BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15596
         (149 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I1L|A Chain A, Structural And Biological Features Of Foxp3 Dimerization
           Relevant To Regulatory T Cell Function
          Length = 93

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           + L  +GVCKWPGCE V E+ + F KH   +H LD++  AQ  +Q +VV  LE QL+ E+
Sbjct: 7   YPLLANGVCKWPGCEKVFEEPEEFLKHCQADHLLDEKGKAQCLLQREVVQSLEQQLELEK 66

Query: 121 DRLQAMMLHL 130
           ++L AM  HL
Sbjct: 67  EKLGAMQAHL 76


>pdb|3QDH|A Chain A, Crystal Structure Of Actinomyces Fimbrial Adhesin Fima
          Length = 290

 Score = 29.3 bits (64), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 63  LFGHGV---CKWP-GCEAVCEDVQAFYKHLNKEHNLDDRSTA 100
           L G+GV    K+P    A   D ++FYK+      LDDR TA
Sbjct: 15  LNGYGVGSLIKFPVSSTAPTLDAKSFYKYFQLRDTLDDRLTA 56


>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate
           Kinase(Tcpyk)in Complex With Ponceau S.
 pdb|3QV9|B Chain B, Crystal Structure Of Trypanosoma Cruzi Pyruvate
           Kinase(Tcpyk)in Complex With Ponceau S
          Length = 499

 Score = 26.9 bits (58), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 38  GISRREWMNGDDQKANESYAEKVHFLFGHGVCKWPGCE 75
           G+   + ++ +D+   + Y    HFL     C  PGCE
Sbjct: 147 GVLSLKVLSKEDEYTLKCYVNNAHFLTDRKGCNLPGCE 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.130    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,234,940
Number of Sequences: 62578
Number of extensions: 148160
Number of successful extensions: 272
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 13
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)