Query psy15595
Match_columns 221
No_of_seqs 140 out of 228
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 16:36:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00075 RNase_H: RNase H; In 99.6 9.9E-15 2.2E-19 113.8 8.1 107 96-211 2-121 (132)
2 cd06222 RnaseH RNase H (RNase 99.5 9.7E-13 2.1E-17 97.9 13.0 102 99-204 1-112 (130)
3 PRK13907 rnhA ribonuclease H; 99.5 1.3E-12 2.9E-17 103.0 12.5 107 98-205 2-112 (128)
4 PRK08719 ribonuclease H; Revie 99.4 3.6E-12 7.7E-17 104.6 12.6 102 96-206 3-129 (147)
5 PRK00203 rnhA ribonuclease H; 99.4 5.2E-12 1.1E-16 103.0 12.3 102 97-205 3-123 (150)
6 PRK06548 ribonuclease H; Provi 99.4 9.2E-12 2E-16 104.0 12.1 100 96-203 4-121 (161)
7 COG0328 RnhA Ribonuclease HI [ 99.3 2.3E-11 4.9E-16 101.1 9.9 108 96-204 2-125 (154)
8 PRK07238 bifunctional RNase H/ 99.2 4.9E-10 1.1E-14 103.2 13.2 105 98-204 3-116 (372)
9 PRK07708 hypothetical protein; 99.1 6.4E-10 1.4E-14 97.0 12.6 107 95-204 71-192 (219)
10 KOG3752|consensus 99.1 8.9E-10 1.9E-14 102.1 10.1 108 95-204 210-345 (371)
11 PF13456 RVT_3: Reverse transc 98.8 2.4E-08 5.1E-13 72.0 7.4 73 135-208 2-75 (87)
12 PF05380 Peptidase_A17: Pao re 92.5 0.68 1.5E-05 38.1 7.6 54 96-151 80-143 (159)
13 PRK08298 cytidine deaminase; V 72.6 10 0.00022 30.9 5.5 58 101-163 19-78 (136)
14 COG0295 Cdd Cytidine deaminase 65.9 18 0.0004 29.6 5.7 78 110-198 27-106 (134)
15 PF00336 DNA_pol_viral_C: DNA 64.0 11 0.00024 33.4 4.3 80 77-167 68-153 (245)
16 PRK06848 hypothetical protein; 59.7 29 0.00064 28.2 5.8 55 108-163 26-82 (139)
17 PRK05578 cytidine deaminase; V 52.6 44 0.00095 26.9 5.7 53 110-163 25-79 (131)
18 cd01285 nucleoside_deaminase N 51.5 76 0.0016 24.1 6.7 55 109-163 17-74 (109)
19 TIGR01354 cyt_deam_tetra cytid 43.8 74 0.0016 25.2 5.7 53 110-163 22-76 (127)
20 COG0590 CumB Cytosine/adenosin 42.7 86 0.0019 25.7 6.1 52 110-161 29-83 (152)
21 KOG1812|consensus 39.9 47 0.001 31.5 4.6 74 132-205 47-122 (384)
22 TIGR03628 arch_S11P archaeal r 38.2 2E+02 0.0044 22.8 8.1 76 90-174 7-97 (114)
23 PRK12411 cytidine deaminase; P 35.3 1.2E+02 0.0027 24.3 5.8 53 110-163 25-79 (132)
24 PF00383 dCMP_cyt_deam_1: Cyti 35.2 91 0.002 22.8 4.7 52 109-161 24-78 (102)
25 cd01284 Riboflavin_deaminase-r 32.5 1.9E+02 0.004 22.6 6.3 46 110-161 20-66 (115)
26 cd01286 deoxycytidylate_deamin 30.9 1.6E+02 0.0035 23.3 5.8 28 132-161 66-93 (131)
27 PRK10860 tRNA-specific adenosi 24.8 1.7E+02 0.0038 24.5 5.2 40 109-149 33-75 (172)
28 cd01283 cytidine_deaminase Cyt 24.8 2.9E+02 0.0063 20.8 6.1 48 101-150 12-61 (112)
29 COG3341 Predicted double-stran 24.3 59 0.0013 28.9 2.3 41 134-174 108-153 (225)
30 COG1930 CbiN ABC-type cobalt t 23.1 40 0.00086 26.2 0.9 14 6-19 45-58 (97)
31 PTZ00441 sporozoite surface pr 20.5 2.7E+02 0.0059 28.1 6.3 37 155-203 151-187 (576)
32 PF07859 Abhydrolase_3: alpha/ 20.4 1.8E+02 0.0039 23.5 4.4 53 111-170 28-86 (211)
33 cd01123 Rad51_DMC1_radA Rad51_ 20.2 4.9E+02 0.011 21.6 7.1 68 137-204 97-171 (235)
34 CHL00041 rps11 ribosomal prote 20.0 4.4E+02 0.0095 20.7 6.6 75 89-171 17-96 (116)
No 1
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.56 E-value=9.9e-15 Score=113.79 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=78.7
Q ss_pred CceEEEecCCCCC--CceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhC-
Q psy15595 96 DFVQVYTDGSKSD--SSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS- 172 (221)
Q Consensus 96 ~~~~IYTDGSK~~--~~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n- 172 (221)
+.+.||||||... +..|+|+++... ....+.++ ..|++.||++||.+||+.+ ....++|+|||++++..|..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~-~~~~~~~~-~~s~~~aEl~Ai~~AL~~~---~~~~v~I~tDS~~v~~~l~~~ 76 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGG-RNFSFRLG-GQSNNRAELQAIIEALKAL---EHRKVTIYTDSQYVLNALNKW 76 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETT-EEEEEEEE-SECHHHHHHHHHHHHHHTH---STSEEEEEES-HHHHHHHHTH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECC-eEEEeccc-ccchhhhheehHHHHHHHh---hcccccccccHHHHHHHHHHh
Confidence 4689999999654 345777766433 34455666 8889999999999999944 33999999999999998876
