BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15595
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O05731|Y889_HELPY Probable iron chelatin transport system permease protein HP_0889
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=HP_0889 PE=3 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 124 KKQTLNPKSSIFH-AELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNPLVQS 182
++ LN K+ H EL ++S + I+ + A+++ SLS + NPLV
Sbjct: 32 QEVCLNVKNHFLHNEELSSLSIIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDP 91
Query: 183 IHEEISTGDLKNVSLNLHEVERNRIICHIFGSWLS 217
IS+G + V++ + VE N I FG+ L+
Sbjct: 92 FLLGISSGAMLGVAMAIAVVESNIAILAFFGAILA 126
>sp|Q9ZKW2|Y889_HELPJ Probable iron chelatin transport system permease protein jhp_0822
OS=Helicobacter pylori (strain J99) GN=jhp_0822 PE=3
SV=1
Length = 326
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 124 KKQTLNPKSSIFH-AELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNPLVQS 182
++ LN K+ H EL ++S + I+ + A+++ SLS + NPLV
Sbjct: 32 QEVCLNVKNHFLHNEELSSLSVIILEIRLPRVILALLVGASLSGSGVVMQTILRNPLVDP 91
Query: 183 IHEEISTGDLKNVSLNLHEVERNRIICHIFGS 214
IS+G + V++ + VE N I FG+
Sbjct: 92 FLLGISSGAMLGVAMAIAVVESNIAILAFFGA 123
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 43 IPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMNENYGDFVQVYT 102
+PF K + E ++ W + L +Y HQV +++ + E + +YT
Sbjct: 575 VPFTKEQVMWEMQKGWYYSW----LPEIVYT-----HQVVHDDWRMKLVEEPTSGITIYT 625
Query: 103 DGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFH--AELLAISDAVSTIKSQSIGEAVII 160
DG K + A+V K++ L P + H AE +AI A+ + + + I+
Sbjct: 626 DGGKQNGEGIAAYVTSNGR-TKQKRLGP---VTHQVAERMAIQMALEDTRDKQVN---IV 678
Query: 161 SDSLSALQAISS-------MSHSNPLVQSIHEE 186
+DS + I+ S P++Q+I E+
Sbjct: 679 TDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK 711
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 43 IPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMNENYGDFVQVYT 102
+PF K + E ++ W + L +Y HQV +++ + E + +YT
Sbjct: 575 VPFTKEQVMWEMQKGWYYSW----LPEIVYT-----HQVVHDDWRMKLVEEPTSGITIYT 625
Query: 103 DGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFH--AELLAISDAVSTIKSQSIGEAVII 160
DG K + A+V K++ L P + H AE +AI A+ + + + I+
Sbjct: 626 DGGKQNGEGIAAYVTSNGR-TKQKRLGP---VTHQVAERMAIQMALEDTRDKQVN---IV 678
Query: 161 SDSLSALQAISS-------MSHSNPLVQSIHEE 186
+DS + I+ S P++Q+I E+
Sbjct: 679 TDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK 711
>sp|B2XWR3|RK22_FAGEA 50S ribosomal protein L22, chloroplastic OS=Fagopyrum esculentum
subsp. ancestrale GN=rpl22 PE=3 SV=1
Length = 150
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 12 RINNPPYKVLYENSTKLNPTVGIQRELLM------NDIPFHKVILQREPKESWLHKKPSC 65
R P +K++Y + G ++E L+ N P K + R S+L KKP+C
Sbjct: 50 RACYPIFKIIYSAAANAKHNKGFEKEDLLVWKAEVNKGPTRKKLKPRARGRSYLIKKPTC 109
Query: 66 NLSLTLYKKDGMPHQVFQQEFQR 88
++S+ L KD ++ ++ + R
Sbjct: 110 HISVVL--KDISYYEAYETLYNR 130
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 95 GDFVQVYTDGSKSDSS-----VGCAFVIPQLHIVKKQTLNP-KSSIFHAELLAISDAVST 148
GDFV VYTDG S + G H + P + + AE+ A A+
Sbjct: 137 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQ 196
Query: 149 IKSQSIGEAVIISDSLSALQAIS 171
K+Q+I + V+ +DS+ + I+
Sbjct: 197 AKTQNINKLVLYTDSMFTINGIT 219
>sp|Q6FQJ4|NRM1_CANGA Transcription factor NRM1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NRM1 PE=3
SV=1
Length = 293
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 77 MPHQVFQQEFQRNMNENYGDFVQVYTDGS---KSDSSVGCAFVIPQLH--IVKKQTLNPK 131
+P Q + + N+ + + T+GS K+ +G +P +H I +K + NP
Sbjct: 8 LPLQEYTKSAMNNLATSGPVIMTSLTEGSSLSKNSVGMGLGMKLPSIHSLINQKNSYNPF 67
Query: 132 SSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163
+ H++ ++ D + S+ +G + +DS
Sbjct: 68 QTTLHSKSFSVGDPIKANNSKPLGVTLTSTDS 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,088,896
Number of Sequences: 539616
Number of extensions: 2969319
Number of successful extensions: 8665
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 8398
Number of HSP's gapped (non-prelim): 290
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)