Query: 10 GSQE-----EFYSPSLNKKCRNSSLRWR--DPNLTEVISFLSNPNNVIKANAAAYLQHLC 62
GSQE + Y S K ++ W D + + F + +++ N H
Sbjct: 1625 GSQEQGMGMDLYKTS--KAAQDV---WNRADNHFKDTYGF--SILDIVINNPVNLTIHF- 1676
Query: 63 YMDDPNKQKTRSLGGIPPLVKLLGHESPD-------VFRNACGALRNLSYGRQNDENKRA 115
++ R ++ D +F+ + ++ +
Sbjct: 1677 --GGEKGKRIREN-----YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG----- 1724
Query: 116 IKNAGGIPLLINLLRKT-----ADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHI 170
LL T A L ++ EDLK GL
Sbjct: 1725 ------------LLSATQFTQPA------LTL---MEKAAFEDLKS----KGL------- 1752
Query: 171 IIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEY-ARKKLRECEGL--IDSLLYVVK 227
IP D AG S GEY A L + I+SL+ VV
Sbjct: 1753 -IPA---DATFAGH------------------SLGEYAA---LASLADVMSIESLVEVVF 1787
Query: 228 -------SAIEKSNIGNKSV 240
A+ + +G +
Sbjct: 1788 YRGMTMQVAVPRDELGRSNY 1807
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 43.6 bits (103), Expect = 3e-05
Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 19/138 (13%)
Query: 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPD 91
+ N E+ L + N++ + ++A LQ + ++ ++
Sbjct: 21 KKLNDDELFRLLDDHNSLKRISSARVLQ-----------LRGGQDAVRLAIEFCSDKNYI 69
Query: 92 VFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
L + ++ + +L N+ A V+
Sbjct: 70 RRDIGAFILGQIKICKKCE--------DNVFNILNNMALNDKSACVRATAIESTAQRCKK 121
Query: 152 EDLKKSIIDDGLQVVVNH 169
+ I + Q+
Sbjct: 122 NPIYSPKIVEQSQITAFD 139
Score = 34.8 bits (80), Expect = 0.024
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
+ + + + ++ A + ++D IP L+ LL + DV
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAI---SVINDK--------ATIPLLINLLKDPNGDVRNW 178
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSS---CE 152
A A+ +N + +L + + EV+ L
Sbjct: 179 AAFAI-----NINKYDNSDI------RDCFVEML-QDKNEEVRIEAIIGLSYRKDKRVLS 226
Query: 153 DLKKSIIDDGLQVVV 167
L + + + +
Sbjct: 227 VLCDELKKNTVYDDI 241
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 41.9 bits (99), Expect = 7e-05
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 26/115 (22%)
Query: 32 RDPN-LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESP 90
DP + I L + + ++ AA L + + PL+K L E
Sbjct: 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKI-----------GDERAVEPLIKALKDEDA 59
Query: 91 DVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145
V R A AL I + + LI L K D V++ L
Sbjct: 60 WVRRAAADAL-------------GQIGDERAVEPLIKAL-KDEDGWVRQSAAVAL 100
Score = 35.7 bits (83), Expect = 0.008
Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 34/129 (26%)
Query: 40 ISFLSNPNNVIKANAAAYL---------QHLC-YMDDPNKQ----------KTRSLGGIP 79
I L + + ++ AA L + L + D + + +
Sbjct: 51 IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVE 110
Query: 80 PLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKE 139
PL+K L E V A AL I + + LI L K D V++
Sbjct: 111 PLIKALKDEDWFVRIAAAFALGE-------------IGDERAVEPLIKAL-KDEDGWVRQ 156
Query: 140 LVTGVLWNL 148
L +
Sbjct: 157 SAADALGEI 165
Score = 26.9 bits (60), Expect = 7.3
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 20/85 (23%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCY----------MDDPN----KQKTRSLGGI------ 78
+I L + + ++ AA L + + D + + +LG I
Sbjct: 112 LIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVR 171
Query: 79 PPLVKLLGHESPDVFRNACGALRNL 103
+ KL + + A L
Sbjct: 172 AAMEKLAETGTGFARKVAVNYLETH 196
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 40.4 bits (95), Expect = 2e-04
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 25/108 (23%)
Query: 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNAC 97
I L + + ++ AA L + D + PL+K L E V R A
Sbjct: 23 MYIKNLQDDSYYVRRAAAYAL---GKIGDE--------RAVEPLIKALKDEDAWVRRAAA 71
Query: 98 GALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145
AL I + + LI L K D V++ L
Sbjct: 72 DAL-------------GQIGDERAVEPLIKAL-KDEDGWVRQSAAVAL 105