Q ss_pred ----CCC-C--c-hHHHHHHHHHHhccccCceEEEEEEecCcch--hhh
Q psy15595 173 ----MSH-S--N-PLVQSIHEEISTGDLKNVSLNLHEVERNRII--CHI 211 (221)
Q Consensus 173 ----~~~-~--~-~ii~~I~~~i~~l~~~gi~V~l~WV~r~~~~--~~~ 211 (221)
... . . ++...|.+++ .++..|.|+|||...-. +|+
T Consensus 77 ~~~~~~~~~~~~~~i~~~i~~~~----~~~~~v~~~~V~~H~~~~~~N~ 121 (132)
T PF00075_consen 77 LHGNGWKKTSNGRPIKNEIWELL----SRGIKVRFRWVPGHSGVPQGNE 121 (132)
T ss_dssp HHHTTSBSCTSSSBHTHHHHHHH----HHSSEEEEEESSSSSSSHHHHH
T ss_pred ccccccccccccccchhheeecc----ccceEEeeeeccCcCCCchhHH
Confidence 221 1 2 5666666666 55888999999988554 444
No 2
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.48 E-value=9.7e-13 Score=97.91 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=78.3
Q ss_pred EEEecCCCCCC--ceeEEEEEeeCCeEEEE---EcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCC
Q psy15595 99 QVYTDGSKSDS--SVGCAFVIPQLHIVKKQ---TLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM 173 (221)
Q Consensus 99 ~IYTDGSK~~~--~vG~Avi~~~~~~~~~~---kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~ 173 (221)
.+|||||...+ ++|+|++..+.+....+ ......|++.||+.|++.||+++...+..++.|+|||+.++..+.+.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999999875 68888888555433222 22257899999999999999999988899999999999999999976
Q ss_pred CC--Cc---hHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 174 SH--SN---PLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 174 ~~--~~---~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
.. .. .+...|++.+ .++..+.++||+|
T Consensus 81 ~~~~~~~~~~~~~~i~~~~----~~~~~~~i~~v~~ 112 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALL----KRFHKVRFEWVPG 112 (130)
T ss_pred ccCCChhhHHHHHHHHHHH----hCCCeEEEEEcCC
Confidence 53 22 3444444433 5667899999999
No 3
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.46 E-value=1.3e-12 Score=102.96 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=77.1
Q ss_pred eEEEecCCCCCC--ceeEEEEEeeCCeEEEEE-cCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCCC
Q psy15595 98 VQVYTDGSKSDS--SVGCAFVIPQLHIVKKQT-LNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMS 174 (221)
Q Consensus 98 ~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~k-L~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~~ 174 (221)
++||||||...+ ..|+|+++.+.+-..... ....+|...||++|++.||+.+...+..++.|+|||+.++..++...
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~ 81 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEY 81 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHH
Confidence 579999998764 588898885554322222 23457899999999999999999998899999999999999998643
Q ss_pred C-CchHHHHHHHHHHhccccCceEEEEEEecC
Q psy15595 175 H-SNPLVQSIHEEISTGDLKNVSLNLHEVERN 205 (221)
Q Consensus 175 ~-~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~ 205 (221)
. ...+...+++....+ .+-..+.+.||+|.
T Consensus 82 ~~~~~~~~l~~~~~~l~-~~f~~~~~~~v~r~ 112 (128)
T PRK13907 82 AKNKMFAPLLEEALQYI-KSFDLFFIKWIPSS 112 (128)
T ss_pred hcChhHHHHHHHHHHHH-hcCCceEEEEcCch
Confidence 2 223333333333333 33345678999994
No 4
>PRK08719 ribonuclease H; Reviewed
Probab=99.41 E-value=3.6e-12 Score=104.58 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=70.9
Q ss_pred CceEEEecCCCCCCc-----eeEEEEEeeC--CeE--EEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHH
Q psy15595 96 DFVQVYTDGSKSDSS-----VGCAFVIPQL--HIV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSA 166 (221)
Q Consensus 96 ~~~~IYTDGSK~~~~-----vG~Avi~~~~--~~~--~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~Sa 166 (221)
+.+.||||||+..++ .|+|+++.+. ... ....+...+|..+||+.||..||+.+.+. .+|+|||+.+
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 568999999997653 4888876443 222 33345566899999999999999998653 3799999999
Q ss_pred HHHHh--------CCCC-C-------chHHHHHHHHHHhccccCceEEEEEEecCc
Q psy15595 167 LQAIS--------SMSH-S-------NPLVQSIHEEISTGDLKNVSLNLHEVERNR 206 (221)
Q Consensus 167 L~aI~--------n~~~-~-------~~ii~~I~~~i~~l~~~gi~V~l~WV~r~~ 206 (221)
+++|. |... . .++.+.|.. +..+ ..|.|+||++-.
