Query psy15595
Match_columns 221
No_of_seqs 140 out of 228
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:37:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.7 7.1E-16 2.4E-20 120.6 12.4 107 97-204 3-117 (141)
2 2qkb_A Ribonuclease H1, HS-RNA 99.7 6.1E-16 2.1E-20 124.6 11.2 107 95-206 5-133 (154)
3 3u3g_D Ribonuclease H, RNAse H 99.6 1.6E-15 5.5E-20 117.8 10.0 112 96-211 2-125 (140)
4 3h08_A RNH (ribonuclease H); R 99.6 2.6E-14 8.8E-19 113.8 11.3 100 96-203 3-123 (146)
5 2kq2_A Ribonuclease H-related 99.5 7.8E-15 2.7E-19 118.0 5.2 106 96-205 5-118 (147)
6 2e4l_A Ribonuclease HI, RNAse 99.5 9.9E-14 3.4E-18 112.6 10.6 101 96-204 5-125 (158)
7 3p1g_A Xenotropic murine leuke 99.5 1.4E-13 4.8E-18 113.4 11.6 109 97-212 23-145 (165)
8 2ehg_A Ribonuclease HI; RNAse 99.5 8.9E-14 3E-18 110.7 9.9 102 98-204 2-118 (149)
9 1jl1_A Ribonuclease HI; RNAse 99.5 1.1E-13 3.7E-18 111.9 10.1 101 96-204 3-123 (155)
10 3qio_A GAG-POL polyprotein; RN 99.4 5.8E-13 2E-17 107.8 10.7 102 95-206 10-129 (150)
11 1ril_A Ribonuclease H; hydrola 99.4 2.6E-13 8.9E-18 111.2 6.1 101 96-204 7-128 (166)
12 2lsn_A Reverse transcriptase; 99.3 2.2E-11 7.4E-16 100.5 11.1 102 97-203 7-136 (165)
13 2zd1_A Reverse transcriptase/r 99.2 3.7E-11 1.3E-15 114.5 11.4 101 95-205 437-541 (557)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.2 7.9E-11 2.7E-15 112.2 11.8 101 95-205 434-538 (555)
15 1zbf_A Ribonuclease H-related 99.1 6.7E-11 2.3E-15 95.4 7.2 100 96-196 10-121 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 1.4E-10 4.8E-15 93.2 6.4 98 96-195 4-114 (134)
17 1rw3_A POL polyprotein; RNA an 83.9 0.14 4.9E-06 46.9 -1.1 75 95-173 344-428 (455)
18 2z3g_A Blasticidin-S deaminase 79.9 2.7 9.3E-05 32.6 5.1 54 109-163 27-80 (130)
19 2fr5_A Cytidine deaminase; tet 73.8 6.2 0.00021 31.3 5.7 54 109-163 36-91 (146)
20 1uwz_A Cytidine deaminase; CDD 68.3 11 0.00038 29.2 6.0 53 110-163 25-79 (136)
21 2d30_A Cytidine deaminase; pur 66.8 7.9 0.00027 30.5 4.9 54 110-164 34-89 (141)
22 2zd1_B P51 RT; P51/P66, hetero 66.0 14 0.00047 33.7 7.0 71 95-167 322-400 (428)
23 3oj6_A Blasticidin-S deaminase 61.2 9 0.00031 30.9 4.3 52 110-162 52-103 (158)
24 3mpz_A Cytidine deaminase; ssg 60.3 13 0.00043 29.8 5.0 53 110-163 47-101 (150)
25 1r5t_A Cytidine deaminase; zin 59.5 19 0.00065 28.1 5.9 80 109-198 32-114 (142)
26 3dmo_A Cytidine deaminase; str 56.4 15 0.00051 28.9 4.7 54 110-163 33-89 (138)
27 3r2n_A Cytidine deaminase; str 50.8 23 0.00079 27.7 5.0 53 110-163 32-86 (138)
28 3b8f_A Putative blasticidin S 46.4 17 0.00058 28.4 3.6 53 110-163 24-78 (142)
29 1ctt_A Cytidine deaminase; hyd 38.3 40 0.0014 29.6 5.0 62 101-164 203-267 (294)
30 2nx8_A TRNA-specific adenosine 28.0 1.2E+02 0.004 24.4 5.9 53 108-161 35-90 (179)
31 2b3j_A TRNA adenosine deaminas 26.8 1.8E+02 0.006 22.7 6.6 53 108-161 26-81 (159)
32 2a8n_A Cytidine and deoxycytid 26.4 1.1E+02 0.0038 23.3 5.3 53 108-161 23-78 (144)
33 3j20_M 30S ribosomal protein S 26.0 68 0.0023 25.1 4.0 77 89-172 18-107 (137)
34 1wkq_A Guanine deaminase; doma 25.8 1.4E+02 0.0048 23.6 6.0 54 108-162 31-87 (164)
35 1wwr_A TRNA adenosine deaminas 25.4 1.4E+02 0.0048 23.8 5.9 63 108-171 42-110 (171)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.67 E-value=7.1e-16 Score=120.62 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=80.9
Q ss_pred ceEEEecCCCCCC--ceeEEEEEeeCC---eE-E-EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHH
Q psy15595 97 FVQVYTDGSKSDS--SVGCAFVIPQLH---IV-K-KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQA 169 (221)
Q Consensus 97 ~~~IYTDGSK~~~--~vG~Avi~~~~~---~~-~-~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~a 169 (221)
.+.||||||+..+ ..|+|+++.+.+ .. . ...+ ..+|.+.||+.|++.||+++.+.+..++.|+|||+.+++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5789999998865 588888885542 22 2 2233 4788999999999999999999888999999999999999
Q ss_pred HhCC-CCCchHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 170 ISSM-SHSNPLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 170 I~n~-~~~~~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
+... ...+.....+...+..+..+...|.|+||+|
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~ 117 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR 117 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 9963 3444433333334444555567899999997
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.65 E-value=6.1e-16 Score=124.60 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=82.7
Q ss_pred CCceEEEecCCCCCCc-----eeEEEEEeeCCe-EEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHH
