BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15594
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UQB3|CTND2_HUMAN Catenin delta-2 OS=Homo sapiens GN=CTNND2 PE=1 SV=3
Length = 1225
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 37/140 (26%)
Query: 1 MRDLVQKLPSGNAQHDQGT---SDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLR 57
MRDLV +LP GN ++ + SDDT+ AV TL+EVI KN E NA
Sbjct: 934 MRDLVHRLPGGNNSNNTASKAMSDDTVTAVCCTLHEVITKNME---NA------------ 978
Query: 58 ECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQ 116
K+L ++GG+E+L+ I+K + K++P+V+K A QVL +MWQ++
Sbjct: 979 ------------------KALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYR 1020
Query: 117 ELREVYKKHGWKEQDFVTKT 136
+LR +YKK GW + FV +
Sbjct: 1021 DLRSLYKKDGWSQYHFVASS 1040
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNIT 91
++V++ RN SSAGE AR+++REC+GL D+LLYV++SA+ S ++S VE + I
Sbjct: 709 SQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCIL 768
Query: 92 K 92
+
Sbjct: 769 R 769
>sp|Q68FH0|PKP4_MOUSE Plakophilin-4 OS=Mus musculus GN=Pkp4 PE=1 SV=1
Length = 1190
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 36/135 (26%)
Query: 1 MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
MRDLV +LP GN SD+T+AA+ L+EV KN E NA
Sbjct: 913 MRDLVNRLPGGNGPSI--LSDETVAAICCALHEVTSKNME---NA--------------- 952
Query: 61 GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELR 119
K+L +SGG+E+L+NITK R + + +V+K A QVL T+WQ+++LR
Sbjct: 953 ---------------KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLR 997
Query: 120 EVYKKHGWKEQDFVT 134
+YKK GW + F+T
Sbjct: 998 SIYKKDGWNQNHFIT 1012
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLM 88
V++ RN SSAGE ARK++R CEGL+DSLLYV+ + + S +S VE +
Sbjct: 688 VLRNTTGCLRNLSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCV 742
>sp|Q99569|PKP4_HUMAN Plakophilin-4 OS=Homo sapiens GN=PKP4 PE=1 SV=2
Length = 1192
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 36/135 (26%)
Query: 1 MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
MRDLV +LP GN SD+T+AA+ L+EV KN E NA
Sbjct: 914 MRDLVNRLPGGNG--PSVLSDETMAAICCALHEVTSKNME---NA--------------- 953
Query: 61 GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQELR 119
K+L +SGG+E+L+NITK R + + +V+K A QVL T+WQ+++LR
Sbjct: 954 ---------------KALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLR 998
Query: 120 EVYKKHGWKEQDFVT 134
+YKK GW + F+T
Sbjct: 999 SIYKKDGWNQNHFIT 1013
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLM 88
V++ RN SSAGE ARK++R CEGL+DSLLYV+ + + S +S VE +
Sbjct: 689 VLRNTTGCLRNLSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCV 743
>sp|O35927|CTND2_MOUSE Catenin delta-2 OS=Mus musculus GN=Ctnnd2 PE=1 SV=1
Length = 1247
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 37/140 (26%)
Query: 1 MRDLVQKLPSGNAQHD---QGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLR 57
MRDLV +LP GN ++ + SDDT+ AV TL+EVI KN E NA
Sbjct: 956 MRDLVHRLPGGNNSNNSGSKAMSDDTVTAVCCTLHEVITKNME---NA------------ 1000
Query: 58 ECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQR-QKYTPRVLKFAGQVLFTMWQHQ 116
K+L ++GG+E+L+ I+K + K++P+V+K A QVL +MWQ++
Sbjct: 1001 ------------------KALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYR 1042
Query: 117 ELREVYKKHGWKEQDFVTKT 136
+LR +YKK GW + FV +
Sbjct: 1043 DLRSLYKKDGWSQYHFVASS 1062
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNIT 91
++V++ RN SSAGE AR+++REC+GL D+LLYV++SA+ S ++S VE + I
Sbjct: 706 SQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCIL 765
Query: 92 K 92
+
Sbjct: 766 R 766
>sp|Q9U308|JAC1_CAEEL Juxtamembrane domain-associated catenin OS=Caenorhabditis elegans