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~----l~~~-~~i~~~~VkgH~ 129 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDE----LRAR-KYVEVEKVTAHS 129 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHH----HhCC-CcEEEEEecCCC
Confidence 99993 3221 1 233444433 3333 458999998743
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.39 E-value=5.2e-12 Score=103.03 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=72.5
Q ss_pred ceEEEecCCCCCC--ceeEEEEEeeCCeEEEE-EcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhC-
Q psy15595 97 FVQVYTDGSKSDS--SVGCAFVIPQLHIVKKQ-TLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS- 172 (221)
Q Consensus 97 ~~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~-kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n- 172 (221)
.+.||||||+..+ ..|+|+++...+....+ ......|...||++|+.+||+.+.. ...+.|+|||+++++.|..
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 4789999999864 47788777544433222 2235678999999999999998854 4679999999999999984
Q ss_pred --------CCC-------CchHHHHHHHHHHhccccCceEEEEEEecC
Q psy15595 173 --------MSH-------SNPLVQSIHEEISTGDLKNVSLNLHEVERN 205 (221)
Q Consensus 173 --------~~~-------~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~ 205 (221)
+.. ..++.+.|..++.. ..|.|.||+--
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~-----~~v~~~wV~~H 123 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAALKR-----HQIKWHWVKGH 123 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHhcc-----CceEEEEecCC
Confidence 111 12455666554432 46899999843
No 6
>PRK06548 ribonuclease H; Provisional
Probab=99.36 E-value=9.2e-12 Score=103.97 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=71.2
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh--
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS-- 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~-- 171 (221)
..+.||||||+..+ ..|.|+++.+... . ..-....|...||++|+++||+.+. .....++|+|||++++++|.
T Consensus 4 ~~~~IytDGa~~gnpg~~G~g~~~~~~~~-~-~g~~~~~TNnraEl~Aii~aL~~~~-~~~~~v~I~TDS~yvi~~i~~W 80 (161)
T PRK06548 4 NEIIAATDGSSLANPGPSGWAWYVDENTW-D-SGGWDIATNNIAELTAVRELLIATR-HTDRPILILSDSKYVINSLTKW 80 (161)
T ss_pred CEEEEEEeeccCCCCCceEEEEEEeCCcE-E-ccCCCCCCHHHHHHHHHHHHHHhhh-cCCceEEEEeChHHHHHHHHHH
Confidence 45899999999875 4788888853321 1 1112457899999999999998664 34457999999999999998
Q ss_pred -------CCCC-------CchHHHHHHHHHHhccccCceEEEEEEe
Q psy15595 172 -------SMSH-------SNPLVQSIHEEISTGDLKNVSLNLHEVE 203 (221)
Q Consensus 172 -------n~~~-------~~~ii~~I~~~i~~l~~~gi~V~l~WV~ 203 (221)
+++. +.++.+.|..++.. . .|.|+||+
T Consensus 81 ~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~---~--~v~~~wVk 121 (161)
T PRK06548 81 VYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN---R--NIRMSWVN 121 (161)
T ss_pred HHHHHHCCCcccCCCccccHHHHHHHHHHHhc---C--ceEEEEEe
Confidence 3322 23566666555442 2 58999996
No 7
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.28 E-value=2.3e-11 Score=101.08 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=76.8
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeE--EEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~--~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~ 171 (221)
..+.||||||+..+ ..|.|+|....+.. .+..+. .+|...||++|+.+||+++.+.+...+.|+|||+.+++.|.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 35789999999976 36677776433332 233344 89999999999999999999989999999999999999998
Q ss_pred CC----CCCc--------hHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 172 SM----SHSN--------PLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 172 n~----~~~~--------~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
.+ .... --...+-..+..+..+--.|.++||+.