Q psy15595 95 GDFVQVYTDGSKSDSS-----VGCAFVIPQLHI-VKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQ 168 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~~-----vG~Avi~~~~~~-~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~ 168 (221)
.+.+.||||||+..++ +|+|+++.+.+. .....++..+|.+.||++|+++||+.+...+..+++|+|||+++++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 3578999999998653 799998854322 2445676678999999999999999998888899999999999999
Q ss_pred HHhCC---------C-------CCchHHHHHHHHHHhccccCceEEEEEEecCc
Q psy15595 169 AISSM---------S-------HSNPLVQSIHEEISTGDLKNVSLNLHEVERNR 206 (221)
Q Consensus 169 aI~n~---------~-------~~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~~ 206 (221)
.|..+ . ...++.+.|..++. +..|.|+||+|-.
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-----~~~v~~~~V~~H~ 133 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-----GMDIQWMHVPGHS 133 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-----TCEEEEEECCTTS
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-----CCceEEEEccCCC
Confidence 99862 1 11356666665544 3569999999843
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.62 E-value=1.6e-15 Score=117.83 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=79.3
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeC--CeE-E-EEEcCCCCchhHHHHHHHHHHHHHhhhcCCC----cEEEEeCcHH
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQL--HIV-K-KQTLNPKSSIFHAELLAISDAVSTIKSQSIG----EAVIISDSLS 165 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~--~~~-~-~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~----~i~I~SDS~S 165 (221)
..+.||||||+..+ ..|+|+++.+. +.. . ...+ ..+|.+.||+.|++.||+++.+.+.. ++.|+|||+.
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35799999999865 58888888553 222 2 2233 35789999999999999999887777 9999999999
Q ss_pred HHHHHhCCC-CCc-hHHHHHHHHHHhccccCceEEEEEEecCcchhhh
Q psy15595 166 ALQAISSMS-HSN-PLVQSIHEEISTGDLKNVSLNLHEVERNRIICHI 211 (221)
Q Consensus 166 aL~aI~n~~-~~~-~ii~~I~~~i~~l~~~gi~V~l~WV~r~~~~~~~ 211 (221)
+++.+.... ..+ ++...+..+......+...|.|+||+| .+|+
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~---~~N~ 125 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR---EKNA 125 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG---GGGH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc---hhhH
Confidence 999999643 233 344333333332022334689999997 4554
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.56 E-value=2.6e-14 Score=113.80 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=77.7
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeEE--EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIVK--KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~--~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~ 171 (221)
+.+.||||||+..+ ..|+|+++.+.+... +..+ ..+|...||++|++.||+.+.+ ..+++|+|||+++++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 56899999998875 488898886655332 2233 4678999999999999999875 579999999999999998
Q ss_pred C-C----------------CCCchHHHHHHHHHHhccccCceEEEEEEe
Q psy15595 172 S-M----------------SHSNPLVQSIHEEISTGDLKNVSLNLHEVE 203 (221)
Q Consensus 172 n-~----------------~~~~~ii~~I~~~i~~l~~~gi~V~l~WV~ 203 (221)
. + -...++.+.|..++.. ..|.|+||+
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-----~~v~~~~V~ 123 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-----HRVTFHKVK 123 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-----SEEEEEECC
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-----CceEEEEcC
Confidence 7 2 1124677777777664 359999998
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.52 E-value=7.8e-15 Score=118.00 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=81.1
Q ss_pred CceEEEecCCCCCCceeEEEEEeeCCeEE--EE-Ec--CC--CCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHH
Q psy15595 96 DFVQVYTDGSKSDSSVGCAFVIPQLHIVK--KQ-TL--NP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQ 168 (221)
Q Consensus 96 ~~~~IYTDGSK~~~~vG~Avi~~~~~~~~--~~-kL--~~--~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~ 168 (221)
+.+.||||||+..+.+|+|+++.+.+... .. .+ +. .+|++.||++|++.||+++.+.+. ++.|+|||+...+
T Consensus 5 ~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~ 83 (147)
T 2kq2_A 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAF 83 (147)
T ss_dssp SCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHH
T ss_pred CeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHH
Confidence 56899999999997799999886554332 22 22 22 358999999999999999887777 9999999998888
Q ss_pred HHhC-CCCCchHHHHHHHHHHhccccCceEEEEEEecC
Q psy15595 169 AISS-MSHSNPLVQSIHEEISTGDLKNVSLNLHEVERN 205 (221)
Q Consensus 169 aI~n-~~~~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~ 205 (221)
.+.+ +..........++++..+.. .|.|+||++-
