RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15592
(294 letters)
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 148 bits (374), Expect = 3e-42
Identities = 90/245 (36%), Positives = 143/245 (58%), Gaps = 6/245 (2%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
+ + + +LS+ + +A A Y+QH C+ D+ KQ+ LGGI LV LL + +V +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 96 ACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLK 155
A GALRNL + + NK + GI ++LLR+T +AE+++ +TG+LWNLSS ++LK
Sbjct: 64 AAGALRNLVFR--STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 156 KSIIDDGLQVVVNHIIIPHSGWDP---VSAGETCWSTIFRNTSGVLRNASSAGEYARKKL 212
+ +I D L V+ + +IIP SGW + E +F N +G LRN SSA R+ +
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA-GRQTM 180
Query: 213 RECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNYDKHPVVSQSR 272
R GLIDSL+ V++ + S +KSVENC+C+L NLS+R Y + +++
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 273 TSPQA 277
+ ++
Sbjct: 241 YTEKS 245
Score = 71.0 bits (172), Expect = 2e-14
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH------ES 89
L ++ L + N+ + + A+ L ++ P + P + +LL S
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390
Query: 90 PDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLS 149
D+ +AC +RNL + + ++ + +INL R +A + E +L ++
Sbjct: 391 EDILSSACYTVRNLMAS--QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448
Query: 150 SCEDLKKSI 158
S ++L+ +
Sbjct: 449 SSKELQGVL 457
Score = 49.4 bits (116), Expect = 2e-07
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 11/123 (8%)
Query: 60 HLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNA 119
++ G+P + +LL + DV R+ L N+S ++ R + N
Sbjct: 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS---RHPLLHRVMGN- 370
Query: 120 GGIPLLINLLR-----KTADAEVKELVTGVLWNLSSC-EDLKKSIID-DGLQVVVNHIII 172
P + LL + ++ + NL + L K L ++N
Sbjct: 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430
Query: 173 PHS 175
S
Sbjct: 431 SAS 433
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 80.7 bits (197), Expect = 9e-18
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 5/131 (3%)
Query: 19 SLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGI 78
L + + R T+ I L L D N+ R L I
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTI 462
Query: 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVK 138
P V+LL ++ R A G L L+ Q+ E AI+ G L LL + + V
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTELL-HSRNEGVA 518
Query: 139 ELVTGVLWNLS 149
VL+ +S
Sbjct: 519 TYAAAVLFRMS 529
Score = 78.0 bits (190), Expect = 1e-16
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 58 LQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIK 117
+ +L D + TR+ IP L KLL E V A + LS ++ ++
Sbjct: 2 VVNLINYQDDAELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMR 56
Query: 118 NAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ + ++ ++ T D E G L NLS + +I G
Sbjct: 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 101
Score = 73.4 bits (178), Expect = 3e-15
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 38 EVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGH-ESPDVFRNA 96
E+ L++ + V+ AA + L + RS + +V+ + + + R
Sbjct: 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80
Query: 97 CGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152
G L NLS + E AI +GGIP L+ +L + V L NL +
Sbjct: 81 AGTLHNLS---HHREGLLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQ 132
Score = 68.0 bits (164), Expect = 2e-13
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 26/170 (15%)
Query: 15 FYSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRS 74
+ + + L V+ L P++ A L + N R
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 75 LGGIPPLVKLL----------------------GHESPDVFRNACGALRNLSYGRQNDEN 112
G IP LV+LL G ++ GAL L+ ++ N
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA---RDVHN 452
Query: 113 KRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDG 162
+ I+ IPL + LL + ++ + GVL L+ ++ ++I +G
Sbjct: 453 RIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEG 501
Score = 51.4 bits (121), Expect = 5e-08
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 4/154 (2%)
Query: 36 LTEVISFLSNPNNV-IKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR 94
++ ++ + N N+V A L +L GGIP LVK+LG V
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 95 NACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDL 154
A L N + K A++ AGG+ ++ LL KT + + ++
Sbjct: 120 YAITTLHN--LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
Query: 155 KKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWS 188
K I+ G + +I+ ++ +
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 64.8 bits (156), Expect = 2e-12
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADA 135
+ +VK + + + A A R L R+ I AG IP ++ L KT +
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLS-REKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 136 EVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGWDP 179