T Consensus 81 ~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkg 125 (154)
T COG0328 81 RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKG 125 (154)
T ss_pred HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeC
Confidence 33 1111 012233333444444444689999984
No 8
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.16 E-value=4.9e-10 Score=103.24 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=77.0
Q ss_pred eEEEecCCCCCC--ceeEEEEEeeCC---eEE--EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHH
Q psy15595 98 VQVYTDGSKSDS--SVGCAFVIPQLH---IVK--KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAI 170 (221)
Q Consensus 98 ~~IYTDGSK~~~--~vG~Avi~~~~~---~~~--~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI 170 (221)
+.||||||...+ ..|+|+++.+.+ ... ...++ .+|...||+.|++.||+++.+.+..++.|++||+.+++.+
T Consensus 3 ~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~i 81 (372)
T PRK07238 3 VVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQM 81 (372)
T ss_pred EEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 689999999876 588888885542 112 22344 6778899999999999999999889999999999999999
Q ss_pred hCCC-CCc-hHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 171 SSMS-HSN-PLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 171 ~n~~-~~~-~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
.... ..+ .+...+.++ ..+..+.-.|.+.||+|
T Consensus 82 ~~~~~~~~~~l~~~~~~i-~~l~~~f~~~~i~~v~r 116 (372)
T PRK07238 82 SGRWKVKHPDMKPLAAQA-RELASQFGRVTYTWIPR 116 (372)
T ss_pred CCCCccCChHHHHHHHHH-HHHHhcCCceEEEECCc
Confidence 8533 233 343333333 33334445689999999
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.14 E-value=6.4e-10 Score=96.98 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=77.1
Q ss_pred CCceEEEecCCCCC--CceeEEEEEeeC--CeEE----EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCc--EEEEeCcH
Q psy15595 95 GDFVQVYTDGSKSD--SSVGCAFVIPQL--HIVK----KQTLNPKSSIFHAELLAISDAVSTIKSQSIGE--AVIISDSL 164 (221)
Q Consensus 95 ~~~~~IYTDGSK~~--~~vG~Avi~~~~--~~~~----~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~--i~I~SDS~ 164 (221)
++.+.+|+|||... +++|+|+++.+. .... ...+...+|...||+.|++.||+.+.+.+.+. +.|++||+
T Consensus 71 p~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DSq 150 (219)
T PRK07708 71 PHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDSQ 150 (219)
T ss_pred CCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEeccH
Confidence 35699999999754 357777777432 2221 12466668999999999999999999987665 89999999
Q ss_pred HHHHHHhCCC-CCc----hHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 165 SALQAISSMS-HSN----PLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 165 SaL~aI~n~~-~~~----~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
.+++.+.... ..+ .+...+..++ +...+.+.+.||+|
T Consensus 151 lVi~qi~g~wk~~~~~l~~y~~~i~~l~---~~~~l~~~~~~VpR 192 (219)
T PRK07708 151 VVLNQLAGEWPCYDEHLNHWLDRIEQKL---KQLKLTPVYEPISR 192 (219)
T ss_pred HHHHHhCCCceeCChhHHHHHHHHHHHH---hhCCceEEEEECCc
Confidence 9999998542 333 3334444443 34455688999999
No 10
>KOG3752|consensus
Probab=99.06 E-value=8.9e-10 Score=102.11 Aligned_cols=108 Identities=22% Similarity=0.222 Sum_probs=83.8
Q ss_pred CCceEEEecCCCCCC-----ceeEEEEEeeCCe-EEEEEcC-CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHH
Q psy15595 95 GDFVQVYTDGSKSDS-----SVGCAFVIPQLHI-VKKQTLN-PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSAL 167 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~-----~vG~Avi~~~~~~-~~~~kL~-~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL 167 (221)
.+...+|||||...+ .+|+||+.++... .....+. .-.+.+.||+.||.+||+-|.+.+..+++|.|||+..+
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 344899999999875 4999999966644 4566665 67789999999999999999999999999999999999
Q ss_pred HHHhCCCC-----------Cc----------hHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 168 QAISSMSH-----------SN----------PLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 168 ~aI~n~~~-----------~~----------~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
++|+.+-. .+ +....+.++...+ .+..|.+.||+=
T Consensus 290 ~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~--~~~~vq~~~V~G 345 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEI--SNKKVQQEYVGG 345 (371)
T ss_pred HHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhh--ccCceEEEEecC
Confidence 99974321 11 2344455555554 577899999974
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=98.79 E-value=2.4e-08 Score=72.03 Aligned_cols=73 Identities=23% Similarity=0.204 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCCC-CCchHHHHHHHHHHhccccCceEEEEEEecCcch
Q psy15595 135 FHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMS-HSNPLVQSIHEEISTGDLKNVSLNLHEVERNRII 208 (221)
Q Consensus 135 ftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~~-~~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~~~~ 208 (221)
..||++|++.||+++.+.+.++++|.|||+.++..|+... ..+.+...++++...++. ...+.++||+|..-.
T Consensus 2 ~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~r~~N~ 75 (87)
T PF13456_consen 2 LEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDR-FWNVSVSHIPREQNK 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCC-CSCEEEEE--GGGSH
T ss_pred cHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhcc-ccceEEEEEChHHhH
Confidence 5799999999999999999999999999999999998663 334444444444443333 567899999998644
No 12
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=92.50 E-value=0.68 Score=38.06 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=36.0
Q ss_pred CceEEEecCCCCCCceeEEEEEee---CCeE--E---EEEc--CCCCchhHHHHHHHHHHHHHhhh
Q psy15595 96 DFVQVYTDGSKSDSSVGCAFVIPQ---LHIV--K---KQTL--NPKSSIFHAELLAISDAVSTIKS 151 (221)
Q Consensus 96 ~~~~IYTDGSK~~~~vG~Avi~~~---~~~~--~---~~kL--~~~~SIftAEl~AI~~AL~~~~~ 151 (221)
..+++|+|||+ .+.|+.++... .... . ..|+ -...||=.-|++|++.|.+++..