Score = 35.8 bits (83), Expect = 0.009
Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 34/129 (26%)
Query: 40 ISFLSNPNNVIKANAAAYL---------QHLC-YMDDPNKQ----------KTRSLGGIP 79
I L + + ++ AA L + L + D + + +
Sbjct: 56 IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVE 115
Query: 80 PLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKE 139
PL+K L E V A AL I + + LI L K D V++
Sbjct: 116 PLIKALKDEDWFVRIAAAFALGE-------------IGDERAVEPLIKAL-KDEDGWVRQ 161
Query: 140 LVTGVLWNL 148
L +
Sbjct: 162 SAADALGEI 170
Score = 34.6 bits (80), Expect = 0.022
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
+ +K L +S V R A AL I + + LI L+ DA V
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGK-------------IGDERAVEPLIKALK-DEDAWV 66
Query: 138 KELVTGVL 145
+ L
Sbjct: 67 RRAAADAL 74
Score = 27.7 bits (62), Expect = 3.7
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 20/93 (21%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCY----------MDDPN----KQKTRSLGGI------ 78
+I L + + ++ AA L + + D + + +LG I
Sbjct: 117 LIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVR 176
Query: 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDE 111
+ KL + + A L +
Sbjct: 177 AAMEKLAETGTGFARKVAVNYLETHKSFNHHHH 209
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 39.8 bits (92), Expect = 8e-04
Identities = 13/85 (15%), Positives = 30/85 (35%)
Query: 19 SLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGI 78
++ + C + + + +I LS+ ++++ L + T +
Sbjct: 385 AIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444
Query: 79 PPLVKLLGHESPDVFRNACGALRNL 103
L+K + + V AC A L
Sbjct: 445 TELLKRILDSNKRVQEAACSAFATL 469
Score = 31.7 bits (71), Expect = 0.29
Identities = 27/170 (15%), Positives = 49/170 (28%), Gaps = 42/170 (24%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
+ +++ +P+ I+ L+ L Q + ++ L E R+
Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQL-------NQYPDFNNYLIFVLTKLKSEDEPT-RS 66
Query: 96 ACG-ALRNL---SYGRQNDENKRAIKNA-----------------------------GGI 122
G L+N + + IK+
Sbjct: 67 LSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW 126
Query: 123 PLLINLLRKTADAEVKELVTGVLWNLSS-CEDLKKSIIDDGLQVVVNHII 171
P L+ L D+E G L CED + + D L +N +I
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMI 176
Score = 29.4 bits (65), Expect = 1.7
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAE- 136
IP L++ L + V C L ++ + +K PL+ LL++ D+
Sbjct: 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK-----PLMTELLKRILDSNK 456
Query: 137 -VKELVTGVLWNLSSCEDLKKSII 159
V+E L E+ ++
Sbjct: 457 RVQEAACSAFATL--EEEACTELV 478
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 37.7 bits (88), Expect = 8e-04
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 26/98 (26%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGA 99
S +++ N ++ + + L M D PL++ L +E + A
Sbjct: 18 GSHMADENKWVRRDVSTALSR---MGDE---------AFEPLLESLSNEDWRIRGAAAWI 65
Query: 100 LRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
+ N ++ + LI LL + V
Sbjct: 66 IGN-------------FQDERAVEPLIKLL-EDDSGFV 89
Score = 29.6 bits (67), Expect = 0.57
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 20/90 (22%)
Query: 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCY----------MDDPNKQK----TRSLGG 77
D ++ LSN + I+ AA + + ++D + RSL
Sbjct: 40 GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ 99
Query: 78 I------PPLVKLLGHESPDVFRNACGALR 101
I + KL + + A L
Sbjct: 100 IGGERVRAAMEKLAETGTGFARKVAVNYLE 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 48/295 (16%), Positives = 88/295 (29%), Gaps = 96/295 (32%)
Query: 24 CRNSSLRWRDPNLTEV--ISF--LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIP 79
C + ++ + ++ ++ ++P V++ LQ L Y DPN S
Sbjct: 171 CLSYKVQCKMDF--KIFWLNLKNCNSPETVLEM-----LQKLLYQIDPNWT---SRSDHS 220
Query: 80 PLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV-- 137