T Consensus 84 w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH 118 (147)
T 2kq2_A 84 WATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAH 118 (147)
T ss_dssp HTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCC
T ss_pred HHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCc
Confidence 7774 33445566667777777655 6899999964
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.50 E-value=9.9e-14 Score=112.61 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=75.5
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeEE--EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIVK--KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~--~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~ 171 (221)
..+.||||||+..+ ..|+|+++.+.+... ...+ ..+|...||+.|++.||+.+... .++.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHH
Confidence 45899999999864 478888886554322 2233 35789999999999999998643 89999999999999998
Q ss_pred C---------CC-------CCchHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 172 S---------MS-------HSNPLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 172 n---------~~-------~~~~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
. +. ...++.+.|..++.. ..|.|+||+.
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-----~~v~~~wV~g 125 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-----HQIDWRWVKG 125 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-----SEEEEEECCT
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHcc-----CcEEEEEccC
Confidence 7 11 123666666665542 4799999984
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.50 E-value=1.4e-13 Score=113.44 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=77.7
Q ss_pred ceEEEecCCCCC--CceeEEEEEeeCCeE-EEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCC
Q psy15595 97 FVQVYTDGSKSD--SSVGCAFVIPQLHIV-KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM 173 (221)
Q Consensus 97 ~~~IYTDGSK~~--~~vG~Avi~~~~~~~-~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~ 173 (221)
.+.||||||+.. +..|+|+++...+.. ....++..+|++.||++|+..||+++ ...++.|+|||+++++.|-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 489999999984 346777655334332 23356778899999999999999999 368999999999999999421
Q ss_pred CC-----CchHHHHHHHHHHhccccCceEEEEEEecCc------chhhhc
Q psy15595 174 SH-----SNPLVQSIHEEISTGDLKNVSLNLHEVERNR------IICHIF 212 (221)
Q Consensus 174 ~~-----~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~~------~~~~~~ 212 (221)
.. ..++.+.+ +..+. ++..|.|+||++-. ..||+.
T Consensus 100 ~~g~~v~n~dl~~~l---~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~ 145 (165)
T 3p1g_A 100 SEGREIKNKNEILAL---LKALF-LPKRLSIIHCPGHQKGNSAEARGNRM 145 (165)
T ss_dssp CCSCCCSSHHHHHHH---HHHTT-SBSEEEEEECCSSCCSCSHHHHHHHH
T ss_pred cCCCcccCHHHHHHH---HHHHh-cCCceEEEEecCCCCCCcCcchHHHH
Confidence 11 12444444 33333 46789999999876 566653
No 8
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.50 E-value=8.9e-14 Score=110.67 Aligned_cols=102 Identities=20% Similarity=0.125 Sum_probs=76.5
Q ss_pred eEEEecCCCC-C--CceeE-EEEEeeCCeE-EEE--EcC---CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHH
Q psy15595 98 VQVYTDGSKS-D--SSVGC-AFVIPQLHIV-KKQ--TLN---PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSAL 167 (221)
Q Consensus 98 ~~IYTDGSK~-~--~~vG~-Avi~~~~~~~-~~~--kL~---~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL 167 (221)
+.||||||.. . +++|+ |+++.+.+.. ..+ .+. ..+|.+.||+.|++.||+.+...+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999987 3 35775 8777543332 222 223 37889999999999999999988889999999999999
Q ss_pred HHHhCCCC-C----chHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 168 QAISSMSH-S----NPLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 168 ~aI~n~~~-~----~~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
+.+..+.. . .++.+.|..++... .|.|+||+|
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-----~v~~~~V~~ 118 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-----NATLIWVPR 118 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-----TCEEEECCG
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-----CEEEEEcCC
Confidence 99987522 2 24555555555543 389999999
No 9
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.49 E-value=1.1e-13 Score=111.90 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=75.0
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeEE--EEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIVK--KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~--~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~ 171 (221)
..+.||||||+..+ ..|+|+++.+.+... ...+ ..+|.+.||+.|+..||+.+.+. .++.|+|||+++++.|.
