Query psy15598
Match_columns 258
No_of_seqs 161 out of 1180
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 16:41:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 99.9 7.4E-24 2.5E-28 164.9 12.1 126 33-158 3-128 (128)
2 1k78_A Paired box protein PAX5 99.9 1.6E-22 5.6E-27 164.6 16.4 132 25-161 10-146 (149)
3 2k27_A Paired box protein PAX- 99.9 1.1E-20 3.9E-25 155.7 15.5 139 30-168 8-146 (159)
4 1u78_A TC3 transposase, transp 99.7 5.4E-16 1.9E-20 123.2 13.4 102 45-159 4-105 (141)
5 3hot_A Transposable element ma 99.4 6.7E-13 2.3E-17 119.8 12.7 101 45-160 4-113 (345)
6 1tc3_C Protein (TC3 transposas 98.9 2.1E-09 7.1E-14 70.0 5.9 47 46-92 4-50 (51)
7 2jn6_A Protein CGL2762, transp 98.7 4.1E-08 1.4E-12 74.4 7.0 47 46-92 4-52 (97)
8 1hlv_A CENP-B, major centromer 98.7 5E-07 1.7E-11 71.3 13.1 110 45-158 5-131 (131)
9 2elh_A CG11849-PA, LD40883P; s 98.5 1.4E-07 4.9E-12 70.8 6.8 48 45-92 20-67 (87)
10 2glo_A Brinker CG9653-PA; prot 98.5 1.8E-07 6E-12 65.5 5.3 47 45-91 3-53 (59)
11 2rn7_A IS629 ORFA; helix, all 98.3 4E-07 1.4E-11 70.0 4.9 49 44-92 3-59 (108)
12 1jko_C HIN recombinase, DNA-in 98.3 4.9E-07 1.7E-11 59.5 3.0 42 47-88 5-46 (52)
13 4fcy_A Transposase; rnaseh, DD 98.2 8.6E-06 2.9E-10 77.9 11.8 103 52-158 33-156 (529)
14 2x48_A CAG38821; archeal virus 98.0 5.6E-06 1.9E-10 56.2 3.9 39 48-86 14-54 (55)
15 2pjp_A Selenocysteine-specific 97.7 1.9E-05 6.6E-10 62.6 3.1 100 51-160 7-110 (121)
16 2jrt_A Uncharacterized protein 97.7 8.9E-05 3.1E-09 57.5 6.4 50 44-93 29-79 (95)
17 1iuf_A Centromere ABP1 protein 97.5 0.00069 2.4E-08 55.1 9.7 113 44-159 8-143 (144)
18 2ao9_A Phage protein; structur 97.2 0.00036 1.2E-08 58.7 5.4 43 45-87 21-72 (155)
19 1jhg_A Trp operon repressor; c 97.2 0.0008 2.7E-08 52.9 7.1 36 52-88 46-82 (101)
20 3jth_A Transcription activator 97.2 0.00025 8.5E-09 53.1 3.8 70 48-117 20-90 (98)
21 3cuo_A Uncharacterized HTH-typ 97.2 0.00026 8.8E-09 52.3 3.5 71 48-118 21-93 (99)
22 2o8x_A Probable RNA polymerase 97.2 0.00089 3E-08 46.5 6.2 43 47-89 15-57 (70)
23 2heo_A Z-DNA binding protein 1 97.1 0.00049 1.7E-08 49.3 4.4 45 51-95 10-57 (67)
24 4dyq_A Gene 1 protein; GP1, oc 97.1 0.00042 1.4E-08 56.3 4.5 43 47-89 12-55 (140)
25 3pqk_A Biofilm growth-associat 97.0 0.00049 1.7E-08 51.9 4.0 51 47-97 19-70 (102)
26 1oyi_A Double-stranded RNA-bin 97.0 0.00086 2.9E-08 50.9 4.8 48 49-96 15-63 (82)
27 2oqg_A Possible transcriptiona 97.0 0.00068 2.3E-08 51.5 4.3 72 47-118 17-89 (114)
28 1qbj_A Protein (double-strande 97.0 0.00093 3.2E-08 50.1 4.9 47 48-94 7-58 (81)
29 3hug_A RNA polymerase sigma fa 97.0 0.0015 5.1E-08 48.7 6.1 42 47-88 37-78 (92)
30 2kko_A Possible transcriptiona 97.0 0.00018 6.3E-09 55.4 1.0 49 48-96 22-71 (108)
31 2htj_A P fimbrial regulatory p 96.9 0.0019 6.6E-08 47.0 6.2 42 53-94 2-45 (81)
32 2jpc_A SSRB; DNA binding prote 96.9 0.0013 4.4E-08 44.9 4.8 36 54-89 4-39 (61)
33 3f6o_A Probable transcriptiona 96.9 0.00039 1.3E-08 54.2 2.3 72 47-118 14-86 (118)
34 1p4w_A RCSB; solution structur 96.9 0.0022 7.5E-08 49.4 6.4 44 45-89 32-75 (99)
35 2oa4_A SIR5; structure, struct 96.8 0.0013 4.3E-08 51.8 4.9 48 45-92 31-79 (101)
36 1ku3_A Sigma factor SIGA; heli 96.8 0.0026 8.9E-08 45.3 6.2 43 47-89 10-56 (73)
37 2p7v_B Sigma-70, RNA polymeras 96.8 0.0021 7.1E-08 45.2 5.5 43 47-89 5-51 (68)
38 1qgp_A Protein (double strande 96.7 0.0013 4.3E-08 48.6 4.0 47 48-94 11-62 (77)
39 1r1u_A CZRA, repressor protein 96.7 0.0015 5.1E-08 49.8 4.5 49 47-95 22-71 (106)
40 1fse_A GERE; helix-turn-helix 96.7 0.0027 9.3E-08 44.5 5.5 42 46-88 10-51 (74)
41 1s7o_A Hypothetical UPF0122 pr 96.7 0.0032 1.1E-07 49.5 6.4 42 47-88 22-63 (113)
42 1je8_A Nitrate/nitrite respons 96.7 0.0026 8.9E-08 46.7 5.5 42 47-89 21-62 (82)
43 3neu_A LIN1836 protein; struct 96.7 0.01 3.4E-07 47.0 9.2 100 45-157 11-120 (125)
44 1y0u_A Arsenical resistance op 96.7 0.0022 7.6E-08 47.9 5.1 47 48-94 28-74 (96)
45 1u2w_A CADC repressor, cadmium 96.7 0.0015 5E-08 51.3 4.2 49 48-96 39-89 (122)
46 3uj3_X DNA-invertase; helix-tu 96.7 0.00028 9.6E-09 59.4 0.0 44 47-90 142-185 (193)
47 1tty_A Sigma-A, RNA polymerase 96.6 0.0042 1.4E-07 46.0 6.2 43 47-89 18-64 (87)
48 3f6v_A Possible transcriptiona 96.6 0.00055 1.9E-08 56.4 1.3 75 46-120 53-128 (151)
49 3kor_A Possible Trp repressor; 96.6 0.0035 1.2E-07 50.6 5.7 39 49-87 61-99 (119)
50 3frw_A Putative Trp repressor 96.5 0.0035 1.2E-07 49.8 5.5 39 50-88 45-83 (107)
51 1zx4_A P1 PARB, plasmid partit 96.5 0.0045 1.5E-07 53.6 6.6 48 44-91 4-53 (192)
52 2jsc_A Transcriptional regulat 96.5 0.001 3.5E-08 52.0 2.1 49 48-96 18-67 (118)
53 2w7n_A TRFB transcriptional re 96.4 0.0058 2E-07 47.8 6.1 37 54-90 24-61 (101)
54 3mzy_A RNA polymerase sigma-H 96.4 0.0048 1.6E-07 48.3 5.7 41 47-88 109-149 (164)
55 2vz4_A Tipal, HTH-type transcr 96.4 0.011 3.7E-07 45.7 7.6 68 63-134 1-69 (108)
56 3c57_A Two component transcrip 96.4 0.0074 2.5E-07 45.5 6.4 42 47-89 27-68 (95)
57 1x3u_A Transcriptional regulat 96.4 0.0057 1.9E-07 43.5 5.5 41 48-89 17-57 (79)
58 1ub9_A Hypothetical protein PH 96.4 0.002 6.8E-08 47.4 3.1 72 47-118 12-88 (100)
59 1xsv_A Hypothetical UPF0122 pr 96.4 0.0058 2E-07 47.9 5.9 42 47-88 25-66 (113)
60 2jml_A DNA binding domain/tran 96.3 0.0081 2.8E-07 44.0 6.2 68 64-135 6-76 (81)
61 2zkz_A Transcriptional repress 96.3 0.002 6.7E-08 48.8 2.9 47 47-94 23-71 (99)
62 2p5k_A Arginine repressor; DNA 96.3 0.013 4.5E-07 40.1 6.8 45 111-160 7-51 (64)
63 1tc3_C Protein (TC3 transposas 96.3 0.015 5.2E-07 36.7 6.6 45 102-158 2-46 (51)
64 3e7l_A Transcriptional regulat 96.3 0.0076 2.6E-07 42.3 5.4 38 51-88 19-57 (63)
65 1q06_A Transcriptional regulat 96.2 0.032 1.1E-06 44.9 9.7 67 64-134 1-68 (135)
66 2rnj_A Response regulator prot 96.2 0.0047 1.6E-07 45.9 4.4 42 47-89 29-70 (91)
67 3ulq_B Transcriptional regulat 96.2 0.0093 3.2E-07 44.9 6.0 42 47-89 29-70 (90)
68 1g2h_A Transcriptional regulat 96.1 0.0081 2.8E-07 42.1 5.0 41 48-88 18-58 (61)
69 2d1h_A ST1889, 109AA long hypo 96.1 0.0067 2.3E-07 44.7 4.8 48 47-94 18-67 (109)
70 2lkp_A Transcriptional regulat 96.1 0.0059 2E-07 46.9 4.7 46 49-94 30-76 (119)
71 3gp4_A Transcriptional regulat 96.1 0.048 1.6E-06 44.4 10.3 67 64-134 3-70 (142)
72 3plo_X DNA-invertase; resolvas 96.1 0.00094 3.2E-08 56.3 0.0 42 48-89 143-184 (193)
73 1r1t_A Transcriptional repress 96.1 0.0037 1.3E-07 49.3 3.4 48 48-95 43-91 (122)
74 1gdt_A GD resolvase, protein ( 96.1 0.0053 1.8E-07 51.1 4.5 33 54-86 149-181 (183)
75 1or7_A Sigma-24, RNA polymeras 96.1 0.0097 3.3E-07 48.3 5.9 42 48-89 141-182 (194)
76 1jko_C HIN recombinase, DNA-in 96.0 0.0038 1.3E-07 40.3 2.7 45 102-158 2-46 (52)
77 1q1h_A TFE, transcription fact 96.0 0.0044 1.5E-07 47.2 3.4 46 51-96 18-66 (110)
78 1b4a_A Arginine repressor; hel 96.0 0.012 4E-07 48.9 6.1 52 109-165 5-56 (149)
79 2vxz_A Pyrsv_GP04; viral prote 96.0 0.024 8.2E-07 47.7 7.9 102 44-156 1-106 (165)
80 2l0k_A Stage III sporulation p 96.0 0.0085 2.9E-07 46.1 4.8 39 48-86 4-43 (93)
81 2ek5_A Predicted transcription 95.9 0.0075 2.6E-07 48.2 4.7 55 46-100 3-65 (129)
82 3ic7_A Putative transcriptiona 95.9 0.0074 2.5E-07 47.9 4.5 103 44-156 8-119 (126)
83 2fu4_A Ferric uptake regulatio 95.9 0.013 4.4E-07 42.4 5.4 44 51-94 17-69 (83)
84 2r0q_C Putative transposon TN5 95.9 0.0073 2.5E-07 51.3 4.6 35 54-88 166-200 (209)
85 1r8d_A Transcription activator 95.8 0.024 8.1E-07 43.7 7.0 67 64-134 3-70 (109)
86 1z4h_A TORI, TOR inhibition pr 95.8 0.0051 1.7E-07 43.6 2.9 51 64-120 11-63 (66)
87 1ntc_A Protein (nitrogen regul 95.8 0.0096 3.3E-07 44.8 4.5 38 51-88 51-89 (91)
88 3by6_A Predicted transcription 95.8 0.016 5.5E-07 46.0 6.0 53 48-100 12-72 (126)
89 3oou_A LIN2118 protein; protei 95.8 0.039 1.3E-06 41.7 7.9 79 61-160 19-98 (108)
90 1rp3_A RNA polymerase sigma fa 95.8 0.015 5.3E-07 48.3 6.2 43 46-88 186-228 (239)
91 2cyy_A Putative HTH-type trans 95.8 0.029 9.9E-07 45.0 7.5 43 51-93 7-51 (151)
92 1umq_A Photosynthetic apparatu 95.8 0.014 4.7E-07 43.8 5.1 39 50-88 40-79 (81)
93 4ham_A LMO2241 protein; struct 95.7 0.16 5.3E-06 40.3 11.5 54 47-100 14-75 (134)
94 2dg6_A Putative transcriptiona 95.6 0.099 3.4E-06 45.8 11.0 87 64-160 1-91 (222)
95 1u78_A TC3 transposase, transp 95.6 0.024 8E-07 43.9 6.3 42 46-87 59-103 (141)
96 3lsg_A Two-component response 95.6 0.053 1.8E-06 40.5 7.9 77 63-160 19-96 (103)
97 2b0l_A GTP-sensing transcripti 95.6 0.005 1.7E-07 47.6 2.1 45 53-97 30-77 (102)
98 3tqn_A Transcriptional regulat 95.6 0.017 5.8E-07 44.8 5.2 56 45-100 7-70 (113)
99 2pn6_A ST1022, 150AA long hypo 95.5 0.023 7.8E-07 45.3 6.0 44 51-94 3-48 (150)
100 1xn7_A Hypothetical protein YH 95.5 0.022 7.6E-07 42.3 5.4 41 54-94 5-47 (78)
101 2w48_A Sorbitol operon regulat 95.5 0.017 5.8E-07 52.1 5.6 50 51-100 8-58 (315)
102 1j9i_A GPNU1 DBD;, terminase s 95.4 0.0074 2.5E-07 42.8 2.4 23 64-86 3-25 (68)
103 2jt1_A PEFI protein; solution 95.4 0.016 5.6E-07 42.9 4.4 45 50-94 3-55 (77)
104 3iuo_A ATP-dependent DNA helic 95.4 0.077 2.6E-06 42.1 8.5 94 50-154 19-113 (122)
105 3gpv_A Transcriptional regulat 95.4 0.061 2.1E-06 43.9 8.1 68 63-134 16-84 (148)
106 1uxc_A FRUR (1-57), fructose r 95.3 0.03 1E-06 39.9 5.5 43 64-119 1-43 (65)
107 1sfx_A Conserved hypothetical 95.3 0.035 1.2E-06 40.6 6.0 44 51-94 20-65 (109)
108 2p5v_A Transcriptional regulat 95.3 0.032 1.1E-06 45.2 6.1 43 51-93 10-54 (162)
109 2cfx_A HTH-type transcriptiona 95.3 0.035 1.2E-06 44.2 6.2 43 51-93 5-49 (144)
110 2dbb_A Putative HTH-type trans 95.2 0.044 1.5E-06 43.7 6.8 43 51-93 9-53 (151)
111 2w25_A Probable transcriptiona 95.2 0.045 1.5E-06 43.7 6.9 43 51-93 7-51 (150)
112 3hh0_A Transcriptional regulat 95.2 0.045 1.6E-06 44.7 6.9 69 62-134 3-72 (146)
113 2e1c_A Putative HTH-type trans 95.2 0.048 1.6E-06 45.3 7.2 43 51-93 27-71 (171)
114 2cg4_A Regulatory protein ASNC 95.2 0.033 1.1E-06 44.6 6.0 43 51-93 8-52 (152)
115 3i4p_A Transcriptional regulat 95.2 0.032 1.1E-06 45.6 6.0 43 51-93 3-47 (162)
116 3mn2_A Probable ARAC family tr 95.2 0.1 3.4E-06 39.2 8.4 80 61-160 16-97 (108)
117 2k27_A Paired box protein PAX- 95.2 0.026 8.9E-07 45.5 5.4 48 45-92 81-140 (159)
118 2k02_A Ferrous iron transport 95.2 0.024 8.2E-07 43.1 4.8 40 54-93 5-46 (87)
119 1neq_A DNA-binding protein NER 95.2 0.016 5.4E-07 42.2 3.6 32 53-84 11-43 (74)
120 2lfw_A PHYR sigma-like domain; 95.1 0.0088 3E-07 48.2 2.4 44 46-89 92-135 (157)
121 1i1g_A Transcriptional regulat 95.1 0.033 1.1E-06 43.7 5.6 42 52-93 5-48 (141)
122 3oio_A Transcriptional regulat 95.1 0.046 1.6E-06 41.6 6.2 86 54-160 10-100 (113)
123 3t72_q RNA polymerase sigma fa 95.1 0.038 1.3E-06 42.6 5.8 42 47-88 19-64 (99)
124 3u1d_A Uncharacterized protein 95.0 0.057 2E-06 45.0 7.0 69 48-116 26-107 (151)
125 2q1z_A RPOE, ECF SIGE; ECF sig 95.0 0.0079 2.7E-07 48.6 1.7 43 47-89 135-177 (184)
126 3kz3_A Repressor protein CI; f 95.0 0.035 1.2E-06 39.6 5.0 34 52-85 13-47 (80)
127 1x57_A Endothelial differentia 95.0 0.059 2E-06 39.2 6.3 40 46-85 8-48 (91)
128 3eet_A Putative GNTR-family tr 94.9 0.031 1.1E-06 49.8 5.5 57 44-100 26-90 (272)
129 1eto_A FIS, factor for inversi 94.9 0.04 1.4E-06 42.5 5.5 38 51-88 58-96 (98)
130 1r69_A Repressor protein CI; g 94.9 0.029 1E-06 38.1 4.2 32 54-85 4-36 (69)
131 2b5a_A C.BCLI; helix-turn-heli 94.9 0.014 4.9E-07 40.7 2.7 35 51-85 10-45 (77)
132 1rzs_A Antirepressor, regulato 94.9 0.014 4.8E-07 40.7 2.5 28 57-84 4-31 (61)
133 3bhq_A Transcriptional regulat 94.8 0.028 9.7E-07 45.7 4.6 46 40-85 1-54 (211)
134 2q0o_A Probable transcriptiona 94.8 0.051 1.8E-06 46.5 6.4 43 46-89 174-216 (236)
135 2x4h_A Hypothetical protein SS 94.8 0.33 1.1E-05 37.5 10.6 49 62-114 30-78 (139)
136 3b7h_A Prophage LP1 protein 11 94.8 0.043 1.5E-06 38.2 4.9 36 50-85 6-42 (78)
137 1zug_A Phage 434 CRO protein; 94.8 0.044 1.5E-06 37.4 4.8 32 54-85 6-38 (71)
138 2wiu_B HTH-type transcriptiona 94.7 0.059 2E-06 38.5 5.7 36 50-85 11-47 (88)
139 3hrs_A Metalloregulator SCAR; 94.7 0.22 7.6E-06 42.5 10.3 89 63-159 20-118 (214)
140 1xmk_A Double-stranded RNA-spe 94.7 0.041 1.4E-06 41.1 4.9 44 51-94 11-57 (79)
141 2r1j_L Repressor protein C2; p 94.7 0.042 1.4E-06 37.0 4.6 33 53-85 7-40 (68)
142 2a6c_A Helix-turn-helix motif; 94.7 0.048 1.6E-06 39.4 5.2 35 51-85 18-53 (83)
143 2k9s_A Arabinose operon regula 94.7 0.094 3.2E-06 39.4 7.0 78 62-160 19-97 (107)
144 3r0a_A Putative transcriptiona 94.6 0.065 2.2E-06 41.9 6.2 42 53-94 28-73 (123)
145 1y7y_A C.AHDI; helix-turn-heli 94.6 0.058 2E-06 37.1 5.2 35 51-85 13-48 (74)
146 1k78_A Paired box protein PAX5 94.5 0.05 1.7E-06 43.1 5.3 44 46-89 89-144 (149)
147 3mkl_A HTH-type transcriptiona 94.5 0.11 3.6E-06 40.0 7.1 89 50-160 6-99 (120)
148 1l3l_A Transcriptional activat 94.5 0.056 1.9E-06 46.2 5.9 43 46-89 172-214 (234)
149 2ia0_A Putative HTH-type trans 94.5 0.085 2.9E-06 43.7 6.9 43 51-93 17-61 (171)
150 2hoe_A N-acetylglucosamine kin 94.5 0.016 5.6E-07 53.2 2.6 51 44-94 13-64 (380)
151 3g3z_A NMB1585, transcriptiona 94.5 0.19 6.4E-06 38.9 8.4 58 61-118 43-103 (145)
152 1bl0_A Protein (multiple antib 94.4 0.073 2.5E-06 41.6 6.0 91 49-160 9-104 (129)
153 1j5y_A Transcriptional regulat 94.4 0.061 2.1E-06 45.0 5.9 44 51-94 21-68 (187)
154 2qq9_A Diphtheria toxin repres 94.4 0.39 1.3E-05 41.2 11.1 92 60-159 19-122 (226)
155 2kpj_A SOS-response transcript 94.4 0.047 1.6E-06 40.2 4.6 35 51-85 9-44 (94)
156 3s8q_A R-M controller protein; 94.4 0.034 1.2E-06 39.5 3.7 38 48-85 8-46 (82)
157 2qvo_A Uncharacterized protein 94.4 0.038 1.3E-06 41.0 4.1 54 64-118 31-85 (95)
158 1jgs_A Multiple antibiotic res 94.4 0.17 5.8E-06 38.6 8.0 56 62-118 47-106 (138)
159 1adr_A P22 C2 repressor; trans 94.4 0.054 1.9E-06 37.4 4.6 33 53-85 7-40 (76)
160 2hin_A GP39, repressor protein 94.4 0.031 1.1E-06 40.9 3.4 22 65-86 12-33 (71)
161 1uly_A Hypothetical protein PH 94.4 0.052 1.8E-06 46.1 5.4 45 50-94 19-64 (192)
162 2ewt_A BLDD, putative DNA-bind 94.3 0.039 1.3E-06 37.9 3.7 35 51-85 8-45 (71)
163 1z7u_A Hypothetical protein EF 94.3 0.066 2.3E-06 41.0 5.4 44 51-94 22-67 (112)
164 2cob_A LCOR protein; MLR2, KIA 94.3 0.11 3.9E-06 38.2 6.3 44 44-87 10-54 (70)
165 2xi8_A Putative transcription 94.3 0.042 1.4E-06 36.8 3.8 25 61-85 12-36 (66)
166 3f6w_A XRE-family like protein 94.3 0.067 2.3E-06 37.9 5.0 34 52-85 15-49 (83)
167 3sxy_A Transcriptional regulat 94.1 0.13 4.3E-06 43.5 7.3 68 45-112 10-84 (218)
168 2k9q_A Uncharacterized protein 94.1 0.064 2.2E-06 37.8 4.6 32 54-85 5-37 (77)
169 2h09_A Transcriptional regulat 94.1 0.15 5.1E-06 40.5 7.3 63 52-117 41-105 (155)
170 1on2_A Transcriptional regulat 94.1 0.15 5.2E-06 39.7 7.3 51 62-115 21-71 (142)
171 3oop_A LIN2960 protein; protei 94.1 0.17 5.8E-06 39.1 7.5 57 62-118 50-109 (143)
172 2eth_A Transcriptional regulat 94.1 0.2 6.7E-06 39.4 8.0 63 54-117 47-115 (154)
173 3b73_A PHIH1 repressor-like pr 94.1 0.11 3.6E-06 41.0 6.3 62 50-115 12-78 (111)
174 2ef8_A C.ECOT38IS, putative tr 94.1 0.081 2.8E-06 37.3 5.2 34 52-85 11-45 (84)
175 3clo_A Transcriptional regulat 94.1 0.09 3.1E-06 45.7 6.5 43 46-89 196-238 (258)
176 3ech_A MEXR, multidrug resista 94.1 0.14 5E-06 39.5 7.0 57 62-118 50-109 (142)
177 3nrv_A Putative transcriptiona 94.1 0.18 6.2E-06 39.0 7.6 70 48-118 38-112 (148)
178 3edp_A LIN2111 protein; APC883 94.1 0.055 1.9E-06 47.0 5.0 57 44-100 6-70 (236)
179 1v4r_A Transcriptional repress 94.0 0.026 9E-07 42.5 2.5 51 50-100 18-72 (102)
180 2zhg_A Redox-sensitive transcr 94.0 0.061 2.1E-06 44.3 4.9 66 62-134 10-78 (154)
181 3bd1_A CRO protein; transcript 94.0 0.062 2.1E-06 38.2 4.4 25 61-86 10-34 (79)
182 2l8n_A Transcriptional repress 94.0 0.077 2.6E-06 38.0 4.8 41 64-120 10-50 (67)
183 2hr3_A Probable transcriptiona 93.9 0.19 6.5E-06 38.8 7.4 65 54-118 38-108 (147)
184 3v4g_A Arginine repressor; vib 93.9 0.11 3.7E-06 44.6 6.4 54 108-165 32-85 (180)
185 2frh_A SARA, staphylococcal ac 93.9 0.14 4.8E-06 39.6 6.6 58 62-119 52-112 (127)
186 3jw4_A Transcriptional regulat 93.9 0.21 7.1E-06 38.9 7.6 57 62-118 56-115 (148)
187 2cw1_A SN4M; lambda CRO fold, 93.9 0.058 2E-06 38.7 3.9 23 64-86 14-36 (65)
188 2ict_A Antitoxin HIGA; helix-t 93.8 0.078 2.7E-06 38.8 4.7 31 55-85 12-43 (94)
189 3omt_A Uncharacterized protein 93.8 0.053 1.8E-06 37.7 3.6 25 61-85 19-43 (73)
190 3e6m_A MARR family transcripti 93.8 0.22 7.5E-06 39.5 7.6 57 62-118 66-125 (161)
191 3tgn_A ADC operon repressor AD 93.7 0.22 7.4E-06 38.4 7.4 70 48-118 36-109 (146)
192 2pg4_A Uncharacterized protein 93.7 0.065 2.2E-06 39.5 4.2 56 63-118 30-87 (95)
193 2hzt_A Putative HTH-type trans 93.7 0.031 1.1E-06 42.6 2.4 44 51-94 14-59 (107)
194 2rdp_A Putative transcriptiona 93.7 0.23 8E-06 38.4 7.6 69 48-117 40-113 (150)
195 1rr7_A Middle operon regulator 93.7 0.045 1.5E-06 44.2 3.5 47 44-90 73-119 (129)
196 2pij_A Prophage PFL 6 CRO; tra 93.7 0.079 2.7E-06 36.3 4.4 25 60-85 11-35 (67)
197 2p5k_A Arginine repressor; DNA 93.7 0.15 5.3E-06 34.5 5.8 36 50-85 3-46 (64)
198 2fbh_A Transcriptional regulat 93.7 0.14 4.7E-06 39.3 6.2 40 55-94 41-83 (146)
199 3lap_A Arginine repressor; arg 93.7 0.13 4.5E-06 43.5 6.5 52 109-165 20-71 (170)
200 3szt_A QCSR, quorum-sensing co 93.7 0.11 3.6E-06 44.9 6.0 44 45-89 173-216 (237)
201 3eco_A MEPR; mutlidrug efflux 93.7 0.23 7.7E-06 38.0 7.4 56 63-118 47-105 (139)
202 1l0o_C Sigma factor; bergerat 93.6 0.012 4.2E-07 48.8 0.0 42 47-88 198-239 (243)
203 3bj6_A Transcriptional regulat 93.6 0.21 7.1E-06 38.8 7.2 64 54-117 43-111 (152)
204 4g6q_A Putative uncharacterize 93.6 0.044 1.5E-06 46.0 3.5 49 46-94 18-68 (182)
205 3qao_A LMO0526 protein, MERR-l 93.6 0.17 6E-06 44.7 7.5 69 62-134 2-71 (249)
206 1z6r_A MLC protein; transcript 93.6 0.09 3.1E-06 48.4 5.8 45 50-94 15-61 (406)
207 2gxg_A 146AA long hypothetical 93.6 0.19 6.4E-06 38.6 6.8 57 61-117 48-107 (146)
208 3fmy_A HTH-type transcriptiona 93.6 0.077 2.6E-06 37.5 4.2 25 61-85 22-46 (73)
209 3k0l_A Repressor protein; heli 93.5 0.21 7E-06 39.7 7.1 64 55-118 50-118 (162)
210 3bro_A Transcriptional regulat 93.5 0.24 8E-06 37.8 7.2 32 63-94 50-81 (141)
211 3ihu_A Transcriptional regulat 93.5 0.18 6E-06 42.7 7.0 49 64-112 40-88 (222)
212 2nyx_A Probable transcriptiona 93.5 0.21 7.2E-06 40.0 7.2 57 62-118 58-117 (168)
213 3t76_A VANU, transcriptional r 93.5 0.085 2.9E-06 39.5 4.5 31 55-85 28-59 (88)
214 1hw1_A FADR, fatty acid metabo 93.5 0.071 2.4E-06 45.3 4.6 54 47-100 7-68 (239)
215 3g5g_A Regulatory protein; tra 93.5 0.061 2.1E-06 40.6 3.7 42 44-85 21-63 (99)
216 3vib_A MTRR; helix-turn-helix 93.4 0.11 3.9E-06 41.9 5.5 41 45-85 4-52 (210)
217 2dg7_A Putative transcriptiona 93.4 0.085 2.9E-06 42.0 4.7 42 44-86 1-50 (195)
218 1lmb_3 Protein (lambda repress 93.4 0.12 3.9E-06 37.4 5.0 50 61-126 28-77 (92)
219 3c7j_A Transcriptional regulat 93.3 0.059 2E-06 46.7 3.9 52 49-100 32-86 (237)
220 3bs3_A Putative DNA-binding pr 93.3 0.078 2.7E-06 36.7 3.8 25 61-85 21-45 (76)
221 3rkx_A Biotin-[acetyl-COA-carb 93.3 0.09 3.1E-06 48.2 5.2 42 51-92 3-48 (323)
222 2fq4_A Transcriptional regulat 93.3 0.13 4.5E-06 41.1 5.6 42 44-85 5-54 (192)
223 3qq6_A HTH-type transcriptiona 93.2 0.096 3.3E-06 37.4 4.3 34 52-85 11-45 (78)
224 2fa5_A Transcriptional regulat 93.2 0.35 1.2E-05 37.9 8.0 63 55-117 53-120 (162)
225 1mkm_A ICLR transcriptional re 93.2 0.13 4.6E-06 44.6 6.0 69 49-120 6-77 (249)
226 2qww_A Transcriptional regulat 93.2 0.27 9.3E-06 38.3 7.2 64 55-118 45-115 (154)
227 3op9_A PLI0006 protein; struct 93.2 0.091 3.1E-06 39.8 4.3 35 51-85 9-44 (114)
228 2fe3_A Peroxide operon regulat 93.1 0.17 5.7E-06 40.8 6.0 44 51-94 22-73 (145)
229 3cjn_A Transcriptional regulat 93.1 0.19 6.3E-06 39.7 6.2 64 54-117 55-123 (162)
230 2di3_A Bacterial regulatory pr 93.1 0.19 6.5E-06 43.0 6.7 50 51-100 12-69 (239)
231 4hbl_A Transcriptional regulat 93.1 0.18 6.2E-06 39.4 6.1 63 55-117 45-112 (149)
232 2fu4_A Ferric uptake regulatio 93.1 0.16 5.5E-06 36.4 5.3 50 106-161 15-66 (83)
233 3kp7_A Transcriptional regulat 93.0 0.31 1E-05 38.0 7.3 58 60-117 48-110 (151)
234 3fm5_A Transcriptional regulat 93.0 0.17 5.8E-06 39.5 5.7 56 63-118 54-112 (150)
235 1sfu_A 34L protein; protein/Z- 92.9 0.065 2.2E-06 39.9 3.0 30 64-93 30-59 (75)
236 3eus_A DNA-binding protein; st 92.9 0.093 3.2E-06 38.1 3.9 33 52-84 15-48 (86)
237 1s3j_A YUSO protein; structura 92.9 0.27 9.1E-06 38.2 6.8 63 55-117 41-108 (155)
238 1tbx_A ORF F-93, hypothetical 92.9 0.069 2.4E-06 39.4 3.2 64 55-118 12-81 (99)
239 1lj9_A Transcriptional regulat 92.9 0.24 8E-06 38.1 6.4 55 62-117 42-100 (144)
240 1fx7_A Iron-dependent represso 92.9 1.1 3.7E-05 38.3 11.2 62 54-118 12-76 (230)
241 2o03_A Probable zinc uptake re 92.9 0.14 4.8E-06 40.4 5.1 43 51-93 11-61 (131)
242 1qbj_A Protein (double-strande 92.9 0.14 4.7E-06 38.1 4.7 46 107-162 8-56 (81)
243 1z05_A Transcriptional regulat 92.8 0.068 2.3E-06 49.8 3.8 44 52-95 40-85 (429)
244 1ku9_A Hypothetical protein MJ 92.8 0.08 2.7E-06 40.6 3.6 33 62-94 40-72 (152)
245 2wv0_A YVOA, HTH-type transcri 92.8 0.17 5.6E-06 44.1 5.9 54 47-100 10-71 (243)
246 1jhf_A LEXA repressor; LEXA SO 92.8 0.18 6.2E-06 42.0 6.0 43 52-94 11-57 (202)
247 3qp6_A CVIR transcriptional re 92.8 0.17 5.7E-06 44.6 6.0 42 47-89 197-238 (265)
248 3s2w_A Transcriptional regulat 92.8 0.17 5.7E-06 40.0 5.5 55 62-117 63-121 (159)
249 3cdh_A Transcriptional regulat 92.7 0.23 8E-06 38.8 6.3 65 54-118 46-115 (155)
250 2nnn_A Probable transcriptiona 92.7 0.23 7.8E-06 37.8 5.9 70 47-117 35-109 (140)
251 1mzb_A Ferric uptake regulatio 92.6 0.21 7.2E-06 39.7 5.9 44 51-94 18-70 (136)
