RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15596
(149 letters)
>gnl|CDD|167581 PRK03670, PRK03670, competence damage-inducible protein A;
Provisional.
Length = 252
Score = 30.5 bits (69), Expect = 0.23
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 74 CEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQM 106
CE E ++ FY+ L K+ +DD + +AR +M
Sbjct: 93 CEDCLERIKEFYEELYKKGLIDDPTLNEARKKM 125
>gnl|CDD|226055 COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope
biogenesis, outer membrane].
Length = 372
Score = 28.6 bits (64), Expect = 1.4
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 100 AQARVQMQVVSQLE---LQLQKERDRLQAMM 127
AQA VQM +VS+LE + +Q + D ++++M
Sbjct: 216 AQAEVQMSLVSKLEDELIVIQAQLDTVKSVM 246
>gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
Length = 623
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 102 ARVQMQVVS--QLELQLQKERDRLQAMM 127
A+V Q +S QLE Q ER+RLQ +
Sbjct: 43 AKVNGQEISRAQLEQAFQSERNRLQQQL 70
>gnl|CDD|237168 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 581
Score = 27.9 bits (63), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 18 TSHAFKHTLFVKGLGLLVSMGI 39
+HAF H L+ KGL L +S G
Sbjct: 295 VAHAFNHILY-KGL-LFMSAGA 314
>gnl|CDD|222629 pfam14257, DUF4349, Domain of unknown function (DUF4349). This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 282 and
353 amino acids in length. There is a single completely
conserved residue D that may be functionally important.
Length = 262
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 93 NLDDRSTAQAR-VQMQVV---SQLELQLQKERDRLQAMM 127
+ RS A V Q V ++L+ L+ +RL A++
Sbjct: 119 KVTSRSI-SAEDVTEQYVDLEARLK-ALRASEERLLALL 155
>gnl|CDD|130083 TIGR01010, BexC_CtrB_KpsE, polysaccharide export inner-membrane
protein, BexC/CtrB/KpsE family. This family contains
gamma proteobacterial proteins involved in capsule
polysaccharide export [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 362
Score = 27.8 bits (62), Expect = 2.4
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 85 YKHLNKEHNLDDRSTAQARVQMQVVSQLELQL---QKERDRLQAMMLH-------LHMTK 134
Y+ NK + AQ+ Q+ ++S LE +L Q + +L+++ L +
Sbjct: 196 YQIKNKVFDPK----AQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQA-R 250
Query: 135 QQSQTVEQEKQTPKV 149
+S + ++Q ++
Sbjct: 251 IKSLRKQIDEQRNQL 265
>gnl|CDD|203998 pfam08606, Prp19, Prp19/Pso4-like. This regions is found
specifically in PRP19-like protein. The region
represented by this family covers the sequence
implicated in self-interaction and a coiled-coiled
motif. PRP19-like proteins form an oligomer that is
necessary for spliceosome assembly.
Length = 70
Score = 25.7 bits (57), Expect = 4.1
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 116 LQKERDRLQAMMLHLHMTKQQSQTVEQE 143
LQ E D A+ML ++Q QE
Sbjct: 13 LQNEWD---AIMLETFELRKQLDQTRQE 37
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.0 bits (60), Expect = 5.4
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 85 YKHLNKEHNLDDRSTAQARVQM----QVVSQLELQLQKERDRLQAMMLHLHMTKQQSQTV 140
K L +E + + ++ + LE L++ R +L+ + L K++ +
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728
Query: 141 EQEKQ 145
E+E +
Sbjct: 729 EEELE 733
>gnl|CDD|226535 COG4049, COG4049, Uncharacterized protein containing
archaeal-type C2H2 Zn-finger [General function
prediction only].
Length = 65
Score = 25.0 bits (54), Expect = 5.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 57 AEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEH 92
A KV G + P C V + + +H+NK H
Sbjct: 6 AIKVRDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAH 41
>gnl|CDD|204831 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
This domain is found in bacteria. This domain is about
360 amino acids in length. This domain is found
associated with pfam00271, pfam00176. The function of
this domain is not known, but structurally it forms an
alpha-beta fold in nature with a central beta-sheet
flanked by helices and loops, the beta-sheet being
mainly antiparallel and flanked by four alpha helices,
among which the two longer helices exhibit a coiled-coil
arrangement.
Length = 362
Score = 26.3 bits (59), Expect = 7.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 92 HNLDDRSTAQARVQM-----QVVSQLELQLQKERDRLQAM 126
L ++ A Q+ Q Q++ QL E RL+A+
Sbjct: 281 EQLLQKAEKLAEEQLEEIIEQAKQQMQQQLSAELARLKAL 320
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like. The
sequences found in this family are similar to a region
found in the beta-subunit of glucosidase II, which is
also known as protein kinase C substrate 80K-H (PRKCSH).
The enzyme catalyzes the sequential removal of two
alpha-1,3-linked glucose residues in the second step of
N-linked oligosaccharide processing. The beta subunit is
required for the solubility and stability of the
heterodimeric enzyme, and is involved in retaining the
enzyme within the endoplasmic reticulum.
Length = 176
Score = 25.9 bits (57), Expect = 7.4
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 74 CEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQ-----LELQLQKERDRLQAMML 128
C C ++ ++ EHN ++ + + + + +Q L+ +L++ D L A
Sbjct: 115 CPNKCGEIARQFEEYLTEHNNSVKNGLKIKEGLLLAAQKKRDELKKRLKELEDSLPAKQQ 174
Query: 129 HL 130
L
Sbjct: 175 RL 176
>gnl|CDD|205086 pfam12808, Mto2_bdg, Micro-tubular organiser Mto1 C-term
Mto2-binding region. The C-terminal region of the
micro-tubular organiser protein 1 (mto1) is the binding
domain for attachment to Mto2p.The full-length Mto1
protein is required for microtubule nucleation from
non-spindle pole body MTOCs in fission yeast. The
interaction of Mto2p with this region of Mto1 is
critical for anchoring the cytokinetic actin ring to the
medial region of the cell and for proper coordination of
mitosis with cytokinesis.
Length = 52
Score = 24.3 bits (53), Expect = 8.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 89 NKEHNLDDRSTAQARVQMQVVSQLELQLQKERDR 122
+E L DRS A+ R++ L+ + ER R
Sbjct: 16 EREARLLDRSGARERLEELDAENRLLKAELERLR 49
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 26.2 bits (57), Expect = 8.7
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 93 NLDDRSTAQARVQM-QVVSQLELQLQKERDRLQAMMLHLHMTKQQSQTVEQEK 144
L D + ++ QV ++E+ ++KER+ A++ L +Q++++ +K
Sbjct: 921 LLKDDFEFSCKCKIEQVQKEIEVIIRKERESKDAVIAEL---EQEAESTGDDK 970
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.130 0.396
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,029,826
Number of extensions: 588985
Number of successful extensions: 735
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 38
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)