T Consensus 80 ~~L~~F~DAS~--~aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASE--SAYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeecccc--cceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46899999994 45666665532 1111 1 1122 13459999999999999999755
No 13
>PRK08298 cytidine deaminase; Validated
Probab=72.62 E-value=10 Score=30.91 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=38.8
Q ss_pred EecCCCCCCceeEEEEEeeCCeEEEEEc--CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 101 YTDGSKSDSSVGCAFVIPQLHIVKKQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 101 YTDGSK~~~~vG~Avi~~~~~~~~~~kL--~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
|...| +||+|+...++++-..... ..+..-..||..||..|+..= ......+.|.+|.
T Consensus 19 Y~PYS----~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~G-~~~~~~i~v~~~~ 78 (136)
T PRK08298 19 YPNGW----GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKLQ-KRVTHSICVAREN 78 (136)
T ss_pred cCCCC----ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHCC-CceEEEEEEEcCC
Confidence 55556 8999999977776555544 234445689999999998542 1223456667676
No 14
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=65.91 E-value=18 Score=29.58 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=47.5
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCCCCCchHHHHHHHHH
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNPLVQSIHEEI 187 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~~~~~~ii~~I~~~i 187 (221)
.||+++...++.+-...-.. .+.---.||..||..|+.- -......+++++|+ ..+-.+. ...++.+
T Consensus 27 ~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~-------~~~~sPC---G~CRQ~i 95 (134)
T COG0295 27 KVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADT-------GKPVSPC---GACRQVL 95 (134)
T ss_pred cEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCC-------CCCcCCc---HHHHHHH
Confidence 59999888665443322221 2223457999999999887 44556788999998 2222232 2355666
Q ss_pred HhccccCceEE
Q psy15595 188 STGDLKNVSLN 198 (221)
Q Consensus 188 ~~l~~~gi~V~ 198 (221)
.++......|.
T Consensus 96 ~Ef~~~d~~ii 106 (134)
T COG0295 96 AEFCGDDTLII 106 (134)
T ss_pred HHhcCCCceEE
Confidence 66665554443
No 15
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=63.98 E-value=11 Score=33.38 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=45.9
Q ss_pred CChHhHHHHHHHHhhhcc------CCceEEEecCCCCCCceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhh
Q psy15595 77 MPHQVFQQEFQRNMNENY------GDFVQVYTDGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIK 150 (221)
Q Consensus 77 t~p~~~r~~f~~~i~~~~------~~~~~IYTDGSK~~~~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~ 150 (221)
+-+..|+..+.....+-| ...-.||+|+.-+..+ +.+.....+..| ...--|.+||++|...|--++.
T Consensus 68 ~FS~~Yk~~L~kqy~~l~pvarqr~~lc~VfaDATpTgwg----i~i~~~~~~~Tf--s~~l~IhtaELlaaClAr~~~~ 141 (245)
T PF00336_consen 68 TFSPTYKAFLCKQYMNLYPVARQRPGLCQVFADATPTGWG----ISITGQRMRGTF--SKPLPIHTAELLAACLARLMSG 141 (245)
T ss_pred ecCHHHHHHHHHhhccccccccCCCCCCceeccCCCCcce----eeecCceeeeee--cccccchHHHHHHHHHHHhccC
Confidence 344556655543222222 2345899999865443 223233334334 2344599999999988776652
Q ss_pred hcCCCcEEEEeCcHHHH
Q psy15595 151 SQSIGEAVIISDSLSAL 167 (221)
Q Consensus 151 ~~~~~~i~I~SDS~SaL 167 (221)
. + .|.|||--++
T Consensus 142 ~----r-~l~tDnt~Vl 153 (245)
T PF00336_consen 142 A----R-CLGTDNTVVL 153 (245)
T ss_pred C----c-EEeecCcEEE
Confidence 2 3 4889987654
No 16
>PRK06848 hypothetical protein; Validated
Probab=59.73 E-value=29 Score=28.25 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=36.2
Q ss_pred CCceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 108 DSSVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 108 ~~~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
..+||+|+...++.+-...-.. .+..-..||..||..|+..=. .....+++.+++
T Consensus 26 ~f~VgAa~l~~~G~i~~G~NvEnas~~~tiCAEr~Ai~~av~~g~-~~i~~i~~v~~~ 82 (139)
T PRK06848 26 WHHVGAALRTKTGRIYAAVHLEAYVGRITVCAEAIAIGKAISEGD-HEIDTIVAVRHP 82 (139)
T ss_pred CCcEEEEEEeCCCCEEEEEEeecCCCCcccCHHHHHHHHHHHcCC-CceEEEEEEecC
Confidence 3579999999777665544432 333456899999999986521 234456666654
No 17
>PRK05578 cytidine deaminase; Validated
Probab=52.62 E-value=44 Score=26.92 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=36.0
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
.||+|+...++.+-...... .+.--..||..||..|+..- ......++|.+|.