252 1qgp_A Protein (double strande 92.6 0.066 2.3E-06 39.2 2.7 45 106-160 11-58 (77)
253 2ovg_A Phage lambda CRO; trans 92.6 0.1 3.5E-06 37.4 3.6 28 58-86 9-36 (66)
254 2fe3_A Peroxide operon regulat 92.6 0.29 1E-05 39.3 6.8 52 105-162 19-71 (145)
255 2l1p_A DNA-binding protein SAT 92.6 0.14 4.7E-06 38.9 4.4 34 51-85 21-54 (83)
256 3bja_A Transcriptional regulat 92.6 0.18 6.3E-06 38.2 5.3 63 54-117 36-104 (139)
257 2p4w_A Transcriptional regulat 92.6 0.072 2.5E-06 45.7 3.3 47 48-94 12-59 (202)
258 3eyy_A Putative iron uptake re 92.4 0.36 1.2E-05 38.9 7.1 53 104-162 15-67 (145)
259 2wte_A CSA3; antiviral protein 92.4 0.2 6.7E-06 44.2 5.9 60 52-113 153-214 (244)
260 3f52_A CLP gene regulator (CLG 92.3 0.13 4.6E-06 39.0 4.2 37 49-85 26-63 (117)
261 2jvl_A TRMBF1; coactivator, he 92.3 0.26 9E-06 37.4 5.8 41 45-85 28-71 (107)
262 2ppx_A AGR_C_3184P, uncharacte 92.2 0.15 5.1E-06 37.9 4.3 31 54-84 33-64 (99)
263 2f2e_A PA1607; transcription f 92.2 0.23 7.9E-06 40.0 5.7 42 53-94 26-68 (146)
264 1pdn_C Protein (PRD paired); p 92.2 0.073 2.5E-06 40.0 2.6 42 46-87 74-127 (128)
265 2hs5_A Putative transcriptiona 92.2 0.18 6.1E-06 43.6 5.4 37 64-100 52-88 (239)
266 3bwg_A Uncharacterized HTH-typ 92.2 0.14 4.9E-06 44.3 4.8 51 50-100 12-66 (239)
267 4ghj_A Probable transcriptiona 92.2 0.23 7.7E-06 38.1 5.4 37 48-84 33-70 (101)
268 3nqo_A MARR-family transcripti 92.2 0.49 1.7E-05 38.9 7.8 71 48-118 39-115 (189)
269 2o03_A Probable zinc uptake re 92.2 0.15 5E-06 40.4 4.4 49 110-163 12-61 (131)
270 1z91_A Organic hydroperoxide r 92.1 0.25 8.6E-06 38.0 5.6 34 62-95 53-86 (147)
271 2a61_A Transcriptional regulat 92.1 0.3 1E-05 37.4 6.1 64 54-117 36-104 (145)
272 3bpv_A Transcriptional regulat 92.1 0.23 7.8E-06 37.8 5.3 63 55-117 33-100 (138)
273 3bdd_A Regulatory protein MARR 92.1 0.31 1.1E-05 37.1 6.1 61 54-114 34-99 (142)
274 1yyv_A Putative transcriptiona 92.0 0.22 7.5E-06 39.6 5.3 64 51-114 35-103 (131)
275 3cwr_A Transcriptional regulat 92.0 0.24 8.2E-06 39.1 5.5 42 45-86 9-60 (208)
276 2xrn_A HTH-type transcriptiona 92.0 0.14 4.8E-06 44.3 4.5 42 54-95 9-53 (241)
277 1qpz_A PURA, protein (purine n 92.0 0.23 7.9E-06 43.6 5.9 40 64-119 1-40 (340)
278 2zb9_A Putative transcriptiona 92.0 0.15 5.1E-06 41.2 4.3 42 44-85 16-65 (214)
279 1bia_A BIRA bifunctional prote 91.9 0.2 6.9E-06 45.4 5.6 44 51-94 5-50 (321)
280 4aik_A Transcriptional regulat 91.9 0.73 2.5E-05 36.7 8.4 33 62-94 45-77 (151)
281 2fsw_A PG_0823 protein; alpha- 91.9 0.16 5.5E-06 38.4 4.2 43 52-94 26-70 (107)
282 1b0n_A Protein (SINR protein); 91.9 0.18 6.3E-06 37.4 4.5 30 56-85 6-36 (111)
283 3ivp_A Putative transposon-rel 91.9 0.42 1.4E-05 36.7 6.7 36 50-85 11-47 (126)
284 1mzb_A Ferric uptake regulatio 91.9 0.31 1.1E-05 38.6 6.1 52 105-162 15-68 (136)
285 3deu_A Transcriptional regulat 91.9 0.36 1.2E-05 38.8 6.5 46 48-94 51-99 (166)
286 2p8t_A Hypothetical protein PH 91.7 0.41 1.4E-05 41.5 7.0 88 48-139 15-123 (200)
287 4fe7_A Xylose operon regulator 91.7 0.58 2E-05 42.6 8.4 79 61-160 319-398 (412)
288 3lwj_A Putative TETR-family tr 91.7 0.22 7.5E-06 39.5 5.0 37 48-84 9-53 (202)
289 2l49_A C protein; P2 bacteriop 91.6 0.23 7.9E-06 36.3 4.7 31 55-85 8-39 (99)
290 3f8m_A GNTR-family protein tra 91.6 0.14 4.8E-06 44.7 4.0 50 49-100 20-72 (248)
291 2fbi_A Probable transcriptiona 91.6 0.28 9.6E-06 37.3 5.3 57 62-118 49-108 (142)
292 3vk0_A NHTF, transcriptional r 91.6 0.29 9.9E-06 37.2 5.3 36 49-84 19-55 (114)
293 2hsg_A Glucose-resistance amyl 91.6 0.23 8E-06 43.4 5.4 23 64-86 3-25 (332)
294 3hta_A EBRA repressor; TETR fa 91.6 0.22 7.6E-06 40.8 5.0 42 44-85 21-70 (217)
295 3o9x_A Uncharacterized HTH-typ 91.5 0.2 6.9E-06 39.0 4.5 25 61-85 82-106 (133)
296 3hsr_A HTH-type transcriptiona 91.5 0.14 4.6E-06 39.8 3.5 64 54-117 39-107 (140)
297 2bnm_A Epoxidase; oxidoreducta 91.5 0.13 4.5E-06 42.3 3.5 36 50-85 9-45 (198)
298 3dv8_A Transcriptional regulat 91.4 0.36 1.2E-05 39.3 6.1 32 63-94 169-200 (220)
299 3f3x_A Transcriptional regulat 91.4 0.3 1E-05 37.6 5.4 64 55-118 41-108 (144)
300 2fbk_A Transcriptional regulat 91.4 0.35 1.2E-05 39.2 6.0 55 64-118 87-144 (181)
301 3vp5_A Transcriptional regulat 91.4 0.33 1.1E-05 38.9 5.7 38 47-84 8-53 (189)
302 2bv6_A MGRA, HTH-type transcri 91.3 0.24 8.3E-06 38.0 4.7 63 54-117 40-108 (142)
303 2eby_A Putative HTH-type trans 91.2 0.1 3.5E-06 39.4 2.4 33 53-85 12-46 (113)
304 3cec_A Putative antidote prote 91.2 0.19 6.6E-06 37.4 3.9 32 54-85 21-53 (104)
305 2xig_A Ferric uptake regulatio 91.2 0.33 1.1E-05 39.3 5.6 51 106-162 25-76 (150)
306 3cjd_A Transcriptional regulat 91.1 0.29 1E-05 39.5 5.2 39 47-85 8-54 (198)
307 2xig_A Ferric uptake regulatio 91.1 0.36 1.2E-05 39.1 5.8 45 49-93 25-77 (150)
308 2hku_A A putative transcriptio 91.1 0.21 7.1E-06 40.5 4.3 41 45-85 14-61 (215)
309 2dg8_A Putative TETR-family tr 91.1 0.19 6.4E-06 40.1 4.0 40 46-85 4-51 (193)
310 3kz9_A SMCR; transcriptional r 91.1 0.4 1.4E-05 37.7 5.9 40 46-85 12-59 (206)
311 3df8_A Possible HXLR family tr 91.0 0.27 9.4E-06 37.7 4.7 61 51-112 27-91 (111)
312 2fxa_A Protease production reg 91.0 0.57 1.9E-05 39.5 7.1 61 61-121 60-123 (207)
313 2oz6_A Virulence factor regula 90.9 0.2 7E-06 40.3 4.1 31 64-94 165-195 (207)
314 2dk5_A DNA-directed RNA polyme 90.8 0.27 9.3E-06 37.2 4.5 32 63-94 36-67 (91)
315 3ryp_A Catabolite gene activat 90.8 0.21 7.1E-06 40.4 4.0 31 64-94 168-198 (210)
316 2wui_A MEXZ, transcriptional r 90.7 0.3 1E-05 39.5 5.0 38 48-85 8-53 (210)
317 2g7u_A Transcriptional regulat 90.7 0.16 5.4E-06 44.4 3.4 44 51-94 14-60 (257)
318 3gbg_A TCP pilus virulence reg 90.7 0.52 1.8E-05 40.4 6.7 85 54-160 172-261 (276)
319 2v7f_A RPS19, RPS19E SSU ribos 90.6 0.28 9.5E-06 40.6 4.7 51 64-117 68-132 (150)
320 2d6y_A Putative TETR family re 90.6 0.21 7.3E-06 40.4 3.9 37 50-86 7-51 (202)
321 1y9q_A Transcriptional regulat 90.6 0.33 1.1E-05 39.8 5.2 35 51-85 11-46 (192)
322 2pex_A Transcriptional regulat 90.6 0.28 9.7E-06 38.2 4.5 46 48-94 45-92 (153)
323 1d5y_A ROB transcription facto 90.5 0.27 9.4E-06 42.5 4.8 86 54-160 6-96 (292)
324 3geu_A Intercellular adhesion 90.5 0.16 5.4E-06 40.1 3.0 36 49-84 1-44 (189)
325 2o38_A Hypothetical protein; a 90.5 0.38 1.3E-05 37.7 5.2 32 54-85 43-75 (120)
326 2i10_A Putative TETR transcrip 90.5 0.2 6.7E-06 40.6 3.6 41 44-85 5-53 (202)
327 4dyq_A Gene 1 protein; GP1, oc 90.4 0.32 1.1E-05 39.0 4.9 48 98-157 6-53 (140)
328 3boq_A Transcriptional regulat 90.4 0.31 1.1E-05 38.2 4.6 63 55-117 51-119 (160)
329 1ic8_A Hepatocyte nuclear fact 90.3 1.3 4.6E-05 38.0 8.9 109 50-158 29-188 (194)
330 2o0y_A Transcriptional regulat 90.3 0.14 4.7E-06 44.9 2.7 42 54-95 26-70 (260)
331 3iwz_A CAP-like, catabolite ac 90.3 0.24 8.3E-06 40.6 4.0 31 64-94 188-218 (230)
332 3qkx_A Uncharacterized HTH-typ 90.3 0.4 1.4E-05 37.2 5.1 37 49-85 6-50 (188)
333 1ft9_A Carbon monoxide oxidati 90.3 0.31 1.1E-05 40.1 4.7 32 64-95 164-195 (222)
334 3k69_A Putative transcription 90.2 0.14 4.8E-06 42.3 2.6 52 44-95 7-60 (162)
335 3lhq_A Acrab operon repressor 90.2 0.44 1.5E-05 37.8 5.4 37 49-85 12-56 (220)
336 4ev0_A Transcription regulator 90.2 0.25 8.6E-06 40.1 4.1 31 64-94 164-194 (216)
337 2zcw_A TTHA1359, transcription 90.2 0.25 8.6E-06 40.1 4.0 31 64-94 147-177 (202)
338 3mq0_A Transcriptional repress 90.2 0.18 6.2E-06 44.7 3.4 41 54-94 33-76 (275)
339 3dkw_A DNR protein; CRP-FNR, H 90.1 0.23 7.8E-06 40.6 3.8 32 64-95 179-210 (227)
340 4ets_A Ferric uptake regulatio 90.1 0.38 1.3E-05 39.7 5.1 52 106-163 31-85 (162)
341 3egq_A TETR family transcripti 90.1 0.39 1.3E-05 37.2 4.9 35 51-85 4-46 (170)
342 2f07_A YVDT; helix-turn-helix, 90.1 0.35 1.2E-05 38.8 4.8 37 49-85 8-52 (197)
343 3h5t_A Transcriptional regulat 90.0 0.28 9.7E-06 43.5 4.6 41 64-120 10-50 (366)
344 2w57_A Ferric uptake regulatio 90.0 0.37 1.3E-05 39.0 4.9 52 105-162 14-67 (150)
345 3kjx_A Transcriptional regulat 90.0 0.3 1E-05 43.0 4.7 23 64-86 11-33 (344)
346 3e97_A Transcriptional regulat 90.0 0.31 1E-05 40.2 4.5 32 64-95 176-207 (231)
347 3mwm_A ZUR, putative metal upt 90.0 0.34 1.2E-05 38.8 4.6 43 51-93 14-64 (139)
348 3b81_A Transcriptional regulat 90.0 0.31 1.1E-05 38.4 4.4 37 48-84 8-52 (203)
349 2eh3_A Transcriptional regulat 89.9 0.33 1.1E-05 38.2 4.4 35 51-85 2-44 (179)
350 2w57_A Ferric uptake regulatio 89.9 0.35 1.2E-05 39.2 4.7 43 51-93 17-68 (150)
351 2fmy_A COOA, carbon monoxide o 89.9 0.27 9.2E-06 40.3 4.0 31 64-94 168-198 (220)
352 4b8x_A SCO5413, possible MARR- 89.8 0.46 1.6E-05 37.5 5.3 55 63-117 51-108 (147)
353 3b02_A Transcriptional regulat 89.8 0.24 8.4E-06 40.0 3.7 31 64-94 140-170 (195)
354 2xdn_A HTH-type transcriptiona 89.8 0.22 7.4E-06 40.2 3.3 36 50-85 10-53 (210)
355 2gqq_A Leucine-responsive regu 89.8 0.027 9.3E-07 45.9 -2.2 45 49-93 11-57 (163)
356 1p6r_A Penicillinase repressor 89.8 0.54 1.9E-05 33.5 5.1 46 48-94 7-58 (82)
357 3cdl_A Transcriptional regulat 89.7 0.36 1.2E-05 38.9 4.6 37 48-84 6-50 (203)
358 3trb_A Virulence-associated pr 89.7 0.5 1.7E-05 36.1 5.2 26 60-85 24-49 (104)
359 3d0s_A Transcriptional regulat 89.7 0.28 9.7E-06 40.3 4.1 32 64-95 178-209 (227)
360 2x48_A CAG38821; archeal virus 89.7 0.32 1.1E-05 32.1 3.6 43 102-156 10-54 (55)
361 1zyb_A Transcription regulator 89.7 0.31 1.1E-05 40.6 4.3 31 64-94 187-217 (232)
362 3knw_A Putative transcriptiona 89.7 0.52 1.8E-05 37.4 5.5 38 48-85 11-56 (212)
363 2fjr_A Repressor protein CI; g 89.6 0.41 1.4E-05 39.1 4.9 34 51-85 9-42 (189)
364 3anp_C Transcriptional repress 89.6 0.5 1.7E-05 37.8 5.4 36 50-85 8-51 (204)
365 3mwm_A ZUR, putative metal upt 89.6 0.21 7.1E-06 40.0 3.0 53 105-163 11-64 (139)
366 3loc_A HTH-type transcriptiona 89.5 0.37 1.3E-05 38.2 4.5 36 50-85 17-60 (212)
367 3k2z_A LEXA repressor; winged 89.5 0.66 2.3E-05 38.7 6.2 31 64-94 25-55 (196)
368 2bgc_A PRFA; bacterial infecti 89.5 0.51 1.7E-05 39.4 5.5 33 63-95 169-202 (238)
369 3mlf_A Transcriptional regulat 89.5 0.38 1.3E-05 36.8 4.3 30 56-85 28-58 (111)
370 3lmm_A Uncharacterized protein 89.5 0.31 1E-05 48.2 4.7 97 55-161 434-558 (583)
371 1l9z_H Sigma factor SIGA; heli 89.5 0.5 1.7E-05 45.3 6.1 42 47-88 375-420 (438)
372 3u2r_A Regulatory protein MARR 89.4 0.22 7.5E-06 39.7 3.1 57 63-119 62-121 (168)
373 1r8e_A Multidrug-efflux transp 89.4 0.18 6.2E-06 43.8 2.7 65 64-134 6-74 (278)
374 3bqz_B HTH-type transcriptiona 89.4 0.33 1.1E-05 38.0 4.0 23 63-85 22-44 (194)
375 3q0w_A HTH-type transcriptiona 89.4 0.48 1.6E-05 39.1 5.2 42 44-85 37-86 (236)
376 3ppb_A Putative TETR family tr 89.4 0.3 1E-05 38.1 3.7 35 51-85 9-51 (195)
377 3dew_A Transcriptional regulat 89.3 0.35 1.2E-05 37.9 4.1 37 50-86 7-51 (206)
378 1zs4_A Regulatory protein CII; 89.3 0.23 7.9E-06 37.6 2.9 33 54-87 16-48 (83)
379 3eyy_A Putative iron uptake re 89.3 0.58 2E-05 37.6 5.5 43 51-93 19-68 (145)
380 4a0z_A Transcription factor FA 89.3 0.28 9.6E-06 41.7 3.8 41 39-82 3-45 (190)
381 1a04_A Nitrate/nitrite respons 89.2 0.57 1.9E-05 38.1 5.5 40 48-88 155-194 (215)
382 2y75_A HTH-type transcriptiona 89.2 0.38 1.3E-05 37.4 4.2 33 64-96 27-59 (129)
383 2gau_A Transcriptional regulat 89.2 0.33 1.1E-05 40.0 4.0 31 64-94 181-211 (232)
384 1pb6_A Hypothetical transcript 89.1 0.57 2E-05 37.1 5.3 37 48-84 15-59 (212)
385 3c3w_A Two component transcrip 89.1 0.57 2E-05 38.8 5.5 41 47-88 149-189 (225)
386 3mky_B Protein SOPB; partition 89.1 0.82 2.8E-05 39.4 6.5 108 44-160 20-133 (189)
387 2h8r_A Hepatocyte nuclear fact 89.0 4.4 0.00015 35.6 11.3 34 52-85 32-66 (221)
388 3la7_A Global nitrogen regulat 89.0 0.34 1.2E-05 40.7 4.0 31 64-94 194-224 (243)
389 3vpr_A Transcriptional regulat 88.9 0.46 1.6E-05 37.5 4.6 35 52-86 4-46 (190)
390 3crj_A Transcription regulator 88.9 0.42 1.4E-05 38.5 4.4 37 48-84 11-55 (199)
391 3kxa_A NGO0477 protein, putati 88.9 0.37 1.3E-05 38.7 4.0 25 61-85 79-103 (141)
392 3e6c_C CPRK, cyclic nucleotide 88.9 0.39 1.3E-05 40.3 4.3 54 63-122 177-230 (250)
393 3f1b_A TETR-like transcription 88.8 0.63 2.1E-05 36.5 5.3 36 49-84 12-55 (203)
394 3pas_A TETR family transcripti 88.8 0.46 1.6E-05 37.0 4.5 36 50-85 7-50 (195)
395 2g7s_A Transcriptional regulat 88.8 0.21 7.1E-06 39.0 2.4 36 50-85 7-50 (194)
396 2oer_A Probable transcriptiona 88.7 0.46 1.6E-05 38.6 4.6 37 49-85 22-66 (214)
397 2np5_A Transcriptional regulat 88.7 0.39 1.3E-05 38.7 4.1 38 48-85 6-51 (203)
398 1ixc_A CBNR, LYSR-type regulat 88.7 1.1 3.6E-05 37.5 7.0 57 55-114 7-65 (294)
399 3bru_A Regulatory protein, TET 88.7 0.46 1.6E-05 38.1 4.5 37 49-85 28-72 (222)
400 2id3_A Putative transcriptiona 88.6 0.47 1.6E-05 38.9 4.7 38 49-86 38-83 (225)
401 3lfp_A CSP231I C protein; tran 88.6 0.6 2E-05 34.3 4.8 30 55-84 5-39 (98)
402 2o7t_A Transcriptional regulat 88.6 0.59 2E-05 37.2 5.1 36 50-85 7-50 (199)
403 3hhg_A Transcriptional regulat 88.6 1.1 3.9E-05 37.6 7.1 58 54-114 8-67 (306)
404 3kcc_A Catabolite gene activat 88.5 0.41 1.4E-05 40.8 4.3 32 64-95 218-249 (260)
405 3gzi_A Transcriptional regulat 88.5 0.66 2.2E-05 37.1 5.3 37 50-86 16-60 (218)
406 3bdn_A Lambda repressor; repre 88.5 0.25 8.6E-06 41.7 2.9 35 52-86 18-53 (236)
407 2ia2_A Putative transcriptiona 88.5 0.21 7.3E-06 43.8 2.5 42 53-94 23-67 (265)
408 3dcf_A Transcriptional regulat 88.5 0.63 2.2E-05 37.0 5.2 37 49-85 29-73 (218)
409 2ibd_A Possible transcriptiona 88.4 0.67 2.3E-05 37.1 5.3 36 50-85 13-56 (204)
410 3g1o_A Transcriptional regulat 88.4 0.45 1.5E-05 39.8 4.4 42 44-85 36-85 (255)
411 4fx0_A Probable transcriptiona 88.4 1.8 6.1E-05 34.2 7.8 55 64-118 53-109 (148)
412 3dpj_A Transcription regulator 88.4 0.7 2.4E-05 36.3 5.3 37 49-85 6-50 (194)
413 2auw_A Hypothetical protein NE 88.4 0.5 1.7E-05 40.0 4.7 31 55-85 94-125 (170)
414 2ofy_A Putative XRE-family tra 88.3 0.6 2E-05 33.1 4.5 24 62-85 26-49 (86)
415 2jj7_A Hemolysin II regulatory 88.3 0.54 1.9E-05 36.8 4.6 38 49-86 5-50 (186)
416 2nx4_A Transcriptional regulat 88.3 0.69 2.4E-05 36.9 5.3 36 50-85 9-52 (194)
417 4aci_A HTH-type transcriptiona 88.3 0.38 1.3E-05 37.8 3.7 39 48-86 11-57 (191)
418 2zcx_A SCO7815, TETR-family tr 88.2 0.77 2.6E-05 38.3 5.8 37 48-84 20-64 (231)
419 3jsj_A Putative TETR-family tr 88.2 0.41 1.4E-05 37.6 3.8 37 49-85 7-50 (190)
420 3cta_A Riboflavin kinase; stru 88.1 0.33 1.1E-05 41.4 3.5 55 63-117 27-81 (230)
421 3ljl_A Transcriptional regulat 88.0 0.4 1.4E-05 37.3 3.6 38 49-86 12-57 (156)
422 3bjb_A Probable transcriptiona 88.0 0.65 2.2E-05 37.7 5.1 37 49-85 20-64 (207)
423 1iuf_A Centromere ABP1 protein 88.0 0.25 8.6E-06 39.7 2.5 52 103-159 9-62 (144)
424 2qtq_A Transcriptional regulat 87.9 0.59 2E-05 37.0 4.7 38 49-86 14-59 (213)
425 3mnl_A KSTR, transcriptional r 87.9 0.55 1.9E-05 37.0 4.4 37 49-85 18-62 (203)
426 2hyt_A TETR-family transcripti 87.9 0.32 1.1E-05 39.0 3.0 37 49-85 10-54 (197)
427 3on4_A Transcriptional regulat 87.8 0.51 1.7E-05 36.7 4.1 35 51-85 10-52 (191)
428 2gfn_A HTH-type transcriptiona 87.8 0.61 2.1E-05 37.9 4.7 36 50-85 8-51 (209)
429 3n0r_A Response regulator; sig 87.8 0.48 1.7E-05 41.8 4.4 43 48-90 112-154 (286)
430 3qbm_A TETR transcriptional re 87.7 0.62 2.1E-05 36.4 4.6 35 50-84 6-48 (199)
431 2qlz_A Transcription factor PF 87.7 0.11 3.7E-06 45.8 0.1 48 48-95 9-57 (232)
432 2esn_A Probable transcriptiona 87.7 0.88 3E-05 38.5 5.9 59 54-115 15-75 (310)
433 3nnr_A Transcriptional regulat 87.6 0.39 1.4E-05 39.1 3.5 36 50-85 4-47 (228)
434 1vi0_A Transcriptional regulat 87.6 0.51 1.7E-05 38.2 4.1 36 50-85 7-50 (206)
435 3bni_A Putative TETR-family tr 87.6 0.78 2.7E-05 37.7 5.3 37 49-85 41-85 (229)
436 2qko_A Possible transcriptiona 87.5 0.38 1.3E-05 38.8 3.3 38 49-86 26-71 (215)
437 1okr_A MECI, methicillin resis 87.5 0.68 2.3E-05 34.9 4.6 47 48-95 8-60 (123)
438 3c2b_A Transcriptional regulat 87.5 0.75 2.6E-05 36.9 5.1 37 50-86 14-58 (221)
439 2gen_A Probable transcriptiona 87.4 0.55 1.9E-05 37.6 4.2 36 50-85 6-49 (197)
440 3col_A Putative transcription 87.4 0.43 1.5E-05 37.2 3.5 36 49-84 8-51 (196)
441 3fx3_A Cyclic nucleotide-bindi 87.3 0.43 1.5E-05 39.4 3.6 29 64-93 179-207 (237)
442 2ras_A Transcriptional regulat 87.3 0.26 8.9E-06 39.5 2.2 36 50-85 10-53 (212)
443 3kkc_A TETR family transcripti 87.3 0.57 2E-05 36.2 4.1 35 50-84 11-53 (177)
444 3e7q_A Transcriptional regulat 87.3 0.58 2E-05 37.0 4.2 38 47-84 10-55 (215)
445 3t8r_A Staphylococcus aureus C 87.2 0.33 1.1E-05 39.1 2.8 32 64-95 29-60 (143)
446 1ylf_A RRF2 family protein; st 87.2 0.47 1.6E-05 38.2 3.6 32 64-95 31-62 (149)
447 2v57_A TETR family transcripti 87.2 0.86 3E-05 35.6 5.2 38 49-86 12-55 (190)
448 3he0_A Transcriptional regulat 87.2 0.37 1.3E-05 37.8 3.0 35 49-83 9-51 (196)
449 1rkt_A Protein YFIR; transcrip 87.2 0.6 2.1E-05 37.4 4.3 35 50-84 11-53 (205)
450 3rh2_A Hypothetical TETR-like 87.1 0.56 1.9E-05 37.6 4.1 35 51-85 3-45 (212)
451 1hqc_A RUVB; extended AAA-ATPa 87.1 0.89 3.1E-05 39.4 5.7 64 47-114 244-312 (324)
452 1hlv_A CENP-B, major centromer 87.1 1.4 4.7E-05 33.8 6.2 47 103-159 5-51 (131)
453 4a5n_A Uncharacterized HTH-typ 87.0 0.57 1.9E-05 37.6 4.0 42 53-94 28-71 (131)
454 2a6h_F RNA polymerase sigma fa 87.0 0.54 1.9E-05 44.5 4.5 42 47-88 360-405 (423)
455 2g3b_A Putative TETR-family tr 86.9 0.74 2.5E-05 37.4 4.8 36 50-85 2-45 (208)
456 2w53_A Repressor, SMet; antibi 86.7 0.32 1.1E-05 39.4 2.5 35 50-84 10-52 (219)
457 3npi_A TETR family regulatory 86.7 0.32 1.1E-05 40.6 2.5 36 50-85 17-60 (251)
458 2o0m_A Transcriptional regulat 86.6 0.13 4.4E-06 47.0 0.0 43 52-94 21-65 (345)
459 3r4k_A Transcriptional regulat 86.6 0.42 1.4E-05 41.8 3.3 41 54-94 9-52 (260)
460 3eup_A Transcriptional regulat 86.6 0.47 1.6E-05 37.3 3.3 35 49-83 9-51 (204)
461 2lnb_A Z-DNA-binding protein 1 86.6 1.2 4E-05 33.5 5.2 44 50-93 18-64 (80)
462 3mvp_A TETR/ACRR transcription 86.5 0.93 3.2E-05 35.9 5.1 37 48-84 23-67 (217)
463 1ojl_A Transcriptional regulat 86.5 0.5 1.7E-05 42.1 3.8 38 48-85 265-303 (304)
464 3ccy_A Putative TETR-family tr 86.5 0.33 1.1E-05 38.8 2.4 37 48-84 11-55 (203)
465 1ui5_A A-factor receptor homol 86.5 0.7 2.4E-05 37.7 4.4 37 49-85 7-51 (215)
466 3nrg_A TETR family transcripti 86.4 0.48 1.6E-05 37.8 3.3 37 48-84 10-54 (217)
467 2yve_A Transcriptional regulat 86.4 0.87 3E-05 36.1 4.8 34 52-85 5-46 (185)
468 3f0c_A TETR-molecule A, transc 86.3 0.73 2.5E-05 36.7 4.4 36 50-85 10-53 (216)
469 2guh_A Putative TETR-family tr 86.3 0.88 3E-05 37.3 5.0 39 48-86 36-82 (214)
470 2qwt_A Transcriptional regulat 86.3 0.97 3.3E-05 36.1 5.1 35 51-85 13-54 (196)
471 1yio_A Response regulatory pro 86.2 0.92 3.2E-05 36.5 5.0 40 48-88 143-182 (208)
472 2zcm_A Biofilm operon icaabcd 86.1 0.72 2.5E-05 36.4 4.2 23 63-85 27-49 (192)
473 3klo_A Transcriptional regulat 86.1 0.85 2.9E-05 37.6 4.8 40 48-88 160-199 (225)
474 1yg2_A Gene activator APHA; vi 86.1 2.5 8.6E-05 34.7 7.7 69 52-120 3-85 (179)
475 3g7r_A Putative transcriptiona 86.0 0.99 3.4E-05 36.8 5.1 38 48-85 32-77 (221)
476 2iu5_A DHAS, YCEG, HTH-type dh 86.0 0.42 1.4E-05 38.1 2.7 36 49-84 11-54 (195)
477 2wus_R RODZ, putative uncharac 85.9 1.3 4.6E-05 34.2 5.5 33 53-85 9-42 (112)
478 3rd3_A Probable transcriptiona 85.8 0.53 1.8E-05 36.8 3.2 36 49-84 8-51 (197)
479 2qib_A TETR-family transcripti 85.7 1 3.5E-05 37.1 5.1 38 48-85 10-55 (231)
480 3fxq_A LYSR type regulator of 85.7 1.3 4.4E-05 37.6 5.8 58 54-114 7-66 (305)
481 3v6g_A Probable transcriptiona 85.7 0.82 2.8E-05 37.5 4.4 36 50-85 13-56 (208)
482 1ic8_A Hepatocyte nuclear fact 85.6 0.41 1.4E-05 41.2 2.6 50 108-157 14-67 (194)
483 2ijl_A AGR_C_4647P, molybdenum 85.6 1.8 6.1E-05 34.9 6.3 65 53-117 28-96 (135)
484 3s5r_A Transcriptional regulat 85.5 0.76 2.6E-05 36.5 4.0 37 49-85 8-52 (216)
485 2of7_A Putative TETR-family tr 85.4 1.1 3.9E-05 37.6 5.4 38 49-86 46-91 (260)
486 2o3f_A Putative HTH-type trans 85.4 1.2 3.9E-05 34.5 4.9 43 109-161 21-67 (111)
487 1hsj_A Fusion protein consisti 85.2 0.78 2.7E-05 42.6 4.6 57 62-118 419-478 (487)
488 2of5_A Death domain-containing 85.2 4.3 0.00015 31.8 8.3 73 62-157 34-107 (114)
489 3him_A Probable transcriptiona 85.2 0.33 1.1E-05 38.3 1.8 38 47-84 12-57 (211)
490 2oi8_A Putative regulatory pro 85.2 0.99 3.4E-05 37.2 4.8 38 48-85 13-58 (216)
491 2hyj_A Putative TETR-family tr 85.2 0.89 3E-05 36.6 4.4 36 49-84 10-53 (200)
492 1xwr_A Regulatory protein CII; 85.2 0.57 1.9E-05 36.2 3.0 27 62-88 22-48 (97)
493 2htj_A P fimbrial regulatory p 85.1 1.5 5.3E-05 31.2 5.2 41 111-161 2-42 (81)
494 2elh_A CG11849-PA, LD40883P; s 85.1 2.5 8.7E-05 30.7 6.5 45 102-158 19-63 (87)
495 3nxc_A HTH-type protein SLMA; 85.0 0.42 1.4E-05 38.0 2.3 36 49-84 22-66 (212)
496 1t33_A Putative transcriptiona 85.0 1.4 4.7E-05 35.4 5.4 37 50-86 11-54 (224)
497 3fzv_A Probable transcriptiona 84.9 2.4 8.3E-05 35.5 7.2 57 55-113 10-68 (306)
498 2rek_A Putative TETR-family tr 84.8 1.2 3.9E-05 35.4 4.8 36 50-85 15-57 (199)
499 2fbq_A Probable transcriptiona 84.7 1.3 4.5E-05 36.5 5.4 36 50-85 6-49 (235)
500 3szp_A Transcriptional regulat 84.7 1.2 4E-05 36.9 5.0 58 54-114 6-65 (291)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.91 E-value=7.4e-24 Score=164.88 Aligned_cols=126 Identities=66% Similarity=1.188 Sum_probs=108.2
Q ss_pred chhhccCCcccCCCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHH
Q psy15598 33 GEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVS 112 (258)
Q Consensus 33 ~~~nq~~~~~~~gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~ 112 (258)
|++|++||+|.|++.|+.++|.+|+.++.+|++.++||+.||||++||++|+++|+++|.+.+++++|.++++++++.+.