++ L N++S + + D + I +
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVD--GGAIPAFISLLASPHA 113
Score = 56.7 bits (135), Expect = 8e-10
Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 5/160 (3%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDD-PNKQKTRSLGGIPPLVKLLGH-ESPDVF 93
+ +++ +++ N + A + L + P G IP V LG + +
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74
Query: 94 RNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCED 153
+ AL N++ G E +A+ + G IP I+ L + A + E L N++
Sbjct: 75 FESAWALTNIASG--TSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGS 131
Query: 154 LKKSIIDDGLQVVVNHIIIPHSGWDPVSAGETCWSTIFRN 193
+ ++ + ++ ++ G T +
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 171
Score = 53.7 bits (127), Expect = 1e-08
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 2/133 (1%)
Query: 16 YSPSLNKKCRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL 75
+ + L S L+NP I+ A + ++ Q+ +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313
Query: 76 GGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADA 135
G +P LV +L + A A+ N + G E + + G I L+NLL D
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSG-GTVEQIVYLVHCGIIEPLMNLL-SAKDT 371
Query: 136 EVKELVTGVLWNL 148
++ +++ + N+
Sbjct: 372 KIIQVILDAISNI 384
Score = 44.8 bits (104), Expect = 7e-06
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 24 CRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDP-NKQKTRSLGGIPPLV 82
+ ++ LS + + AA + + G I PL+
Sbjct: 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 363
Query: 83 KLLGHESPDVFRNACGALRNL----SYGRQNDENKRAIKNAGGIPLLINLL 129
LL + + + A+ N+ + ++ I+ GG+ + L
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 414
Score = 36.7 bits (83), Expect = 0.003
Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 15/166 (9%)
Query: 22 KKCRNSSLRWRDPNLTEVI---------SFLSNPNNV-IKANAAAYLQHLCYMDDPNKQK 71
+ R R + P + +I SFL + I+ +A L ++ +
Sbjct: 35 QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94
Query: 72 TRSLGGIPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRK 131
G IP + LL + A AL N++ + + G I L+ LL
Sbjct: 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLAV 152
Query: 132 TADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNHIIIPHSGW 177
++ L G L NL+ + + I+P
Sbjct: 153 P---DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Score = 28.6 bits (62), Expect = 1.1
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 40 ISFLSNPNNVIKANAAAYLQHLCYM------DDPNKQKTRSLGGIPPLVKLLGHESPDVF 93
++ LS + I + ++ + GG+ + L HE+ V+
Sbjct: 363 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVY 422
Query: 94 RNACGALRN 102
+ + +
Sbjct: 423 KASLNLIEK 431
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 264
Score = 59.7 bits (143), Expect = 5e-11
Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 35/229 (15%)
Query: 51 KANAAAYLQHLCYMDDPNKQKTRSLGGIPPLV-KLLGHESPDVFRNACGALRNLSYGRQN 109
+ A L LC + N L G+ LV + L + + A + S
Sbjct: 34 REGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ--NV 90
Query: 110 DENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGLQVVVNH 169
+ + G + L+ LL + A V+ + L ++ V
Sbjct: 91 AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 150
Query: 170 IIIPHSGWDPVSAGETCWSTIFR-------------------------------NTSGVL 198
+ + + G L
Sbjct: 151 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 210
Query: 199 RNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSNIGNKSVENCVCIL 247
+ + ++ RE E ++ LL +++ + +E C +L
Sbjct: 211 CSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
Score = 42.7 bits (99), Expect = 2e-05
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 79 PPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVK 138
P + A L +L +N +N G+ LL+ + A ++
Sbjct: 20 PTAGEAEQAADQQEREGALELLADLC---ENMDNAADFCQLSGMHLLVGRYLEAGAAGLR 76
Query: 139 ELVTGVLWNLSSC 151
++ S
Sbjct: 77 WRAAQLIGTCSQN 89
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 40.1 bits (92), Expect = 2e-04
Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 13/122 (10%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSL---GGIPPLVKLLGHESPDVFRNACGAL 100
K A + + R L G I PL LL + AL
Sbjct: 382 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 441
Query: 101 RNL---------SYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSC 151
N+ + G +EN I+ AGG+ + N + + ++ E ++
Sbjct: 442 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QNENDKIYEKAYKIIETYFGE 500
Query: 152 ED 153
E+
Sbjct: 501 EE 502
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 40.1 bits (92), Expect = 2e-04
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLC-YMDDPNKQKTRSLGGIPPLVKLLGHESPDVFR 94
L + +L + ++ +++ ++ P ++ I +K L +V R
Sbjct: 964 LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRR 1021
Query: 95 NACGALRNL 103
A +
Sbjct: 1022 VALVTFNSA 1030