T Consensus 25 ~Vgaa~~~~~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G-~~~i~~i~vv~~~ 79 (131)
T PRK05578 25 PVGAALLTDDGRIYTGCNIENASYGLTNCAERTAIFKAISEG-GGRLVAIACVGET 79 (131)
T ss_pred ceEEEEEeCCCCEEEEEEeeCccccCCcCHHHHHHHHHHHcC-CCceEEEEEEecC
Confidence 69999998777665544433 22235689999999998542 2245677888876
No 18
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=51.46 E-value=76 Score=24.10 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=34.9
Q ss_pred CceeEEEEEeeCCeEE-EEE--cCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 109 SSVGCAFVIPQLHIVK-KQT--LNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 109 ~~vG~Avi~~~~~~~~-~~k--L~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
..+|+.++.++.++.. .+. ........-||..||..|.+..........++++.-
T Consensus 17 ~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~ 74 (109)
T cd01285 17 VPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTL 74 (109)
T ss_pred CcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeC
Confidence 3688877765444422 221 223456788999999999887544445677777653
No 19
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=43.82 E-value=74 Score=25.20 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=35.7
Q ss_pred ceeEEEEEeeCCeEEEEEc--CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL--~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
.||++++..++++...... ..+..-..||..||..|...-. .....+++.+|.
T Consensus 22 ~vgAa~~~~~G~i~~G~n~e~~~~~~s~~AE~~Ai~~a~~~g~-~~i~~i~vv~~~ 76 (127)
T TIGR01354 22 KVGAALLTKDGRIFTGVNVENASYPLTICAERSAIGKAISAGY-RKFVAIAVADSA 76 (127)
T ss_pred eEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCC-CCeEEEEEEeCC
Confidence 5888888766665444433 2334456899999999987632 245678888776
No 20
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=42.68 E-value=86 Score=25.74 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=32.6
Q ss_pred ceeEEEEEeeCCeEEEE---EcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 110 SVGCAFVIPQLHIVKKQ---TLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~---kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
.+|+.+|.+++++.... ...+.--.--||..||..|-+..........++++
T Consensus 29 PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyv 83 (152)
T COG0590 29 PVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYV 83 (152)
T ss_pred CEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEE
Confidence 57777776455444322 22333335589999999999998665555555554
No 21
>KOG1812|consensus
Probab=39.90 E-value=47 Score=31.49 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCCCCCch--HHHHHHHHHHhccccCceEEEEEEecC
Q psy15595 132 SSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNP--LVQSIHEEISTGDLKNVSLNLHEVERN 205 (221)
Q Consensus 132 ~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~~~~~~--ii~~I~~~i~~l~~~gi~V~l~WV~r~ 205 (221)
.+...||++|+..+|..+.+.+...+.+++|+.--.+.+.....+.. .+..+.+....++.+.....-+-|+++
T Consensus 47 ~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~~~~~~~~~~~~l~~~v~~~r~~l~~~~~i~~~~~ 122 (384)
T KOG1812|consen 47 ITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGREKPEQHRKIVLLVELVQRIREQLTSSEPILVPKN 122 (384)
T ss_pred cchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhcccceecccc
Confidence 67889999999999999999999999999995444443332222221 333344444444444444344555555
No 22
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=38.17 E-value=2e+02 Score=22.81 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=46.9
Q ss_pred hhhccCCceEEEecCCCCC--CceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe------
Q psy15595 90 MNENYGDFVQVYTDGSKSD--SSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS------ 161 (221)
Q Consensus 90 i~~~~~~~~~IYTDGSK~~--~~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S------ 161 (221)
|...++|.+.--||-...+ ..+..| ...|+-....|.|.|++.|-..|-.. .+.+.+.+.|.-
T Consensus 7 I~as~NNTiitvTD~~G~~~~~~~S~G--------~~g~kg~kk~TpyAAq~aa~~~~~~~-~~~Gi~~v~v~ikG~gg~ 77 (114)
T TIGR03628 7 IYSSFNNTIITITDITGAETIARSSGG--------MVVKADRDESSPYAAMQAAGRAAEKA-KERGITGLHIKVRAPGGN 77 (114)
T ss_pred EEccCCCeEEEEEcCCCCEEEEEecCc--------ceEeCCCccCCHHHHHHHHHHHHHHH-HHcCCcEEEEEEEecCCC
Confidence 3445667777788876643 111111 12345567888999998877544444 466777665554
Q ss_pred -------CcHHHHHHHhCCC
Q psy15595 162 -------DSLSALQAISSMS 174 (221)
Q Consensus 162 -------DS~SaL~aI~n~~ 174 (221)
-.++||++|+...
T Consensus 78 ~~~~~G~Gr~~air~l~~~g 97 (114)
T TIGR03628 78 GQKSPGPGAQAAIRALARAG 97 (114)
T ss_pred CCCCCCCcHHHHHHHHHHCC
Confidence 4488888887543
No 23
>PRK12411 cytidine deaminase; Provisional
Probab=35.27 E-value=1.2e+02 Score=24.34 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=34.5
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
+||+|+...++.+-...... .+.---.||..||..|+..- ......+.|.+|.