T Consensus 3 ~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~ 82 (128)
T 1pdn_C 3 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIEN 82 (128)
T ss_dssp EEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHH
T ss_pred chHhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999887776655467788888899
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcc
Q psy15598 113 YIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKI 158 (258)
Q Consensus 113 ~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~ 158 (258)
.|.+++.++|.++.++|++.|.+.|+......+|.+||+|+|++++
T Consensus 83 ~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~~~ 128 (128)
T 1pdn_C 83 RIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRD 128 (128)
T ss_dssp HHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHhcC
Confidence 9999999999999999999998778731111259999999998753
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.89 E-value=1.6e-22 Score=164.58 Aligned_cols=132 Identities=69% Similarity=1.111 Sum_probs=109.5
Q ss_pred cCCCCCCcchhhccCCcccCCCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCC
Q psy15598 25 TDASGQQYGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPR 104 (258)
Q Consensus 25 ~~~~~~~~~~~nq~~~~~~~gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPr 104 (258)
..+.-++.+++|++||+|.|++.|+.++|.+||.++.+|++.++||+.||||++||++|+++|++.|.+.+++++|++++
T Consensus 10 ~~~~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~ 89 (149)
T 1k78_A 10 PRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPK 89 (149)
T ss_dssp ---------CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCS
T ss_pred CccccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCC
Confidence 44556777999999999999999999999999999999999999999999999999999999999998877776664478
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhc-----CCCCCCCCCCHHHHHHHHHhccCCC
Q psy15598 105 VTTPKVVSYIKELKQKDPGIFAWEIRDRLLSD-----GVCDKFNVPSVSSISRILRNKIGSS 161 (258)
Q Consensus 105 klT~e~~~~I~~lv~~nP~ita~EIr~~L~~~-----Gv~v~~~~pS~STI~RiLrr~~~~~ 161 (258)
+++++..+.|.+++.++|.+++++|++.|.+. |+. +|.+||+|+|++....+
T Consensus 90 ~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~-----~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 90 VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV-----PSVSSINRIIRTKVQQP 146 (149)
T ss_dssp SSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTS-----CCHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCC-----cCHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999765 454 59999999999877643
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=155.70 Aligned_cols=139 Identities=65% Similarity=1.081 Sum_probs=118.2
Q ss_pred CCcchhhccCCcccCCCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHH
Q psy15598 30 QQYGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPK 109 (258)
Q Consensus 30 ~~~~~~nq~~~~~~~gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e 109 (258)
.+...++++|+++.|++.|+.++|.+|+.++.+|++.++||+.||||++||++|+++|++.|.+.+++++|.++++++++
T Consensus 8 ~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~ 87 (159)
T 2k27_A 8 SGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPK 87 (159)
T ss_dssp CSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTT
T ss_pred hcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHH
Confidence 34467899999999999999999999999999999999999999999999999999999999887777666447788888
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCCCCCCCC
Q psy15598 110 VVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIVQHHHH 168 (258)
Q Consensus 110 ~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~~~~~~~ 168 (258)
..+.|.++++++|.+++++|++.|.+.+++.....+|.+||+|+|++......+..+.+
T Consensus 88 ~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~ 146 (159)
T 2k27_A 88 VVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDS 146 (159)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCC
T ss_pred HHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccC
Confidence 89999999999999999999999986553111112699999999999888766665543
No 4
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=99.68 E-value=5.4e-16 Score=123.15 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=89.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHhCCCC
Q psy15598 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDPGI 124 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~nP~i 124 (258)
++.++.+.|.+|+.++.+|++.++||+.||||++||++|+++|.+.|.... .| +|++++++.+..|.++ ..+|.+
T Consensus 4 ~~~~s~~~r~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~---~g-r~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKR---AP-RRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCC---CC-CCCSSCHHHHHHHHHH-HHHCCC
T ss_pred cccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCC---CC-CCCcCCHHHHHHHHHH-HhCCCC
Confidence 457999999999999999999999999999999999999999998886532 45 7888999988888888 677899
Q ss_pred CHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccC
Q psy15598 125 FAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIG 159 (258)
Q Consensus 125 ta~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~ 159 (258)
++.+|++.| |+.+ |.+||+|+|++.+.
T Consensus 79 s~~~i~~~l---g~~~-----s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 79 TARDIRNEL---QLSA-----SKRTILNVIKRSGV 105 (141)
T ss_dssp CHHHHHHHT---TCCS-----CHHHHHHHHHHTC-
T ss_pred CHHHHHHHH---CCCc-----cHHHHHHHHHHCCC
Confidence 999998877 6654 99999999999876
No 5
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=99.44 E-value=6.7e-13 Score=119.75 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHhC-------CCHHHHHHHHHHhhhhC--CcccCCCCCCCCCCCCHHHHHHHH
Q psy15598 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLR-------VSHGCVSKILARYHETG--SILPGAIGGSKPRVTTPKVVSYIK 115 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G~S~~eIAr~LG-------VSrsTVsRwikRyrEtG--sl~pk~rgG~RPrklT~e~~~~I~ 115 (258)
-.+...++|.+|+.++.+|++.++||+.|+ ||++||++|+++|++ | .+.+++++| ||+++++ +.|.
T Consensus 4 ~~~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~ 78 (345)
T 3hot_A 4 FVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQ 78 (345)
T ss_dssp -CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-CCccccCCCCCC-CCCcccH---HHHH
Confidence 345678999999999999999999999977 999999999999997 6 467888888 8888876 5566
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 116 ELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 116 ~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
++++.+|..+..+|++.| + +|.+||+|+|++.+..
T Consensus 79 ~~v~~~~~~t~~~ia~~l---~-------vs~~tV~r~L~~~g~~ 113 (345)
T 3hot_A 79 ALLDEDDAQTQKQLAEQL---E-------VSQQAVSNRLREMGKI 113 (345)
T ss_dssp HHHHHCSCCCHHHHHHHT---T-------SCHHHHHHHHHHTTCE
T ss_pred HHHHhCccchHHHHHHHH---C-------CCHHHHHHHHHHhCCe
Confidence 778899999999999887 2 4999999999998775
No 6
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.91 E-value=2.1e-09 Score=70.02 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCC
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGS 92 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGs 92 (258)
+.++.+.|..|+.++.+|++..+||+.||||++||++|+++|++.|.
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g~ 50 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHHhcCC
Confidence 45899999999999999999999999999999999999999987763
No 7
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=98.67 E-value=4.1e-08 Score=74.40 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCC
Q psy15598 46 RPLPNSVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGS 92 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGs 92 (258)
+.||.++|..+|.++. . |.+..+||+.||||++||++|+++|.+.|.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 5799999999999985 5 899999999999999999999999997764
No 8
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=98.65 E-value=5e-07 Score=71.28 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=75.8
Q ss_pred CCCCCHHHHHHHHHHH-HcCCCH-HHHHHHhCCCHHHHHHHHHHhhh-------hCCcccCCCCCCCCCCCCHHHHHHHH
Q psy15598 45 GRPLPNSVRMRIVELA-QLGIRP-CDISRQLRVSHGCVSKILARYHE-------TGSILPGAIGGSKPRVTTPKVVSYIK 115 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~-~~G~S~-~eIAr~LGVSrsTVsRwikRyrE-------tGsl~pk~rgG~RPrklT~e~~~~I~ 115 (258)
.+.|+.++|.+||.++ +.|.+. ++||+.|||+++||++|++.+.. .+...+.. .+ ......++.++.|.
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~-kr-~r~~~~~~~E~~L~ 82 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCR-KT-NKLSPYDKLEGLLI 82 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTC-CC-CCCCTTHHHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhh-cc-cCCCCCHHHHHHHH
Confidence 4579999999999998 677665 49999999999999999998765 34322221 12 22446677888888
Q ss_pred HHHHh----CCCCCHHHHHHHH---H-hcCCCCCCCCCCHHHHHHHHHhcc
Q psy15598 116 ELKQK----DPGIFAWEIRDRL---L-SDGVCDKFNVPSVSSISRILRNKI 158 (258)
Q Consensus 116 ~lv~~----nP~ita~EIr~~L---~-~~Gv~v~~~~pS~STI~RiLrr~~ 158 (258)
.++.+ +-.++...|++.. . ..|+. +-.+|..-+.++.++++
T Consensus 83 ~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~--~f~~S~gWl~~F~~Rh~ 131 (131)
T 1hlv_A 83 AWFQQIRAAGLPVKGIILKEKALRIAEELGMD--DFTASNGWLDRFRRRRS 131 (131)
T ss_dssp HHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCT--TCCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcC
Confidence 88763 2235655554333 2 23553 12369999999998864
No 9
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=98.55 E-value=1.4e-07 Score=70.81 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCC
Q psy15598 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGS 92 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGs 92 (258)
.+.|+.+++..+|.++..|.+..+||+.||||++||++|+++|.+.+.
T Consensus 20 ~~~ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~ 67 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRF 67 (87)
T ss_dssp CSSCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 458999999999999988999999999999999999999999987553
No 10
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=98.48 E-value=1.8e-07 Score=65.47 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCC----HHHHHHHhCCCHHHHHHHHHHhhhhC
Q psy15598 45 GRPLPNSVRMRIVELAQLGIR----PCDISRQLRVSHGCVSKILARYHETG 91 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G~S----~~eIAr~LGVSrsTVsRwikRyrEtG 91 (258)
.+.||.++|.+|+++++.|.+ ..+||+.|||+.+||++|+++|.+.+
T Consensus 3 r~~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~ 53 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLR 53 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHH
T ss_pred CCcCCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 357999999999887888999 99999999999999999999998754
No 11
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=98.35 E-value=4e-07 Score=70.03 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHH-cC-------CCHHHHHHHhCCCHHHHHHHHHHhhhhCC
Q psy15598 44 NGRPLPNSVRMRIVELAQ-LG-------IRPCDISRQLRVSHGCVSKILARYHETGS 92 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~-~G-------~S~~eIAr~LGVSrsTVsRwikRyrEtGs 92 (258)
+.+.||.++|.++|.++. .| .+..+||+.||||.+||++|+++|.+.|.
T Consensus 3 ~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 3 KNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 456799999999999884 44 89999999999999999999999998765
No 12
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=98.25 E-value=4.9e-07 Score=59.45 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++.+.+..|+.++.+|.+..+||+.||||++||++|++++.
T Consensus 5 ~~~~~~~~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 466777788999988999999999999999999999998753
No 13
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=98.21 E-value=8.6e-06 Score=77.92 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=67.1
Q ss_pred HHHHHHHH----HHcCCCH----HHHHHHhCCCHHHHHHHHHHhhhhCC------cccCCCCC---CCCCCCCHHHHHHH
Q psy15598 52 VRMRIVEL----AQLGIRP----CDISRQLRVSHGCVSKILARYHETGS------ILPGAIGG---SKPRVTTPKVVSYI 114 (258)
Q Consensus 52 lR~RIV~L----~~~G~S~----~eIAr~LGVSrsTVsRwikRyrEtGs------l~pk~rgG---~RPrklT~e~~~~I 114 (258)
.|..||.. ...|.+. .++|+.+|||++|++||+++|+..|. +.|+..+. .+...++++..+.|
T Consensus 33 ~r~~~i~~v~~l~~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~y~~~~~~~gl~~L~~~~~~~~~~~~~~~~~~~~~~~i 112 (529)
T 4fcy_A 33 KWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFL 112 (529)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSCGGGHHHHHC------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcccCceecccCCCCCCCCCCcCcCCHHHHHHH
Confidence 44455554 3467764 45799999999999999999976542 34443221 12344678888888
Q ss_pred HHHHHhCCCCCHHH----HHHHHHhcCCCCCCCCCCHHHHHHHHHhcc
Q psy15598 115 KELKQKDPGIFAWE----IRDRLLSDGVCDKFNVPSVSSISRILRNKI 158 (258)
Q Consensus 115 ~~lv~~nP~ita~E----Ir~~L~~~Gv~v~~~~pS~STI~RiLrr~~ 158 (258)
.+.....+..+... +...+.+.|+.+ ||.+||+|+|++..
T Consensus 113 ~~~yl~~~~~s~~~~~~~~~~~~~~~g~~~----PS~~tv~r~l~~~~ 156 (529)
T 4fcy_A 113 IADYLRPEKPAFRKCYERLELAAREHGWSI----PSRATAFRRIQQLD 156 (529)
T ss_dssp HHHHTSTTCCCHHHHHHHHHHHHHHHTCCC----CCHHHHHHHHHHHC
T ss_pred HHHHhCcCCCCHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHhcC
Confidence 87766555556544 445555678876 89999999998743
No 14
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=97.97 E-value=5.6e-06 Score=56.18 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=34.3
Q ss_pred CC--HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 48 LP--NSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 48 ~S--~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
++ .+....|+.++.+|++..+||+.||||++||++|+++
T Consensus 14 l~~~~~~~~~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 14 VESEDDLVSVAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp ECSHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 56 6777788888889999999999999999999999864
No 15
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=97.68 E-value=1.9e-05 Score=62.59 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=79.8
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEI 129 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~nP~ita~EI 129 (258)
+++.+|+..+. .+.++.++|..|+++..++..|++...+.|.+.+...+.--......+..+.|.+++..++.+++.++
T Consensus 7 ~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~ 86 (121)
T 2pjp_A 7 AIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADF 86 (121)
T ss_dssp HHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHH
Confidence 57788888886 67899999999999999999999999999987655433212233446667788888888999999999
Q ss_pred HHHHHhcCCCCCCCCCCHH---HHHHHHHhccCC
Q psy15598 130 RDRLLSDGVCDKFNVPSVS---SISRILRNKIGS 160 (258)
Q Consensus 130 r~~L~~~Gv~v~~~~pS~S---TI~RiLrr~~~~ 160 (258)
++.| | +|+. +|-.+|.+.+.-
T Consensus 87 Rd~l---g-------~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 87 RDRL---G-------VGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp HHHH---T-------SCHHHHHHHHHHHHHHTSE
T ss_pred HHHH---C-------CcHHHHHHHHHHHhhcCCe
Confidence 9999 4 3888 888888877654
No 16
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=97.65 E-value=8.9e-05 Score=57.48 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 44 NGRPLPNSVRMRIVELAQLG-IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
.-+..+.+++.+||..+..| .|.+++|+.++||.++|++|.+.|.+.|..
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~ 79 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEK 79 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHH
Confidence 44569999999999998765 799999999999999999999999988853
No 17
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=97.47 E-value=0.00069 Score=55.06 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=74.5
Q ss_pred CCCCCCHHHHHHHHHHH-H--cCCCHHHHHH----Hh--CCCHHHHHHHHHHhhhhCCc-c--cCCCCCCCCCCCCHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-Q--LGIRPCDISR----QL--RVSHGCVSKILARYHETGSI-L--PGAIGGSKPRVTTPKVV 111 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-~--~G~S~~eIAr----~L--GVSrsTVsRwikRyrEtGsl-~--pk~rgG~RPrklT~e~~ 111 (258)
.-+.|+.+.|.+|++.+ + .+++..++|+ .| +||++||++|++.-.+--.. . +..+.. +.....++.+
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~~~~~~~~~kr-~r~~~~~~le 86 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKR-NRPPKYPLLE 86 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTTSCSSSSSSSC-CCCCSCHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhhcccccccccC-CCCCCCHHHH
Confidence 44579999999999999 4 3589999999 99 99999999999986552211 1 111111 2234568888
Q ss_pred HHHHHHHHh---CCCCCHHHHHHHHHh----c----CCCCCCCCCCHHHHHHHHHhccC
Q psy15598 112 SYIKELKQK---DPGIFAWEIRDRLLS----D----GVCDKFNVPSVSSISRILRNKIG 159 (258)
Q Consensus 112 ~~I~~lv~~---nP~ita~EIr~~L~~----~----Gv~v~~~~pS~STI~RiLrr~~~ 159 (258)
+.+..++.+ +..++-..|++.... . |.. .-..|..-+.++.++++.
T Consensus 87 ~~L~~Wi~~~~~~~~it~~~I~~kA~~i~~~l~~~~~~~--~f~~S~GWL~~Fk~Rh~i 143 (144)
T 1iuf_A 87 AALFEWQVQQGDDATLSGETIKRAAAILWHKIPEYQDQP--VPNFSNGWLEGFRKRHIL 143 (144)
T ss_dssp HHHHHHHHHTCTTCCCSSHHHHHHHHHHHHHCSSSSCCC--CCSCCSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCCC--CCCcCHHHHHHHHHHcCC
Confidence 888888876 334554444333321 1 211 123588888888887653
No 18
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=97.23 E-value=0.00036 Score=58.71 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHH-c--------CCCHHHHHHHhCCCHHHHHHHHHHh
Q psy15598 45 GRPLPNSVRMRIVELAQ-L--------GIRPCDISRQLRVSHGCVSKILARY 87 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~-~--------G~S~~eIAr~LGVSrsTVsRwikRy 87 (258)
-|.|+.+++..++.+.. . |.+..+||+.||||++|+++|++.+
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~ 72 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKN 72 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 56799999999987753 2 6899999999999999999999964
No 19
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=97.23 E-value=0.0008 Score=52.86 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 52 VRMRIVELAQLG-IRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 52 lR~RIV~L~~~G-~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.|..|+.+..+| ++.++||+.+|||++||+|+ +|..
T Consensus 46 ~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L 82 (101)
T 1jhg_A 46 TRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSL 82 (101)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHH
Confidence 346777777788 99999999999999999999 7765
No 20
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.21 E-value=0.00025 Score=53.08 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~l 117 (258)
++...|.+|+.+..+ +++..+||+.+|+|++||++-++...+.|-+.....+...--.++++....+.+.
T Consensus 20 l~~~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~ 90 (98)
T 3jth_A 20 MANERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKL 90 (98)
T ss_dssp HCSHHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHH
Confidence 566789999998765 4799999999999999999999999999987544333212223444444444443
No 21
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.17 E-value=0.00026 Score=52.28 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQL--GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~--G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv 118 (258)
++...|.+|+.+..+ +.+..+||+.||+|++||++.+++..+.|-+.-...++..--.++++....+.+.+
T Consensus 21 l~~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp HCSHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred hCChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 455788889988754 48999999999999999999999999999875332222111234554444444443
No 22
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.00089 Score=46.53 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|.-+...+.+|++..+||+.||||.+||++++.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp SSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4777777555555679999999999999999999999999764
No 23
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.12 E-value=0.00049 Score=49.31 Aligned_cols=45 Identities=9% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHHHHHHHHH-c--CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 51 SVRMRIVELAQ-L--GIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 51 dlR~RIV~L~~-~--G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
+.|.+|++++. + .++..+||+.||||++||++.++..++.|.|..
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 46778988875 3 379999999999999999999999999998753
No 24
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=97.10 E-value=0.00042 Score=56.33 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCC-CHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRV-SHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGV-SrsTVsRwikRyrE 89 (258)
.|+.++-.+|.+++..|.+.++||+.+|| |++||++|+++..+
T Consensus 12 k~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~e 55 (140)
T 4dyq_A 12 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHED 55 (140)
T ss_dssp SCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHH
T ss_pred CCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHH
Confidence 58999999999999999999999999999 99999999999754
No 25
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.04 E-value=0.00049 Score=51.92 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC
Q psy15598 47 PLPNSVRMRIVELAQLG-IRPCDISRQLRVSHGCVSKILARYHETGSILPGA 97 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~ 97 (258)
.++...|.+|+.+..+| ++..+||+.+|+|++||++-+++..+.|-|....
T Consensus 19 ~l~~~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HHCSHHHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEEC
T ss_pred HcCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 35678899999998765 7999999999999999999999999999875433
No 26
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.97 E-value=0.00086 Score=50.87 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC
Q psy15598 49 PNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPG 96 (258)
Q Consensus 49 S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk 96 (258)
....+.+|+.++. +|.+..+||+.||||+++|++-+.+..+.|.|.-.
T Consensus 15 ~~~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp SHHHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 3478899999875 68999999999999999999999999999988543
No 27
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.97 E-value=0.00068 Score=51.47 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv 118 (258)
.++...|.+|+.+... +.+.++||+.||+|++||++.+++..+.|-|.....++..--.++++....+...+
T Consensus 17 ~l~~~~r~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~ 89 (114)
T 2oqg_A 17 ALSDETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTL 89 (114)
T ss_dssp HTTCHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHH
Confidence 3556788899988754 58999999999999999999999999999875332221111235555444444443
No 28
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.96 E-value=0.00093 Score=50.13 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHH-cC----CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVELAQ-LG----IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G----~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++.+...+|++++. .| ++..+||+.||||++||.+.+.+.++.|.|.
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45677788888875 45 7999999999999999999999999999874
No 29
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=96.96 E-value=0.0015 Score=48.67 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-++..+-+|++..+||+.||||.+||.+++.|-+
T Consensus 37 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 367777766666678999999999999999999999998865
No 30
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.96 E-value=0.00018 Score=55.43 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC
Q psy15598 48 LPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILPG 96 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk 96 (258)
++...|.+|+.++.+ +++.++||+.||||++||++.+++.++.|-|...
T Consensus 22 l~~~~r~~IL~~L~~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 22 LANGRRLQILDLLAQGERAVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp HTTSTTHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hCCHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 445667888888764 4799999999999999999999999999987543
No 31
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.91 E-value=0.0019 Score=47.00 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=37.2
Q ss_pred HHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 53 RMRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 53 R~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
|.+|+.++. ..++.++||+.||||++||++.+++..+.|-+.
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 667888765 348999999999999999999999999999875
No 32
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=96.89 E-value=0.0013 Score=44.88 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
..|+.++.+|++.++||+.||||.+||+..+++-.+
T Consensus 4 ~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 4 RQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467777889999999999999999999999998763
No 33
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.88 E-value=0.00039 Score=54.23 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELAQLG-IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv 118 (258)
.++...|.+|+.+..+| ++..+||+.||||++||++-++...+.|-|.....+..+--.++++....+.+++
T Consensus 14 al~~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 14 ALADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HHTSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 46778999999998754 7999999999999999999999999999885443332122335555555554443
No 34
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=96.86 E-value=0.0022 Score=49.43 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
...++...| +|+.++.+|++.++||+.|+||.+||+..+++-.+
T Consensus 32 ~~~Lt~re~-~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKES-EVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHH-HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456888877 56667779999999999999999999999998763
No 35
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=96.84 E-value=0.0013 Score=51.77 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCC
Q psy15598 45 GRPLPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGS 92 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGs 92 (258)
-|.-....+..||..+.. ++|..|+|+.|+||.++|.+|.+.|++.|.
T Consensus 31 ~rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~ 79 (101)
T 2oa4_A 31 TRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGK 79 (101)
T ss_dssp CSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 334444568889998875 589999999999999999999999998885
No 36
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=96.83 E-value=0.0026 Score=45.33 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|.-+...+- +|++..+||+.+|||.+||++++.+-.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 477888866666565 8999999999999999999999888653
No 37
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=96.82 E-value=0.0021 Score=45.22 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELA----QLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~----~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|.-+...+ .+|++..+||+.+|||.+||..++.+-.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36777775555555 48999999999999999999999998764
No 38
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.73 E-value=0.0013 Score=48.62 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHH-cC----CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVELAQ-LG----IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G----~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++.+...+|+.++. .| ++..+||+.||||++||.+.+.+.++.|.|.
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34566678887764 34 7999999999999999999999999999873
No 39
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.73 E-value=0.0015 Score=49.81 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 47 PLPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
.++...|.+|+.++.+ +++..+||+.+|+|++||++.+++.++.|-+.-
T Consensus 22 ~l~~~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HTCSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3567789999988754 579999999999999999999999999998753
No 40
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=96.71 E-value=0.0027 Score=44.47 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
..++...+ .|+.++.+|++..+||+.||||.+||++++++-.
T Consensus 10 ~~L~~~e~-~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKRER-EVFELLVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHH-HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34666666 5566678899999999999999999999999965
No 41
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=96.71 E-value=0.0032 Score=49.54 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-+...+.+|++..+||+.+|||.+||++++.+-+
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478888876666678999999999999999999999999976
No 42
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=96.70 E-value=0.0026 Score=46.75 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...| +|+.++.+|++.++||+.||||.+||++.+++-++
T Consensus 21 ~Lt~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRER-DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHH-HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677666 55556779999999999999999999999998763
No 43
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=96.68 E-value=0.01 Score=46.99 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHcC-------C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHH
Q psy15598 45 GRPLPNSVRMRIVELAQLG-------I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIK 115 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G-------~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~ 115 (258)
..++...+...|...+..| + |.+++|++||||+.||++.+++..+.|-+...++.|. .+.. ......+.
T Consensus 11 ~~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~--~V~~~~~~~~~~~ 88 (125)
T 3neu_A 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS--FVTSDKALFDQLK 88 (125)
T ss_dssp SSCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE--EECCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEE--EEecCchhhHHHH
Confidence 3455666667777776654 2 6999999999999999999999999998865554441 1111 22122111
Q ss_pred HH-HHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhc
Q psy15598 116 EL-KQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNK 157 (258)
Q Consensus 116 ~l-v~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~ 157 (258)
.. +.. .+..+...+...|+ +...|.+.+...
T Consensus 89 ~~~~~~----~le~~~~~~~~~g~-------~~~ei~~l~~~~ 120 (125)
T 3neu_A 89 KELADA----ITERFLEEAKSIGL-------DDQTAIELLIKR 120 (125)
T ss_dssp HHHHHH----HHHHHHHHHHHTTC-------CHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHcCC-------CHHHHHHHHHHH
Confidence 11 111 23344555555565 667777777654
No 44
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.68 E-value=0.0022 Score=47.87 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++...|.+|+.+++.+++..+||+.|+||++||++.++...+.|-+.
T Consensus 28 l~~~~r~~Il~~L~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 28 VTNPVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp HSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hCCHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45677888998884458999999999999999999999999999874
No 45
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.67 E-value=0.0015 Score=51.34 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC
Q psy15598 48 LPNSVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSILPG 96 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk 96 (258)
++...|.+|+.++. . +++.++||+.||+|++||++.++..++.|-+.-.