GN=jac-1 PE=1 SV=2
Length = 1254
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 42/165 (25%)
Query: 1 MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
+RD + KLP + SD TI AVL L E+++ +A ++
Sbjct: 1058 LRDFLDKLPEPGSPRRSAISDQTIGAVLGILFEIVRSSAAYT------------------ 1099
Query: 61 GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
K + E G ++L +++ Y+ RV K+A QVL+ MWQH+EL +
Sbjct: 1100 ---------------KDVHELKGTDKLRALSRSYPTYSHRVCKYASQVLYVMWQHKELHD 1144
Query: 121 VYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTR 165
+K+ G KE DF + T AR +STL RP++SQG R
Sbjct: 1145 GFKRSGLKEADFYSGT--ARRGD-------SSTLARPISSQGRER 1180
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVE 85
+ K + RN S+A + AR++LR+ LI++L++ + AI+KS ++S VE
Sbjct: 847 LFKNSTGVLRNVSAASQQARRRLRDIPNLIEALVHFLTHAIQKSQVDSPTVE 898
>sp|P30999|CTND1_MOUSE Catenin delta-1 OS=Mus musculus GN=Ctnnd1 PE=1 SV=2
Length = 938
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 39/189 (20%)
Query: 3 DLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGL 62
+LV+ LP G S+DT+ ++L T+NEVI +N E A KKLRE +
Sbjct: 754 NLVKNLPGGQQNSSWNFSEDTVVSILNTINEVIAENLE-----------AAKKLRETQ-- 800
Query: 63 IDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVY 122
G+E+L+ I K + + + ++ A VL T+W ++ELR+
Sbjct: 801 --------------------GIEKLVLINKSGNR-SEKEVRAAALVLQTIWGYKELRKPL 839
Query: 123 KKHGWKEQDF-VTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNMEA- 180
+K GWK+ DF V A+R+ +S + +STL +Q + DR + P NM +
Sbjct: 840 EKEGWKKSDFQVNLNNASRSQSSHSYD--DSTLPLIDRNQKSDKKPDRE-EIPMSNMGSN 896
Query: 181 SRSLIQNYT 189
++SL NY+
Sbjct: 897 TKSLDNNYS 905
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVER----LMN 89
V+ A RN SS AR+KLREC+GL+D+L+++V++ I + +S VE L N
Sbjct: 526 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 585
Query: 90 ITKQRQKYTPRVLKF 104
++ Q + P+ ++
Sbjct: 586 LSYQVHREIPQAERY 600
>sp|O60716|CTND1_HUMAN Catenin delta-1 OS=Homo sapiens GN=CTNND1 PE=1 SV=1
Length = 968
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 34/130 (26%)
Query: 3 DLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGL 62
+LV+ LP G S+DT+ ++L T+NEVI +N E A KKLRE +
Sbjct: 754 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-----------AAKKLRETQ-- 800
Query: 63 IDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVY 122
G+E+L+ I K + + + ++ A VL T+W ++ELR+
Sbjct: 801 --------------------GIEKLVLINKSGNR-SEKEVRAAALVLQTIWGYKELRKPL 839
Query: 123 KKHGWKEQDF 132
+K GWK+ DF
Sbjct: 840 EKEGWKKSDF 849
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVER----LMN 89
V+ A RN SS AR+KLREC+GL+D+L+++V++ I + +S VE L N
Sbjct: 526 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 585
Query: 90 ITKQRQKYTPRVLKF 104
++ Q + P+ ++
Sbjct: 586 LSYQVHREIPQAERY 600
>sp|O35116|CTND2_RAT Catenin delta-2 (Fragment) OS=Rattus norvegicus GN=Ctnnd2 PE=1 SV=1
Length = 264
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 32 NEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNIT 91
++V++ RN SSAGE AR+++REC+GL D+LLYV++SA+ S ++S VE + I
Sbjct: 147 SQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCIL 206
Query: 92 K 92
+
Sbjct: 207 R 207
>sp|P98203|ARVC_MOUSE Armadillo repeat protein deleted in velo-cardio-facial syndrome
homolog OS=Mus musculus GN=Arvcf PE=1 SV=2
Length = 962
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITK 92
V K + RN SS G AR++LRECEGL+D+LL+ ++SA+ + ++ VE + I +
Sbjct: 520 VFKNTSGCLRNVSSDGAEARRRLRECEGLVDALLHALQSAVGRKDTDNKSVENCVCIMR 578
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 21 DDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLE 80
