RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15595
(221 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 1e-04
Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 90/234 (38%)
Query: 21 LYENSTKLNPTVGIQREL-------LMNDIPFHKV-ILQREPKESWLHKKPSCNLSLTLY 72
LY+ S +++ + F + I+ P LT++
Sbjct: 1635 LYKTS----KAA---QDVWNRADNHFKDTYGFSILDIVINNPVN------------LTIH 1675
Query: 73 KKDGMPHQVFQQEFQRNMNENYGDFV-QVYTDGSK---------SDSSVGCAFVIP---- 118
F E + + ENY + + DG ++ S F
Sbjct: 1676 ---------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 119 ------Q----------LHIVKKQTLNPKSSIF--H-----------AELLAISDAVSTI 149
Q +K + L P + F H A++++I V +
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 150 KS--QSIGEAV---IISDSLSALQAI--SSMSHSNPL--VQSIHEEIS--TGDL 192
++ AV + S + AI ++ S +Q + E + TG L
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Score = 34.6 bits (79), Expect = 0.021
Identities = 47/271 (17%), Positives = 77/271 (28%), Gaps = 107/271 (39%)
Query: 7 NPNFKRINNPPYK--VLYENSTKL----NPTVGIQRELLMNDIPFH--KVILQREPKESW 58
NP I+ K + EN + + ++ E + +I H R K
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGL- 1725
Query: 59 LHKKPSCNLSLTLY----------------KKDGM-P-------H------------QVF 82
LS T + K G+ P H V
Sbjct: 1726 --------LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 83 QQE------FQRNMNENYGDFVQV-YTDGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIF 135
E F R G +QV S+ G + P + F
Sbjct: 1778 SIESLVEVVFYR------GMTMQVAVPRDELGRSNYGMIAINPGR-VAAS---------F 1821
Query: 136 HAELLAISDAVSTIKSQS-----I------GEAVIISDSLSALQAISSM-SHSNPLVQSI 183
E A+ V + ++ I + + + L AL ++++ + +Q I
Sbjct: 1822 SQE--ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK--LQKI 1877
Query: 184 HEEISTGDLK--NVSLNLHEVERNRIICHIF 212
D+ SL+L EVE H+F
Sbjct: 1878 -------DIIELQKSLSLEEVEG-----HLF 1896
Score = 31.9 bits (72), Expect = 0.16
Identities = 42/208 (20%), Positives = 62/208 (29%), Gaps = 88/208 (42%)
Query: 60 HKKPSCNLSLTLYKKDGMPH-QVFQQEFQRNMNENYGDFVQVY---TDGSKSDSSVGCAF 115
PS LS++ + QV Q++ N + QV +G+K+
Sbjct: 332 EGVPSPMLSIS-----NLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGAKN-------L 377
Query: 116 VI---PQ--------LHIVK-----KQT---------------LNPKSSIFHAELLAISD 144
V+ PQ L K Q+ L P +S FH+ LL
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVASPFHSHLLV--P 434
Query: 145 AVSTIKSQSIGEAVIISDSLSALQAISSMSHSNPLVQSIHEEISTG-DLKNVSLNLHEVE 203
A I + V + +Q P V G DL+ +S ++ E
Sbjct: 435 ASDLINKDLVKNNVSFNA--KDIQI--------P-VYDTF----DGSDLRVLSGSI--SE 477
Query: 204 R-NRIIC---------------HI--FG 213
R I HI FG
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 27.3 bits (60), Expect = 5.7
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 35/127 (27%)
Query: 113 CAFVIP-----QL-HIV---KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 163
P QL H V K P EL + + SQ + AV I+++
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTP------GELRSYLKGATGH-SQGLVTAVAIAET 286
Query: 164 LS-------ALQAISSM------SHSN-P---LVQSIHEEISTGDLKNVS--LNLHEVER 204
S +AI+ + + P L SI E+ + S L++ + +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 205 NRIICHI 211
++ ++
Sbjct: 347 EQVQDYV 353
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 32.5 bits (74), Expect = 0.048