T Consensus 39 l~~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 39 IADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHSHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 45677889998875 4 5899999999999999999999999999987544
No 46
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=96.66 E-value=0.00028 Score=59.36 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHET 90 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEt 90 (258)
.++.+...+|++++.+|++..+||+.||||++||+||+++..+.
T Consensus 142 ~~~~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 142 KLTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp --------------------------------------------
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 35666777899999999999999999999999999999987643
No 47
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=96.62 E-value=0.0042 Score=45.96 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|.-|+..+- +|+|..+||+.||||.+||+.++.|-..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 478888866666665 8999999999999999999999998764
No 48
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.60 E-value=0.00055 Score=56.38 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15598 46 RPLPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQK 120 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~ 120 (258)
+.++...|.+|+.++.. .++..+||+.||+|++||++-++..++.|-|...+.+..+--.++++....+.+.+..
T Consensus 53 ~aL~~p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~ 128 (151)
T 3f6v_A 53 EVAAEPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDS 128 (151)
T ss_dssp HHHTSHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence 34677899999999865 5899999999999999999999999999988644333212234677766666666543
No 49
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=96.55 E-value=0.0035 Score=50.61 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHh
Q psy15598 49 PNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 87 (258)
Q Consensus 49 S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRy 87 (258)
+...|.+|+.+..+|++.++||+.+|+|..||.|..+..
T Consensus 61 aLs~R~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSL 99 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 345679999999999999999999999999999955544
No 50
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=96.53 E-value=0.0035 Score=49.77 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 50 NSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 50 ~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
...|.+|+.+..+|++.++|++.+|+|.+||.|..+-.+
T Consensus 45 laqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r~L~ 83 (107)
T 3frw_A 45 LSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNRSLN 83 (107)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHH
Confidence 457899999999999999999999999999999887765
No 51
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=96.52 E-value=0.0045 Score=53.58 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=39.6
Q ss_pred CCCCCCH-HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh-hhC
Q psy15598 44 NGRPLPN-SVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH-ETG 91 (258)
Q Consensus 44 ~gR~~S~-dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr-EtG 91 (258)
..|++|. ++-.++..++..|++..+||+.||||+.+|+||+++.+ +.|
T Consensus 4 Take~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~ 53 (192)
T 1zx4_A 4 TALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEE 53 (192)
T ss_dssp -CCSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHH
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHhccchh
Confidence 3566676 45577778888999999999999999999999999987 444
No 52
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.49 E-value=0.001 Score=52.00 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC
Q psy15598 48 LPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILPG 96 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk 96 (258)
++...|.+|+.++.+ ..+..+||+.||+|++||++.+++.++.|-+...
T Consensus 18 L~~~~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 18 LADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HSSHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 456789999998765 4899999999999999999999999999987543
No 53
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.43 E-value=0.0058 Score=47.84 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHHHhhhh
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKILARYHET 90 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwikRyrEt 90 (258)
.+|..++ .+|++..+||+.||||+.+|+|.+++.++.
T Consensus 24 ~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 24 IEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566665 589999999999999999999999999865
No 54
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=96.42 E-value=0.0048 Score=48.33 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-++ ++-+|++..+||+.||||.+||++++.|-+
T Consensus 109 ~L~~~~r~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HSCHHHHHHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47788887666 777999999999999999999999998865
No 55
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=96.41 E-value=0.011 Score=45.68 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=48.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
+++..++|+.+|||.+|++.|-+. |.+.|..+..+.-+..++++...|..... .+-.+++.+|+..|.
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~----Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI----GLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLD 69 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH----TSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC----CCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 468899999999999999988654 87766543212347788877665554432 234788889988774
No 56
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=96.40 E-value=0.0074 Score=45.46 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|. |+.++.+|++.++||+.||||.+||+..+++-++
T Consensus 27 ~Lt~~e~~-vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERT-LLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHH-HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47777774 5555689999999999999999999999988764
No 57
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=96.38 E-value=0.0057 Score=43.52 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
++...| .|+.++.+|++..+||+.||||.+||++++.+-++
T Consensus 17 L~~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERER-QVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHH-HHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455555 45555678999999999999999999999998764
No 58
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.38 E-value=0.002 Score=47.36 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~lv 118 (258)
.++...|.+|+.... .+++.++||+.+++|++||++.+++..+.|-+.-.. ..+ ..--.+|++-.+.+.++.
T Consensus 12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 345567888888653 468999999999999999999999999999874211 112 112236776555554443
No 59
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=96.37 E-value=0.0058 Score=47.86 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-+...+.+|++..+||+.||||.+||++++.|-+
T Consensus 25 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 477777766666667999999999999999999999999875
No 60
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=96.34 E-value=0.0081 Score=44.03 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=46.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCC-CCCCCCCCHHHHHHHHHHHH-h-CCCCCHHHHHHHHHh
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIG-GSKPRVTTPKVVSYIKELKQ-K-DPGIFAWEIRDRLLS 135 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rg-G~RPrklT~e~~~~I~~lv~-~-nP~ita~EIr~~L~~ 135 (258)
+++.++|+.+|||.+|++.|.++ .|.+.|.... + .-+..++++...|..++. . +-.+++.+|++.|..
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~---~gl~~p~r~~~~-g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~ 76 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR---YGFPRPLRSEGN-NYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKT 76 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH---TCCSCCBSSSCS-SSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh---CCCCCCcCCCCC-CeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 57899999999999999988665 2555554332 3 456788877765544432 1 346778888777754
No 61
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.34 E-value=0.002 Score=48.82 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=39.7
Q ss_pred CCCHHHHHHHH-HHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 47 PLPNSVRMRIV-ELAQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 47 ~~S~dlR~RIV-~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+++..|.+|+ .+.. .+++.++||+.+|+|++||++-++..++. -+.
T Consensus 23 aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~ 71 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLK 71 (99)
T ss_dssp HHCSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBE
T ss_pred HhCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhh
Confidence 35678899999 4554 45899999999999999999999999988 654
No 62
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=96.30 E-value=0.013 Score=40.09 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 111 VSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 111 ~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
...|..++..+..+++.||.+.|.+.|..+ |.+||+|.|+..+..
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~v-----s~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKV-----TQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-----CHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCc-----CHHHHHHHHHHcCCE
Confidence 345667777888899999999999888775 999999999966543
No 63
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.29 E-value=0.015 Score=36.66 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcc
Q psy15598 102 KPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKI 158 (258)
Q Consensus 102 RPrklT~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~ 158 (258)
||..++++....|..+..+ .++..+|++.|. +|.+||+++|++..
T Consensus 2 R~~~l~~~~~~~i~~~~~~--g~s~~~IA~~lg----------is~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 2 RGSALSDTERAQLDVMKLL--NVSLHEMSRKIS----------RSRHCIRVYLKDPV 46 (51)
T ss_dssp CSCCCCHHHHHHHHHHHHT--TCCHHHHHHHHT----------CCHHHHHHHHHCST
T ss_pred CCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHC----------cCHHHHHHHHhhHH
Confidence 7788898888788877654 578999988873 49999999998654
No 64
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=96.26 E-value=0.0076 Score=42.32 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
-.|..|..+++ .+...+++|+.||||++|+++++++|.
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 35666666665 577899999999999999999999984
No 65
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=96.23 E-value=0.032 Score=44.89 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=47.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
+++.++|+.+|||..|++.|-+ .|.+.|..+..+.-|..++++...|..... .+-.+++.+|++.|.
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~----~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~ 68 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE----KGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVN 68 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH----TTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH----CCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5788999999999999987754 577765433222457788877665554432 234789999998886
No 66
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=96.22 E-value=0.0047 Score=45.86 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|. |+.++.+|++..+||+.||||.+||+.++++-++
T Consensus 29 ~Lt~~e~~-vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 29 MLTEREME-ILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp GCCSHHHH-HHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36666664 5555689999999999999999999999998764
No 67
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=96.19 E-value=0.0093 Score=44.89 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...+ .|+.++.+|++..+||+.|+||.+||...+++-.+
T Consensus 29 ~Lt~rE~-~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 29 VLTPREC-LILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp CCCHHHH-HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4676666 46677779999999999999999999999988753
No 68
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=96.14 E-value=0.0081 Score=42.11 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
+....|..|..+++.....+++|+.||||++|+++++++|.
T Consensus 18 l~~~Er~~I~~aL~~~gn~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEYPSTRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp CSHHHHHHHHHHHHHSCSHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 55667777777776446889999999999999999999984
No 69
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=96.12 E-value=0.0067 Score=44.70 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 47 PLPNSVRMRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.++...+..++.+.. .+.+..+||+.||||++||++.+++..+.|-+.
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 456665555656654 468999999999999999999999999999774
No 70
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=96.12 E-value=0.0059 Score=46.88 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 49 PNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 49 S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
....|.+|+.++.+ +.+.++||+.|+||++||++.+++..+.|.+.
T Consensus 30 ~~~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 30 ATPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34677888887765 79999999999999999999999999999764
No 71
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=96.11 E-value=0.048 Score=44.38 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=48.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
+++.++|+.+|||..|++.|-+. |.+.|..+..+.-|..++++...|..++. ..-.+++.+|++.|.
T Consensus 3 ~~I~e~A~~~gvs~~tLR~Ye~~----GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYYERI----GLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHH----TSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHC----CCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68899999999999999877554 77877334322457788877665544432 334889999988875
No 72
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=96.10 E-value=0.00094 Score=56.29 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
++.+...+|++++.+|++..+||+.||||++||+||++++++
T Consensus 143 ~~~~~v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 143 LTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 445556688889889999999999999999999999998754
No 73
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.09 E-value=0.0037 Score=49.33 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 48 LPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++...|.+|+.+..+ +++..+||+.||+|++||++.+++.++.|-+.-
T Consensus 43 L~~~~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 43 LADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HCCHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 556678889988765 589999999999999999999999999998753
No 74
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=96.07 E-value=0.0053 Score=51.05 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..|.+++.+|++..+||+.||||++||++|+++
T Consensus 149 ~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 149 DAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 468888899999999999999999999999975
No 75
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=96.05 E-value=0.0097 Score=48.32 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
++...|.-++..+-+|+|..+||+.||||.+||.+++.|-++
T Consensus 141 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 141 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677777655555679999999999999999999999998753
No 76
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.03 E-value=0.0038 Score=40.32 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcc
Q psy15598 102 KPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKI 158 (258)
Q Consensus 102 RPrklT~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~ 158 (258)
||+.++++....|.++..+. .+..+|++.| | +|.+||+|+|++..
T Consensus 2 Rp~~~~~~~~~~i~~l~~~g--~s~~~ia~~l---g-------vs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 2 RPRAINKHEQEQISRLLEKG--HPRQQLAIIF---G-------IGVSTLYRYFPASS 46 (52)
T ss_dssp CCCSSCTTHHHHHHHHHHTT--CCHHHHHHTT---S-------CCHHHHHHHSCTTC
T ss_pred CCCCCCHHHHHHHHHHHHcC--CCHHHHHHHH---C-------CCHHHHHHHHHHcc
Confidence 77788877777888876653 7888887665 4 49999999998654
No 77
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.01 E-value=0.0044 Score=47.16 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHHHHHHHH-HcC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC
Q psy15598 51 SVRMRIVELA-QLG--IRPCDISRQLRVSHGCVSKILARYHETGSILPG 96 (258)
Q Consensus 51 dlR~RIV~L~-~~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk 96 (258)
+.+.+|+... ..| ++.++||+.||||++||++-+++..+.|-+.-.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4677888775 444 799999999999999999999999999987544
No 78
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=95.97 E-value=0.012 Score=48.93 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCCCCC
Q psy15598 109 KVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIVQH 165 (258)
Q Consensus 109 e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~~~~ 165 (258)
+-.+.|++++.++...+..||++.|++.|+.+ |.+||+|-|++++..|....
T Consensus 5 ~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~V-----tqaTisRDL~eL~~vKv~~~ 56 (149)
T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNV-----TQATVSRDIKEMQLVKVPMA 56 (149)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-----CHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHcCCCc-----CHHHHHHHHHHcCCeEEECC
Confidence 34678999999999999999999999999986 99999999999999987653
No 79
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=95.97 E-value=0.024 Score=47.74 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred CCCCCCH---HHHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy15598 44 NGRPLPN---SVRMRIVELAQLG-IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ 119 (258)
Q Consensus 44 ~gR~~S~---dlR~RIV~L~~~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~ 119 (258)
|++..+. +.|.+|+++..+| .+..+||+.||+|.+.|.-.+.-...+|-+..-++|..+--.+.+. +++. .+.
T Consensus 1 MPrk~Td~v~erk~~ILE~Lk~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s--~y~~-kV~ 77 (165)
T 2vxz_A 1 MPIGHSREVLVRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD--QYRQ-LVD 77 (165)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH--HHHH-HHH
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH--HHHH-HHH
Confidence 4455555 5678899988877 6999999999999999999999999999875444443222334433 2322 111
Q ss_pred hCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHh
Q psy15598 120 KDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRN 156 (258)
Q Consensus 120 ~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr 156 (258)
. ..+|+-..|.+.|+.. ++.+-..|.+..
T Consensus 78 d----ilrel~~~l~s~gvk~----i~p~~l~~li~~ 106 (165)
T 2vxz_A 78 G----MIREVERLVTTNKLKF----ISPPRLHDLIIK 106 (165)
T ss_dssp H----HHHHHHHHHHHTTCSE----ECHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCee----eCcHHHHHHHHh
Confidence 1 2345555566778876 788877777654
No 80
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=95.95 E-value=0.0085 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
+..+-+.+|++++. .+.+..+||+.+|||.+||+|+++.
T Consensus 4 ~~~~R~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 4 YIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp THHHHHHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 44566677888775 5899999999999999999999864
No 81
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=95.95 E-value=0.0075 Score=48.25 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHcCC--------CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 46 RPLPNSVRMRIVELAQLGI--------RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~--------S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
.++...+...|...+..|. +.+++|++||||++||++-+++..+.|-+...++.|
T Consensus 3 ~~~~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G 65 (129)
T 2ek5_A 3 VPLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIG 65 (129)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCE
Confidence 3444555555666655442 899999999999999999999999999886555444
No 82
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=95.92 E-value=0.0074 Score=47.89 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=64.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCC--------CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELAQLGI--------RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIK 115 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G~--------S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~ 115 (258)
...++...+-..|...+..|. +.+++|+.||||+.||++-+++..+.|-+...++.| ....+.....+.
T Consensus 8 ~~~~~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G---~~V~~~~~~~~~ 84 (126)
T 3ic7_A 8 ESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIG---FFVASGAKMLIH 84 (126)
T ss_dssp ----CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTE---EEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCCc---cEEccCcHHHHH
Confidence 345566666667777665542 788999999999999999999999999886555444 222333344444
Q ss_pred HHHHhC-CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHh
Q psy15598 116 ELKQKD-PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRN 156 (258)
Q Consensus 116 ~lv~~n-P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr 156 (258)
+..+.. -...+..+...+...|+ +...+...+..
T Consensus 85 ~~~~~~~~~~~le~~~~~~~~~~~-------~~~~l~~l~~~ 119 (126)
T 3ic7_A 85 SLRKEQFLKEEVGSFFRQLYTLGI-------SIKEIEKMYYE 119 (126)
T ss_dssp HHHHTTCCCCCSHHHHHHHHHTTC-------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-------CHHHHHHHHHH
Confidence 544332 23345566666666665 56677666654
No 83
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.90 E-value=0.013 Score=42.40 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHc----CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQL----GIRPCDISRQL-----RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~~----G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl~ 94 (258)
..|..|++++.+ .++..+|++.| +||.+||||.++.+.+.|-+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 577888888742 47999999999 999999999999999999874
No 84
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=95.89 E-value=0.0073 Score=51.28 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.+|++++.+|++..+||+.||||++||+||+++..
T Consensus 166 ~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~~~ 200 (209)
T 2r0q_C 166 HRVVEMLEEGQAISKIAKEVNITRQTVYRIKHDNG 200 (209)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhccc
Confidence 46778888999999999999999999999998653
No 85
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=95.84 E-value=0.024 Score=43.75 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=47.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
++..++|+.+|||.+|++.|.+ .|.+.|..+..+..+..++++...|..... .+-.+++.+|+..|.
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~----~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~ 70 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN----IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH----TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH----CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 5789999999999999998854 587766543222347788887766554432 233778899988775
No 86
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=95.84 E-value=0.0051 Score=43.61 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=35.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCCCCCCCCCHHHHHHHHHHHHh
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGGSKPRVTTPKVVSYIKELKQK 120 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG~RPrklT~e~~~~I~~lv~~ 120 (258)
++..+||+.||||++|||+|+++- .+ |+ +.|+ +-+-...+++++|.+....
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g----~f-P~piklG~-~~~w~~~ev~~Wl~~~~~~ 63 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG----DL-PKAKVIHG-RARWLYRDHCEFKNKLLSR 63 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH----HC-CCSEESSS-CEEEEHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC----CC-CCCEEeCC-CeEEeHHHHHHHHHHHHHh
Confidence 578999999999999999999963 33 33 2343 3344446667777665543
No 87
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=95.82 E-value=0.0096 Score=44.76 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
..|..|..+++ .|...+++|+.||||++|+++++++|.
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 35566666665 467888999999999999999999984
No 88
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=95.81 E-value=0.016 Score=45.98 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHcC-------C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 48 LPNSVRMRIVELAQLG-------I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G-------~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
+...+...|...+..| + +.+++|+.||||+.||++-+++..+.|.+...++.|
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G 72 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKG 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 3444555555555544 2 899999999999999999999999999886555444
No 89
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=95.79 E-value=0.039 Score=41.67 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=53.2
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVC 139 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~ 139 (258)
.+..+..+||+.+|+|++++++..++.- |. .|.... ..-.+...+++. +++.+..||+..+ |..
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~--G~---------s~~~~~~~~Rl~~A~~lL~-~~~~si~~IA~~~---Gf~ 83 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEM--GE---------HFTDYLNRYRVNYAKEELL-QTKDNLTIIAGKS---GYT 83 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH--SS---------CHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHT---TCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHc---CCC
Confidence 3568999999999999999999999874 21 111111 111222333333 4677888886655 775
Q ss_pred CCCCCCCHHHHHHHHHhccCC
Q psy15598 140 DKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 140 v~~~~pS~STI~RiLrr~~~~ 160 (258)
+.+...|.+++.-+.
T Consensus 84 ------~~s~F~r~Fk~~~G~ 98 (108)
T 3oou_A 84 ------DMAYFYRQFKKHTGE 98 (108)
T ss_dssp ------CHHHHHHHHHHHHSS
T ss_pred ------ChHHHHHHHHHHhCc
Confidence 889999999876543
No 90
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=95.79 E-value=0.015 Score=48.33 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
..++...|.-|+..+-+|++..+||+.||||.+||++++.|-+
T Consensus 186 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKAL 228 (239)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3478888866666667999999999999999999999998865
No 91
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.78 E-value=0.029 Score=44.97 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+.+.+|+.+.. + ..+.++||+.+|+|++||++.+++..+.|.+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 34557887765 4 4899999999999999999999999999976
No 92
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=95.75 E-value=0.014 Score=43.83 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 50 NSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
...|..|.++++ .+...+++|+.||||++|+++++++|.
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345666666665 577899999999999999999999873
No 93
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=95.70 E-value=0.16 Score=40.25 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHc-----C--C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 47 PLPNSVRMRIVELAQL-----G--I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~-----G--~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
|+-..+...|...... | + +.+++|++||||+.||++-+++-...|-+...++.|
T Consensus 14 PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G 75 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKG 75 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcE
Confidence 4444455555555443 4 2 789999999999999999999999999886555444
No 94
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=95.65 E-value=0.099 Score=45.79 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=54.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hC-CCCCHHHHHHHHHh--cCCC
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KD-PGIFAWEIRDRLLS--DGVC 139 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~n-P~ita~EIr~~L~~--~Gv~ 139 (258)
+++.++|+.+|||.+||+.|-+ .|.+.|..+..+.-+..++++...|..++. .+ -.+++.+|++.|.. .|-.
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~----~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~~~~~~~ 76 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLR----EGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLGHVDDDSL 76 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH----HTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHH----CCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCC
Confidence 5789999999999999987754 477766444322457788888777766644 22 37899999998874 2321
Q ss_pred CCCCCCCHHHHHHHHHhccCC
Q psy15598 140 DKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 140 v~~~~pS~STI~RiLrr~~~~ 160 (258)
+...+...+......
T Consensus 77 ------~~~~~l~~~~~~l~~ 91 (222)
T 2dg6_A 77 ------GRTVRLGAALWALPQ 91 (222)
T ss_dssp ------CHHHHHHHHHTTSCC
T ss_pred ------CHHHHHHHHHHHhcc
Confidence 445565666554443
No 95
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.64 E-value=0.024 Score=43.94 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHc-CCCHHHHHHHhC--CCHHHHHHHHHHh
Q psy15598 46 RPLPNSVRMRIVELAQL-GIRPCDISRQLR--VSHGCVSKILARY 87 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~-G~S~~eIAr~LG--VSrsTVsRwikRy 87 (258)
+.++.+....|+.+..+ ..+..+|+..|| ||.+||++|+++.
T Consensus 59 ~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 59 KALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 45888888888887554 589999999999 8999999999874
No 96
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=95.58 E-value=0.053 Score=40.47 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCC
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDK 141 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~ 141 (258)
..+..+||+.+|+|++++.+..++.- |. .|.... ..-.....+++. +++.+..||+..+ |..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~--g~---------s~~~~~~~~Rl~~A~~lL~-~~~~si~~iA~~~---Gf~-- 81 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF--GI---------PFQDYLLQKRMEKAKLLLL-TTELKNYEIAEQV---GFE-- 81 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH--SS---------CHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHT---TCS--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHh---CCC--
Confidence 68999999999999999999999974 21 111111 111222333343 4678888886655 775
Q ss_pred CCCCCHHHHHHHHHhccCC
Q psy15598 142 FNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 142 ~~~pS~STI~RiLrr~~~~ 160 (258)
+.+...|.+++.-+.
T Consensus 82 ----~~s~F~r~Fk~~~G~ 96 (103)
T 3lsg_A 82 ----DVNYFITKFKKYYQI 96 (103)
T ss_dssp ----CHHHHHHHHHHHHSS
T ss_pred ----CHHHHHHHHHHHHCc
Confidence 889999999876543
No 97
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=95.57 E-value=0.005 Score=47.55 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=38.1
Q ss_pred HHHHHHHHHcC--C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC
Q psy15598 53 RMRIVELAQLG--I-RPCDISRQLRVSHGCVSKILARYHETGSILPGA 97 (258)
Q Consensus 53 R~RIV~L~~~G--~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~ 97 (258)
|.+|+..+..| + +..++|+.||||++||++-+++..+.|.|...+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 78888555545 4 999999999999999999999999999886544
No 98
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=95.57 E-value=0.017 Score=44.80 Aligned_cols=56 Identities=23% Similarity=0.182 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHcC-----C---CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 45 GRPLPNSVRMRIVELAQLG-----I---RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G-----~---S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
..++...+...|...+..| . +.+++|++||||+.||++-+++..+.|-+...+..|
T Consensus 7 ~~~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G 70 (113)
T 3tqn_A 7 KKPIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLG 70 (113)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 3445555666666665543 2 889999999999999999999999999886554444
No 99
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=95.53 E-value=0.023 Score=45.29 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQL--GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~~--G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
+.+.+|+.+... ..+.++||+.+|+|++||++.+++..+.|-+.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 467788888753 48999999999999999999999999999763
No 100
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.49 E-value=0.022 Score=42.25 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHHHHHHH-cC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 54 MRIVELAQ-LG-IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 54 ~RIV~L~~-~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+|+++++ .| ++..++|+.|+||..||++-+.+..+.|.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46777765 45 7999999999999999999999999999763
No 101
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=95.47 E-value=0.017 Score=52.10 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=39.8
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
++-.+|..++. ++++..+||++||||+.||+|-+++-++.|.+.-+-.+|
T Consensus 8 ~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 8 RLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 34455666655 689999999999999999999999999999885333343
No 102
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=95.41 E-value=0.0074 Score=42.80 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikR 86 (258)
++..++|+.||||++||++|++.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 46789999999999999999975
No 103
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.40 E-value=0.016 Score=42.94 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHH-c-----C--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 50 NSVRMRIVELAQ-L-----G--IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 50 ~dlR~RIV~L~~-~-----G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+.+.+|+++++ . | .+++|||+.||||.+||++-++...+.|.|.
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 345677777764 3 3 4799999999999999999999999999874
No 104
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=95.37 E-value=0.077 Score=42.10 Aligned_cols=94 Identities=14% Similarity=-0.003 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCC-cccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHH
Q psy15598 50 NSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGS-ILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWE 128 (258)
Q Consensus 50 ~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGs-l~pk~rgG~RPrklT~e~~~~I~~lv~~nP~ita~E 128 (258)
......++.++++|++..+||+.-|++.+||..-+.++...|. +.-..- -+..++++....|.+.+.+.....+..
T Consensus 19 ~~t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~~---i~~~l~~~~~~~I~~~~~~~~~~~Lk~ 95 (122)
T 3iuo_A 19 SKMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYF---INEVMDEDHLEDIFEYFKESTTDSLEE 95 (122)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHHH---HHHHSCHHHHHHHHHHHHHCSCCCHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHH---cccccCHHHHHHHHHHHHHcCcccHHH
Confidence 3577889999999999999999999999999999999999985 311100 011344777788888888877778888
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHH
Q psy15598 129 IRDRLLSDGVCDKFNVPSVSSISRIL 154 (258)
Q Consensus 129 Ir~~L~~~Gv~v~~~~pS~STI~RiL 154 (258)
+.+.|.. . +|+-.|+=++
T Consensus 96 i~e~l~~---~-----~sy~eIRlv~ 113 (122)
T 3iuo_A 96 AMQELGK---D-----YSEEEIRLVR 113 (122)
T ss_dssp HHHHHTT---T-----SCHHHHHHHH
T ss_pred HHHHccC---c-----CCHHHHHHHH
Confidence 8888842 2 3777775443
No 105
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=95.36 E-value=0.061 Score=43.94 Aligned_cols=68 Identities=9% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
-+++.++|+.+|||.+|++.|- +.|.+.|..+..+.-|..++++...|..+.. .+-.+++.+|++.|.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye----~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYD----KQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHH----HTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHH----HCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4789999999999999998764 4577754433322457788887776655533 445889999998886
No 106
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=95.35 E-value=0.03 Score=39.94 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ 119 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~ 119 (258)
++..+||+.+|||++||+++++.-. + . ...+++...+|.+..+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~-----------~-~-~~vs~et~~rI~~aa~ 43 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKA-----------K-Q-YRVSDKTVEKVMAVVR 43 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCT-----------T-T-TTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCC-----------C-C-CCCCHHHHHHHHHHHH
Confidence 4688999999999999999986310 0 0 1255666777766654
No 107
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.32 E-value=0.035 Score=40.63 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=37.0
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
..+.+|+..+. .+.+..+||+.++++++||++.+++..+.|-|.
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34556666653 568999999999999999999999999999774
No 108
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=95.26 E-value=0.032 Score=45.25 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+...+|+.+.. + ..+.++||+.+|+|++||++.+++..+.|.+
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34557777765 3 4899999999999999999999999999976
No 109
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.25 E-value=0.035 Score=44.23 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+...+|+.+.. + ..+.++||+.+|+|++||++.+++..+.|-+
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 49 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGII 49 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 34457777765 3 4899999999999999999999999999976
No 110
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=95.24 E-value=0.044 Score=43.74 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+...+|+.+.+ + ..+.++||+.+|+|++||++.+++..+.|.+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34457777765 3 4899999999999999999999999999976
No 111
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.23 E-value=0.045 Score=43.70 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+.+.+|+.+.. + ..+.++||+.+|+|++||++.+++..+.|.+
T Consensus 7 ~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (150)
T 2w25_A 7 DIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVV 51 (150)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34557777764 4 4899999999999999999999999999976
No 112
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=95.23 E-value=0.045 Score=44.71 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
..+++.++|+.+|||.+|++.|-+ .|.+.|..+..+.-|..++++...|..... ..-.+++.+|+..|.
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~----~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~ 72 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDK----INLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIIL 72 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHH----TTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHH----CCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357899999999999999987654 487766543222457788887766655432 234788888888775
No 113
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.22 E-value=0.048 Score=45.27 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=36.9
Q ss_pred HHHHHHHHHHH-cC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-LG-IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+...+|+.+++ +| .+.++||+.+|+|.+||++.+++.++.|.+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 44557777765 44 899999999999999999999999999976
No 114
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=95.22 E-value=0.033 Score=44.63 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+.+.+|+.+.. + ..+.++||+.+|+|++||++.+++..+.|.+
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 52 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGII 52 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCc
Confidence 44567888765 3 4899999999999999999999999999965
No 115
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.21 E-value=0.032 Score=45.61 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=37.4
Q ss_pred HHHHHHHHHHH-cC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-LG-IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
++..+|+.+.+ +| .+.++||+.+|+|.+||++-+++..+.|.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 45567888876 33 899999999999999999999999999965
No 116
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=95.20 E-value=0.1 Score=39.23 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=53.4
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCC-CHHHHHHHHHHHHhCCC-CCHHHHHHHHHhcCC
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVT-TPKVVSYIKELKQKDPG-IFAWEIRDRLLSDGV 138 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrkl-T~e~~~~I~~lv~~nP~-ita~EIr~~L~~~Gv 138 (258)
.+..+..+||+.+|+|++++.+..++.- |. .|... ...-.+...+++..... ++..||+..+ |.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~--G~---------s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~---Gf 81 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSR--GY---------SPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSC---GF 81 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHT--SS---------CHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHT---TC
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHh--Cc---------CHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh---CC
Confidence 3568999999999999999999999873 21 11111 11122333444444332 7888887655 66
Q ss_pred CCCCCCCCHHHHHHHHHhccCC
Q psy15598 139 CDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 139 ~v~~~~pS~STI~RiLrr~~~~ 160 (258)
. +.+...|.+++.-+.
T Consensus 82 ~------~~s~F~r~Fk~~~G~ 97 (108)
T 3mn2_A 82 S------NLGHFARDYRDMFGE 97 (108)
T ss_dssp C------CHHHHHHHHHHHHSS
T ss_pred C------CHHHHHHHHHHHHCc
Confidence 5 889999999876543
No 117
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=95.20 E-value=0.026 Score=45.47 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHc--CCCHHHHHHHh----------CCCHHHHHHHHHHhhhhCC
Q psy15598 45 GRPLPNSVRMRIVELAQL--GIRPCDISRQL----------RVSHGCVSKILARYHETGS 92 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~--G~S~~eIAr~L----------GVSrsTVsRwikRyrEtGs 92 (258)
.+.++.+.+..|++++.+ +++..+|+..| .+|.+||++|++++.+.|.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~ 140 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPF 140 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCc
Confidence 345788889999998764 58999999988 4899999999999998884
No 118
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.18 E-value=0.024 Score=43.15 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=35.0
Q ss_pred HHHHHHHH-cC-CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 54 MRIVELAQ-LG-IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 54 ~RIV~L~~-~G-~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
.+|+++++ .| ++..++|+.|+||..||++-+.+..+.|.+
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l 46 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKV 46 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 45777765 45 799999999999999999999999999976
No 119
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=95.16 E-value=0.016 Score=42.24 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=26.8
Q ss_pred HHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHH
Q psy15598 53 RMRIVELA-QLGIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 53 R~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwi 84 (258)
+.+|+.+. +.|+|..++|+.+|||++||++|.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 55666555 579999999999999999999883
No 120
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=95.14 E-value=0.0088 Score=48.20 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
..++...|.-++..+-+|++..+||+.||||.+||...+.|-+.