T Consensus 25 ~VgAa~~t~~G~i~~G~nvEn~s~~~s~CAE~~Ai~~av~~g-~~~i~~i~v~~~~ 79 (132)
T PRK12411 25 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADT 79 (132)
T ss_pred ceEEEEEeCCCCEEEEEEeecCCCCcCcCHHHHHHHHHHHCC-CCceEEEEEEeCC
Confidence 58999888666665444332 23224589999999997542 2245677787765
No 24
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=35.17 E-value=91 Score=22.76 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=29.5
Q ss_pred CceeEEEEEeeCCeEE-EEE--cCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 109 SSVGCAFVIPQLHIVK-KQT--LNPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 109 ~~vG~Avi~~~~~~~~-~~k--L~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
..+|+.++.++.+... .+. .......--||..||..|-+. ........++++
T Consensus 24 ~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~~~~~~~~lyv 78 (102)
T PF00383_consen 24 FPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GGSSLKGCTLYV 78 (102)
T ss_dssp SSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TSSGETTEEEEE
T ss_pred CCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-ccccccCccccc
Confidence 3688887775333322 221 122334568999999998887 322334566665
No 25
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=32.47 E-value=1.9e+02 Score=22.63 Aligned_cols=46 Identities=28% Similarity=0.234 Sum_probs=27.7
Q ss_pred ceeEEEEEeeCCeEE-EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 110 SVGCAFVIPQLHIVK-KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~-~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
.+|+.++..+.++.. .+.- .....-||..||.+|.+. .....++++
T Consensus 20 pvGaviv~~~g~iv~~g~n~--~~~~~HAE~~ai~~a~~~----~l~g~tly~ 66 (115)
T cd01284 20 PVGCVIVDDDGEIVGEGYHR--KAGGPHAEVNALASAGEK----LARGATLYV 66 (115)
T ss_pred CEEEEEEeCCCeEEEEecCC--CCCcccHHHHHHHHHhhc----CCCCeEEEE
Confidence 588877764444332 2221 225678999999998874 334455554
No 26
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=30.90 E-value=1.6e+02 Score=23.31 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 132 SSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 132 ~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
....-||..||..|-+- .......++++
T Consensus 66 ~~~~HAE~~Ai~~a~~~--~~~~~~~tLyv 93 (131)
T cd01286 66 CRTVHAEQNAILQAARH--GVSLEGATLYV 93 (131)
T ss_pred CCCCCHHHHHHHHHhHc--CCCcCCeEEEE
Confidence 45678999999998763 22234455554
No 27
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=24.81 E-value=1.7e+02 Score=24.52 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=22.6
Q ss_pred CceeEEEEEeeCCeEE-EEE--cCCCCchhHHHHHHHHHHHHHh
Q psy15595 109 SSVGCAFVIPQLHIVK-KQT--LNPKSSIFHAELLAISDAVSTI 149 (221)
Q Consensus 109 ~~vG~Avi~~~~~~~~-~~k--L~~~~SIftAEl~AI~~AL~~~ 149 (221)
..+|+.+|. +.++.. .+. ....-..--||..||..|.+..
T Consensus 33 ~pvGAVIV~-~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~ 75 (172)
T PRK10860 33 VPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 75 (172)
T ss_pred CCEEEEEEe-CCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhc
Confidence 368876554 333322 222 1222234579999999987644
No 28
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=24.81 E-value=2.9e+02 Score=20.76 Aligned_cols=48 Identities=27% Similarity=0.216 Sum_probs=29.4
Q ss_pred EecCCCCCCceeEEEEEeeCCeEEEEEc--CCCCchhHHHHHHHHHHHHHhh
Q psy15595 101 YTDGSKSDSSVGCAFVIPQLHIVKKQTL--NPKSSIFHAELLAISDAVSTIK 150 (221)
Q Consensus 101 YTDGSK~~~~vG~Avi~~~~~~~~~~kL--~~~~SIftAEl~AI~~AL~~~~ 150 (221)
|...| +-.||++++..++++...+.. .....-.-||..||..|+..-.
T Consensus 12 ~~~~~--~~~vga~i~~~~g~i~~G~n~e~~~~~~~~hAE~~ai~~~~~~~~ 61 (112)
T cd01283 12 YAPYS--NFTVGAALLTKDGRIFTGVNVENASYGLTLCAERTAIGKAVSEGL 61 (112)
T ss_pred cCCCC--CCeEEEEEEECCCCEEEeEEeecCCCCCCcCHHHHHHHHHHHcCC
Confidence 44444 235888877655555433322 2334566899999999886543
No 29
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=24.28 E-value=59 Score=28.92 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCcEEE-E----eCcHHHHHHHhCCC
Q psy15595 134 IFHAELLAISDAVSTIKSQSIGEAVI-I----SDSLSALQAISSMS 174 (221)
Q Consensus 134 IftAEl~AI~~AL~~~~~~~~~~i~I-~----SDS~SaL~aI~n~~ 174 (221)
.-++|.+|++.+|+.+...+..+.+| + .||++...-..+-.
