RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15595
         (221 letters)



>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 27.1 bits (59), Expect = 2.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 131  KSSIFHAELLAISDAVSTIKSQSIGE 156
               +  A  ++I +AV  + +QSIGE
Sbjct: 1205 GYDLSMARPVSIGEAVGIVAAQSIGE 1230


>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 187

 Score = 25.8 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 99  QVYTDGSKSDSSVG 112
           QVY DG KS+ +VG
Sbjct: 158 QVYPDGKKSNFNVG 171


>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
           {Phormidium laminosum [TaxId: 32059]}
          Length = 187

 Score = 25.4 bits (56), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 99  QVYTDGSKSDSSVG 112
           Q+Y  G KS+++VG
Sbjct: 159 QIYPTGEKSNNNVG 172


>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 218

 Score = 25.7 bits (55), Expect = 4.2
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 31  TVGIQRELLMNDIPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNM 90
           T     E+ + D   H V +     E+ L    +   S     +      V ++  +  +
Sbjct: 100 TALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPV 159

Query: 91  NENYGDFVQVYTDGSKSDSS-VGC 113
               G    V    +   +   GC
Sbjct: 160 LTFAGGLPDVPVTSAPVTAFYRGC 183


>d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis
           [TaxId: 119602]}
          Length = 138

 Score = 24.9 bits (54), Expect = 6.3
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 16  PPYKVLYENSTKLNPTVGIQRELLMNDIPFHKVILQREP 54
           P Y +   +S+ +     I R +L  D  F   +  RE 
Sbjct: 62  PGYTIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQ 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 785,141
Number of extensions: 33096
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)