RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15596
         (149 letters)



>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
          zinc fingers, beta-BETA-alpha, solution structure; NMR
          {Saccharomyces cerevisiae}
          Length = 64

 Score = 31.9 bits (72), Expect = 0.010
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 68 VCKWPGCEAVCEDVQAFYKHLNKEH 92
           CKW  C      +    +HL K+H
Sbjct: 3  KCKWKECPESASSLFDLQRHLLKDH 27



 Score = 28.1 bits (62), Expect = 0.29
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 68 VCKWPGCEAVCEDVQAFYKHLNKEH 92
           C W  C+ + +D  +   H+N +H
Sbjct: 40 ACNWEDCDFLGDDTASIVNHINAQH 64


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.35
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 29/136 (21%)

Query: 39  ISRREWMNGDDQ---KANESYAEKVH-------------FLFGHGVCKWPGC------EA 76
           I +R+ +  D+Q   K N S  +                 +   GV    G         
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTWVALD 169

Query: 77  VCEDVQAFYKHLNKEH--NLDDRSTAQARVQMQ--VVSQLELQLQKERDRLQAMMLHLHM 132
           VC   +   K   K    NL + ++ +  ++M   ++ Q++       D    + L +H 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 133 TKQQSQTVEQEKQTPK 148
            + + + + + K    
Sbjct: 230 IQAELRRLLKSKPYEN 245


>4dnh_A Uncharacterized protein; structural genomics, PSI-biology,
          protein structure initiati YORK structural genomics
          research consortium; 2.50A {Sinorhizobium meliloti}
          Length = 396

 Score = 28.5 bits (63), Expect = 0.87
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 12 GSRDWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDDQKANE 54
           + DW  + AF+H L+  GLG+  SM  ++R  M     +A E
Sbjct: 57 PAIDWERTLAFRHRLWDLGLGVAESMDTAQRG-MGLGWPEARE 98


>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
          PRMT3, structural genomics, riken structural
          genomics/proteomics initiative, RSGI; NMR {Mus
          musculus} SCOP: g.37.1.5
          Length = 121

 Score = 26.9 bits (59), Expect = 1.7
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 74 CEAVCEDVQAFYKHLNKEHNLD 95
          C+ +    +  + H   EH  +
Sbjct: 21 CDRLFASAEETFSHCKLEHQFN 42


>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
          structural genomics, NPPSFA; NMR {Homo sapiens}
          Length = 95

 Score = 25.7 bits (56), Expect = 3.9
 Identities = 4/28 (14%), Positives = 7/28 (25%)

Query: 65 GHGVCKWPGCEAVCEDVQAFYKHLNKEH 92
                   C+     +     H+  EH
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEH 49


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 5.7
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 14/57 (24%)

Query: 14  RD-WHTSHAFKHTLFVKGLGLLVSM-------------GISRREWMNGDDQKANESY 56
           RD + T H     L       L  +             G++  EW+       ++ Y
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 25.9 bits (56), Expect = 6.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 81  VQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDR 122
           +Q  Y    KE+++D    A+    +++VS LEL   K++ +
Sbjct: 120 IQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGK 161


>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB:
           1rym_A 1ryn_A
          Length = 205

 Score = 25.2 bits (56), Expect = 8.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 2   GLKHITSHVMGSRDWH 17
           GL+++  H+ G R++ 
Sbjct: 129 GLQNVIEHLDGRREFP 144


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,095,944
Number of extensions: 107587
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 19
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)