+DT+ AVL T++E++ + + +R SLL+
Sbjct: 774 EDTVVAVLNTIHEIVSDSLDNAR---------------------------------SLLQ 800
Query: 81 SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVAAR 140
+ GV L+ + Q R K A VL T+W ++ELR ++ GW + F + + A
Sbjct: 801 ARGVPALVALVASSQSV--REAKAASHVLQTVWSYKELRGALQRDGWTKSRFQSASTAKG 858
Query: 141 NAG-PNSPNNANSTL 154
G P+S +STL
Sbjct: 859 PKGTPSSGGFDDSTL 873
>sp|Q8AXM9|CTND1_XENLA Catenin delta-1 OS=Xenopus laevis GN=ctnnd1 PE=1 SV=1
Length = 859
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 34/118 (28%)
Query: 21 DDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLE 80
+DT V+ T++EVI N E A K+LR E
Sbjct: 692 EDTNVCVINTIHEVISGNLE-----------AAKRLR----------------------E 718
Query: 81 SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVA 138
S G+ERL+ I K + + R ++ AG L T+W ++ELR +K GWK+ DF T A
Sbjct: 719 SQGIERLVLINKGGGR-SEREIRAAGFCLQTIWGYKELRRPLEKDGWKKSDFQVSTAA 775
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 43 RNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVER----LMNITKQRQKYT 98
RN SS AR+K+RECEGL+DS++++++S + L++S +E L NI+ +
Sbjct: 465 RNISSERSEARRKMRECEGLVDSVVHILRSEVSHGLVDSKLLENVVCLLRNISYHVHREI 524
Query: 99 PRVLKF 104
P K+
Sbjct: 525 PHAEKY 530
>sp|O00192|ARVC_HUMAN Armadillo repeat protein deleted in velo-cardio-facial syndrome
OS=Homo sapiens GN=ARVCF PE=1 SV=1
Length = 962
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITK 92
V K + RN SS G AR++LRECEGL+D+LL+ ++SA+ + ++ VE + I +
Sbjct: 518 VFKNTSGCLRNVSSDGAEARRRLRECEGLVDALLHALQSAVGRKDTDNKSVENCVCIMR 576
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 52/185 (28%)
Query: 1 MRDLVQKLPSGNAQHDQGTS--DDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRE 58
M +LV+ + + A G +DT+ AVL T++E++ + + +R
Sbjct: 751 MAELVRNVRNAQAPPRPGACLEEDTVVAVLNTIHEIVSDSLDNAR--------------- 795
Query: 59 CEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQEL 118
SLL++ GV L+ + Q R K A VL T+W ++EL
Sbjct: 796 ------------------SLLQARGVPALVALVASSQSV--REAKAASHVLQTVWSYKEL 835
Query: 119 REVYKKHGWKEQDFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQNM 178
R +K GW + F ++ AA GP S GG ++D T+ ++++
Sbjct: 836 RGTLQKDGWTKARF--QSAAATAKGPKG-----------ALSPGG--FDDSTLPLVDKSL 880
Query: 179 EASRS 183
E ++
Sbjct: 881 EGEKT 885
>sp|Q99959|PKP2_HUMAN Plakophilin-2 OS=Homo sapiens GN=PKP2 PE=1 SV=2
Length = 881
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 41 FSRNASSAGEYARKKLRECEGLID--------------SLLYVVKSAIEKS------LLE 80
SRN S E A++ L + +I S Y + + I+ S LL
Sbjct: 756 LSRNLSLQNEIAKETLPDLVSIIPDTVPSTDLLIETTASACYTLNNIIQNSYQNARDLLN 815
Query: 81 SGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQDFVTKTVA 138
+GG++++M I+ + + K A +L+++W H EL YKK +K+ DFV A
Sbjct: 816 TGGIQKIMAISAGDAYASNKASKAASVLLYSLWAHTELHHAYKKAQFKKTDFVNSRTA 873
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 43 RNASSAGEYARKKLRECEGLIDSLLYVVKSAI 74
RN SSAG RK +R C+GLIDSL++ V+ I
Sbjct: 563 RNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 594
>sp|Q9Y446|PKP3_HUMAN Plakophilin-3 OS=Homo sapiens GN=PKP3 PE=1 SV=1
Length = 797
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 29 ATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLM 88
A+ E+ F RN SSA + R+K+REC GL+D+L+ + A++ E VE +
Sbjct: 469 ASEAEIFYNATGFLRNLSSASQATRQKMRECHGLVDALVTSINHALDAGKCEDKSVENAV 528
Query: 89 NITK 92
+ +
Sbjct: 529 CVLR 532
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 67 LYVVKSAIEKSLLESGGVERLMNITKQRQKY-TPRVLKFAGQVLFTMWQHQELREVYKKH 125
L V + LL G+ +L+ I K+R + + + A +L +WQ+ +L ++