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 100 VYTDGSKSDSS----VGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 155
YTDGS G A ++ + L +S AEL+A++ A+ + + +
Sbjct: 26 WYTDGSSFLQEGQRRAGAAVTTET-EVIWARALPAGTSAQRAELIALTQALKMAEGKKL- 83
Query: 156 EAVIISDSLSALQAISSMSHSNP 178
+ +DS A S
Sbjct: 84 --NVYTDSRYAFATAHVHSEGRE 104
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.14
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 55 KESWLHKKPSCNLSLTLYKKDGMP 78
K++ L K + SL LY D P
Sbjct: 19 KQA-LKKLQA---SLKLYADDSAP 38
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 30.4 bits (69), Expect = 0.24
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 90 MNENYGDFVQVYTDGSKSDSSVGCAFVIPQLHIVKKQ-------TLNPKSSIFHAELLAI 142
M++ VYTDGS + A+ + V + E+ A
Sbjct: 1 MDDR--TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAA 58
Query: 143 SDAVSTIKSQSIGEAVIISDS 163
AV + + I+ D
Sbjct: 59 LYAVKKASQLGV-KIRILHDY 78
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 29.5 bits (67), Expect = 0.53
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 95 GDFVQVYTDGSKSDSS-----VGCAFVIPQLHIVKKQTLNPKSSIFH---------AELL 140
GDFV VYTDG S A + V +P + AE+
Sbjct: 5 GDFVVVYTDGC---CSSNGRRRPRAGIG-----VYWGPGHPLNVGIRLPGRQTNQRAEIH 56
Query: 141 AISDAVSTIKSQSIGEAVIISDS 163
A A+ K+Q+I + V+ ++S
Sbjct: 57 AACKAIEQAKTQNINKLVLYTNS 79
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Length = 1247
Score = 28.5 bits (63), Expect = 2.4
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 58 WLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMNENYGDFVQVYTDG 104
WL K + ++ L M H + ++ N ++ + D+V+ YTD
Sbjct: 295 WLAPKQGTDAAMAL----AMGHVMLREFHLDNPSQYFTDYVRRYTDM 337
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 4.0
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 1 MHHNSTNPNFKRINNPPYKVLYENSTKLNPTVGIQRELLMNDIPFHKVILQREPK 55
M +N F + PY E L+P + ++ + F+ +Q +
Sbjct: 1493 MIYNKL---FVSKEHAPYTDELEEDVYLDPLARVSKDKKSGSLTFNSKNIQSKDS 1544
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG;
1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Length = 330
Score = 26.5 bits (59), Expect = 6.6
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 13/58 (22%)
Query: 148 TIKSQSIGEAVIISDSLS----------ALQAISSMSHSNPLVQSIHEEISTGDLKNV 195
T Q I A +S + A + ++++ + + V
Sbjct: 99 TTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTVLENF---VEENLIAPV 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 7.6
Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 55/181 (30%)
Query: 79 HQVFQQEFQRN-MNENYGDFVQVYTDGSKSDSSVGCAFVIPQL----------HIVKKQT 127
H +F+ Y D + V+ D + C V HI+ +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 128 -------------LNPKSSI--FHAELLA-----ISDAVSTIKSQSIGEAVIISDSLSAL 167
+ + F E+L + + T + Q + + L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 168 QAISSMSHSNPLVQSIH----EEISTGDLKNVSLNLHEVERNRIICHIFG------SWLS 217
+ N + + + L+ L E+ + + I G +W++
Sbjct: 120 Y------NDNQVFAKYNVSRLQPYLK--LRQA---LLELRPAKNVL-IDGVLGSGKTWVA 167
Query: 218 I 218
+
Sbjct: 168 L 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.380
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,189,622
Number of extensions: 169384
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 14
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)