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHH
Confidence 35789999999865 478888886544322 2233 46789999999999999998753 79999999999999998
Q ss_pred CC---------CC-------CchHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 172 SM---------SH-------SNPLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 172 n~---------~~-------~~~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
.+ .. ..++.+.|..++. ...|.|+||+.
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-----~~~v~~~wV~g 123 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-----QHQIKWEWVKG 123 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-----TCEEEEEECCS
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHc-----cCceEEEEcCC
Confidence 62 11 1356666655543 24799999983
No 10
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.44 E-value=5.8e-13 Score=107.79 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCceEEEecCCCCCC--ceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhC
Q psy15595 95 GDFVQVYTDGSKSDS--SVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 172 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n 172 (221)
.+.+.||||||+..+ ..|+|++..+... ....+ ..+|...||++|+..||+.+ ..+++|+|||+++++.|..
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 467899999998765 3778887744332 22334 57889999999999999985 4899999999999999976
Q ss_pred CC----------------CCchHHHHHHHHHHhccccCceEEEEEEecCc
Q psy15595 173 MS----------------HSNPLVQSIHEEISTGDLKNVSLNLHEVERNR 206 (221)
Q Consensus 173 ~~----------------~~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~~ 206 (221)
+. ...++.+.+.+.+. +...|.|+||++-.
T Consensus 84 w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~----~~~~v~~~wV~gH~ 129 (150)
T 3qio_A 84 WIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI----KKEKVYLAWVPAHK 129 (150)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHT----TCSEEEEEECCTTS
T ss_pred HHHHHhhcCcCcCcCcccccHHHHHHHHHHHh----hcCceEEEEccCcC
Confidence 41 12345555544332 45689999999854
No 11
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.40 E-value=2.6e-13 Score=111.20 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=74.4
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeEEEE--EcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIVKKQ--TLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~--kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~ 171 (221)
..+.||||||+..+ ..|+|+++.+.+....+ .+ ..+|.+.||++|++.||+.+... .++.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 35789999999865 47888888543322111 22 35789999999999999998654 58999999999999998
Q ss_pred C----------CCC-------CchHHHHHHHHHHhccccCceEEEEEEec
Q psy15595 172 S----------MSH-------SNPLVQSIHEEISTGDLKNVSLNLHEVER 204 (221)
Q Consensus 172 n----------~~~-------~~~ii~~I~~~i~~l~~~gi~V~l~WV~r 204 (221)
. +.. ..++.+.|..++.. ..|.|+||+.
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-----~~v~~~wV~g 128 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-----HRVRFHFVKG 128 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-----SEEECCCCCG
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-----CeEEEEEeeC
Confidence 7 221 23566667666542 4799999983
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.28 E-value=2.2e-11 Score=100.46 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred ceEEEecCCCCCC-c------eeEEEEEeeC----CeEEEEEcC-CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcH
Q psy15595 97 FVQVYTDGSKSDS-S------VGCAFVIPQL----HIVKKQTLN-PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSL 164 (221)
Q Consensus 97 ~~~IYTDGSK~~~-~------vG~Avi~~~~----~~~~~~kL~-~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~ 164 (221)
.+.||||||+..+ + .|+|+++... .....+..+ ...+-..||+.|+..||+.+...+ .++.|+|||+
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~ 85 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSF 85 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCH
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChH
Confidence 4789999998865 2 7899987432 233444433 556678899999998888876644 5799999999
Q ss_pred HHHHHHhCC---------CC-------CchHHHHHHHHHHhccccCceEEEEEEe
Q psy15595 165 SALQAISSM---------SH-------SNPLVQSIHEEISTGDLKNVSLNLHEVE 203 (221)
Q Consensus 165 SaL~aI~n~---------~~-------~~~ii~~I~~~i~~l~~~gi~V~l~WV~ 203 (221)
++++.|..+ .. ..++.+.+.+++... ..|.|+||+
T Consensus 86 Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~----~~v~~~~Vk 136 (165)
T 2lsn_A 86 YVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMK----PDITIQHEK 136 (165)
T ss_dssp HHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHC----TTCEEEECC
T ss_pred HHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCC----CCEEEEEEe
Confidence 999999631 11 236666666655432 258999997
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.23 E-value=3.7e-11 Score=114.47 Aligned_cols=101 Identities=24% Similarity=0.190 Sum_probs=76.5
Q ss_pred CCceEEEecCCCCCC--ceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhC
Q psy15595 95 GDFVQVYTDGSKSDS--SVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 172 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n 172 (221)
.+.+.||||||+..+ ..|+|++....+ .....+ ..+|.+.||+.|++.||+.+ ..++.|+|||+.+++.|..