T Consensus 92 ~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp TTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34777788665555679999999999999999999999988764
No 121
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.12 E-value=0.033 Score=43.67 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 52 VRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 52 lR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
.+.+|+.+.. + ..+.++||+.||+|++||++.+++..+.|-+
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 4556777764 3 4899999999999999999999999999976
No 122
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=95.10 E-value=0.046 Score=41.60 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=57.2
Q ss_pred HHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCCHHH
Q psy15598 54 MRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGIFAWE 128 (258)
Q Consensus 54 ~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~ita~E 128 (258)
.++++.++ +..+..+||+.+|||++++.+..++.- |. .|.... ..-.....+++. +++.+..|
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~--G~---------s~~~~~~~~Rl~~A~~lL~-~~~~~i~e 77 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYL--GT---------VPSKYYLELRLNRARQLLQ-QTSKSIVQ 77 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT--SS---------CHHHHHHHHHHHHHHHHHH-HCCCCHHH
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHHH-cCCCCHHH
Confidence 45555554 357999999999999999999999873 21 111111 111223333443 46788888
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 129 IRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 129 Ir~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
|+..+ |.. +.+...|.+++.-+.
T Consensus 78 IA~~~---Gf~------~~s~F~r~Fk~~~G~ 100 (113)
T 3oio_A 78 IGLAC---GFS------SGPHFSSTYRNHFNI 100 (113)
T ss_dssp HHHHT---TCS------CHHHHHHHHHHHHSS
T ss_pred HHHHH---CCC------CHHHHHHHHHHHHCc
Confidence 87655 675 889999999886554
No 123
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=95.09 E-value=0.038 Score=42.56 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-|...+- +|++..+||+.||||++||..++.+-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAl 64 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 64 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467777765555553 689999999999999999999988864
No 124
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.00 E-value=0.057 Score=45.02 Aligned_cols=69 Identities=7% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHc---C-CCHHHHHHHhC-CCHHHHHHHHHHhhhhCCccc-----CCCCCCCCC---CCCHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQL---G-IRPCDISRQLR-VSHGCVSKILARYHETGSILP-----GAIGGSKPR---VTTPKVVSYI 114 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~---G-~S~~eIAr~LG-VSrsTVsRwikRyrEtGsl~p-----k~rgG~RPr---klT~e~~~~I 114 (258)
+....|.+|+.++.. + .+..+|+..++ ||++|||+-++...+.|.|.. +..++++|+ .+|++-+..+
T Consensus 26 l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 26 VLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred hcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 555689999998743 3 68999999999 999999999999999998741 112223565 3788777666
Q ss_pred HH
Q psy15598 115 KE 116 (258)
Q Consensus 115 ~~ 116 (258)
.+
T Consensus 106 ~~ 107 (151)
T 3u1d_A 106 RA 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 125
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=94.99 E-value=0.0079 Score=48.55 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...|.-++..+-+|++..+||+.||||.+||.+++.|-++
T Consensus 135 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALD 177 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3677777666666789999999999999999999999998753
No 126
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=94.98 E-value=0.035 Score=39.56 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 52 VRMRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 52 lR~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+..++-.+. +.|++..++|+.+|||++||++|.+
T Consensus 13 l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 13 LKAIWEKKKNELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 344444444 3699999999999999999999974
No 127
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=94.98 E-value=0.059 Score=39.20 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 46 RPLPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+...+-.+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 8 ~~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 8 DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp SCCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3455567777777765 699999999999999999999976
No 128
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=94.92 E-value=0.031 Score=49.75 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHcC-------C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 44 NGRPLPNSVRMRIVELAQLG-------I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G-------~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
...++-..+...|...+.+| + +..++|++||||+.||++-+++..+.|.|...++.|
T Consensus 26 ~~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 90 (272)
T 3eet_A 26 GEQPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSG 90 (272)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCce
Confidence 34456666666676666544 2 899999999999999999999999999886555444
No 129
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=94.92 E-value=0.04 Score=42.45 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
..|..|..+++ .|-..+++|+.||||++|+++++++|.
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34555555554 577899999999999999999999984
No 130
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=94.92 E-value=0.029 Score=38.08 Aligned_cols=32 Identities=13% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+|-.+. +.|++..++|+.+|||++||++|.+
T Consensus 4 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444544 4799999999999999999999964
No 131
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=94.91 E-value=0.014 Score=40.65 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+..+|..+. +.|++..++|+.+|||++||++|.+
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 10 KFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3445555555 3699999999999999999999864
No 132
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.89 E-value=0.014 Score=40.66 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=23.9
Q ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy15598 57 VELAQLGIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 57 V~L~~~G~S~~eIAr~LGVSrsTVsRwi 84 (258)
-++.+.+.+..++|+.+|||++||++|.
T Consensus 4 ~~~i~~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 4 KDVIDHFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHhCCCHHHHHHHH
Confidence 3455566799999999999999999996
No 133
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=94.81 E-value=0.028 Score=45.67 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=33.6
Q ss_pred CcccCCCCCCHHHHHHHHHHHH-----cC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 40 GVFVNGRPLPNSVRMRIVELAQ-----LG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 40 ~~~~~gR~~S~dlR~RIV~L~~-----~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
|+..+++.-+.+.|.+|++... .| .|..+||+..|||++|+|+..+
T Consensus 1 ~~~~~~~~r~~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 1 GMKIDGETRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred CCCcccCCccHhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 4556777778889999998642 34 6999999999999999998654
No 134
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=94.80 E-value=0.051 Score=46.51 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
..++...|. |+.++.+|++.++||+.||||.+||...+++-++
T Consensus 174 ~~Lt~~e~~-vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 174 QMLSPREML-CLVWASKGKTASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp GSCCHHHHH-HHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358887775 6677789999999999999999999999988763
No 135
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.80 E-value=0.33 Score=37.53 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=37.3
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYI 114 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I 114 (258)
.+.+.++||+.|+|+++||++.+++..+.|-|.-.. +.-.+|++-.+.+
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE----DGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC----CeEEEChhHHHHH
Confidence 457999999999999999999999999999874322 2244666544433
No 136
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=94.78 E-value=0.043 Score=38.25 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+..+|..+.+ .|++..++|+.+|||++||++|.+
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345666666654 699999999999999999999864
No 137
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=94.77 E-value=0.044 Score=37.41 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+|-.+. +.|++..++|+.+|||++||++|.+
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4455554 4799999999999999999999874
No 138
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=94.74 E-value=0.059 Score=38.49 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.++-.+|..+.+ .|++..++|+.+|||++||++|.+
T Consensus 11 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 11 TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 355566666654 699999999999999999999986
No 139
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.74 E-value=0.22 Score=42.49 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=56.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH----------hCCCCCHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ----------KDPGIFAWEIRDR 132 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~----------~nP~ita~EIr~~ 132 (258)
+++..+||+.|+||++||++.+++..+.|-+.-.+. +.-.+|++=++...++.+ +.-.++..++.+.
T Consensus 20 ~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~~~ 96 (214)
T 3hrs_A 20 KITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEE 96 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 589999999999999999999999999998743322 224567664444433332 3334454444332
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHhccC
Q psy15598 133 LLSDGVCDKFNVPSVSSISRILRNKIG 159 (258)
Q Consensus 133 L~~~Gv~v~~~~pS~STI~RiLrr~~~ 159 (258)
....-.. +|..++.++-...+.
T Consensus 97 a~~lEh~-----~s~~~~~~l~~~l~~ 118 (214)
T 3hrs_A 97 AEVLEHT-----VSDHFVERLDQLLDY 118 (214)
T ss_dssp HHHHHTT-----SCHHHHHHHHHHTTC
T ss_pred HHHHhcc-----CCHHHHHHHHHHhCC
Confidence 2221122 488888777665544
No 140
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=94.73 E-value=0.041 Score=41.12 Aligned_cols=44 Identities=7% Similarity=0.314 Sum_probs=39.9
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHH-HHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHG-CVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrs-TVsRwikRyrEtGsl~ 94 (258)
+.+.+|+.+.+ . +.+..+||+.|||+.. .|++-+.+-.+.|.|.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 67899999875 3 5899999999999999 9999999999999986
No 141
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=94.73 E-value=0.042 Score=37.05 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 53 RMRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 53 R~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
-.+|-.+. +.|++..++|+.+|||++||++|.+
T Consensus 7 ~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 34455554 3699999999999999999999864
No 142
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=94.73 E-value=0.048 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+..+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 18 ~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45566666655 599999999999999999999875
No 143
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=94.69 E-value=0.094 Score=39.41 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=52.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCD 140 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v 140 (258)
...+..++|+.+|+|++++.+..++.- |. .|.... ..-.....+++. +++.+..+|+..+ |..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~--G~---------s~~~~~~~~Rl~~A~~lL~-~~~~si~~IA~~~---Gf~- 82 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL--GI---------SVLSWREDQRISQAKLLLS-TTRMPIATVGRNV---GFD- 82 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH--SS---------CHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHT---TCC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHh---CCC-
Confidence 357999999999999999999999863 21 111111 111222333343 4578888886655 775
Q ss_pred CCCCCCHHHHHHHHHhccCC
Q psy15598 141 KFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 141 ~~~~pS~STI~RiLrr~~~~ 160 (258)
+.+...|.+++.-+.
T Consensus 83 -----~~s~F~r~Fk~~~G~ 97 (107)
T 2k9s_A 83 -----DQLYFSRVFKKCTGA 97 (107)
T ss_dssp -----CHHHHHHHHHHHHSS
T ss_pred -----CHHHHHHHHHHHHCc
Confidence 889999999876543
No 144
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.64 E-value=0.065 Score=41.94 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHH-H-cC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 53 RMRIVELA-Q-LG--IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 53 R~RIV~L~-~-~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
+.+|+..+ + .+ ++..+||+.+++|++||+|.+++..+.|-|.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44555554 3 35 7999999999999999999999999999774
No 145
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=94.59 E-value=0.058 Score=37.06 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+-.+|..+.+ .|++..++|+.+|||+++|++|.+
T Consensus 13 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34455555553 699999999999999999999864
No 146
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.55 E-value=0.05 Score=43.12 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHc--CCCHHHHHHHh--------C--CCHHHHHHHHHHhhh
Q psy15598 46 RPLPNSVRMRIVELAQL--GIRPCDISRQL--------R--VSHGCVSKILARYHE 89 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~--G~S~~eIAr~L--------G--VSrsTVsRwikRyrE 89 (258)
+.++.+.+..|++++.+ ..+..+|+..| | +|.+||++|++++.+
T Consensus 89 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 89 KVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp SSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 45888999999998864 58999999998 7 899999999998753
No 147
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=94.53 E-value=0.11 Score=40.00 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCC
Q psy15598 50 NSVRMRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGI 124 (258)
Q Consensus 50 ~dlR~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~i 124 (258)
.++-.+|+..++ +..+..+||+.+|+|++++.+..++. |. .|.... ..-.+...+++ .+++.
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---G~---------s~~~~~~~~Rl~~A~~lL-~~~~~ 72 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE---ET---------SYSQLLTECRMQRALQLI-VIHGF 72 (120)
T ss_dssp CCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT---TC---------CHHHHHHHHHHHHHHHHH-TSTTC
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc---CC---------CHHHHHHHHHHHHHHHHH-HcCCC
Confidence 344456666664 35799999999999999999988763 32 111111 11122233333 56788
Q ss_pred CHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 125 FAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 125 ta~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
+..||+..+ |.. +.+...|.+++.-+.
T Consensus 73 si~eIA~~~---Gf~------~~s~F~r~Fk~~~G~ 99 (120)
T 3mkl_A 73 SIKRVAVSC---GYH------SVSYFIYVFRNYYGM 99 (120)
T ss_dssp CHHHHHHHT---TCS------CHHHHHHHHHHHHSS
T ss_pred CHHHHHHHH---CCC------CHHHHHHHHHHHHCc
Confidence 888887665 665 788999999876654
No 148
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=94.51 E-value=0.056 Score=46.22 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
..++...| .|+.++.+|++.++||+.||||.+||...+++-++
T Consensus 172 ~~Lt~~e~-~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 172 AWLDPKEA-TYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp CCCCHHHH-HHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35888877 56666779999999999999999999999988753
No 149
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.50 E-value=0.085 Score=43.66 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHHH-c-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L-GIRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
+...+|+.+.. + ..+.++||+.+|+|++||++.+++..+.|.+
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34447777765 4 4899999999999999999999999999976
No 150
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=94.48 E-value=0.016 Score=53.23 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 44 NGRPLPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
|++..-...+.+|+.++. ..+|..+||+.+|+|++||++.+++..+.|.+.
T Consensus 13 ~~~~~~~~~~~~il~~l~~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp ---------CCCSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred CchhHHHHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 444444444555666543 458999999999999999999999999999763
No 151
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.45 E-value=0.19 Score=38.90 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=42.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
..+.+..+||+.++++++||++.+++..+.|-|.-... .+ ..--.+|++-.+.+.+..
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 35799999999999999999999999999998753222 11 122347777666555443
No 152
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=94.43 E-value=0.073 Score=41.55 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHc----CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCH-HHHHHHHHHHHhCCC
Q psy15598 49 PNSVRMRIVELAQL----GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTP-KVVSYIKELKQKDPG 123 (258)
Q Consensus 49 S~dlR~RIV~L~~~----G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~-e~~~~I~~lv~~nP~ 123 (258)
..+.-.+|++.+++ ..+..+||+.+|+|++++.+..++.- |. .|..... .-.....+++. +.+
T Consensus 9 ~~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~--G~---------s~~~~l~~~Rl~~A~~lL~-~~~ 76 (129)
T 1bl0_A 9 DAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET--GH---------SLGQYIRSRKMTEIAQKLK-ESN 76 (129)
T ss_dssp CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHH--SS---------CHHHHHHHHHHHHHHHHHH-HCC
T ss_pred hHHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHHH-cCC
Confidence 44445566666653 57999999999999999999999873 21 1111111 11222333343 357
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 124 IFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 124 ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
.+..+|+..+ |.. +.+...|.+++.-+.
T Consensus 77 ~si~~IA~~~---Gf~------~~s~F~r~Fk~~~G~ 104 (129)
T 1bl0_A 77 EPILYLAERY---GFE------SQQTLTRTFKNYFDV 104 (129)
T ss_dssp CCHHHHHHHT---TCS------CHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHH---CCC------CHHHHHHHHHHHHCc
Confidence 7888886655 775 889999999987665
No 153
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=94.43 E-value=0.061 Score=44.98 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH-c-C-CCHHHHHHHhCCCHHHHHHHHHHhhhhCC-cc
Q psy15598 51 SVRMRIVELAQ-L-G-IRPCDISRQLRVSHGCVSKILARYHETGS-IL 94 (258)
Q Consensus 51 dlR~RIV~L~~-~-G-~S~~eIAr~LGVSrsTVsRwikRyrEtGs-l~ 94 (258)
+.+.+|+.+.. + + ++.+++|+.||||++||++-+++.++.|. +.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 45677888875 3 4 89999999999999999999999999997 53
No 154
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=94.42 E-value=0.39 Score=41.19 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=57.0
Q ss_pred HHcCCCH--HHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH----------hCCCCCHH
Q psy15598 60 AQLGIRP--CDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ----------KDPGIFAW 127 (258)
Q Consensus 60 ~~~G~S~--~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~----------~nP~ita~ 127 (258)
.++|.+. .+||+.|+|+++||++.+++..+.|-+.-.+. +.-.+|++-.+.+.++.+ +.-.++..
T Consensus 19 ~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~~~~~~~~e~~l~~~lgl~~e 95 (226)
T 2qq9_A 19 EEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD---RSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDIN 95 (226)
T ss_dssp HHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC---CCeEECHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3457766 99999999999999999999999998753322 224566654444433332 21234444
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHhccC
Q psy15598 128 EIRDRLLSDGVCDKFNVPSVSSISRILRNKIG 159 (258)
Q Consensus 128 EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~ 159 (258)
++.+.....-.. +|..++.|+....+.
T Consensus 96 e~~~~a~~leh~-----~s~~~~~~l~~~l~~ 122 (226)
T 2qq9_A 96 KVHDEADRWEHV-----MSDEVERRLVKVLKD 122 (226)
T ss_dssp HHHHHHHHHTTT-----CCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhh-----CCHHHHHHHHHHhCC
Confidence 443333221111 477888777665543
No 155
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=94.42 E-value=0.047 Score=40.18 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+..+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 9 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 45556666654 699999999999999999999864
No 156
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=94.41 E-value=0.034 Score=39.54 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+...+-.+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 8 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 8 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 33455566666654 699999999999999999999854
No 157
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.40 E-value=0.038 Score=40.98 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=39.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCC-CCCCCCHHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGS-KPRVTTPKVVSYIKELK 118 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~-RPrklT~e~~~~I~~lv 118 (258)
++..+||+.++++++||++.+++..+.|-|. .+..++ +--.+|++-.+.+.++.
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~-~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVE-CELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE-EEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc-CCCCCCeEEEEEChhHHHHHHHHH
Confidence 8999999999999999999999999999882 222221 22357776665555443
No 158
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.40 E-value=0.17 Score=38.60 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=42.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCCCCC--CCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGGSKP--RVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG~RP--rklT~e~~~~I~~lv 118 (258)
.+.+..+||+.++++++||++.+++..+.|-+.-. +..+ |. -.+|++-.+.+.+..
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~-R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK-RGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS-SCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccC-ceeEeEEChhHHHHHHHHH
Confidence 57899999999999999999999999999987422 2222 22 347777666665554
No 159
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.39 E-value=0.054 Score=37.41 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 53 RMRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 53 R~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
-.+|-.+. +.|++..++|+.+|||+++|++|.+
T Consensus 7 ~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34444544 3699999999999999999999864
No 160
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=94.39 E-value=0.031 Score=40.90 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=20.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy15598 65 RPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 65 S~~eIAr~LGVSrsTVsRwikR 86 (258)
+..++|+.||||++||++|++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 161
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=94.37 E-value=0.052 Score=46.12 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 50 NSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 50 ~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+.+.+|+.+..+ .++.++||+.+|+|.+||++-+++..+.|-+.
T Consensus 19 d~~~~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 19 EDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp SHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4677888888765 48999999999999999999999999999764
No 162
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=94.33 E-value=0.039 Score=37.87 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhC--CCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLR--VSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LG--VSrsTVsRwik 85 (258)
.+-.+|-.+.+ .|++..++|+.+| ||+++|++|.+
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 34455555554 6999999999999 99999999875
No 163
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.32 E-value=0.066 Score=41.02 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=37.0
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELA-QLGIRPCDISRQL-RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~-~~G~S~~eIAr~L-GVSrsTVsRwikRyrEtGsl~ 94 (258)
..+..|+... +.+++..+||+.+ +|+++||++.+++..+.|-|.
T Consensus 22 ~~~~~IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 22 KWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVH 67 (112)
T ss_dssp TTHHHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEE
T ss_pred ccHHHHHHHHHhCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEE
Confidence 3455666654 4568999999999 999999999999999999874
No 164
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=94.30 E-value=0.11 Score=38.16 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHHHh
Q psy15598 44 NGRPLPNSVRMRIVELAQLG-IRPCDISRQLRVSHGCVSKILARY 87 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G-~S~~eIAr~LGVSrsTVsRwikRy 87 (258)
..+.|+.|.-+..|+++.+| +|+..+|+.|||.++|+..=++.-
T Consensus 10 ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~ 54 (70)
T 2cob_A 10 RYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKER 54 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhh
Confidence 45679999999999999999 999999999999999998766654
No 165
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=94.30 E-value=0.042 Score=36.83 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.9
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|++..++|+.+|||++||++|.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999864
No 166
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=94.25 E-value=0.067 Score=37.95 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 52 VRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 52 lR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+..+|..+.+ .|++..++|+.+|||+++|++|.+
T Consensus 15 ~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 15 LLDLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3445555543 699999999999999999999864
No 167
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=94.14 E-value=0.13 Score=43.50 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHc-----C--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHH
Q psy15598 45 GRPLPNSVRMRIVELAQL-----G--IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVS 112 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~-----G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~ 112 (258)
..+++..+-..|...+.. | ++..++|++||||+++|+.-+++....|-|...++.|..=..++.+...
T Consensus 10 ~~~l~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ 84 (218)
T 3sxy_A 10 VDLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIR 84 (218)
T ss_dssp ----CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHHHH
Confidence 345666555555555543 3 4889999999999999999999999999887666555322334444333
No 168
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=94.14 E-value=0.064 Score=37.77 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+|-.+. +.|++..++|+.+|||++||++|.+
T Consensus 5 ~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 5 NELKVERIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3444444 4699999999999999999998863
No 169
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.14 E-value=0.15 Score=40.50 Aligned_cols=63 Identities=24% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHH
Q psy15598 52 VRMRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 52 lR~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~l 117 (258)
+-..|+.+.. .+.+.++||+.|+||++||++.+++..+.|-|.-.+ + +.-.+|+.-...+...
T Consensus 41 ~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~--~-~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 41 YVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP--W-RGVFLTAEGEKLAQES 105 (155)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET--T-TEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec--C-CceEEChhHHHHHHHH
Confidence 3334444543 468999999999999999999999999999774332 1 2345666555444443
No 170
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.13 E-value=0.15 Score=39.72 Aligned_cols=51 Identities=22% Similarity=0.161 Sum_probs=38.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIK 115 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~ 115 (258)
.+.+.++||+.|+||++||++.+++..+.|-|.-.+. +.-.+|+.-...+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~---~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY---RGLVLTSKGKKIGK 71 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT---TEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC---ceEEEchhHHHHHH
Confidence 5799999999999999999999999999998743221 22445655444433
No 171
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.12 E-value=0.17 Score=39.07 Aligned_cols=57 Identities=16% Similarity=0.020 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCC-CCCCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGS-KPRVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~-RPrklT~e~~~~I~~lv 118 (258)
.+.+.++||+.++++++||++.+++..+.|-|.-.. ..++ .--.+|++-.+.+.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 109 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR 109 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence 678999999999999999999999999999874222 2221 12237777666655543
No 172
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.12 E-value=0.2 Score=39.36 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCCCC--CCCCHHHHHHHHHH
Q psy15598 54 MRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGSKP--RVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~RP--rklT~e~~~~I~~l 117 (258)
..|+..+ + .+.+..+||+.++++++||++.+++..+.|-|.-.. ..+ |. -.+|++-.+.+..+
T Consensus 47 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR-RTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS-SCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc-ceeEEEECHHHHHHHHHH
Confidence 3444443 3 578999999999999999999999999999774222 122 22 34677766655554
No 173
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=94.12 E-value=0.11 Score=40.98 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH-cC-CCHHHHHHHh--CCCHHHHHHHHHHhhhhCCcccCCCCCCCC-CCCCHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-LG-IRPCDISRQL--RVSHGCVSKILARYHETGSILPGAIGGSKP-RVTTPKVVSYIK 115 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G-~S~~eIAr~L--GVSrsTVsRwikRyrEtGsl~pk~rgG~RP-rklT~e~~~~I~ 115 (258)
...+.+|+.++. +| .+..+||+.+ ++|+++|++-+++-.+.|.|... | ++ -.+|++-.+++.
T Consensus 12 d~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~-rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---A-NGVYVITEEGEAYLN 78 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---S-TTCEEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---C-CceEEECchHHHHHH
Confidence 355678888875 34 8999999999 99999999999999999988643 2 22 457777666554
No 174
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=94.11 E-value=0.081 Score=37.31 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 52 VRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 52 lR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+-.+|-.+.+ .|++..++|+.+|||+++|++|.+
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4455555553 699999999999999999998864
No 175
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.10 E-value=0.09 Score=45.73 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 46 RPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
..++...|.-++.. .+|++.++||+.||||.+||...+.|-++
T Consensus 196 ~~L~~~erevl~L~-~~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 196 NILSEREKEILRCI-RKGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TSSCHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46888888655554 69999999999999999999999998763
No 176
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.08 E-value=0.14 Score=39.50 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=37.6
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
.+.+.++||+.++++++||++.+++..+.|-|.-... .+ ..--.+|++-.+.+.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 5799999999999999999999999999998743221 12 122347777666665553
No 177
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.06 E-value=0.18 Score=39.02 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHH-HH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVEL-AQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 48 ~S~dlR~RIV~L-~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~lv 118 (258)
++...- .|+.. .. .+.+.++||+.++++++||++.+++..+.|-|.-.. ..+ .+.-.+|++-.+.+....
T Consensus 38 l~~~~~-~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 38 IGMTEW-RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp CCHHHH-HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 444433 34443 34 468999999999999999999999999999774222 112 133457777666665554
No 178
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=94.05 E-value=0.055 Score=47.04 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHcC-------C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 44 NGRPLPNSVRMRIVELAQLG-------I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G-------~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
...++-..+...|.+...+| + +..++|++||||+.||++-++...+.|.+...++.|
T Consensus 6 ~~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 70 (236)
T 3edp_A 6 AKKPLFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVG 70 (236)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCce
Confidence 34455566777777777654 2 789999999999999999999999999986555444
No 179
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=94.05 E-value=0.026 Score=42.53 Aligned_cols=51 Identities=25% Similarity=0.259 Sum_probs=38.1
Q ss_pred HHHHHHHHH-HHHcC--C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 50 NSVRMRIVE-LAQLG--I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 50 ~dlR~RIV~-L~~~G--~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
..+|.+|+. .+..| + +.+++|+.||||++||++-+++..+.|.+...+..|
T Consensus 18 ~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~G 72 (102)
T 1v4r_A 18 THFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALG 72 (102)
T ss_dssp HHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTE
T ss_pred HHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCe
Confidence 345555555 23333 3 899999999999999999999999999886444333
No 180
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=94.02 E-value=0.061 Score=44.31 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=45.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHH---HHHHHHhCCCCCHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSY---IKELKQKDPGIFAWEIRDRLL 134 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~---I~~lv~~nP~ita~EIr~~L~ 134 (258)
.-+++.++|+.+|||.+|++.|-+ .|.+.|....+ .-|..++++... |..+... .+++.+|++.|.
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~----~Gll~p~r~~~-g~R~Y~~~dl~~l~~I~~lr~~--G~sl~eI~~~l~ 78 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYES----KGLITSIRNSG-NQRRYKRDVLRYVAIIKIAQRI--GIPLATIGEAFG 78 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHH----TTSSCCEECTT-SCEEBCTTHHHHHHHHHHHHHH--TCCHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH----cCCCCcccCCC-CCEEeCHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 458999999999999999987754 47676543222 345666665554 4444333 788999988774
No 181
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=94.01 E-value=0.062 Score=38.21 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.8
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
+.| +..++|+.+|||++||++|.+.
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 358 9999999999999999999875
No 182
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=93.99 E-value=0.077 Score=37.99 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQK 120 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~ 120 (258)
.+..+||+.+|||++||+++++. ++ ..+++..+.|.+.+++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln~---------------~~-~vs~~t~~rV~~~a~~ 50 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALMN---------------PD-KVSQATRNRVEKAARE 50 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTTC---------------CC-CSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC---------------CC-CCCHHHHHHHHHHHHH
Confidence 68999999999999999998732 12 2567777877777654
No 183
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.93 E-value=0.19 Score=38.76 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHH-H--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 54 MRIVELA-Q--LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 54 ~RIV~L~-~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~lv 118 (258)
..|+..+ . .+.+.++||+.++|+++||++.+++..+.|-|.-.. ..+ ..--.+|++-...+....
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 3444443 3 468999999999999999999999999999874222 122 112347777666655553
No 184
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=93.88 E-value=0.11 Score=44.57 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCCCCC
Q psy15598 108 PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIVQH 165 (258)
Q Consensus 108 ~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~~~~ 165 (258)
+.-.+.|++++.++.--+..||.+.|++.|+.+ ++.+||+|-|+..+..|....
T Consensus 32 ~~r~~~I~eiI~~~~I~TQeEL~~~L~~~Gi~v----iTQATvSRDIkELglvKv~~~ 85 (180)
T 3v4g_A 32 DNLVRAFKALLKEERFGSQGEIVEALKQEGFEN----INQSKVSRMLTKFGAVRTRNA 85 (180)
T ss_dssp HHHHHHHHHHHHHTCCCSHHHHHHHHHHTTCTT----CCHHHHHHHHHHTTCEEEECT
T ss_pred HHHHHHHHHHHhhCCcCCHHHHHHHHHHCCCcc----cCHHHHHHHHHHcCCEEeeCC
Confidence 456789999999999999999999999999984 599999999999999987643
No 185
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.88 E-value=0.14 Score=39.62 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=41.9
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCC-CCCCCCHHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGS-KPRVTTPKVVSYIKELKQ 119 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~-RPrklT~e~~~~I~~lv~ 119 (258)
.+.+.++||+.++++++||++.+++..+.|-|.-.+ ..++ .--.+|++-.+.+.++..
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 112 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLS 112 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 458999999999999999999999999999874322 2221 112477776666655543
No 186
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.87 E-value=0.21 Score=38.86 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=35.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
.+.+.++||+.++++++||++.+++-.+.|-|.-... .+ ..--.+|++-.+.+.+..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 5799999999999999999999999999998743321 12 123347777666655543
No 187
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=93.85 E-value=0.058 Score=38.70 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.+++|+.||||+++|++|++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHHT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHh
Confidence 39999999999999999999964
No 188
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=93.82 E-value=0.078 Score=38.76 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=25.6
Q ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 55 RIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 55 RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+|-.+. +.|++..++|+.+|||++||++|.+
T Consensus 12 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 12 IIQESLDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 333433 4699999999999999999999986
No 189
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=93.77 E-value=0.053 Score=37.75 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=23.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|++..++|+.+|||++||++|.+
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999875
No 190
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=93.75 E-value=0.22 Score=39.48 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=41.7
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CCC-CCCCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GGS-KPRVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG~-RPrklT~e~~~~I~~lv 118 (258)
.+.+..+||+.++|+++||++.+++..+.|-|.-... .++ .--.+|++-.+.+.+..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 5799999999999999999999999999998743322 221 12247777666655553
No 191
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.75 E-value=0.22 Score=38.39 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 48 ~S~dlR~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
++... ..|+... ..|.+.++||+.+++|++||++.+++-.+.|-|.-.+. .+ ..--.+|++-...+....
T Consensus 36 lt~~~-~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 36 LTNTQ-EHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp CCHHH-HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 45443 4455554 45699999999999999999999999999998743221 22 123346665555544443
No 192
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=93.74 E-value=0.065 Score=39.52 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=41.1
Q ss_pred CCCHHHHHHHhCCCHHH-HHHHHHHhhhhCCcccCCCCCC-CCCCCCHHHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGC-VSKILARYHETGSILPGAIGGS-KPRVTTPKVVSYIKELK 118 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsT-VsRwikRyrEtGsl~pk~rgG~-RPrklT~e~~~~I~~lv 118 (258)
+.+.++||+.++++++| |++.+++..+.|-|...+..++ .--.+|++-.+.+.+..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~ 87 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLE 87 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHH
Confidence 58999999999999999 9999999999998862222221 12347777666555543
No 193
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=93.73 E-value=0.031 Score=42.58 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHh-CCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQL-GIRPCDISRQL-RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~~-G~S~~eIAr~L-GVSrsTVsRwikRyrEtGsl~ 94 (258)
..|..|+....+ +.+.++||+.+ +||.+||++.+++..+.|-|.