Sbjct: 728 LVVASPIAARDLLYFDGLRKLIFIKKKRDSPDSEKSSRAASSLLANLWQYNKLHRDFRAK 787
Query: 126 GWKEQDFV 133
G++++DF+
Sbjct: 788 GYRKEDFL 795
>sp|Q08DQ0|PKP3_BOVIN Plakophilin-3 OS=Bos taurus GN=PKP3 PE=2 SV=1
Length = 793
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 29 ATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLM 88
A+ E+ F RN SSA + R+K+REC GL+D+L+ + A++ E VE +
Sbjct: 466 ASEAEIFYNATGFLRNLSSASQATRQKMRECHGLVDALVTYINHALDVGKCEDKSVENAV 525
Query: 89 NITK 92
+ +
Sbjct: 526 CVLR 529
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 67 LYVVKSAIEKSLLESGGVERLMNITKQRQKY-TPRVLKFAGQVLFTMWQHQELREVYKKH 125
L V + LL G+ +L+ I K+R + + + A +L +WQ+ +L ++
Sbjct: 724 LVVASPVAARDLLYFDGLRKLVFIKKKRDSPDSEKSSRAASSLLANLWQYNKLHRDFRAK 783
Query: 126 GWKEQDFV 133
G++++DF+
Sbjct: 784 GYRKEDFL 791
>sp|Q9QY23|PKP3_MOUSE Plakophilin-3 OS=Mus musculus GN=Pkp3 PE=1 SV=2
Length = 797
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 29 ATLNEVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLM 88
A+ E+ F RN SSA + R+K+REC GL+D+L+ + A++ E VE +
Sbjct: 469 ASEAEIFYNATGFLRNLSSASQATRQKMRECHGLVDALVTYINHALDVGKCEDKSVENAV 528
Query: 89 NITK 92
+ +
Sbjct: 529 CVLR 532
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 69 VVKSAIE-KSLLESGGVERLMNITKQRQKY-TPRVLKFAGQVLFTMWQHQELREVYKKHG 126
VV S I + LL G+ +L+ I K+R + + + A +L +WQ+ +L ++ G
Sbjct: 729 VVASPIAARDLLYFDGLRKLVFIKKKRDSPDSEKSSRAASSLLANLWQYSKLHRDFRAKG 788
Query: 127 WKEQDFV 133
++++DF+
Sbjct: 789 YRKEDFL 795
>sp|P97350|PKP1_MOUSE Plakophilin-1 OS=Mus musculus GN=Pkp1 PE=1 SV=1
Length = 728
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 43 RNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNI 90
RN SSA + R+ +R GLIDSL+ V++ + S + VE M I
Sbjct: 412 RNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCI 458
>sp|Q13835|PKP1_HUMAN Plakophilin-1 OS=Homo sapiens GN=PKP1 PE=1 SV=2
Length = 747
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 34 VIKKNAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVERLMNI 90
++ + A SR S+ + R+ +R GLIDSL+ V++ + S + VE M +
Sbjct: 422 LVPQRATSSRVNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 478
>sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis
thaliana GN=GWD3 PE=1 SV=1
Length = 1196
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 28 LATLNEVIKK--NAEFSRNASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESGGVE 85
LA+L E I K N+ +A R+K R CE ++ +V+ S +L GG +
Sbjct: 489 LASLRETIIKELNSGLRNDAPDTAIAMRQKWRLCEIGLEDYFFVLLSRFLNALETMGGAD 548
Query: 86 RLM------NITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKK-HGWKEQDFVTK 135
+L N+ VL QV + W+ +E + + W+E+D + K
Sbjct: 549 QLAKDVGSRNVASWNDPLDALVLGVH-QVGLSGWKQEECLAIGNELLAWRERDLLEK 604
>sp|P56112|Y175_HELPY Putative peptidyl-prolyl cis-trans isomerase HP_0175
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=HP_0175 PE=4 SV=1
Length = 299
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 10 SGNAQHDQGTSDDTIAAVLATLN--EVIKKNAEFSRNASSAGEYARKKLRECEGLIDSLL 67
+ NA H+ + D+ A VLAT++ + K + + + + ++ + K +E E LID
Sbjct: 27 ANNATHNTKKTTDSSAGVLATVDGRPITKSDFDMIKQRNPNFDFDKLKEKEKEALID--- 83
Query: 68 YVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYK 123
AI +L+E+ ++ T + + V K Q L W ++ EV K
Sbjct: 84 ----QAIRTALVENEAKTEKLDSTPEFKAMMEAVKK---QALVEFWAKKQAEEVKK 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,772,890
Number of Sequences: 539616
Number of extensions: 2542524
Number of successful extensions: 7303
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7252
Number of HSP's gapped (non-prelim): 50
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)