RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15594
         (200 letters)



>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 457

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 15/121 (12%), Positives = 40/121 (33%), Gaps = 37/121 (30%)

Query: 1   MRDLVQKLPSGNAQHDQGTSDDTIAAVLATLNEVIKKNAEFSRNASSAGEYARKKLRECE 60
             ++ + L S     +   S+D +++   T+  ++    + ++                 
Sbjct: 373 FPEVTRLLTSHT--GNTSNSEDILSSACYTVRNLMASQPQLAK----------------- 413

Query: 61  GLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELRE 120
                               S  +  ++N+ +     +P+  + A  +L  MW  +EL+ 
Sbjct: 414 ----------------QYFSSSMLNNIINLCRSSA--SPKAAEAARLLLSDMWSSKELQG 455

Query: 121 V 121
           V
Sbjct: 456 V 456


>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
          synthase (DAHP synthase, AroG) {Baker's yeast
          (Saccharomyces cerevisiae), tyrosine-regulated isozyme
          [TaxId: 4932]}
          Length = 346

 Score = 26.7 bits (59), Expect = 2.2
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 44 NASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESG 82
          +  +A EYA +  +  + L   L  ++++ +EK     G
Sbjct: 58 DLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVG 96


>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
           1496]}
          Length = 542

 Score = 26.1 bits (57), Expect = 3.1
 Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 71  KSAIEKSLLESGGVERLMNITKQRQKYTPRVLKFAGQVLFTMWQHQELREVYKKHGWKEQ 130
            S++     E   +E +M   +   +YT        + +    Q      +  K    E 
Sbjct: 304 PSSVTVDFWEMTKLEAIMKYKEYIPEYTSEHFDMLDEEV----QSSFESVLASKSDKSEI 359

Query: 131 DFVTKTVAARNAGPNSPNNANSTLNRPMASQGGTRYEDRTIQRPNQN---MEASRSLIQN 187
                 + A         N+   +N+ + S   +   +  +++       +  S +   +
Sbjct: 360 FSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIENRYKILNNSLNPAIS 419

Query: 188 YTNYFTST 195
             N F +T
Sbjct: 420 EDNDFNTT 427


>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
          synthase (DAHP synthase, AroG) {Escherichia coli,
          phenylalanine-regulated isozyme [TaxId: 562]}
          Length = 343

 Score = 25.9 bits (57), Expect = 3.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 44 NASSAGEYARKKLRECEGLIDSLLYVVKSAIEKSLLESG 82
          +  +A EYA + L   E L D L  V++   EK     G
Sbjct: 58 DPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVG 96


>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
          [TaxId: 5691]}
          Length = 415

 Score = 25.5 bits (55), Expect = 5.9
 Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 20 SDDT-IAAVLATLNEVIKKNA 39
          ++D  I + L TL +V+ +  
Sbjct: 31 TNDYRIRSALPTLKKVLTEGG 51


>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
           oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 409

 Score = 24.9 bits (54), Expect = 7.0
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 14/66 (21%)

Query: 84  VERLMNITKQRQKYT-------PRVLK-------FAGQVLFTMWQHQELREVYKKHGWKE 129
           + R   + +   K+         R            G+ L      + L E Y+  GW E
Sbjct: 322 LIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDE 381

Query: 130 QDFVTK 135
           +    K
Sbjct: 382 RGIPKK 387


>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 86

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 58  ECEGLIDSLLYVVKSAIEKSLLESGGVERLMNITKQRQKYTPRV---LKFAGQVLFTMWQ 114
             +  ++     ++  I K L    G E L   T    +    V   L+ + + L  +  
Sbjct: 18  GVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLL-- 75

Query: 115 HQELRE 120
           HQ+L+E
Sbjct: 76  HQQLQE 81


>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
          (Plasmodium falciparum) [TaxId: 5833]}
          Length = 417

 Score = 24.7 bits (53), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 20 SDDT-IAAVLATLNEVIKKNA 39
           D   I A L T+N + K+ A
Sbjct: 37 KDTNRITATLPTINHLKKEGA 57


>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 413

 Score = 24.7 bits (53), Expect = 9.8
 Identities = 3/21 (14%), Positives = 10/21 (47%), Gaps = 1/21 (4%)

Query: 20 SDDT-IAAVLATLNEVIKKNA 39
          +++  I A + ++   +   A
Sbjct: 31 TNNARIKAAVPSIKFCLDDGA 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 663,334
Number of extensions: 27111
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 10
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)