T Consensus 14 ~~~~~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~ 59 (107)
T 2hzt_A 14 KWKXVILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVIN 59 (107)
T ss_dssp TTHHHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 346667766544 58999999999 999999999999999999874
No 194
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.73 E-value=0.23 Score=38.37 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCC-CCCCCCCHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 48 ~S~dlR~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG-~RPrklT~e~~~~I~~l 117 (258)
++... ..|+..+ . .+.+.++||+.++++++||++.+++..+.|-|.-. +..+ ...-.+|++-.+.+.+.
T Consensus 40 l~~~~-~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 113 (150)
T 2rdp_A 40 ITPPQ-FVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (150)
T ss_dssp SCHHH-HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHH
Confidence 45432 3344443 3 57899999999999999999999999999977422 1122 12234777766655544
No 195
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=93.73 E-value=0.045 Score=44.18 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhh
Q psy15598 44 NGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHET 90 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEt 90 (258)
++.......|.+.|..--.|.+..++|+.+|+|..+|++++++.+..
T Consensus 73 k~~~~~~~~Rn~~I~~~f~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 73 RGQALDSLIRDLRIWNDFNGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33333445777777665579999999999999999999999988743
No 196
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=93.73 E-value=0.079 Score=36.27 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 60 AQLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 60 ~~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.| +..++|+.+|||.++|++|++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 3568 999999999999999999995
No 197
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=93.72 E-value=0.15 Score=34.52 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHH-HHH-c-CCCHHHHHHHh-----CCCHHHHHHHHH
Q psy15598 50 NSVRMRIVE-LAQ-L-GIRPCDISRQL-----RVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~-L~~-~-G~S~~eIAr~L-----GVSrsTVsRwik 85 (258)
...|..+|. +.. . ..+..+|++.| +||.+||+|.++
T Consensus 3 ~~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 3 KGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 345665544 444 3 47999999999 999999999999
No 198
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.69 E-value=0.14 Score=39.32 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHHHHH-H--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 55 RIVELA-Q--LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 55 RIV~L~-~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.|+..+ . .+.+..+||+.++++++||++.+++..+.|-|.
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 344444 3 468999999999999999999999999999774
No 199
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=93.68 E-value=0.13 Score=43.55 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCCCCC
Q psy15598 109 KVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIVQH 165 (258)
Q Consensus 109 e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~~~~ 165 (258)
+-...|++++.++.--+..||.+.|++.|+.+ +.+||+|-|+.++..|....
T Consensus 20 ~R~~~I~~iI~~~~I~tQeEL~~~L~~~Gi~v-----TQATlSRDikEL~lvKv~~~ 71 (170)
T 3lap_A 20 GRQARIVAILSSAQVRSQNELAALLAAEGIEV-----TQATLSRDLEELGAVKLRGA 71 (170)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-----CHHHHHHHHHHHTCEEECCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCc-----CchhHHHHHHHcCcEEeecC
Confidence 34678999999999999999999999999986 99999999999999987643
No 200
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=93.67 E-value=0.11 Score=44.88 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
...++...+ +|+.+..+|++.++||+.|+||.+||...+++-.+
T Consensus 173 ~~~Lt~re~-~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 173 NVRLTARET-EMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp GCCCCHHHH-HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345777666 57777789999999999999999999999998763
No 201
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.66 E-value=0.23 Score=38.04 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=40.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCCC-CCCCCCHHHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGGS-KPRVTTPKVVSYIKELK 118 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG~-RPrklT~e~~~~I~~lv 118 (258)
+.+.++||+.++++++||++.+++..+.|-|.-. +..++ .--.+|++-.+.+.+..
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 7899999999999999999999999999987422 22221 12347777666655543
No 202
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=93.64 E-value=0.012 Score=48.84 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-++..+-+|++..+||+.||||.+||++++.|-+
T Consensus 198 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 239 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKIL 239 (243)
T ss_dssp ------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467777765555567999999999999999999999998865
No 203
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.64 E-value=0.21 Score=38.76 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=43.6
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCC-CCCCCCHHHHHHHHHH
Q psy15598 54 MRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGS-KPRVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~-RPrklT~e~~~~I~~l 117 (258)
..|+..+ . .+.+.++||+.++++++||++.+++..+.|-|.-.. ..++ .--.+|++-.+.+...
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 3444443 3 468999999999999999999999999999874222 1221 1224677655555444
No 204
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.63 E-value=0.044 Score=46.00 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHc-CCCHHHHHHHhC-CCHHHHHHHHHHhhhhCCcc
Q psy15598 46 RPLPNSVRMRIVELAQL-GIRPCDISRQLR-VSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~-G~S~~eIAr~LG-VSrsTVsRwikRyrEtGsl~ 94 (258)
+-++.-.|.+|+.+..+ +++.++||+.|+ ++.+||++-++..++.|-|+
T Consensus 18 ~~La~P~Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~ 68 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLM 68 (182)
T ss_dssp HHTTSHHHHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEE
T ss_pred HHhCCHHHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeE
Confidence 34778899999999864 589999999996 99999999999999999764
No 205
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=93.62 E-value=0.17 Score=44.69 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ-KDPGIFAWEIRDRLL 134 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~-~nP~ita~EIr~~L~ 134 (258)
+.+++.++|+.+|||..|++.|-+ .|.+.|..+..+.-|..++++...|..++. ..-.+++.+|+..|.
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~----~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~ 71 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDK----IGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILD 71 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHH----TTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH----CCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhc
Confidence 357899999999999999976654 688877653322457788877766655433 334788888888775
No 206
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=93.61 E-value=0.09 Score=48.42 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 50 NSVRMRIVELAQL--GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 50 ~dlR~RIV~L~~~--G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
..-+.+|+.++.. .+|..+||+.+|+|++||++++++..+.|.+.
T Consensus 15 ~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 3455678888763 48999999999999999999999999999763
No 207
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.59 E-value=0.19 Score=38.63 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=41.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~l 117 (258)
..+.+.++||+.++++++||++.+++..+.|-|.-.. ..+ ...-.+|++-...+...
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 107 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHH
Confidence 4568999999999999999999999999999874221 122 11234677666555444
No 208
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=93.55 E-value=0.077 Score=37.54 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=22.8
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|+|..++|+.+|||++||++|-+
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4799999999999999999999864
No 209
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=93.52 E-value=0.21 Score=39.69 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCC-CCCCCCHHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGS-KPRVTTPKVVSYIKELK 118 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~-RPrklT~e~~~~I~~lv 118 (258)
.|+..+ . .+.+..+||+.++|+++||++.+++..+.|-|.-.. ..++ .--.+|++-.+.+.+..
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 344443 3 579999999999999999999999999999874222 2221 12347777666655543
No 210
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.51 E-value=0.24 Score=37.84 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
+.+..+||+.++++++||++.+++..+.|-|.
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 58999999999999999999999999999774
No 211
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=93.50 E-value=0.18 Score=42.73 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVS 112 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~ 112 (258)
++..++|++||||+++|+.-+++....|-|...++.|..=+.++.+...
T Consensus 40 L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~~ 88 (222)
T 3ihu_A 40 LVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETL 88 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHH
Confidence 4789999999999999999999999999987666656332334544333
No 212
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.50 E-value=0.21 Score=40.04 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~lv 118 (258)
.+.+.++||+.++++++||++.+++..+.|-|.-.. ..+ ..--.+|++-.+.+.+..
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 117 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT 117 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 578999999999999999999999999999874221 122 112347777666655543
No 213
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=93.48 E-value=0.085 Score=39.47 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=25.7
Q ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 55 RIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 55 RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+|..+. +.|++..++|+.+|||++||++|.+
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 444444 4799999999999999999998865
No 214
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=93.47 E-value=0.071 Score=45.34 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHcC-------C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 47 PLPNSVRMRIVELAQLG-------I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G-------~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
++...+-..|.+.+..| + +-.++|++||||+.||+.-+++-...|-|...++.|
T Consensus 7 ~~~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~G 68 (239)
T 1hw1_A 7 SPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKP 68 (239)
T ss_dssp SHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCC
Confidence 34444555555555443 3 789999999999999999999999999886555444
No 215
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=93.46 E-value=0.061 Score=40.60 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
|...+...+-.+|-.+.+ .|++..++|+.+|||+++|++|.+
T Consensus 21 M~~~~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 21 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 333444556666666654 699999999999999999999854
No 216
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=93.42 E-value=0.11 Score=41.87 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 45 GRPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.-..+.|++|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 4 ~~~~~~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 4 TKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 3445677899999864 344 6999999999999999998643
No 217
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=93.41 E-value=0.085 Score=42.01 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
|+|+ ..+.|.+|++.. +.| .|.++||+..|||++|+|+....
T Consensus 1 M~R~-~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 1 MARW-DPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPD 50 (195)
T ss_dssp CCSS-CTTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSS
T ss_pred CCCC-cHHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 4554 456777888754 334 79999999999999999987654
No 218
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=93.40 E-value=0.12 Score=37.42 Aligned_cols=50 Identities=8% Similarity=0.204 Sum_probs=34.6
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFA 126 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~nP~ita 126 (258)
+.|++..++|+.+|||++||++|.+- . +..+.+....|.+.+.-++....
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~e~g-----~-----------~~~~~~~l~~ia~~l~v~~~~l~ 77 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALFNG-----I-----------NALNAYNAALLAKILKVSVEEFS 77 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTT-----S-----------SCCCHHHHHHHHHHHTSCGGGTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC-----C-----------CCCCHHHHHHHHHHHCCCHHHHh
Confidence 46999999999999999999999752 1 11234455666666655554433
No 219
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=93.32 E-value=0.059 Score=46.71 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=41.1
Q ss_pred CHHHHHHHHHH-HHcC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 49 PNSVRMRIVEL-AQLG--IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 49 S~dlR~RIV~L-~~~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
-..+|..|+.. +..| ++..++|++||||++||+.-+++....|.|...+++|
T Consensus 32 ~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G 86 (237)
T 3c7j_A 32 EEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKG 86 (237)
T ss_dssp HHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCc
Confidence 34566667653 3334 6999999999999999999999999999987665555
No 220
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=93.30 E-value=0.078 Score=36.68 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=22.9
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|++..++|+.+|||++||++|.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999874
No 221
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=93.27 E-value=0.09 Score=48.16 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH--cC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCC
Q psy15598 51 SVRMRIVELAQ--LG--IRPCDISRQLRVSHGCVSKILARYHETGS 92 (258)
Q Consensus 51 dlR~RIV~L~~--~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGs 92 (258)
+.|.+|+++.. .| +|..+||++||||+++|++-+++.++.|.
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 36788998873 35 79999999999999999999999999996
No 222
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=93.27 E-value=0.13 Score=41.07 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+++-..+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 5 ~~r~r~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 5 RGRPRNIETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 35556778899998864 234 6999999999999999999764
No 223
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=93.25 E-value=0.096 Score=37.44 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 52 VRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 52 lR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+=.+|-.+.+ .|++..++|+.+|||+++|++|.+
T Consensus 11 ~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 11 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3445555554 799999999999999999999864
No 224
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.22 E-value=0.35 Score=37.94 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=42.8
Q ss_pred HHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~l 117 (258)
.|+..+ . .+.+..+||+.++|+++||++.+++..+.|-|.-.. ..+ ..--.+|++-.+.+.+.
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 120 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETV 120 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 344443 3 469999999999999999999999999999874322 122 12234677766655544
No 225
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.21 E-value=0.13 Score=44.56 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHH-c--CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15598 49 PNSVRMRIVELAQ-L--GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQK 120 (258)
Q Consensus 49 S~dlR~RIV~L~~-~--G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~ 120 (258)
+.+.-.+|++++. . +++.++||+.+|++++||+|.++...+.|-+.-. ..+ .-.+++...+.-......
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~~--~Y~lg~~~~~l~~~~~~~ 77 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-KDK--RYVPGYKLIEYGSFVLRR 77 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-TTS--CEEECTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC-CCC--cEEECHHHHHHHHHHHhc
Confidence 3444567787764 2 5899999999999999999999999999987533 222 233555544443333333
No 226
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.21 E-value=0.27 Score=38.26 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=44.3
Q ss_pred HHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc--CCCCCC-C--CCCCCHHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILP--GAIGGS-K--PRVTTPKVVSYIKELK 118 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p--k~rgG~-R--PrklT~e~~~~I~~lv 118 (258)
.|+..+ . .+.+.++||+.++++++||++.+++..+.|-|.- ...... | --.+|++-.+.+.+..
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 444443 3 4689999999999999999999999999998754 322211 2 2347777666655543
No 227
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=93.16 E-value=0.091 Score=39.78 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+-.+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 9 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35556666654 699999999999999999999976
No 228
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=93.15 E-value=0.17 Score=40.78 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHc---CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQL---GIRPCDISRQL-----RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~~---G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl~ 94 (258)
..|..|++++.+ .+|..+|.+.| +||.+||||-++.+.+.|.+.
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 467788888742 47999999999 899999999999999999763
No 229
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.13 E-value=0.19 Score=39.67 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=43.4
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHH
Q psy15598 54 MRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~l 117 (258)
..|+..+ . .+.+.++||+.++|+++||++.+++..+.|-|.-.. ..+ .+--.+|++-.+.+...
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 123 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 123 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 3444443 3 468999999999999999999999999999874221 122 11234677655555444
No 230
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=93.13 E-value=0.19 Score=42.98 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=38.2
Q ss_pred HHHHHHHHH-HHcC--C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCccc--CCC--CC
Q psy15598 51 SVRMRIVEL-AQLG--I-RPCDISRQLRVSHGCVSKILARYHETGSILP--GAI--GG 100 (258)
Q Consensus 51 dlR~RIV~L-~~~G--~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p--k~r--gG 100 (258)
.+|..|+.. +.-| + +-.++|++||||+++|+.-+++-...|-|+. .++ +|
T Consensus 12 ~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G 69 (239)
T 2di3_A 12 WVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSG 69 (239)
T ss_dssp HHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGC
T ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCC
Confidence 344555543 2234 4 5789999999999999999999999999877 666 55
No 231
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.07 E-value=0.18 Score=39.42 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=41.4
Q ss_pred HHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCC-CC--CCCCHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGS-KP--RVTTPKVVSYIKEL 117 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~-RP--rklT~e~~~~I~~l 117 (258)
.|+..+ . .+.+.++||+.++++++||++.+++..+.|-|.-.+.... |. -.+|++-.+.+.+.
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 112 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV 112 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH
Confidence 344443 3 5789999999999999999999999999998743322111 21 23666655555444
No 232
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=93.06 E-value=0.16 Score=36.42 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCC
Q psy15598 106 TTPKVVSYIKELKQKD--PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSS 161 (258)
Q Consensus 106 lT~e~~~~I~~lv~~n--P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~ 161 (258)
+++. +..|.+++.+. ...++.||.+.|.+.+..+ |.+||+|.|+.+....
T Consensus 15 ~t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i-----s~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 15 VTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI-----GLATVYRVLNQFDDAG 66 (83)
T ss_dssp CCHH-HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHT
T ss_pred cCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC-----CHhhHHHHHHHHHHCC
Confidence 4554 45566666554 4689999999998776654 9999999998765443
No 233
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.02 E-value=0.31 Score=38.01 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc----CCCCC-CCCCCCCHHHHHHHHHH
Q psy15598 60 AQLGIRPCDISRQLRVSHGCVSKILARYHETGSILP----GAIGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 60 ~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p----k~rgG-~RPrklT~e~~~~I~~l 117 (258)
...+.+.++||+.++++++||++.+++..+.|-|.- .+..+ ..--.+|++-.+.+.+.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~ 110 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKER 110 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHH
Confidence 446799999999999999999999999999998753 22222 12234777655555544
No 234
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.00 E-value=0.17 Score=39.48 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=39.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
+++.++||+.++++++||++.+++..+.|-|.-... .+ ..--.+|++-.+.+.+..
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 579999999999999999999999999998743222 12 112347777666665554
No 235
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=92.94 E-value=0.065 Score=39.94 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=28.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
.+..+||++||++++.|.|.+-+..+.|.+
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V 59 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTV 59 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 689999999999999999999999999987
No 236
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=92.93 E-value=0.093 Score=38.12 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=27.3
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHH
Q psy15598 52 VRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 52 lR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwi 84 (258)
+-.+|-.+.+ .|+|..++|+.+|||+++|++|.
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 4556666554 79999999999999999999885
No 237
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.93 E-value=0.27 Score=38.24 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCC-CCCCCCCHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG-~RPrklT~e~~~~I~~l 117 (258)
.|+..+ . .+.+.++||+.++++++||++.+++..+.|-|.-. +..+ ...-.+|++-...+...
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 108 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 344443 3 46899999999999999999999999999977422 1122 11234677655554443
No 238
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=92.92 E-value=0.069 Score=39.44 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=44.0
Q ss_pred HHHHHH-H-cCCCHHHH----HHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDI----SRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eI----Ar~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv 118 (258)
.|+..+ + .+.+..+| |+.++++++||++.+++..+.|-+.-...++.+--.+|++-.+.+..+.
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 344444 3 46899999 8999999999999999999999874322112123447776666555443
No 239
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=92.90 E-value=0.24 Score=38.08 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=39.9
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCCCC--CCCCHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGSKP--RVTTPKVVSYIKEL 117 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~RP--rklT~e~~~~I~~l 117 (258)
.+.+.++||+.+++|++||++.+++..+.|-|.-.. ..+ |. -.+|++-...+...
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~-R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK-KIKRIYATEKGKNVYPII 100 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT-TCEEEEECHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC-ceeeeEEChhHHHHHHHH
Confidence 468999999999999999999999999999774221 122 22 34677655555444
No 240
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=92.89 E-value=1.1 Score=38.31 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHH-HcCCCH--HHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRP--CDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 54 ~RIV~L~-~~G~S~--~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv 118 (258)
.+++... +.|.+. .+||+.|++|++||++.+++..+.|-+.-.+. +.-.+|+.-.+.+.+..
T Consensus 12 L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~~ 76 (230)
T 1fx7_A 12 LRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAIAVM 76 (230)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHHHHH
Confidence 3444433 468877 99999999999999999999999998754332 33457777666555444
No 241
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.86 E-value=0.14 Score=40.45 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=37.6
Q ss_pred HHHHHHHHHHH-c--CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ-L--GIRPCDISRQL-----RVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~-~--G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl 93 (258)
..|..|++++. . .+|..+|.+.| +||.+||||.++.+.+.|.+
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 46888888875 2 37999999999 89999999999999999975
No 242
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.86 E-value=0.14 Score=38.13 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCC
Q psy15598 107 TPKVVSYIKELKQKDP---GIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSI 162 (258)
Q Consensus 107 T~e~~~~I~~lv~~nP---~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~ 162 (258)
..+.+..|++++++++ .+++.||++.|. +|.+||++.|.++..+..
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg----------vsr~tV~~~L~~Le~~G~ 56 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG----------TPKKEINRVLYSLAKKGK 56 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT----------CCHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC----------cCHHHHHHHHHHHHHCCC
Confidence 3556778889999988 899999999884 499999999998765543
No 243
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.85 E-value=0.068 Score=49.85 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 52 VRMRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 52 lR~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
-+.+|+.++. ..+|..+||+.+|+|++||++++++..+.|.+..
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4556887764 3589999999999999999999999999997643
No 244
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.83 E-value=0.08 Score=40.64 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=30.9
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+++.++||+.+|++++||++.+++..+.|-|.
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 568999999999999999999999999999874
No 245
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=92.80 E-value=0.17 Score=44.09 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHcC-------C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 47 PLPNSVRMRIVELAQLG-------I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G-------~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
++...+...|......| + +.+++|++||||+.||++-++...+.|.+.-.+..|
T Consensus 10 ~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 71 (243)
T 2wv0_A 10 PIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCe
Confidence 33444555555555433 2 789999999999999999999999999886555444
No 246
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=92.80 E-value=0.18 Score=41.98 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHHH-cCC--CHHHHHHHhCCC-HHHHHHHHHHhhhhCCcc
Q psy15598 52 VRMRIVELAQ-LGI--RPCDISRQLRVS-HGCVSKILARYHETGSIL 94 (258)
Q Consensus 52 lR~RIV~L~~-~G~--S~~eIAr~LGVS-rsTVsRwikRyrEtGsl~ 94 (258)
+..+|.++.+ .|+ +.+++|+.+||+ ++||++|+++..+.|.+.
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~ 57 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIE 57 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCce
Confidence 4455666554 588 999999999999 999999999887766553
No 247
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=92.79 E-value=0.17 Score=44.62 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE 89 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE 89 (258)
.++...+ +|+.+..+|++..+||+.|+||.+||...+++-++
T Consensus 197 ~Lt~re~-~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~ 238 (265)
T 3qp6_A 197 PLSQREY-DIFHWMSRGKTNWEIATILNISERTVKFHVANVIR 238 (265)
T ss_dssp CCCHHHH-HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5776665 46666679999999999999999999999998763
No 248
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=92.77 E-value=0.17 Score=40.00 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=40.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCCCC--CCCCHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGSKP--RVTTPKVVSYIKEL 117 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~RP--rklT~e~~~~I~~l 117 (258)
.+.+..+||+.++++++||++.+++..+.|-|.-.. ..+ |- -.+|++-.+.+.+.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr-R~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR-RSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CCEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC-CeeEEEECHHHHHHHHHH
Confidence 568999999999999999999999999999874222 222 22 23677655555544
No 249
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=92.75 E-value=0.23 Score=38.76 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=44.8
Q ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 54 MRIVELAQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 54 ~RIV~L~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
..|+..+. .+.+.++||+.++++++||++.+++..+.|-|.-... .+ ..--.+|++-.+.+.+..
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 34555543 4689999999999999999999999999998743221 22 122347777666665543
No 250
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.66 E-value=0.23 Score=37.77 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 47 ~~S~dlR~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~l 117 (258)
.++... ..|+..+ . .+.+.++||+.++++++||++.+++..+.|-+.-... .+ ..--.+|++-.+.+.+.
T Consensus 35 ~l~~~~-~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 35 GLTPTQ-WAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp CCCHHH-HHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 355432 3444443 3 5789999999999999999999999999997742211 11 11234677766655544
No 251
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=92.64 E-value=0.21 Score=39.66 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHc----CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQL----GIRPCDISRQL-----RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~~----G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl~ 94 (258)
..|..|++++.+ ..+..+|.+.| +||.+||||-++.+.+.|.+.
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 467788888753 37999999999 899999999999999999763
No 252
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.64 E-value=0.066 Score=39.23 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 106 TTPKVVSYIKELKQKDP---GIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 106 lT~e~~~~I~~lv~~nP---~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
++++.+..|..++++++ .+++.||++.|. +|.+||+|.|.++..+
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----------vs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLG----------TPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC----------CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC----------cCHHHHHHHHHHHHHC
Confidence 45666788889999998 899999999883 4999999999987544
No 253
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=92.62 E-value=0.1 Score=37.38 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 58 ELAQLGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 58 ~L~~~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
++.+.+ +..++|+.||||.++|++|++.
T Consensus 9 ~~~~~~-s~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 9 DYAMRF-GQTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp HHHHHH-CHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHC-CHHHHHHHhCCCHHHHHHHHHh
Confidence 345555 9999999999999999999974
No 254
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.60 E-value=0.29 Score=39.28 Aligned_cols=52 Identities=23% Similarity=0.022 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCC
Q psy15598 105 VTTPKVVSYIKELKQK-DPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSI 162 (258)
Q Consensus 105 klT~e~~~~I~~lv~~-nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~ 162 (258)
++|+. +..|.+++.+ +..+++.||.+.|++.+..+ |.+||+|.|+.+....+
T Consensus 19 r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i-----s~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 19 RITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNM-----SVATVYNNLRVFRESGL 71 (145)
T ss_dssp CCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC-----CHHHHHHHHHHHHHTTS
T ss_pred CCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-----ChhhHHHHHHHHHHCCC
Confidence 35555 5555555554 45689999999998777664 99999999998776654
No 255
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=92.59 E-value=0.14 Score=38.86 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.++..+.. |++..++|+..|||++|++.+.+
T Consensus 21 ~~~~kLK~il~-GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 21 TVRNALKDLLK-DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHHHT-TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHH-hcCHHHHHHHcCCCHHHHHHHHc
Confidence 35566666655 99999999999999999998864
No 256
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=92.59 E-value=0.18 Score=38.25 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCCCCC--CCCCHHHHHHHHHH
Q psy15598 54 MRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGGSKP--RVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG~RP--rklT~e~~~~I~~l 117 (258)
..|+..+ . .+.+.++||+.++++++||++.+++..+.|-+.-. +..+ |. -.+|+.-.+.+...
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~-r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ-RETLVYLTKKGEETKKQV 104 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT-TCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC-ceeEEEECHHHHHHHHHH
Confidence 3444444 3 45899999999999999999999999999977422 1122 22 34677766655544
No 257
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.57 E-value=0.072 Score=45.69 Aligned_cols=47 Identities=32% Similarity=0.303 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++...|.+|+.+.. .+++..+||+.+|+|.+||++-+++..+.|-|.
T Consensus 12 L~~~~rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~ 59 (202)
T 2p4w_A 12 LGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIE 59 (202)
T ss_dssp HHSHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 45578888998875 468999999999999999999999999999763
No 258
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=92.41 E-value=0.36 Score=38.89 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCC
Q psy15598 104 RVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSI 162 (258)
Q Consensus 104 rklT~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~ 162 (258)
-++|+. +..|.+.+.+....++.||.+.|.+.+..+ |.+||+|.|..+....+
T Consensus 15 ~r~T~q-R~~Il~~l~~~~h~ta~ei~~~l~~~~~~i-----s~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 15 YRLTPQ-RQLVLEAVDTLEHATPDDILGEVRKTASGI-----NISTVYRTLELLEELGL 67 (145)
T ss_dssp CCCCHH-HHHHHHHHHHHSSBCHHHHHHHHHTTCTTC-----CHHHHHHHHHHHHHHTS
T ss_pred CCcCHH-HHHHHHHHHhcCCCCHHHHHHHHHhhCCCC-----CHhHHHHHHHHHHHCCc
Confidence 335665 445555544434789999999999877664 99999999987665544
No 259
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=92.35 E-value=0.2 Score=44.23 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHH
Q psy15598 52 VRMRIVELA--QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSY 113 (258)
Q Consensus 52 lR~RIV~L~--~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~ 113 (258)
...+|+.+. +.+++.++||+.+|++++||+|.+++..+.|-+.-..+. +.-.+|+.-...
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~--~~~~LT~~G~~l 214 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKD--RKVELNELGLNV 214 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT--TEEEECHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCc--cEEEECHHHHHH
Confidence 445666664 357999999999999999999999999999987533211 223466665443
No 260
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=92.32 E-value=0.13 Score=38.98 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
...+-.+|-.+.+ .|++..++|+.+|||+++|++|.+
T Consensus 26 ~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 26 REALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3455566666654 699999999999999999999863
No 261
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=92.25 E-value=0.26 Score=37.42 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 45 GRPLPNSVRMRIVELAQ---LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
...+...+..+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 28 ~~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 28 PKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp CCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44566778777777765 489999999999999999998854
No 262
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=92.25 E-value=0.15 Score=37.90 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+|..+. +.|++..++|+.+|||++||++|.
T Consensus 33 ~~lk~~R~~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 33 PRIKIIRRALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3455554 379999999999999999999994
No 263
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=92.25 E-value=0.23 Score=39.96 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=36.2
Q ss_pred HHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 53 RMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 53 R~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
+..|+..+.. .++..+|++.+|||++||++-+++..+.|-|.
T Consensus 26 ~l~IL~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~ 68 (146)
T 2f2e_A 26 SMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMV 68 (146)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5566666554 48999999999999999999999999999875
No 264
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=92.24 E-value=0.073 Score=39.97 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHc--CCCHHHHHHHh---C-------CCHHHHHHHHHHh
Q psy15598 46 RPLPNSVRMRIVELAQL--GIRPCDISRQL---R-------VSHGCVSKILARY 87 (258)
Q Consensus 46 R~~S~dlR~RIV~L~~~--G~S~~eIAr~L---G-------VSrsTVsRwikRy 87 (258)
+.++.+.+..|++++.+ ..+..+|+..| | +|.+||++|+++.
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~~ 127 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 127 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC---
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHhc
Confidence 45777788888888753 58999999999 7 5999999999864
No 265
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=92.24 E-value=0.18 Score=43.56 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
++..++|++||||+++|+.-+++....|-|...++.|
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G 88 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRG 88 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCe
Confidence 4899999999999999999999999999887665555
No 266
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=92.23 E-value=0.14 Score=44.33 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=37.0
Q ss_pred HHHHHHHHHH-HHcC--C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 50 NSVRMRIVEL-AQLG--I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 50 ~dlR~RIV~L-~~~G--~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
..++.+|..- +..| + +..++|++||||+.||++-++...+.|.+.-.+..|
T Consensus 12 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g~G 66 (239)
T 3bwg_A 12 TEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSG 66 (239)
T ss_dssp HHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCce
Confidence 3444454442 2233 3 889999999999999999999999999875444333
No 267
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=92.20 E-value=0.23 Score=38.14 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwi 84 (258)
+..++=.+|-.+.+ .|+|..++|+.+|||++||++|-
T Consensus 33 l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 33 LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHH
Confidence 34456667777764 79999999999999999999884
No 268
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.18 E-value=0.49 Score=38.91 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQ---LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 48 ~S~dlR~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~lv 118 (258)
++...-.-+..+.. .+++.++||+.++++++||++.+++..+.|-|.-.. ..+ ..--.+|++-.+.+.+..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 55544333333443 479999999999999999999999999999874222 122 122347777666655554
No 269
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.16 E-value=0.15 Score=40.35 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCCC
Q psy15598 110 VVSYIKELKQKD-PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIV 163 (258)
Q Consensus 110 ~~~~I~~lv~~n-P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~~ 163 (258)
++..|.+++.+. ..+++.||.+.|++.+..+ |.+||+|.|+.+.....-
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i-----s~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGENI-----GLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-----CHhhHHHHHHHHHHCCCE
Confidence 355666666544 4689999999999877664 999999999988777653
No 270
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=92.11 E-value=0.25 Score=38.04 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
.+.+.++||+.++++++||++.+++..+.|-|.-
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r 86 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITR 86 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEe
Confidence 5689999999999999999999999999998753
No 271
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.11 E-value=0.3 Score=37.41 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHH
Q psy15598 54 MRIVELA--QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~--~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~l 117 (258)
..|+..+ ..+.+..+||+.++++++||++.+++..+.|-|.-... .+ ...-.+|++-...+...
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 3344443 35789999999999999999999999999997743211 11 11234677766655544
No 272
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=92.10 E-value=0.23 Score=37.76 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=42.6
Q ss_pred HHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHH
Q psy15598 55 RIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 55 RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~l 117 (258)
.|+... . .+.+.++||+.++++++||++.+++..+.|-+.-.. ..+ ...-.+|++-...+...