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~-~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGR-QKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSC-EEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCc-EEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 456899999998765 267777774333 222333 57889999999999999998 5799999999999999997
Q ss_pred CCCC--chHHHHHHHHHHhccccCceEEEEEEecC
Q psy15595 173 MSHS--NPLVQSIHEEISTGDLKNVSLNLHEVERN 205 (221)
Q Consensus 173 ~~~~--~~ii~~I~~~i~~l~~~gi~V~l~WV~r~ 205 (221)
+... .++.+.+.+.+.. ...|.|+||++.
T Consensus 511 ~~~~~~~~l~~~~~~~l~~----~~~v~~~wV~~H 541 (557)
T 2zd1_A 511 QPDKSESELVNQIIEQLIK----KEKVYLAWVPAH 541 (557)
T ss_dssp CCSEESSHHHHHHHHHHHH----CSEEEEEECCSS
T ss_pred CCccCCHHHHHHHHHHHhc----CCCEEEEEcCCC
Confidence 6543 5677666554433 237999999994
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.20 E-value=7.9e-11 Score=112.17 Aligned_cols=101 Identities=24% Similarity=0.212 Sum_probs=77.1
Q ss_pred CCceEEEecCCCCCCc--eeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhC
Q psy15595 95 GDFVQVYTDGSKSDSS--VGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 172 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~~--vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n 172 (221)
.+.+.||||||+..++ .|+|++....+.. ...+ ..+|...||+.|++.||+. +..++.|+|||+.+++.|..
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe-eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 4568999999988653 7888887544322 2333 4678999999999999998 56899999999999999997
Q ss_pred CCC--CchHHHHHHHHHHhccccCceEEEEEEecC
Q psy15595 173 MSH--SNPLVQSIHEEISTGDLKNVSLNLHEVERN 205 (221)
Q Consensus 173 ~~~--~~~ii~~I~~~i~~l~~~gi~V~l~WV~r~ 205 (221)
+.. ..++.+.+.+.+.. +..|.++||++.
T Consensus 508 ~~~~~~~~l~~~~~~~~~~----~~~v~~~wV~~H 538 (555)
T 1mu2_A 508 QPTESESKIVNQIIEEMIK----KEAIYVAWVPAH 538 (555)
T ss_dssp CCSEESCHHHHHHHHHHHH----CSEEEEEECCSS
T ss_pred ccccccHHHHHHHHHHhcc----CCcEEEEEEECC
Confidence 653 35676665555443 456999999984
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.14 E-value=6.7e-11 Score=95.44 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=74.5
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeEEEEEc-CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhC
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIVKKQTL-NPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 172 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~~~~kL-~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n 172 (221)
+.+.||||||+..+ ..|+|++....+....... ...+|...||++|++.||+.+.+.+. ++.|+|||+.++..+++
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~ 88 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKD 88 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHc
Confidence 56789999999865 4789988843222222211 12578999999999999999988766 99999999999999985
Q ss_pred CCC---------CchHHHHHHHHHHhccccCce
Q psy15595 173 MSH---------SNPLVQSIHEEISTGDLKNVS 196 (221)
Q Consensus 173 ~~~---------~~~ii~~I~~~i~~l~~~gi~ 196 (221)
... ..++-+.|......++....+
T Consensus 89 ~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~ 121 (142)
T 1zbf_A 89 KKAKSTLVRNEETALIWKLVDEAEEWLNTHTYE 121 (142)
T ss_dssp TCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCC
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHhhCCCc
Confidence 431 236777777777766666544
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.08 E-value=1.4e-10 Score=93.16 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=69.7
Q ss_pred CceEEEecCCCCCC--ceeEEEEEeeCCeE--EEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHh
Q psy15595 96 DFVQVYTDGSKSDS--SVGCAFVIPQLHIV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 171 (221)
Q Consensus 96 ~~~~IYTDGSK~~~--~vG~Avi~~~~~~~--~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~ 171 (221)
+...||||||+..+ ..|.|+|+...+.. ....+ ..+|...||++|+..||+.+.+.+.. +.|+|||+.+++.|.
