BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15597
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I1L|A Chain A, Structural And Biological Features Of Foxp3 Dimerization
           Relevant To Regulatory T Cell Function
          Length = 93

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 139 LFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDR 198
           L  +GVCKWPGCE V E+ + F KH   +H LD++  AQ  +Q +VV  LE QL+ E+++
Sbjct: 9   LLANGVCKWPGCEKVFEEPEEFLKHCQADHLLDEKGKAQCLLQREVVQSLEQQLELEKEK 68

Query: 199 LQAL 202
           L A+
Sbjct: 69  LGAM 72


>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate
           Kinase(Tcpyk)in Complex With Ponceau S.
 pdb|3QV9|B Chain B, Crystal Structure Of Trypanosoma Cruzi Pyruvate
           Kinase(Tcpyk)in Complex With Ponceau S
          Length = 499

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 65  PGQPMMMPSGVNQSDINSLWNNFSMENQDVSIPAGDKSMFGINGLLVSMGISRREWMNGD 124
           PG  +++ S      I +    F +E   +SI         I+  ++S+ +  +E     
Sbjct: 104 PGDTVLVTSDPAFEKIGT-KEKFYIEYPRLSITVRPGGFIYIDDGVLSLKVLSKE----- 157

Query: 125 DQKANESYAEKVHFLFGHGVCKWPGCE 151
           D+   + Y    HFL     C  PGCE
Sbjct: 158 DEYTLKCYVNNAHFLTDRKGCNLPGCE 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.129    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,548,483
Number of Sequences: 62578
Number of extensions: 204754
Number of successful extensions: 392
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 9
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)