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHH
Confidence 344443 3 468999999999999999999999999999874321 111 01234666655544443
No 273
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=92.07 E-value=0.31 Score=37.06 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCC-CCCCCCCHHHHHHH
Q psy15598 54 MRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGG-SKPRVTTPKVVSYI 114 (258)
Q Consensus 54 ~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG-~RPrklT~e~~~~I 114 (258)
..|+..+ . .+.+.++||+.+++|++||++.+++..+.|-+.-. +..+ .+.-.+|++-.+.+
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 3455444 3 56899999999999999999999999999976422 1122 11234666655544
No 274
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=92.04 E-value=0.22 Score=39.57 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHh-CCCHHHHHHHHHHhhhhCCcccCCCCCCCC---CCCCHHHHHHH
Q psy15598 51 SVRMRIVELAQL-GIRPCDISRQL-RVSHGCVSKILARYHETGSILPGAIGGSKP---RVTTPKVVSYI 114 (258)
Q Consensus 51 dlR~RIV~L~~~-G~S~~eIAr~L-GVSrsTVsRwikRyrEtGsl~pk~rgG~RP---rklT~e~~~~I 114 (258)
..|..|+..+.. +++..+|++.+ |||.+||++.+++..+.|-|.-......++ -.+|+.-.+.+
T Consensus 35 ~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 35 RWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 456667666544 58999999999 799999999999999999875322222122 24777654433
No 275
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=92.02 E-value=0.24 Score=39.08 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=32.3
Q ss_pred CCCC-C-HHHHHHHHHHHH-----c---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 45 GRPL-P-NSVRMRIVELAQ-----L---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 45 gR~~-S-~dlR~RIV~L~~-----~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
+++- + .+.|.+|++... . +.|.++||+..|||++|+|+..+.
T Consensus 9 ~r~r~~~~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 9 GRPAVPDAVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 4444 6 888999988642 3 479999999999999999987543
No 276
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=92.02 E-value=0.14 Score=44.33 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHc---CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 54 MRIVELAQL---GIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 54 ~RIV~L~~~---G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
.+|++++.+ +++.++||+.+|++++||+|+++...+.|-+.-
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 53 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEA 53 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 467776642 589999999999999999999999999998753
No 277
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=91.99 E-value=0.23 Score=43.64 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=30.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQ 119 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~ 119 (258)
.+.++||+..|||++||+|.++.- +. .+++.+++|.+..+
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~---------------~~-vs~~tr~rV~~~a~ 40 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKT---------------RF-VAEETRNAVWAAIK 40 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC---------------SC-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCc---------------CC-CCHHHHHHHHHHHH
Confidence 368999999999999999999831 11 45666777666544
No 278
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=91.96 E-value=0.15 Score=41.19 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
++|+-..+.|.+|++.. +.| .|..+||+..|||++|+|+...
T Consensus 16 ~~r~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 16 RGRRPAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 55566677888888854 234 7999999999999999998743
No 279
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=91.95 E-value=0.2 Score=45.43 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQLG--IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
+.+.+|+.+..++ ++..++|++|+||++||+|-++..++.|.+.
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 5677888888653 7999999999999999999999999999653
No 280
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=91.93 E-value=0.73 Score=36.67 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+.+.++||+.++|+++||++.+++..+.|-|.
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 357889999999999999999999999999874
No 281
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=91.92 E-value=0.16 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHh-CCCHHHHHHHHHHhhhhCCcc
Q psy15598 52 VRMRIVELAQL-GIRPCDISRQL-RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 52 lR~RIV~L~~~-G~S~~eIAr~L-GVSrsTVsRwikRyrEtGsl~ 94 (258)
.|..|+....+ +++..+|++.+ |||.+||++.+++..+.|-|.
T Consensus 26 ~~~~IL~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 26 WTLLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIK 70 (107)
T ss_dssp SHHHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEE
Confidence 35566665544 58999999999 599999999999999999875
No 282
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=91.91 E-value=0.18 Score=37.41 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 56 IVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 56 IV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
|-.+. ..|++..++|+.+|||++||++|.+
T Consensus 6 l~~~r~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 6 IKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33443 4799999999999999999999975
No 283
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=91.90 E-value=0.42 Score=36.71 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+-.+|-.+.+ .|+|..++|+.+|||++||++|.+
T Consensus 11 ~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 456677777764 799999999999999999999975
No 284
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=91.90 E-value=0.31 Score=38.63 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCC
Q psy15598 105 VTTPKVVSYIKELKQKD--PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSI 162 (258)
Q Consensus 105 klT~e~~~~I~~lv~~n--P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~ 162 (258)
++|+. +..|.+++.+. ...++.||.+.|++.+..+ |.+||+|.|+.+.....
T Consensus 15 r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i-----s~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 15 KVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDV-----GLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHTS
T ss_pred CCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHCCc
Confidence 35554 66666666654 3689999999999877664 99999999988766544
No 285
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=91.85 E-value=0.36 Score=38.80 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHH-HH--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVEL-AQ--LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L-~~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++... ..|+.. .. .+++.++||+.++|+++||++.+++..+.|-|.
T Consensus 51 lt~~q-~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 51 LTQTH-WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp CCHHH-HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHH-HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 55443 334443 34 358999999999999999999999999999874
No 286
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=91.72 E-value=0.41 Score=41.54 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHhC------
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKD------ 121 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~n------ 121 (258)
.+.+.=.++|....+..+.++||+.|+||.+||+.-+++.++.|.+.-.+ +| -.+|++=.+...++.+..
T Consensus 15 ~s~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~-~G---v~LTe~G~~~A~~i~~rhr~~~~l 90 (200)
T 2p8t_A 15 YTVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ-RG---HFLTLKGKEIRDKLLSMFSEPIGV 90 (200)
T ss_dssp CCHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---C---EEECHHHHHHHHHHHTTBCCCEEE
T ss_pred CCHHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC-CC---eEECHHHHHHHHHHHHHHHHhcCc
Confidence 44444445555555678999999999999999999999999999886554 33 678888777776665533
Q ss_pred ---------------CCCCHHHHHHHHHhcCCC
Q psy15598 122 ---------------PGIFAWEIRDRLLSDGVC 139 (258)
Q Consensus 122 ---------------P~ita~EIr~~L~~~Gv~ 139 (258)
|....-++||.+...|.+
T Consensus 91 ~~~~~~~~~~vv~~~~~~~~i~lRD~~Ir~Ga~ 123 (200)
T 2p8t_A 91 SVDGYPGIAIVVKNPPEFKSIELRDEAIKFDAK 123 (200)
T ss_dssp EETTEEEEEEEESSCCCCCHHHHHHHHHHTTCS
T ss_pred cccCCceEEEEecCCcccchHHHhHHHHHcCCc
Confidence 233455777777765543
No 287
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=91.70 E-value=0.58 Score=42.65 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=53.9
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVC 139 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~ 139 (258)
.+..+..++|+.+|+|+++++|..+++- |. .+.... ..-.+...+++ .++..+..+|+..+ |..
T Consensus 319 ~~~~~~~~~a~~~~~s~~~l~r~f~~~~--g~---------s~~~~~~~~r~~~a~~~L-~~~~~~i~~ia~~~---Gf~ 383 (412)
T 4fe7_A 319 CKGIKVDQVLDAVGISRSNLEKRFKEEV--GE---------TIHAMIHAEKLEKARSLL-ISTTLSINEISQMC---GYP 383 (412)
T ss_dssp GGTCCHHHHHHHTTCCHHHHHHHHHHHH--SS---------CHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHT---TCS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHc---CCC
Confidence 3578999999999999999999999873 21 111111 11122223333 34577888887766 665
Q ss_pred CCCCCCCHHHHHHHHHhccCC
Q psy15598 140 DKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 140 v~~~~pS~STI~RiLrr~~~~ 160 (258)
+.+...|.+|+.-+.
T Consensus 384 ------~~~~f~~~Fk~~~g~ 398 (412)
T 4fe7_A 384 ------SLQYFYSVFKKAYDT 398 (412)
T ss_dssp ------CHHHHHHHHHHHSSS
T ss_pred ------CHHHHHHHHHHHHCc
Confidence 899999999987654
No 288
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=91.70 E-value=0.22 Score=39.46 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 9 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 9 QNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHc
Confidence 3567788888754 234 699999999999999999854
No 289
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=91.63 E-value=0.23 Score=36.27 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 55 RIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 55 RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+|-.+. ..|++..++|+.+|||++||++|.+
T Consensus 8 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 8 KIVLMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 333443 4699999999999999999998854
No 290
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=91.59 E-value=0.14 Score=44.74 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHcC--C-CHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCC
Q psy15598 49 PNSVRMRIVELAQLG--I-RPCDISRQLRVSHGCVSKILARYHETGSILPGAIGG 100 (258)
Q Consensus 49 S~dlR~RIV~L~~~G--~-S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG 100 (258)
-.+++.+|.. +..| + +..++|++||||+.||++-+++-.+.|.+.- +..|
T Consensus 20 ~~~l~~~I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~G 72 (248)
T 3f8m_A 20 RAELDRMLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGRT 72 (248)
T ss_dssp HHHHHHHHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETTE
T ss_pred HHHHHHHHhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CCCE
Confidence 3456666664 5445 3 8899999999999999999999999998866 5444
No 291
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.57 E-value=0.28 Score=37.34 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=41.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG-~RPrklT~e~~~~I~~lv 118 (258)
.+.+.++||+.++++++||++.+++..+.|-|.-.. ..+ ..--.+|++-.+.+....
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS 108 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 568999999999999999999999999999774221 111 112347777666655543
No 292
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=91.55 E-value=0.29 Score=37.22 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwi 84 (258)
...+-.+|-.+.+ .|++..++|+.+|||+++|++|.
T Consensus 19 ~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3455666666654 79999999999999999999885
No 293
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=91.55 E-value=0.23 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.++||+..|||++||+|.++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 57899999999999999999875
No 294
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=91.55 E-value=0.22 Score=40.82 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
|++.-..+.|.+|++.. +.| .|.++||+..|||++|||+...
T Consensus 21 M~r~~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~ 70 (217)
T 3hta_A 21 MPRRHDPERRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFA 70 (217)
T ss_dssp SCGGGSHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCCCchhHHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhcCC
Confidence 56777788899998864 234 6999999999999999998643
No 295
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=91.55 E-value=0.2 Score=39.02 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=23.0
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|+|..++|+.+|||++||++|-+
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4799999999999999999999865
No 296
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=91.51 E-value=0.14 Score=39.76 Aligned_cols=64 Identities=6% Similarity=0.053 Sum_probs=42.8
Q ss_pred HHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCC-CCCCCCHHHHHHHHHH
Q psy15598 54 MRIVELA--QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGS-KPRVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~--~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~-RPrklT~e~~~~I~~l 117 (258)
..|+... ..+.+.++||+.++++++||++.+++..+.|-|.-.+ ..++ .--.+|++-.+.+.+.
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL 107 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHH
Confidence 3444443 2468999999999999999999999999999874222 2221 1123677655555444
No 297
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=91.46 E-value=0.13 Score=42.27 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+-.+|-.+.+ .|++..++|+.+|||+++|++|.+
T Consensus 9 ~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~ 45 (198)
T 2bnm_A 9 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWEN 45 (198)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345566666654 699999999999999999999865
No 298
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=91.45 E-value=0.36 Score=39.27 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.++..+||..+|+|+.||+|.++++++.|-+.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57999999999999999999999999999884
No 299
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=91.38 E-value=0.3 Score=37.64 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCC-C--CCCCCHHHHHHHHHHH
Q psy15598 55 RIVELA-QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGS-K--PRVTTPKVVSYIKELK 118 (258)
Q Consensus 55 RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~-R--PrklT~e~~~~I~~lv 118 (258)
.|+..+ +.+.+.++||+.++++++||++.+++..+.|-|.-...... | --.+|++-.+.+.+..
T Consensus 41 ~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 41 SILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 444444 33339999999999999999999999999998742221111 1 2347777666655543
No 300
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.37 E-value=0.35 Score=39.18 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=40.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv 118 (258)
.+.++||+.++|+++||++.+++..+.|-|.-... .+ ..--.+|++-.+.+.+..
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 89999999999999999999999999998743221 12 122347777666665543
No 301
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=91.35 E-value=0.33 Score=38.93 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 47 ~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
..+.+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 53 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYF 53 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHC
Confidence 36778899988864 234 699999999999999999753
No 302
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=91.29 E-value=0.24 Score=38.00 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC--CCCCCC--CCCCHHHHHHHHHH
Q psy15598 54 MRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA--IGGSKP--RVTTPKVVSYIKEL 117 (258)
Q Consensus 54 ~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~--rgG~RP--rklT~e~~~~I~~l 117 (258)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-|.-.. ..+ |. -.+|++-...+...
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~-R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ-REVFIHLTDKSETIRPEL 108 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST-TCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc-ceEEEEEChHHHHHHHHH
Confidence 3444444 3 358999999999999999999999999999874322 122 22 23677655555443
No 303
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=91.23 E-value=0.1 Score=39.45 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHH-HH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 53 RMRIVE-LA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 53 R~RIV~-L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
-.+|.. +. ..|++..++|+.+|||++||++|.+
T Consensus 12 g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 12 GDILLYEYLEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp HHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344444 33 4699999999999999999999975
No 304
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=91.19 E-value=0.19 Score=37.38 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.8
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+|-.+. +.|++..++|+.+|||++||++|.+
T Consensus 21 ~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 21 EVIADILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3344443 4699999999999999999999975
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=91.19 E-value=0.33 Score=39.29 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCC
Q psy15598 106 TTPKVVSYIKELKQKD-PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSI 162 (258)
Q Consensus 106 lT~e~~~~I~~lv~~n-P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~ 162 (258)
+|+. +..|.+++.+. ...++.||.+.|++.+..+ |.+||+|.|+.+.....
T Consensus 25 ~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i-----s~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 25 NSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNT-----SISSVYRILNFLEKENF 76 (150)
T ss_dssp CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC-----CHHHHHHHHHHHHHTTS
T ss_pred CCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-----CHhhHHHHHHHHHHCCc
Confidence 4444 56666666554 4689999999998776664 99999999998776654
No 306
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=91.13 E-value=0.29 Score=39.52 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHH-----c---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELAQ-----L---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~-----~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.-..+.|.+|++... . +.|.++||+..|||++|+|+..+
T Consensus 8 ~~~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~ 54 (198)
T 3cjd_A 8 ARKAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQ 54 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHhC
Confidence 345678888888642 3 47999999999999999998654
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=91.12 E-value=0.36 Score=39.09 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHc---CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCc
Q psy15598 49 PNSVRMRIVELAQL---GIRPCDISRQL-----RVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 49 S~dlR~RIV~L~~~---G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl 93 (258)
....|..|++++.+ ..|..+|.+.| +||.+||||-++.+.+.|.+
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34678888888752 47999999999 89999999999999999976
No 308
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=91.11 E-value=0.21 Score=40.45 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHH-----c--CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 45 GRPLPNSVRMRIVELAQ-----L--GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 45 gR~~S~dlR~RIV~L~~-----~--G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.-..+.|.+|++... . +.|.++||+..|||++|||+...
T Consensus 14 ~~~~~~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 14 TRESGRQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp ------CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHcC
Confidence 34455678888888642 3 48999999999999999998754
No 309
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=91.09 E-value=0.19 Score=40.11 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 46 RPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 46 R~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.-..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 4 r~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 51 (193)
T 2dg8_A 4 GHTDPQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFT 51 (193)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCS
T ss_pred CCCChhHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCC
Confidence 333446777777754 234 7999999999999999997643
No 310
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=91.05 E-value=0.4 Score=37.66 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 46 RPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 46 R~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.-..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 12 ~~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 12 RLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcC
Confidence 344667888888864 245 6999999999999999998643
No 311
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=91.02 E-value=0.27 Score=37.69 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcC-CC--HHHHHHHh-CCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHH
Q psy15598 51 SVRMRIVELAQLG-IR--PCDISRQL-RVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVS 112 (258)
Q Consensus 51 dlR~RIV~L~~~G-~S--~~eIAr~L-GVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~ 112 (258)
..|..|+.....| .+ ..+|++.+ |||.+++++-+++-.+.|-|.-... ...--.+|+.-.+
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~ 91 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMN 91 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHH
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHH
Confidence 3477788777665 56 99999999 9999999999999999998753322 1112346665433
No 312
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.96 E-value=0.57 Score=39.46 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=45.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CCC-CCCCCCHHHHHHHHHHHHhC
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GGS-KPRVTTPKVVSYIKELKQKD 121 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG~-RPrklT~e~~~~I~~lv~~n 121 (258)
..+++..+||+.++|+++||++.+++..+.|-|.-... .++ .--.+|++-.+.+.......
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 123 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEF 123 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999998743221 221 22347888777777776543
No 313
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=90.89 E-value=0.2 Score=40.34 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=29.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5889999999999999999999999999874
No 314
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=90.84 E-value=0.27 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
|++.++||+.++++.+||.+++++..+.|-|.
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 89999999999999999999999999999774
No 315
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=90.81 E-value=0.21 Score=40.40 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|-+.
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 5889999999999999999999999999874
No 316
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=90.72 E-value=0.3 Score=39.48 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
-+.+.|.+|++.. +.| .|..+||+..|||++|||+..+
T Consensus 8 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 8 ESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp -CTHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 3557788888864 344 6999999999999999999754
No 317
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=90.70 E-value=0.16 Score=44.38 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 51 SVRMRIVELAQ---LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 51 dlR~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
+.-.+|++++. .+++.++||+.+|++++||+|+++...+.|-+.
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~ 60 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA 60 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34456777664 368999999999999999999999999999774
No 318
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=90.67 E-value=0.52 Score=40.44 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=55.9
Q ss_pred HHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCC-CCHHHHHHHHHHHHhCCCCCHHH
Q psy15598 54 MRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRV-TTPKVVSYIKELKQKDPGIFAWE 128 (258)
Q Consensus 54 ~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrk-lT~e~~~~I~~lv~~nP~ita~E 128 (258)
.++++.++ +..+..++|+.+|+|++++.+..+ . +|. .|.. +...-.....+++. +.+.+..|
T Consensus 172 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk--~-~G~---------t~~~~l~~~Rl~~A~~lL~-~~~~si~e 238 (276)
T 3gbg_A 172 EKISCLVKSDITRNWRWADICGELRTNRMILKKELE--S-RGV---------KFRELINSIRISYSISLMK-TGEFKIKQ 238 (276)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH--T-TTC---------CHHHHHHHHHHHHHHHHHH-HTCCCHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH--H-cCC---------CHHHHHHHHHHHHHHHHHh-CCCCCHHH
Confidence 34555543 458999999999999999999995 2 543 1111 11222333333443 45788888
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 129 IRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 129 Ir~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
|+..+ |.. +.+...|+.|+.-+.
T Consensus 239 IA~~~---Gf~------~~s~F~r~Fkk~~G~ 261 (276)
T 3gbg_A 239 IAYQS---GFA------SVSYFSTVFKSTMNV 261 (276)
T ss_dssp HHHHT---TCS------CHHHHHHHHHHHHSS
T ss_pred HHHHh---CCC------CHHHHHHHHHHHHCc
Confidence 87766 665 888999999886554
No 319
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=90.61 E-value=0.28 Score=40.60 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=39.0
Q ss_pred CCHHHHHHHhC--------------CCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHH
Q psy15598 64 IRPCDISRQLR--------------VSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 64 ~S~~eIAr~LG--------------VSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~l 117 (258)
....++|+.|| ||++||++.+++..+.|.|+..+.+| +.+++...+.|.++
T Consensus 68 ~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G---~~Vt~~~~~~l~~i 132 (150)
T 2v7f_A 68 VGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKG---RVITPKGRSFLDKI 132 (150)
T ss_dssp BCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTE---EEECHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCc---eEECCCCHHHHHHH
Confidence 56699999999 99999999999999999987554444 45555555545444
No 320
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=90.60 E-value=0.21 Score=40.38 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.6
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.|.+|++.. +.| .|.++||+..|||++|+|+..+.
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~s 51 (202)
T 2d6y_A 7 EATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGN 51 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 34677777653 234 69999999999999999987653
No 321
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=90.59 E-value=0.33 Score=39.80 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.6
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+..+|-.+.+ .|++..++|+.+|||++||++|.+
T Consensus 11 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44556666654 699999999999999999999864
No 322
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=90.58 E-value=0.28 Score=38.19 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHH-H-cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVELA-Q-LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L~-~-~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++.. ...|+..+ . .+.+.++||+.++|+++||++.+++..+.|-|.
T Consensus 45 l~~~-~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 45 LTYP-QYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp CCHH-HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHH-HHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 4443 33344443 3 468999999999999999999999999999874
No 323
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=90.54 E-value=0.27 Score=42.47 Aligned_cols=86 Identities=7% Similarity=0.011 Sum_probs=56.6
Q ss_pred HHHHHHHHc----CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCC-HHHHHHHHHHHHhCCCCCHHH
Q psy15598 54 MRIVELAQL----GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTT-PKVVSYIKELKQKDPGIFAWE 128 (258)
Q Consensus 54 ~RIV~L~~~----G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT-~e~~~~I~~lv~~nP~ita~E 128 (258)
.++++.+++ ..+..++|+.+|+|+++++|..++.- |. .+.... ..-......+++ +.+.+..+
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~--g~---------s~~~~~~~~Rl~~a~~~L~-~~~~~i~~ 73 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT--GH---------AIGAYIRARRLSKSAVALR-LTARPILD 73 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH--SS---------CHHHHHHHHHHHHHHHHHH-HCCCCHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHHHHHHHh-cCCCCHHH
Confidence 455555543 47999999999999999999988763 32 111111 111223333343 45788888
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 129 IRDRLLSDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 129 Ir~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
|+..+ |.. |.+...|.+++.-+.
T Consensus 74 ia~~~---Gf~------~~~~f~r~fk~~~g~ 96 (292)
T 1d5y_A 74 IALQY---RFD------SQQTFTRAFKKQFAQ 96 (292)
T ss_dssp HHHHT---TCS------CHHHHHHHHHHHHSS
T ss_pred HHHHc---CCC------CHHHHHHHHHHHHCc
Confidence 87766 665 888999999886655
No 324
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.52 E-value=0.16 Score=40.08 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHH-----c---CCCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELAQ-----L---GIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~~-----~---G~S~~eIAr~LGVSrsTVsRwi 84 (258)
+.+.|.+|++... . +.|.++||+..|||++|+|++.
T Consensus 1 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F 44 (189)
T 3geu_A 1 SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHF 44 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTC
T ss_pred CchHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHh
Confidence 3567888887642 3 4799999999999999998754
No 325
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=90.50 E-value=0.38 Score=37.73 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 54 MRIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 54 ~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+|..+. +.|++..++|+.+|||+++|++|.+
T Consensus 43 ~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 43 YALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444444 3699999999999999999999864
No 326
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=90.47 E-value=0.2 Score=40.59 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
|+|+- ...|.+|++.. +. +.|..+||+..|||++|+|+..+
T Consensus 5 ~~r~~-~~~r~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~ 53 (202)
T 2i10_A 5 GGRRR-GFDDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFG 53 (202)
T ss_dssp --------CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhC
Confidence 45432 23456666643 33 46999999999999999998764
No 327
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=90.44 E-value=0.32 Score=39.05 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=35.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhc
Q psy15598 98 IGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNK 157 (258)
Q Consensus 98 rgG~RPrklT~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~ 157 (258)
..| ||.+++++..+.|..++.. ..++.+|+. ..|+ ||.+||++.|++.
T Consensus 6 k~G-RPtk~t~e~~e~I~~~i~~--G~sl~~i~~---~~~~------ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 6 KAG-RPSDYMPEVADDICSLLSS--GESLLKVCK---RPGM------PDKSTVFRWLAKH 53 (140)
T ss_dssp -----CCSCCTTHHHHHHHHHHT--TCCHHHHHT---STTC------CCHHHHHHHHHHC
T ss_pred CCC-CCCCCCHHHHHHHHHHHHC--CCcHHHHHh---cCCC------CCHHHHHHHHHcC
Confidence 445 9999999999999999876 577777754 3344 5999999999875
No 328
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=90.36 E-value=0.31 Score=38.18 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHH-H--cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CCC-CCCCCCHHHHHHHHHH
Q psy15598 55 RIVELA-Q--LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GGS-KPRVTTPKVVSYIKEL 117 (258)
Q Consensus 55 RIV~L~-~--~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG~-RPrklT~e~~~~I~~l 117 (258)
.|+..+ . .+.+.++||+.++++++||++.+++..+.|-|.-... .++ .--.+|++-.+.+...
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 119 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQA 119 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHH
Confidence 344444 3 4689999999999999999999999999998743221 121 1234777766655444
No 329
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=90.32 E-value=1.3 Score=37.97 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=62.6
Q ss_pred HHHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHHH---------------hh-----------hh--C--Cc-----
Q psy15598 50 NSVRMRIVELA-QLGIRPCDISRQLRVSHGCVSKILAR---------------YH-----------ET--G--SI----- 93 (258)
Q Consensus 50 ~dlR~RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwikR---------------yr-----------Et--G--sl----- 93 (258)
.++-.+|..+. +.|++..++|+.+|||.++|++|++. |. .. | ..
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kraaly~W~~~~~~~i~~~~~~~~~~~~~~~~~~~ 108 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGD 108 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHHHHHHHHHTTTTHHHHCCC------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCccccccccccchhhHHHhhhhhhccccCCCCCCCCCCCccc
Confidence 34445666665 47999999999999999999999752 00 00 0 00
Q ss_pred ccCCCCCCCC-CCCCHHHHHHHHHHHHhCCCC--C-HHHHHHHHH-----hcCCCCC------CCCCCHHHHHHHHHhcc
Q psy15598 94 LPGAIGGSKP-RVTTPKVVSYIKELKQKDPGI--F-AWEIRDRLL-----SDGVCDK------FNVPSVSSISRILRNKI 158 (258)
Q Consensus 94 ~pk~rgG~RP-rklT~e~~~~I~~lv~~nP~i--t-a~EIr~~L~-----~~Gv~v~------~~~pS~STI~RiLrr~~ 158 (258)
.+.....+|. ...+..+...+......++.. . -.+|+..|. +.|+... .+.++...|...+++..
T Consensus 109 ~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 109 ELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp --------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhh
Confidence 1111111122 346788888888887766533 2 345555554 2233211 12268888888886643
No 330
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=90.28 E-value=0.14 Score=44.89 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 54 MRIVELAQ---LGIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 54 ~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
.+|++++. .+++.++||+.+|++++||+|+++...+.|-+.-
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~ 70 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS 70 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45666653 3689999999999999999999999999998743
No 331
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=90.27 E-value=0.24 Score=40.59 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=29.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 5899999999999999999999999999874
No 332
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=90.27 E-value=0.4 Score=37.24 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 6 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 6 KTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFK 50 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcC
Confidence 456778888764 234 7999999999999999997643
No 333
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=90.27 E-value=0.31 Score=40.10 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++..+||..+|+|+.||+|.++++++.|.+.-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 68999999999999999999999999998753
No 334
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=90.25 E-value=0.14 Score=42.32 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 44 NGRPLPNSVRMRIVELAQLG--IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
+.......+|..+......| ++..+||+.++||+..|.+++++-++.|-+..
T Consensus 7 is~k~~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s 60 (162)
T 3k69_A 7 MKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTG 60 (162)
T ss_dssp CTHHHHHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 33445555665444433333 69999999999999999999999999998753
No 335
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=90.21 E-value=0.44 Score=37.75 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (220)
T 3lhq_A 12 ALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFK 56 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhcC
Confidence 456788888754 344 6999999999999999998643
No 336
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=90.21 E-value=0.25 Score=40.06 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|-+.
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5899999999999999999999999999885
No 337
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=90.21 E-value=0.25 Score=40.05 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=29.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6899999999999999999999999999885
No 338
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=90.19 E-value=0.18 Score=44.71 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=33.6
Q ss_pred HHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 54 MRIVELAQ---LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 54 ~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+|++++. .+++.+|||+.+|++++||+|+++...+.|-+.
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 55777764 258999999999999999999999999999875
No 339
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=90.14 E-value=0.23 Score=40.64 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=29.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++..+||..+|+|+.||+|.++++++.|-+.-
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe
Confidence 47899999999999999999999999998743
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=90.11 E-value=0.38 Score=39.67 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhC-CCCCHHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHhccCCCCC
Q psy15598 106 TTPKVVSYIKELKQKD-PGIFAWEIRDRLLSD--GVCDKFNVPSVSSISRILRNKIGSSIV 163 (258)
Q Consensus 106 lT~e~~~~I~~lv~~n-P~ita~EIr~~L~~~--Gv~v~~~~pS~STI~RiLrr~~~~~~~ 163 (258)
+|+. +..|.+.+.+. ...++.||.+.|.+. +..+ |.+||+|.|..+.....-
T Consensus 31 ~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i-----s~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 31 YTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV-----GIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp CCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC-----CHHHHHHHHHHHHHTTSE
T ss_pred CCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC-----CHHHHHHHHHHHHHCCCE
Confidence 4554 56666666654 468999999999876 6664 999999999987766553
No 341
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=90.08 E-value=0.39 Score=37.19 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH-----cC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQ-----LG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~-----~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.+|++... .| .|.++||+..|||++|+|+...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFE 46 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcC
Confidence 56777777642 34 6999999999999999998743
No 342
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=90.07 E-value=0.35 Score=38.82 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 8 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~ 52 (197)
T 2f07_A 8 TSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFS 52 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCC
Confidence 346677787754 234 6999999999999999998753
No 343
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=90.05 E-value=0.28 Score=43.52 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQK 120 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~ 120 (258)
.+.++||+.+|||++||+|.++.. + ..+++.+++|.+..++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~~---------------~-~Vs~~tr~rV~~~a~~ 50 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNRP---------------E-QLSAELRQRILDTAED 50 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHCG---------------G-GSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHCCC---------------C-CCCHHHHHHHHHHHHH
Confidence 578999999999999999999742 1 2567788888888775
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=90.04 E-value=0.37 Score=39.05 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCC
Q psy15598 105 VTTPKVVSYIKELKQKD--PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSI 162 (258)
Q Consensus 105 klT~e~~~~I~~lv~~n--P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~ 162 (258)
++|+. +..|.+++.+. ..+++.||.+.|.+.+..+ |.+||+|.|+.+.....