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 44679999999876 37775555333222 22223 36889999999999999999886544 899999999999998
Q ss_pred CCCC---------CchHHHHHHHHHHhccccCc
Q psy15595 172 SMSH---------SNPLVQSIHEEISTGDLKNV 195 (221)
Q Consensus 172 n~~~---------~~~ii~~I~~~i~~l~~~gi 195 (221)
+... ..++-+.+..+...|+....
T Consensus 82 ~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~ 114 (134)
T 4htu_A 82 DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTY 114 (134)
T ss_dssp HTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCCC
T ss_pred cCCcccCCCCCccCHHHHHHHHHHHHHHHhCCC
Confidence 5322 23777777766665555543
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=83.94 E-value=0.14 Score=46.93 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=47.4
Q ss_pred CCceEEEecCCCCCCceeEEEEEeeCC---eEEEE---EcC---CCCchhHHHHHHHHHHHHHhhh-cCCCcEEEEeCcH
Q psy15595 95 GDFVQVYTDGSKSDSSVGCAFVIPQLH---IVKKQ---TLN---PKSSIFHAELLAISDAVSTIKS-QSIGEAVIISDSL 164 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~~vG~Avi~~~~~---~~~~~---kL~---~~~SIftAEl~AI~~AL~~~~~-~~~~~i~I~SDS~ 164 (221)
.....+|||||.. ++| |++....+ ....| ++. ...|++..|++||..|++.... .....++|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3446899999843 344 34432110 11111 222 3467899999999999988755 3457999999996
Q ss_pred HHHHHHhCC
Q psy15595 165 SALQAISSM 173 (221)
Q Consensus 165 SaL~aI~n~ 173 (221)
++..+.+.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 66555544
No 18
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=79.90 E-value=2.7 Score=32.58 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=38.2
Q ss_pred CceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 109 SSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 109 ~~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
-.||+|++..++.+........+..-..||..||..|+.. -......+++.+|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 4799999987766654444444555678999999999874 22345677888874
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=73.78 E-value=6.2 Score=31.30 Aligned_cols=54 Identities=24% Similarity=0.150 Sum_probs=37.6
Q ss_pred CceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 109 SSVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 109 ~~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
-.||+|++..++.+....... .+..-..||..||..|+.. -......++|.+|.
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 379999998666665444433 2333568999999999975 33445678888874
No 20
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=68.29 E-value=11 Score=29.22 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=37.5
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
.||+|++..++.+....... .+.....||..||..|... -......+++.+|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 79999988666665444333 3334678999999999976 33455788888874
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=66.76 E-value=7.9 Score=30.52 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=37.6
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcH
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSL 164 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~ 164 (221)
.||+|++..++.+-...... .+..-..||..||..|+.- -......+.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCC
Confidence 79999998776665444443 3334578999999999864 223456788888863
No 22
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=65.98 E-value=14 Score=33.66 Aligned_cols=71 Identities=6% Similarity=-0.127 Sum_probs=41.0
Q ss_pred CCceEEEecCCCCCCceeEEEEEeeCCe---EEEEEcCCCCchhHHHHHH-HHHHHHHhhh----cCCCcEEEEeCcHHH
Q psy15595 95 GDFVQVYTDGSKSDSSVGCAFVIPQLHI---VKKQTLNPKSSIFHAELLA-ISDAVSTIKS----QSIGEAVIISDSLSA 166 (221)
Q Consensus 95 ~~~~~IYTDGSK~~~~vG~Avi~~~~~~---~~~~kL~~~~SIftAEl~A-I~~AL~~~~~----~~~~~i~I~SDS~Sa 166 (221)
.....++||||.. ++..|++..+... +..+.-....+...-|++| |..||+--.. .....++++||.+.-
T Consensus 322 ~~~~~l~~das~~--g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~ 399 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE 399 (428)
T ss_dssp TSCCEEEEEEEET--TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHH
T ss_pred CCCEEEEEecCCC--CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHH
Confidence 3456999999953 2322333322111 2233333444466677888 9999987433 234567888999764
Q ss_pred H
Q psy15595 167 L 167 (221)
Q Consensus 167 L 167 (221)
.