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 34.4 bits (77), Expect = 0.014
Identities = 12/81 (14%), Positives = 27/81 (33%)
Query: 24 CRNSSLRWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVK 83
L + + NP+ + A + +P++ K + +P L++
Sbjct: 355 ATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 414
Query: 84 LLGHESPDVFRNACGALRNLS 104
L+ S V A + +
Sbjct: 415 LMKDPSVVVRDTAAWTVGRIC 435
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 34.0 bits (76), Expect = 0.020
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 19 SLNKKCRNSSLRWRDPNLTE-VISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGG 77
+L K W + V++ +PN + + + L + + L
Sbjct: 464 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML-- 521
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
P ++++ G +V N +L+ + N + +K P+L L + D +V
Sbjct: 522 -PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK-----PILEKLTQDQ-DVDV 574
Query: 138 KE 139
K
Sbjct: 575 KY 576
Score = 29.4 bits (64), Expect = 0.67
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 36 LTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRN 95
L V+ +P ++ N A LQ + + D + ++ P L KL + DV
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK---PILEKLTQDQDVDVKYF 577
Query: 96 ACGALRNLSYG 106
A AL LS
Sbjct: 578 AQEALTVLSLA 588
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 30.7 bits (68), Expect = 0.073
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 30 RWRDPNLTEVISFLSNPNNVIKANAAAYLQHLCYMD--------------DPNKQKTRSL 75
R D ++ LSN + I+ AA + + RSL
Sbjct: 18 RMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSL 77
Query: 76 GGI------PPLVKLLGHESPDVFRNACGAL 100
I + KL + + A L
Sbjct: 78 EQIGGERVRAAMEKLAETGTGFARKVAVNYL 108
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 31.0 bits (68), Expect = 0.13
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 78 IPPLVKLLGHESPDVFRNACGALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEV 137
L +LL + ++ L + + L I +
Sbjct: 21 DDELFRLLDDHNSLKRISSARVL-------------QLRGGQDAVRLAIEFCSDK-NYIR 66
Query: 138 KELVTGVLWNLSSCEDLKKSIIDDGLQVVVNH 169
+++ +L + C+ + ++ + + +N
Sbjct: 67 RDIGAFILGQIKICKKCEDNVFNILNNMALND 98
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 30.1 bits (66), Expect = 0.35
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 22/145 (15%)
Query: 35 NLTEVISFLSNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHES-PDVF 93
L ++ +P+ + A +L+ + P + L ++L + V
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVA 53
Query: 94 RNACG-ALRNLSYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCE 152
R A G ++N + D + + I A + V + + E
Sbjct: 54 RVAAGLQIKNSLTSKDPDIKAQYQQRWLAID-----------ANARREVKNYVLHTLGTE 102
Query: 153 DLKKSIIDDGLQVVVNHIIIPHSGW 177
+ S + + IP + W
Sbjct: 103 TYRPSSASQCVAGIACA-EIPVNQW 126
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 1.1
Identities = 27/252 (10%), Positives = 69/252 (27%), Gaps = 20/252 (7%)
Query: 44 SNPNNVIKANAAAYLQHLCYMDDPNKQKTRSLGGIPPLVKLLGHESPDVFRNACGALRNL 103
+ + A + D +V LL + V A + L
Sbjct: 152 TMDSVKQSAALCLLRLYRTSPDL-----VPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 206
Query: 104 SYGRQNDENKRAIKNAGGIPLLINLLRKTADAEVKELVTGVLWNLSSCEDLKKSIIDDGL 163
+ ++N E + + L ++ L + + +L + + + K +
Sbjct: 207 A--QKNPEEFKTS-----VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 259
Query: 164 QVVVNHIIIPHSGWDPVSAGETCWSTIFRNTSGVLRNASSAGEYARKKLRECEGLIDSLL 223
+ + + ++ NA +A + L +LL
Sbjct: 260 YPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL 319
Query: 224 YVVKSAIEKSNIGNKSVENCVCILRNLSFRCQEVEDPNY---DKHPVVSQSRTSPQAKGK 280
+ + + + ++ L ++ V++ +T
Sbjct: 320 VRACNQLGQ-FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD---- 374
Query: 281 SNIWNRPIDLLS 292
++ R +DLL
Sbjct: 375 VSVRQRAVDLLY 386
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 26.9 bits (59), Expect = 3.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 260 PNYDKHPVVSQSRTSPQAKGKSNIWNRPIDLL 291
PN +HP+V + R + W +D +
Sbjct: 792 PNLSRHPIVGKERANSS---AEEPWPAILDQI 820
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
synthase (DAHP synthase, AroG) {Escherichia coli,
phenylalanine-regulated isozyme [TaxId: 562]}
Length = 343
Score = 25.6 bits (56), Expect = 9.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 200 NASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSN 234
+ +A EYA + L E L D L V++ EK
Sbjct: 58 DPVAAKEYATRLLALREELKDELEIVMRVYFEKPR 92
>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal
domain {Influenza A virus [TaxId: 11320]}
Length = 127
Score = 24.4 bits (53), Expect = 9.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 75 LGGIPPLVKLLGHESPDVFRNACGAL 100
+G I PL L GH + DV +NA G L
Sbjct: 79 VGEISPLPSLPGHTAEDV-KNAVGVL 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,465
Number of extensions: 48810
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 32
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)