+KL H LR L + +N LL+ L +A+
Sbjct: 221 SNIKLRIHSIQA-------ELRRLLKSKPY-------ENC----LLV--LLNVQNAKAWN 260
Query: 138 ------KELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIF 191
K L+T K + D HI + H ++ E ++
Sbjct: 261 AFNLSCKILLT--------TRF--KQVTDFLSAATTTHISLDHHSM-TLTPDEV--KSLL 307
Query: 192 RNTSGV----LRNA---------SSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNK 238
L S E +R+ D+ +V +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCDKL------TT 357
Query: 239 SVENCVCILRNLSFRCQEVEDPNYDKHPVVSQSRTSPQAKGKSNIWNRPIDLLSV 293
+E+ + +L +R +D+ V S ++I P LLS+
Sbjct: 358 IIESSLNVLEPAEYR------KMFDRLSVFPPS---------AHI---PTILLSL 394
Score = 30.2 bits (67), Expect = 1.1
Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 47/203 (23%)
Query: 4 SILFLTGSQEEFYSPSLNKKCRNSSL--RWRDPNLTEV----ISFLSNPNNVIKANA--- 54
S+++ + + + K SL + + + + N +
Sbjct: 393 SLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 55 AAYLQHLCYMDDPNKQKTRSLGGIPPLV-----KLLGH--------ESPDVFRNACGALR 101
Y + D + IPP + +GH E +FR
Sbjct: 451 DHYNIPKTF--DSD-------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---VFL 498
Query: 102 NLSYGRQNDENKRAIKNAGGIPL-LINLLRK------TADAEVKELVTGVLWNLSSCE-D 153
+ + Q + NA G L + L+ D + + LV +L L E +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 154 LKKSIIDDGLQVVVNHIIIPHSG 176
L S D L++ +
Sbjct: 559 LICSKYTDLLRIALMA---EDEA 578
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 32.9 bits (74), Expect = 0.090
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL---GGIPPLVKLLGHESPDV 92
L ++ + + A L + R + + + L E+ V
Sbjct: 35 LFLILELAGEDDETTRLRA---FVALGEILKRADSDLRMMVLERHLDVFINALSQENEKV 91
Query: 93 FRNACGALRNL 103
A AL L
Sbjct: 92 TIKALRALGYL 102
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 32.8 bits (74), Expect = 0.14
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 94 RNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTA-DAEVKELVTGVLWNLSSCE 152
RNA AL++LS + R + LI++L+ D+E+ L+N+ S +
Sbjct: 40 RNAVRALKSLS------KKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93
Query: 153 D 153
+
Sbjct: 94 E 94
Score = 27.8 bits (61), Expect = 5.7
Identities = 11/106 (10%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 47 NNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVF------RNACGAL 100
++ + LQ+L ++ N+ + I + + N L
Sbjct: 225 GGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284
Query: 101 RNL-------SYGRQNDENKRAIKNAGGIPLLINL-LRKTADAEVK 138
+ + + ++A+ G + L + + A++
Sbjct: 285 QLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 31.9 bits (72), Expect = 0.16
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGI-PPLVKLLGHESPDVFR 94
++ LSN N +K+ A ++ P + L + LVK L P V
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194
Query: 95 NACGALRNL 103
++ AL L
Sbjct: 195 SSAEALGTL 203
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 32.4 bits (74), Expect = 0.19
Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 43 LSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRN 102
+PN +I+A A ++ + + T L PL K L E P V + A +
Sbjct: 95 CEDPNPLIRALA---VRTMGCIRVDKI--TEYL--CEPLRKCLKDEDPYVRKTAAVCVAK 147
Query: 103 LSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
L +D N + +++ G + L +L+ + + V L + E S + D
Sbjct: 148 L-----HDINAQMVEDQGFLDSLRDLIADS-NPMVVANAVAALSEI--SESHPNSNLLDL 199
Query: 163 LQVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSL 222
+N ++ + W IF +L Y K RE + + + +
Sbjct: 200 NPQNINKLLTALNECTE-------WGQIF-----ILD---CLSNYNPKDDREAQSICERV 244
Query: 223 LYVVKSA 229
+ A
Sbjct: 245 TPRLSHA 251
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 30.8 bits (69), Expect = 0.38
Identities = 4/70 (5%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLC-----YMDDPNKQKTRSLGGIPPLVKLLGHESP 90
L +++ + + I+ + + +P +++++ P