T Consensus 400 ~ 400 (428)
T 2zd1_B 400 T 400 (428)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=61.20 E-value=9 Score=30.92 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=35.3
Q ss_pred ceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeC
Q psy15595 110 SVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD 162 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SD 162 (221)
+||+|+...++.+........+..-..||..||..|+.-- ......+++.+|
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs~G-~~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAAAG-ATKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTT-CCCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHHhC-CCceEEEEEEeC
Confidence 7999999977776655555455555689999999998521 112334556665
No 24
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=60.32 E-value=13 Score=29.82 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=36.4
Q ss_pred ceeEEEEEeeCCeEEEEEcCC--CCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLNP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~~--~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
+||+|+...++++-......+ +..-..||..||..|+..- ......++|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 799999997777655554432 3345689999999998742 2344567777763
No 25
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=59.52 E-value=19 Score=28.14 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=48.4
Q ss_pred CceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCcHHHHHHHhCCC-CCchHHHHHHH
Q psy15595 109 SSVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMS-HSNPLVQSIHE 185 (221)
Q Consensus 109 ~~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS~SaL~aI~n~~-~~~~ii~~I~~ 185 (221)
-.||+|++..++.+-...... .+..-..||..||..|+..-.......++|.+|... +- .+.. ..+.
T Consensus 32 f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~~-------~~~~PCG---~CRq 101 (142)
T 1r5t_A 32 FRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSED-------QCVSPCG---VCRQ 101 (142)
T ss_dssp CCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCSS-------SCCCCCH---HHHH
T ss_pred CCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCCC-------cccCHHH---HHHH
Confidence 379999988666655444433 333457899999999987532222678899987532 12 2322 3455
Q ss_pred HHHhccccCceEE
Q psy15595 186 EISTGDLKNVSLN 198 (221)
Q Consensus 186 ~i~~l~~~gi~V~ 198 (221)
.+.++....+.|.
T Consensus 102 ~l~e~~~~~~~v~ 114 (142)
T 1r5t_A 102 FINEFVVKDFPIV 114 (142)
T ss_dssp HHHTTSCTTCEEE
T ss_pred HHHHhCCCCEEEE
Confidence 5666654454443
No 26
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=56.35 E-value=15 Score=28.92 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=36.8
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhh-cCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKS-QSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~-~~~~~i~I~SDS 163 (221)
+||+|+...|+++-...... .+..-..||..||..|+.--.. .....+.|.+|.
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGET 89 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESC
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCC
Confidence 69999999777765555443 2333468999999999864211 134577888886
No 27
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=50.77 E-value=23 Score=27.74 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=35.0
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
.||+|++..++.+....... .+..-..||..||..|+..- ......+.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 79999998777665544433 22235679999999997652 2234556777663
No 28
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=46.41 E-value=17 Score=28.39 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=33.7
Q ss_pred ceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeCc
Q psy15595 110 SVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163 (221)
Q Consensus 110 ~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SDS 163 (221)
.||+|++..++.+-...... .+.....||..||..|...= ......+++.+|.
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLAREN 78 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEESS
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEecC
Confidence 89999998666654433332 33346789999999998741 1122445666653
No 29
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=38.26 E-value=40 Score=29.60 Aligned_cols=62 Identities=15% Similarity=-0.066 Sum_probs=41.3
Q ss_pred EecCCCCCCceeEEEEEeeCCeEEEEEcC--CCCchhHHHHHHHHHHHHHhh-hcCCCcEEEEeCcH
Q psy15595 101 YTDGSKSDSSVGCAFVIPQLHIVKKQTLN--PKSSIFHAELLAISDAVSTIK-SQSIGEAVIISDSL 164 (221)
Q Consensus 101 YTDGSK~~~~vG~Avi~~~~~~~~~~kL~--~~~SIftAEl~AI~~AL~~~~-~~~~~~i~I~SDS~ 164 (221)
|...| ..+||+|+...++.+-...... .+..-..||..||..|+..=. ......+++.+|..