T Consensus 108 n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~ds~a~~k~~k~~~ 153 (225)
T COG3341 108 NDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGNDSWAYFKYVKDKC 153 (225)
T ss_pred CchHHHHHHhccccccccccCccceeeccCCcchhHHHHHHHhhhh
Confidence 45799999999999998877776655 7 79999998887543
No 30
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.12 E-value=40 Score=26.16 Aligned_cols=14 Identities=14% Similarity=0.477 Sum_probs=10.6
Q ss_pred CCCCccccCCCchh
Q psy15595 6 TNPNFKRINNPPYK 19 (221)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (221)
.+|.+||.|||-|.
T Consensus 45 i~p~YePWF~Pl~E 58 (97)
T COG1930 45 IKPGYEPWFQPLWE 58 (97)
T ss_pred hCCCCCcccccccC
Confidence 46888888888763
No 31
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=20.54 E-value=2.7e+02 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=20.9
Q ss_pred CcEEEEeCcHHHHHHHhCCCCCchHHHHHHHHHHhccccCceEEEEEEe
Q psy15595 155 GEAVIISDSLSALQAISSMSHSNPLVQSIHEEISTGDLKNVSLNLHEVE 203 (221)
Q Consensus 155 ~~i~I~SDS~SaL~aI~n~~~~~~ii~~I~~~i~~l~~~gi~V~l~WV~ 203 (221)
+-++++||-.+. ...+ ....+..|+..|+.|...-|-
T Consensus 151 KVVILLTDG~sn--------s~~d----vleaAq~LR~~GVeI~vIGVG 187 (576)
T PTZ00441 151 QLVILMTDGIPN--------SKYR----ALEESRKLKDRNVKLAVIGIG 187 (576)
T ss_pred eEEEEEecCCCC--------Cccc----HHHHHHHHHHCCCEEEEEEeC
Confidence 467888998741 1111 222334566677777766663
No 32
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=20.39 E-value=1.8e+02 Score=23.51 Aligned_cols=53 Identities=25% Similarity=0.250 Sum_probs=37.0
Q ss_pred eeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhc------CCCcEEEEeCcHHHHHHH
Q psy15595 111 VGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQ------SIGEAVIISDSLSALQAI 170 (221)
Q Consensus 111 vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~------~~~~i~I~SDS~SaL~aI 170 (221)
.|+.+++. .|+|.+++ -|.+.+.-+..|++++.+. +.+++.+.-||--+-.++
T Consensus 28 ~g~~v~~~------~Yrl~p~~-~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~ 86 (211)
T PF07859_consen 28 RGFVVVSI------DYRLAPEA-PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLAL 86 (211)
T ss_dssp HTSEEEEE------E---TTTS-STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHH
T ss_pred ccEEEEEe------eccccccc-cccccccccccceeeeccccccccccccceEEeecccccchhh
Confidence 35555553 36777776 5778899999999998774 357999999997665554
No 33
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=20.15 E-value=4.9e+02 Score=21.60 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCCCC-----C-chHHHHHHHHHHhccccCceEEE-EEEec
Q psy15595 137 AELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSH-----S-NPLVQSIHEEISTGDLKNVSLNL-HEVER 204 (221)
Q Consensus 137 AEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~~~-----~-~~ii~~I~~~i~~l~~~gi~V~l-~WV~r 204 (221)
.|+.+++..++-......+--+|.=||.+++-...-... . ..+...+..+...++..++.|-+ .++..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~ 171 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA 171 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence 467777777665554433444678899999865432111 1 12233333444455678887666 44443
No 34
>CHL00041 rps11 ribosomal protein S11
Probab=20.02 E-value=4.4e+02 Score=20.69 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=43.4
Q ss_pred HhhhccCCceEEEecCCCCCCceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe-----Cc
Q psy15595 89 NMNENYGDFVQVYTDGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS-----DS 163 (221)
Q Consensus 89 ~i~~~~~~~~~IYTDGSK~~~~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S-----DS 163 (221)
++...+++...-.||-.... .+... -. ...|+-....|.|.|++.|-..+.+ +.+.+.+.+.|.- -.
T Consensus 17 hI~~t~NNTiiTlTd~~G~~----l~~~S--~G-~~gfKg~rK~T~~Aa~~~a~~~~~~-~~~~gi~~v~I~ikG~G~Gr 88 (116)
T CHL00041 17 HIQASFNNTIVTVTDVRGRV----ISWSS--AG-ACGFKGARKGTPFAAQTAAENAIRT-VIDQGMKRAEVMIKGPGLGR 88 (116)
T ss_pred EEEcccCCEEEEEEcCCCCE----EEEEe--cC-ceeeCCCccCCHHHHHHHHHHHHHH-HHHcCCcEEEEEEECCCCcH
Confidence 34445677777788876421 11111 11 1235555678899999999755544 4456777776653 45
Q ss_pred HHHHHHHh
Q psy15595 164 LSALQAIS 171 (221)
Q Consensus 164 ~SaL~aI~ 171 (221)
++||++|+
T Consensus 89 ~~~ir~l~ 96 (116)
T CHL00041 89 DTALRAIR 96 (116)
T ss_pred HHHHHHHH
Confidence 56666664
Done!