Sbjct: 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEV--VPIVIQIVNDTQP 205
Query: 91 DVFRNACGAL 100
+ +
Sbjct: 206 AIRTIGFESF 215
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 31.0 bits (70), Expect = 0.44
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
EV L N+ ++ AA H+ P + +P LL ++ V
Sbjct: 144 AGEVEKLLKTSNSYLRKKAALCAVHV-IRKVPELME----MFLPATKNLLNEKNHGVLHT 198
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
+ L + ++ + + +P L+ +L+ +
Sbjct: 199 SVVLLTEMC--ERSPDMLAHFRKL--VPQLVRILKNLIMSGY 236
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 30.3 bits (69), Expect = 0.55
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 114 RAIKNAGGIPLLINLLRKTADAEVKELVTGVL 145
AI+ GG P+ + + + + LV G+L
Sbjct: 35 DAIQKVGGFPIALPIDDPSTAVQAISLVDGLL 66
>3n3y_A Thymidylate synthase THYX; transferase; HET: UMP FAD; 2.31A
{Helicobacter pylori} PDB: 3ah5_A*
Length = 216
Score = 29.8 bits (67), Expect = 0.87
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 38 EVISFLSNPNNVIKANAAAYLQHLCYM--DDPNKQKTRSLGGIPPLVKLLGHESP 90
EVI P ++ + A C+ + + + I + + H S
Sbjct: 10 EVICKHYTPLDIA-SQAI----RTCWQSFEYSDDGGCKDKELIHRVGNIFRHSST 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 29.6 bits (66), Expect = 1.6
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 19 SLNKKCRNSSLRWRDPNLTE-VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG 77
+L K W + V++ +PN + + + L + + L
Sbjct: 464 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML-- 521
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
P ++++ G +V N +L+ + N + + P+L L + D +V
Sbjct: 522 -PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV-----KPILEKLT-QDQDVDV 574
Query: 138 KELVTGVLWNLS 149
K L LS
Sbjct: 575 KYFAQEALTVLS 586
Score = 27.3 bits (60), Expect = 7.4
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 39 VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACG 98
+ +S+ N +K+ A+ + L + + L P + L E P+V N
Sbjct: 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL---PLFLAQLKDECPEVRLNIIS 385
Query: 99 ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
L ++ + +++ +P ++ L + A V+ + + L+
Sbjct: 386 NLDCVNEVIGIRQLSQSL-----LPAIVELA-EDAKWRVRLAIIEYMPLLAGQ 432
>1muk_A Minor core protein lambda 3; single subunit polymerase fold,
fingers, PALM, thumb, right hand configuration, viral
protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A*
1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1
Length = 1267
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 260 PNYDKHPVVSQSRTSPQAKGKSNIWNRPIDLL 291
PN +HP+V + R + A W +D +
Sbjct: 793 PNLSRHPIVGKERANSSA---EEPWPAILDQI 821
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2,
structural genomics, protein structure initiative; 2.04A
{Streptomyces coelicolor} SCOP: c.94.1.1
Length = 291
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 28 SLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCY-MDDPNK-------QKTRSLGGIP 79
S + +V + + A Y L + P ++ G P
Sbjct: 214 SRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTLDFRFGAPQLEAVTEFARRVGPTTGFP 273
Query: 80 PLVKL 84
VK+
Sbjct: 274 ADVKV 278
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 27.5 bits (61), Expect = 4.5
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 32 RDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPD 91
+P+L +L++P +A A Y + L L+
Sbjct: 50 NNPHLAV--QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEV 89
Query: 92 VFRNACGAL-RNLSYGRQNDENKR---AIKNAGGIPLLINLLRKTADAEVKELV-----T 142
V R L R DE++ + + + L + D V+ V
Sbjct: 90 VRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAAD-RDYLVRAYVVQRIPP 148
Query: 143 GVLWNLSSCED 153
G L+ ED
Sbjct: 149 GRLFRFMRDED 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,391,842
Number of extensions: 252646
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 141
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)