RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15597
(204 letters)
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 34.3 bits (78), Expect = 0.003
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 144 VCKWPGCEAVCEDVQAFYKHLNKEH 168
CKW C + +HL K+H
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDH 27
Score = 30.0 bits (67), Expect = 0.095
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 144 VCKWPGCEAVCEDVQAFYKHLNKEH 168
C W C+ + +D + H+N +H
Sbjct: 40 ACNWEDCDFLGDDTASIVNHINAQH 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.006
Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 48/172 (27%)
Query: 74 GVNQSDINSLWNNFSMENQDVSIPAGDKSMF--------GINGLLVSMGISR-------R 118
V + + L + E + P+ M+ N + +SR R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 119 EW--------------MNG-----------DDQKANESYAEKVHFL-FGHGVCKWPGCEA 152
+ + G K K+ +L + C P E
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSP--ET 197
Query: 153 VCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQALKI 204
V E +Q ++ ++ ++++ + +L K + L +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Score = 34.4 bits (78), Expect = 0.020
Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 66/256 (25%)
Query: 3 QMQEKLFIQHTSSQHIDGDKSAEAMHDMAFQQNQLIHQLEMTQRKY-----VLQH----- 52
+M +KL Q + D S+ + Q +L L+ + Y VL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLLNVQNAK 257
Query: 53 ---AIGLQSQA-STSRPGQPMMMPSGVNQSDINSLWNNFSMENQD--------VSIPAGD 100
A L + T+R Q S + I+ ++ ++ + + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 101 --KSMFGINGLLVSM-GISRREWMN--------GDDQKAN---------ESYAEKVHF-- 138
+ + N +S+ S R+ + D+ E + F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 139 --LFGHGV-------CK-WPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVS-- 186
+F W + + DV L+K S + + + +S
Sbjct: 378 LSVFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHK------YSLVEKQPKESTISIP 429
Query: 187 QLELQLQKERDRLQAL 202
+ L+L+ + + AL
Sbjct: 430 SIYLELKVKLENEYAL 445
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.20
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 34 QNQLIHQLEMTQRKYVLQHAIGLQSQAS 61
+ Q + +L+ + + Y A L +A+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
Score = 27.6 bits (60), Expect = 2.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 181 QMQVVSQLELQLQK-ERDRLQALKI 204
+ Q + +L+ L+ D AL I
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.51
Identities = 21/183 (11%), Positives = 47/183 (25%), Gaps = 75/183 (40%)
Query: 9 FIQHTSSQHIDGDKSA-----EAMHDMAFQQNQL----IHQL----------EMTQRKYV 49
F+ + SS F+ L IH L + + K +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLT-EFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 50 LQHAIGLQSQASTSRP-------------------------GQPMMMPSGVNQS---DIN 81
+++ + ++ RP GQ G ++
Sbjct: 123 IKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ------GNTDDYFEELR 174
Query: 82 SLWNNFSMENQD------------VSIPAGDKSMFGINGLLVSMGISRREWMNGDDQKAN 129
L+ + + D + + +F + G++ EW+ +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-------TQGLNILEWLENPSNTPD 227
Query: 130 ESY 132
+ Y
Sbjct: 228 KDY 230
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 27.6 bits (61), Expect = 1.2
Identities = 4/28 (14%), Positives = 7/28 (25%)
Query: 141 GHGVCKWPGCEAVCEDVQAFYKHLNKEH 168
C+ + H+ EH
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 28.5 bits (63), Expect = 1.9
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 168 HNLDDRSTAQARVQMQVV-----SQLELQLQKERDRLQALK 203
H + AQ + + ++ + +L E RL+AL+
Sbjct: 885 HAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALR 925
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 26.9 bits (59), Expect = 2.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 150 CEAVCEDVQAFYKHLNKEHNLD 171
C+ + + + H EH +
Sbjct: 21 CDRLFASAEETFSHCKLEHQFN 42
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 26.5 bits (58), Expect = 7.3
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 10 IQHTSSQHIDGD---KSAEAMHDMAFQQNQLIHQLEMTQRKYVLQHAIG 55
+++T QH D + AM ++A N+ +LE + Q +I
Sbjct: 272 LKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIE 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.129 0.379
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,842,195
Number of extensions: 150459
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 15
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)