T Consensus 203 yaPYS--~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~ 267 (294)
T 1ctt_A 203 HMPYS--KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKAD 267 (294)
T ss_dssp BCTTT--CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT
T ss_pred CCCcC--CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCC
Confidence 44455 3479999998776655444433 345677899999999986421 12356788888753
No 30
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=28.02 E-value=1.2e+02 Score=24.39 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=30.9
Q ss_pred CCceeEEEEEeeCCeEE-EEEc--CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 108 DSSVGCAFVIPQLHIVK-KQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 108 ~~~vG~Avi~~~~~~~~-~~kL--~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
+..||+.++. ++.+.. .+.. ......--||..||..|.+..........++++
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 3468888775 433332 3311 112224579999999998765444445566665
No 31
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=26.75 E-value=1.8e+02 Score=22.66 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCceeEEEEEeeCCeE-EEEEcC--CCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 108 DSSVGCAFVIPQLHIV-KKQTLN--PKSSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 108 ~~~vG~Avi~~~~~~~-~~~kL~--~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
+..||+.++. ++.+. ..+... .....--||..||..|.+..........++++
T Consensus 26 ~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 3468988886 44443 233211 11234579999999998765444456666665
No 32
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=26.37 E-value=1.1e+02 Score=23.31 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=30.7
Q ss_pred CCceeEEEEEeeCCeE-EEEEc--CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEe
Q psy15595 108 DSSVGCAFVIPQLHIV-KKQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAVIIS 161 (221)
Q Consensus 108 ~~~vG~Avi~~~~~~~-~~~kL--~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~S 161 (221)
+..||+.++. ++++. ..+.. ......--||..||..|.+..........++++
T Consensus 23 ~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 3468988886 44443 23311 112224579999999998764333445555553
No 33
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.99 E-value=68 Score=25.14 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=43.7
Q ss_pred HhhhccCCceEEEecCCCCCCceeEEEEEeeCCeEEEEEcCCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeC------
Q psy15595 89 NMNENYGDFVQVYTDGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD------ 162 (221)
Q Consensus 89 ~i~~~~~~~~~IYTDGSK~~~~vG~Avi~~~~~~~~~~kL~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SD------ 162 (221)
+|...++|.+.-.||-+..+- ++... ... ..|+-....|.|.|.+.|.. |.+-+.+.+.+.+.|.--
T Consensus 18 hI~asfNNTivtiTD~~G~~~---i~~~S--~G~-~gfkg~~ksTp~AA~~aa~~-~~~~a~e~Gi~~v~V~vkG~gg~~ 90 (137)
T 3j20_M 18 HIYSSFNNTIIHITDITGAET---ISRWS--GGM-VVKADRDEPSPYAAMLAARR-AAEEALEKGIVGVHIRVRAPGGSK 90 (137)
T ss_dssp EEEECSSCEEEEEEESSSCSE---EEEEE--GGG-TCSCTTTSSSHHHHHHHHHH-HHHHHHHHTEEEEEEEEECCCSSS
T ss_pred EEEcCCCCEEEEEEcCCCCEE---EEEEc--cce-eeecCCccCCHHHHHHHHHH-HHHHHHHcCCeEEEEEEECCCCCC
Confidence 455566777777788765431 00001 000 12344577889999988854 444455666676655432
Q ss_pred -------cHHHHHHHhC
Q psy15595 163 -------SLSALQAISS 172 (221)
Q Consensus 163 -------S~SaL~aI~n 172 (221)
-++||++|+.
T Consensus 91 ~~~pG~GresairaL~~ 107 (137)
T 3j20_M 91 SKTPGPGAQAAIRALAR 107 (137)
T ss_dssp CCSCCTHHHHHHHHHHH
T ss_pred CcCCCCcHHHHHHHHHh
Confidence 3777777753
No 34
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=25.83 E-value=1.4e+02 Score=23.58 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCceeEEEEEeeCCeE-EEEEc--CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeC
Q psy15595 108 DSSVGCAFVIPQLHIV-KKQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD 162 (221)
Q Consensus 108 ~~~vG~Avi~~~~~~~-~~~kL--~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SD 162 (221)
+..||+.++. ++++. ..+.. ......--||..||..|-+..........++++-
T Consensus 31 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 31 GGPFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp SSSCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 4568987773 44433 23321 1112245799999999987654444556666654
No 35
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=25.36 E-value=1.4e+02 Score=23.78 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=36.8
Q ss_pred CCceeEEEEEeeCCeE-EEEEc--CCCCchhHHHHHHHHHHHHHhhhcCCCcEEEEeC---cHHHHHHHh
Q psy15595 108 DSSVGCAFVIPQLHIV-KKQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD---SLSALQAIS 171 (221)
Q Consensus 108 ~~~vG~Avi~~~~~~~-~~~kL--~~~~SIftAEl~AI~~AL~~~~~~~~~~i~I~SD---S~SaL~aI~ 171 (221)
+..||+.++. ++.+. ..+.. ......--||..||..|.+..........++++- +-.+.++|.
T Consensus 42 ~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~EPC~mC~~ai~ 110 (171)
T 1wwr_A 42 EVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALV 110 (171)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSCCBHHHHHHHH
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECCCChHHHHHHHH
Confidence 4478988886 44443 23311 1112245799999999988654445567777753 334444443
Done!