T Consensus 14 r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i-----s~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 14 KVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEI-----GLATVYRVLNQFDDAGI 67 (150)
T ss_dssp CCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHTTS
T ss_pred CCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHCCc
Confidence 35554 55666666543 3689999999999877664 99999999998766654
No 345
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=90.02 E-value=0.3 Score=42.97 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.++||+.+|||++||+|.++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 68999999999999999998864
No 346
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=89.99 E-value=0.31 Score=40.19 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++..+||..+|+|+.||+|.++++++.|-+.-
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 58999999999999999999999999998853
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.99 E-value=0.34 Score=38.76 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHc---CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQL---GIRPCDISRQL-----RVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~~---G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl 93 (258)
..|..|++.+.+ .+|..+|.+.| +||.+||||-++.+.+.|.+
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 468888888753 37999999998 79999999999999999976
No 348
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=89.97 E-value=0.31 Score=38.44 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 8 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 52 (203)
T 3b81_A 8 NFNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYF 52 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHHc
Confidence 3467888888864 234 799999999999999998743
No 349
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=89.91 E-value=0.33 Score=38.17 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcC
Confidence 3566776653 334 6999999999999999998643
No 350
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=89.87 E-value=0.35 Score=39.15 Aligned_cols=43 Identities=21% Similarity=0.467 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHc----CCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQL----GIRPCDISRQL-----RVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~~----G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl 93 (258)
..|..|++.+.+ .+|..+|.+.| +||.+||||-++.+.+.|.|
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 467788888742 37999999999 89999999999999999976
No 351
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=89.86 E-value=0.27 Score=40.31 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 168 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 6899999999999999999999999999874
No 352
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=89.84 E-value=0.46 Score=37.53 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=38.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC--CCCCC-CCCCCCHHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPG--AIGGS-KPRVTTPKVVSYIKEL 117 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk--~rgG~-RPrklT~e~~~~I~~l 117 (258)
+++.++||+.++|+++||.+.+++..+.|-|.-. +..++ .--.+|++=.+.+.+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 4899999999999999999999999999987422 22221 1233677655555443
No 353
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=89.82 E-value=0.24 Score=39.98 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5899999999999999999999999999874
No 354
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=89.79 E-value=0.22 Score=40.17 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2xdn_A 10 QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhC
Confidence 46788888764 234 6999999999999999998754
No 355
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=89.78 E-value=0.027 Score=45.90 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 49 PNSVRMRIVELAQLG--IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 49 S~dlR~RIV~L~~~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
-.+++.+|+..+..| ++..++|+.||||++||++-+++..+.|.+
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli 57 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFI 57 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 345677888876644 799999999999999999999999999965
No 356
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.76 E-value=0.54 Score=33.53 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHhC----CCHHHHHHHHHHhhhhCCcc
Q psy15598 48 LPNSVRMRIVELAQ--LGIRPCDISRQLR----VSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 48 ~S~dlR~RIV~L~~--~G~S~~eIAr~LG----VSrsTVsRwikRyrEtGsl~ 94 (258)
++. .+..|+..+. .+.+..+|++.|+ ++.+||++.+++..+.|-|.
T Consensus 7 lt~-~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 7 ISD-AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCH-HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCH-HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 444 3445666553 3589999999997 79999999999999999874
No 357
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=89.75 E-value=0.36 Score=38.85 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.+.|.+|++.. +.| .|..+||+..|||++|||+..
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F 50 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHF 50 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTS
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHC
Confidence 4678888888864 234 699999999999999999853
No 358
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=89.74 E-value=0.5 Score=36.06 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.4
Q ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 60 AQLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 60 ~~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
-+.|++..++|+.+|||++||++|.+
T Consensus 24 ~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 24 FLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34799999999999999999999974
No 359
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=89.73 E-value=0.28 Score=40.26 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=29.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++..+||..+|+|+.||+|.++++++.|.+.-
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 69999999999999999999999999998743
No 360
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=89.72 E-value=0.32 Score=32.08 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCCCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHh
Q psy15598 102 KPRVTT--PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRN 156 (258)
Q Consensus 102 RPrklT--~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr 156 (258)
++..++ ++..+.|..+..+ ..+..||++.|. +|.+||++.|++
T Consensus 10 ~~~~l~~~~~~~~~i~~l~~~--g~s~~eIA~~lg----------is~~TV~~~l~~ 54 (55)
T 2x48_A 10 VRYYVESEDDLVSVAHELAKM--GYTVQQIANALG----------VSERKVRRYLES 54 (55)
T ss_dssp EEEEECSHHHHHHHHHHHHHT--TCCHHHHHHHHT----------SCHHHHHHHHTC
T ss_pred HHHHHhcCHHHHHHHHHHHHc--CCCHHHHHHHHC----------cCHHHHHHHHHh
Confidence 555677 7777777777543 579999988883 499999999864
No 361
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=89.70 E-value=0.31 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=29.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 6899999999999999999999999999874
No 362
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=89.69 E-value=0.52 Score=37.41 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+..+
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 4568888888854 334 6999999999999999998644
No 363
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=89.64 E-value=0.41 Score=39.07 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
++-.|+.++...- +..++|+.+|||++||++|.+
T Consensus 9 ~~~~rl~~~r~~~-tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 9 DVLDRICEAYGFS-QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CHHHHHHHhCcCHHHHHHHHh
Confidence 4555666665444 999999999999999999987
No 364
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=89.58 E-value=0.5 Score=37.77 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=28.3
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~ 51 (204)
T 3anp_C 8 KRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYP 51 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcC
Confidence 35677787754 235 6999999999999999998643
No 365
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.56 E-value=0.21 Score=40.04 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCCCC
Q psy15598 105 VTTPKVVSYIKELKQKD-PGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIV 163 (258)
Q Consensus 105 klT~e~~~~I~~lv~~n-P~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~~~ 163 (258)
++|+ ++..|.+++.+. ..+++.||.+.|++.+..+ |.+||+|.|..+....+-
T Consensus 11 r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i-----s~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 11 RATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAV-----GLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHTTSS
T ss_pred ccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHCCCE
Confidence 3444 466677776654 3689999999999877664 999999999987666543
No 366
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=89.55 E-value=0.37 Score=38.21 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|++|++.. +. +.|.++||+..|||++|||+...
T Consensus 17 ~~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 60 (212)
T 3loc_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCC
Confidence 35788888754 23 57999999999999999998754
No 367
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.53 E-value=0.66 Score=38.71 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.|.++||+.||+|.+||++++++-.+.|.+.
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 7999999999999999999999999999874
No 368
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=89.50 E-value=0.51 Score=39.40 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=29.7
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHHhhhhCCccc
Q psy15598 63 GIRPCDISRQLRVSHG-CVSKILARYHETGSILP 95 (258)
Q Consensus 63 G~S~~eIAr~LGVSrs-TVsRwikRyrEtGsl~p 95 (258)
.++..+||..+|+|++ ||+|.++++++.|.|.-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe
Confidence 5788999999999995 99999999999998743
No 369
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=89.50 E-value=0.38 Score=36.84 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=25.2
Q ss_pred HHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 56 IVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 56 IV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
|-.+. ..|++..++|+.+|||++||++|.+
T Consensus 28 Lk~~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 28 LKELRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 33443 4799999999999999999999975
No 370
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=89.50 E-value=0.31 Score=48.18 Aligned_cols=97 Identities=9% Similarity=-0.051 Sum_probs=32.5
Q ss_pred HHHHHH-Hc-CCCHHHHHHHhCCCHHHHHHHHHHhhh-----hCCcccCCC-----------CCC---C------CCCCC
Q psy15598 55 RIVELA-QL-GIRPCDISRQLRVSHGCVSKILARYHE-----TGSILPGAI-----------GGS---K------PRVTT 107 (258)
Q Consensus 55 RIV~L~-~~-G~S~~eIAr~LGVSrsTVsRwikRyrE-----tGsl~pk~r-----------gG~---R------PrklT 107 (258)
.|+.++ ++ .++..++|+.|++|..+|.+.+++..+ .|.++.... -+. + -+.+.
T Consensus 434 ~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (583)
T 3lmm_A 434 IVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLSTD 513 (583)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC-------------
T ss_pred HHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhcccccccccccccccCC
Confidence 455544 44 489999999999999999999999998 444432100 000 0 00011
Q ss_pred -HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCC
Q psy15598 108 -PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSS 161 (258)
Q Consensus 108 -~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~ 161 (258)
...++.|.++++++..++..+|++.+. +|..+++|+|+++..+.
T Consensus 514 ~~~~~~~I~~~l~~~g~it~~di~~l~~----------ls~~qa~~~L~~Lv~~G 558 (583)
T 3lmm_A 514 QAELTNAAMLWLSEVGDLATSDLMAMCG----------VSRGTAKACVDGLVDEE 558 (583)
T ss_dssp -------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHcCCcCHHHHHHHHC----------CCHHHHHHHHHHHHHCC
Confidence 123456888888888888888887663 38889999998877664
No 371
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=89.47 E-value=0.5 Score=45.30 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-|...+- +|+|..+||+.||||+.+|+.++.|-.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAl 420 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 420 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 366666655555554 789999999999999999999998875
No 372
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=89.43 E-value=0.22 Score=39.75 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=38.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC--CC-CCCCCCCHHHHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAI--GG-SKPRVTTPKVVSYIKELKQ 119 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r--gG-~RPrklT~e~~~~I~~lv~ 119 (258)
+++..+||+.++|+++||++.+++..+.|-|.-... .+ ..--.+|++-.+.+.+...
T Consensus 62 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 62 GMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp CEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 789999999999999999999999999998742221 11 0123477776666655543
No 373
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=89.40 E-value=0.18 Score=43.77 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=42.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCC-CCCCCCCCCHHHH---HHHHHHHHhCCCCCHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAI-GGSKPRVTTPKVV---SYIKELKQKDPGIFAWEIRDRLL 134 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~r-gG~RPrklT~e~~---~~I~~lv~~nP~ita~EIr~~L~ 134 (258)
++..++|+.+|||.+|++.| .+.|.+.|..+ ....-|..++++. ..|..++.. .+++.+|++.|.
T Consensus 6 ~~i~e~a~~~gvs~~tlr~y----~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~--g~~l~~i~~~~~ 74 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYY----DKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYI--GTPLEEMKKAQD 74 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHH----HHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHT--TCCHHHHHHHTT
T ss_pred EeHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 68899999999999999866 44588876544 2112344554433 444444333 678888877663
No 374
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=89.39 E-value=0.33 Score=38.04 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.++||+..|||++|+|+..+
T Consensus 22 ~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 22 ATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHTS
T ss_pred cCCHHHHHHHhCCCchhHHHhCC
Confidence 47999999999999999998643
No 375
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=89.38 E-value=0.48 Score=39.13 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..++-..+.|.+|++.. +.| .|.++||+..|||++|||+..+
T Consensus 37 ~~~~~~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~ 86 (236)
T 3q0w_A 37 TARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFP 86 (236)
T ss_dssp -----CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCC
Confidence 45556778898988864 345 6999999999999999998644
No 376
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=89.37 E-value=0.3 Score=38.09 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=26.9
Q ss_pred HHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.+|++.. +.| .|.++||+..|||++|+|+..+
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 4566666653 344 6999999999999999998643
No 377
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=89.33 E-value=0.35 Score=37.94 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.|.+|++.. +.| .|.++||+..|||++|+|+..+.
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (206)
T 3dew_A 7 ADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGG 51 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 35677777753 234 79999999999999999987543
No 378
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=89.33 E-value=0.23 Score=37.58 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHh
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 87 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRy 87 (258)
.+|+..+ .-++.+.||+.+||+.+||+||..-+
T Consensus 16 s~iL~~L-a~~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 16 SALLNKI-AMLGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHHHHH-HHHCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHH-HHHhhHHHHHHhCCCHHHHhhhhhhH
Confidence 3343333 34788999999999999999998865
No 379
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=89.32 E-value=0.58 Score=37.63 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHh-----CCCHHHHHHHHHHhhhhCCc
Q psy15598 51 SVRMRIVELAQ--LGIRPCDISRQL-----RVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 51 dlR~RIV~L~~--~G~S~~eIAr~L-----GVSrsTVsRwikRyrEtGsl 93 (258)
..|..|++.+. ...+..+|.+.| +||.+||||-++.+.+.|.+
T Consensus 19 ~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 19 PQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 35777877764 357999999988 79999999999999999975
No 380
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=89.29 E-value=0.28 Score=41.72 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCcccCCCCCCHHHHHHHHHHHH-cC-CCHHHHHHHhCCCHHHHHH
Q psy15598 39 GGVFVNGRPLPNSVRMRIVELAQ-LG-IRPCDISRQLRVSHGCVSK 82 (258)
Q Consensus 39 ~~~~~~gR~~S~dlR~RIV~L~~-~G-~S~~eIAr~LGVSrsTVsR 82 (258)
|.+|.|.+ .+-+++|+++++ +| ++..++|+.|+||..||+|
T Consensus 3 g~~~~m~k---~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRr 45 (190)
T 4a0z_A 3 GETLKLKK---DKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRL 45 (190)
T ss_dssp ----CHHH---HHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred ccccccCH---HHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHH
No 381
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=89.21 E-value=0.57 Score=38.09 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
++...+ +|+.++.+|.+.++||+.+++|.+||...+++-+
T Consensus 155 Lt~rE~-~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~ 194 (215)
T 1a04_A 155 LTPRER-DILKLIAQGLPNKMIARRLDITESTVKVHVKHML 194 (215)
T ss_dssp SCHHHH-HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 565544 5888888999999999999999999999988876
No 382
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=89.19 E-value=0.38 Score=37.37 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccC
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPG 96 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk 96 (258)
.+..+||+.++|++++|+++++..++.|-+...
T Consensus 27 ~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 799999999999999999999999999987543
No 383
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=89.17 E-value=0.33 Score=40.03 Aligned_cols=31 Identities=3% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.+.
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 5899999999999999999999999999874
No 384
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=89.11 E-value=0.57 Score=37.15 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 15 ~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 59 (212)
T 1pb6_A 15 AVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhC
Confidence 3457888888854 334 699999999999999999874
No 385
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=89.06 E-value=0.57 Score=38.82 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...+ +|+.++.+|++.++||+.|++|.+||...+++-+
T Consensus 149 ~LT~rE~-~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~ 189 (225)
T 3c3w_A 149 GLTDQER-TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLL 189 (225)
T ss_dssp TSCHHHH-HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3666554 5888888999999999999999999999988876
No 386
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=89.05 E-value=0.82 Score=39.43 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=64.9
Q ss_pred CCCCCCHHHHHHHHHH-HHcC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15598 44 NGRPLPNSVRMRIVEL-AQLG--IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQK 120 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L-~~~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~ 120 (258)
..|++|.-.|.+--.. .++| .+.+++|+.+|||++.|+|.++-.+=.-.+...- ..|.-++...-+.|......
T Consensus 20 ~~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP~~lv~~f---p~p~dLs~~~~~~L~k~~~~ 96 (189)
T 3mky_B 20 HYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALF---SHPGELSARSGDALQKAFTD 96 (189)
T ss_dssp ---CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTS---SSGGGSCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhcCCHHHHHHc---CCHHhcCchhHHHHHHHHhc
Confidence 4588999888665555 4566 7999999999999999999999876222111110 13455666666666554433
Q ss_pred CCCCCHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHHhccCC
Q psy15598 121 DPGIFAWEIRDRLL---SDGVCDKFNVPSVSSISRILRNKIGS 160 (258)
Q Consensus 121 nP~ita~EIr~~L~---~~Gv~v~~~~pS~STI~RiLrr~~~~ 160 (258)
..+ .+.+...++. +.|+.. +..-|-+.|......
T Consensus 97 ~~~-ll~~~a~~l~e~~~~G~~~-----~~~evi~~L~~~~~~ 133 (189)
T 3mky_B 97 KEE-LLKQQASNLHEQKKAGVIF-----EADEVITLLTSVLKT 133 (189)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHTTSG
T ss_pred cHH-HHHHHHHHHHHHhccCCcC-----CHHHHHHHHHHHHhc
Confidence 332 2333334443 356654 666666666655433
No 387
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=89.00 E-value=4.4 Score=35.61 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=27.6
Q ss_pred HHHHHHHH-HHcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 52 VRMRIVEL-AQLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 52 lR~RIV~L-~~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+-.+|... .+.|++..+||+.+|||.++|++|++
T Consensus 32 ~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 32 AAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 33444443 45799999999999999999999986
No 388
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=88.98 E-value=0.34 Score=40.74 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
++..+||..+|+|+.||+|.++++++.|.|.
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 5899999999999999999999999999875
No 389
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=88.93 E-value=0.46 Score=37.54 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.6
Q ss_pred HHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 52 VRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 52 lR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.|.+|++.. +. +.|..+||+..|||++|+|+..+.
T Consensus 4 tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~s 46 (190)
T 3vpr_A 4 TRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFGS 46 (190)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 455666543 33 469999999999999999987654
No 390
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=88.88 E-value=0.42 Score=38.52 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.+.|.+|++.. +.| .|.++||+..|||++|||+..
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 11 TFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred cchhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhc
Confidence 4567888898864 234 799999999999999999754
No 391
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=88.87 E-value=0.37 Score=38.70 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=23.3
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 61 QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 61 ~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..|++..++|+.+|||+++|++|.+
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999976
No 392
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=88.86 E-value=0.39 Score=40.34 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHhCC
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDP 122 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~nP 122 (258)
.++..+||..+|+|+.||+|.++++++.|-+.-.. + +-.++. .+.+.++....+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~--~-~i~i~d---~~~L~~~a~~~~ 230 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK--N-KIIVYN---LGELKHLSEQTS 230 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS--S-EEEESC---HHHHHHHHTSSC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC--C-EEEEec---HHHHHHHHccCc
Confidence 35999999999999999999999999999885331 1 223343 445556655544
No 393
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=88.83 E-value=0.63 Score=36.54 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 12 RAVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHh
Confidence 345677787754 234 699999999999999999863
No 394
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=88.78 E-value=0.46 Score=36.98 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. +.|.++||+..|||++|+|+..+
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (195)
T 3pas_A 7 DSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYE 50 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcC
Confidence 46778887754 23 47999999999999999998643
No 395
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=88.77 E-value=0.21 Score=38.97 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. +.|.++||+..|||++|+|+...
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (194)
T 2g7s_A 7 QSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFP 50 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred hhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcC
Confidence 46778887753 23 47999999999999999998643
No 396
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=88.74 E-value=0.46 Score=38.61 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHH-----c---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELAQ-----L---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~~-----~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.+.|.+|++... . +.|..+||+..|||++|||+..+
T Consensus 22 ~~~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~yF~ 66 (214)
T 2oer_A 22 SSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFP 66 (214)
T ss_dssp -CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHhCC
Confidence 4567888998753 3 46999999999999999998743
No 397
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=88.72 E-value=0.39 Score=38.72 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
-+...|.+|++.. +.| .|.++||+..|||++|||+..+
T Consensus 6 ~~~~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~ 51 (203)
T 2np5_A 6 YSSTSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFS 51 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccchhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcC
Confidence 3456678888754 344 7999999999999999998743
No 398
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=88.71 E-value=1.1 Score=37.51 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh-hCC-cccCCCCCCCCCCCCHHHHHHH
Q psy15598 55 RIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE-TGS-ILPGAIGGSKPRVTTPKVVSYI 114 (258)
Q Consensus 55 RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE-tGs-l~pk~rgG~RPrklT~e~~~~I 114 (258)
+++..+.+-.|.+++|+.|+||.++|++-+++.++ -|. +-.+ .+ |.-.+|++=+.++
T Consensus 7 ~~f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R--~~-~~~~lT~~G~~l~ 65 (294)
T 1ixc_A 7 KYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLER--SH-RGIELTAAGHAFL 65 (294)
T ss_dssp HHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC--------CCBCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEEe--CC-CCeeECHhHHHHH
Confidence 44555544459999999999999999999999986 443 2222 23 4566776644433
No 399
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=88.68 E-value=0.46 Score=38.14 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+..+
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~ 72 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFR 72 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCC
Confidence 456788888764 244 6999999999999999998753
No 400
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=88.65 E-value=0.47 Score=38.95 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+....
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 83 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGT 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 346788888754 234 79999999999999999987654
No 401
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=88.62 E-value=0.6 Score=34.30 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHH----HHHHH
Q psy15598 55 RIVELA-QLGIRPCDISRQLRVSHGC----VSKIL 84 (258)
Q Consensus 55 RIV~L~-~~G~S~~eIAr~LGVSrsT----VsRwi 84 (258)
+|-.+. ..|++..++|+.+|||++| |++|.
T Consensus 5 ~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E 39 (98)
T 3lfp_A 5 RLKDARLRAGISQEKLGVLAGIDEASASARMNQYE 39 (98)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHH
Confidence 344443 4799999999999999999 55554
No 402
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=88.60 E-value=0.59 Score=37.22 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+...
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 50 (199)
T 2o7t_A 7 LKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFP 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcC
Confidence 45677787754 344 6999999999999999998754
No 403
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=88.60 E-value=1.1 Score=37.56 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh-hCC-cccCCCCCCCCCCCCHHHHHHH
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE-TGS-ILPGAIGGSKPRVTTPKVVSYI 114 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE-tGs-l~pk~rgG~RPrklT~e~~~~I 114 (258)
.+++..+.+-.|.+++|+.|+||.++|++-+++.++ -|. +-.+ .+ +.-.+|++-+.++
T Consensus 8 l~~f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R--~~-~~~~lT~~G~~l~ 67 (306)
T 3hhg_A 8 LTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNR--TT-RQLSLTEEGAQYF 67 (306)
T ss_dssp HHHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEET--TS-SSCEECHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEee--cC-CCeeECHhHHHHH
Confidence 345555556669999999999999999999999986 453 2222 23 5567777644433
No 404
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=88.54 E-value=0.41 Score=40.80 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++..+||..+|+|+.||+|.++++++.|.|.-
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 249 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLISA 249 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 57899999999999999999999999998753
No 405
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=88.54 E-value=0.66 Score=37.07 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH-----cC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-----LG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 50 ~dlR~RIV~L~~-----~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.|.+|++... .| .|.++||+..|||++|||+..+.
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 60 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGS 60 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 457888888643 34 69999999999999999987643
No 406
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=88.50 E-value=0.25 Score=41.71 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 52 VRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 52 lR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
+..+|-.+.+ .|++.+++|+.+|||++||++|.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3444555543 5999999999999999999999753
No 407
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=88.49 E-value=0.21 Score=43.79 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 53 RMRIVELAQ---LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 53 R~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
-.+|++++. .+++.++||+.+|++++||+|+++...+.|-+.
T Consensus 23 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~ 67 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA 67 (265)
T ss_dssp HHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 346777653 368999999999999999999999999999774
No 408
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=88.45 E-value=0.63 Score=36.96 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 345677777754 245 6999999999999999998644
No 409
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=88.40 E-value=0.67 Score=37.11 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. +.|..+||+..|||++|+|+..+
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 13 SGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred chhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 46788888754 23 46999999999999999998653
No 410
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=88.40 E-value=0.45 Score=39.75 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHH-----cC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 44 NGRPLPNSVRMRIVELAQ-----LG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 44 ~gR~~S~dlR~RIV~L~~-----~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
++++-..+.|.+|++... .| .+.++||+..|||++|+|+..+
T Consensus 36 ~~~~~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~ 85 (255)
T 3g1o_A 36 TARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFP 85 (255)
T ss_dssp -----CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcC
Confidence 344456678888888653 34 6999999999999999998643
No 411
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=88.39 E-value=1.8 Score=34.22 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=37.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCC-CCC-CCCCCCCHHHHHHHHHHH
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGA-IGG-SKPRVTTPKVVSYIKELK 118 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~-rgG-~RPrklT~e~~~~I~~lv 118 (258)
++.++||+.++|+++||++.+++..+.|-|+-.. ..+ .+--.+|++=.+.+.+..
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~~ 109 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAV 109 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHHH
Confidence 7999999999999999999999999999773211 111 123457777666655543
No 412
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=88.38 E-value=0.7 Score=36.29 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 6 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 6 QAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 456788888764 334 6999999999999999998643
No 413
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=88.37 E-value=0.5 Score=39.98 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=25.7
Q ss_pred HHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 55 RIVELA-QLGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 55 RIV~L~-~~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+|.++. +.|+|..++|+.||||++|+++|-+
T Consensus 94 ~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 94 MFGDWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 455555 4699999999999999999988754
No 414
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=88.32 E-value=0.6 Score=33.15 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
...+..++|+.+|||++||++|.+
T Consensus 26 ~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 26 GDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHc
Confidence 334999999999999999999864
No 415
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=88.32 E-value=0.54 Score=36.78 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..+.|.+|++.. +. +.|.++||+..|||++|+|+..+.
T Consensus 5 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (186)
T 2jj7_A 5 REQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNG 50 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhhcCC
Confidence 356777777753 23 489999999999999999997653
No 416
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=88.31 E-value=0.69 Score=36.92 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. |.|.++||+..|||++|+|+..+
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 52 (194)
T 2nx4_A 9 DERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFA 52 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCc
Confidence 45678888764 23 46999999999999999998753
No 417
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=88.26 E-value=0.38 Score=37.78 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
-..+.|.+|++.. +. +.|..+||+..|||++|+|++...
T Consensus 11 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 57 (191)
T 4aci_A 11 KPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGD 57 (191)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCCC
Confidence 3446777777753 23 479999999999999999987653
No 418
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=88.22 E-value=0.77 Score=38.26 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|||+..
T Consensus 20 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F 64 (231)
T 2zcx_A 20 AKQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRYF 64 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhC
Confidence 4567788888764 234 799999999999999999864
No 419
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=88.15 E-value=0.41 Score=37.65 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHH-----HcC--CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG--IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G--~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|.++||+..|||++|||+..+
T Consensus 7 ~~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 7 KQSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cchHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHHcC
Confidence 456777887754 235 6999999999999999998643
No 420
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=88.11 E-value=0.33 Score=41.43 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=38.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~l 117 (258)
|.+.+++|+.|++|++||++.+++..+.|-+.-.+.++.+.-.+|++=+.++...
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 3679999999999999999999999998866322111113345777655555443
No 421
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=88.03 E-value=0.4 Score=37.35 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
+.+.|.+|++.. +. +.|.++||+..|||++|+|+....
T Consensus 12 ~~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 12 TEITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hHhHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 456788888754 23 479999999999999999987543
No 422
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=88.02 E-value=0.65 Score=37.68 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|..+||+..|||++|+|+...
T Consensus 20 ~~~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 20 QRARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 446788888764 345 6999999999999999998754
No 423
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=87.99 E-value=0.25 Score=39.72 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHh-cCCCCCCCCCCHHHHHHHHHhccC
Q psy15598 103 PRVTTPKVVSYIKELK-QKDPGIFAWEIRDRLLS-DGVCDKFNVPSVSSISRILRNKIG 159 (258)
Q Consensus 103 PrklT~e~~~~I~~lv-~~nP~ita~EIr~~L~~-~Gv~v~~~~pS~STI~RiLrr~~~ 159 (258)
...+|.++...|.++. +++|.++..+|+.+..+ +|.. ||.+||+++|++...
T Consensus 9 R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~-----is~stis~ilk~k~~ 62 (144)
T 1iuf_A 9 RRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKD-----ISQPSVSQILSSKYS 62 (144)
T ss_dssp SSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSC-----CSSSSTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCC-----CcHHHHHHHHhhHHH
Confidence 3568888899999998 78999999999998874 6554 499999999998543
No 424
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=87.94 E-value=0.59 Score=36.98 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..+.|.+|++.. +. +.|.++||+..|||++|+|+..+.
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 446777777754 23 479999999999999999987643
No 425
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=87.88 E-value=0.55 Score=36.97 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +. +.|.++||+..|||++|+|+...
T Consensus 18 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 62 (203)
T 3mnl_A 18 QRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFP 62 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHcC
Confidence 356788888754 23 47999999999999999998643
No 426
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=87.88 E-value=0.32 Score=38.96 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 54 (197)
T 2hyt_A 10 MEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFG 54 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 346778888754 334 6999999999999999998754
No 427
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=87.81 E-value=0.51 Score=36.71 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.+|++.. +. +.|.++||+..|||++|+|+..+
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 5677777653 33 47999999999999999998643
No 428
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=87.78 E-value=0.61 Score=37.93 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|.++||+..|||++|||+...
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 51 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFG 51 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhcCC
Confidence 46788888764 334 7999999999999999998753
No 429
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=87.78 E-value=0.48 Score=41.81 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHET 90 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEt 90 (258)
++...|.-++..+.+|++..+||..+|++.+||..++.+-+..
T Consensus 112 Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~~ 154 (286)
T 3n0r_A 112 IAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAE 154 (286)
T ss_dssp HSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 4556666555556699999999999999999999999887643
No 430
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=87.75 E-value=0.62 Score=36.43 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.|.+|++.. +. +.|.++||+..|||++|+|+..
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F 48 (199)
T 3qbm_A 6 QETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHF 48 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhC
Confidence 46777777754 23 4799999999999999999753
No 431
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=87.73 E-value=0.11 Score=45.78 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 48 LPNSVRMRIVELAQL-GIRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~-G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++...|.+|+.+... .++..+||+.+|+|++||++-++...+.|-|..
T Consensus 9 L~~~~R~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 9 LGNKVRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HTSHHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456788999988765 489999999999999999999999999997743
No 432
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=87.72 E-value=0.88 Score=38.53 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh-hCC-cccCCCCCCCCCCCCHHHHHHHH
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE-TGS-ILPGAIGGSKPRVTTPKVVSYIK 115 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE-tGs-l~pk~rgG~RPrklT~e~~~~I~ 115 (258)
.+++..+.+-.|.+++|+.|+||.++|++-+++.++ -|. +-. |.+ |.-.+|++=+.++.
T Consensus 15 L~~f~~v~~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~--R~~-~~~~lT~~G~~l~~ 75 (310)
T 2esn_A 15 LLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFL--RQG-NRMQPTQRAEHLAA 75 (310)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEE--EET-TEEEECHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHhhCCccee--ecC-CCccccHHHHHHHH
Confidence 345555545559999999999999999999999986 443 222 223 45667776544443
No 433
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=87.64 E-value=0.39 Score=39.12 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|.++||+..|||++|+|+..+
T Consensus 4 ~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 47 (228)
T 3nnr_A 4 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 47 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhcCC
Confidence 35677777653 234 7999999999999999998643
No 434
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=87.60 E-value=0.51 Score=38.21 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 7 ~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~ 50 (206)
T 1vi0_A 7 RPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFK 50 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 35677777653 344 6999999999999999998743
No 435
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=87.59 E-value=0.78 Score=37.74 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +. +.|.++||+..|||++|+|+..+
T Consensus 41 ~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~ 85 (229)
T 3bni_A 41 SAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFG 85 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcC
Confidence 457788888754 23 47999999999999999998654
No 436
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=87.53 E-value=0.38 Score=38.83 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+....
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSC
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCC
Confidence 457788888754 334 79999999999999999987543
No 437
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.50 E-value=0.68 Score=34.95 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHH--HcCCCHHHHHHHhC----CCHHHHHHHHHHhhhhCCccc
Q psy15598 48 LPNSVRMRIVELA--QLGIRPCDISRQLR----VSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 48 ~S~dlR~RIV~L~--~~G~S~~eIAr~LG----VSrsTVsRwikRyrEtGsl~p 95 (258)
++... ..|+..+ ..+.+..+||+.++ ++++||++.+++..+.|-|.-
T Consensus 8 lt~~~-~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r 60 (123)
T 1okr_A 8 ISSAE-WEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDR 60 (123)
T ss_dssp CCHHH-HHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHH-HHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEE
Confidence 44432 3344443 35799999999999 899999999999999998743
No 438
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=87.45 E-value=0.75 Score=36.92 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=29.5
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.|.+|++.. +.| .|.++||+..|||++|+|+..+.
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 35677887753 234 79999999999999999998654
No 439
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=87.45 E-value=0.55 Score=37.61 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 6 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 6 SSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 34577777653 345 6999999999999999998753
No 440
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=87.40 E-value=0.43 Score=37.20 Aligned_cols=36 Identities=8% Similarity=0.249 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 51 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYF 51 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHh
Confidence 356677777754 234 799999999999999999753
No 441
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=87.34 E-value=0.43 Score=39.44 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=27.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
++..+||..+|+|+.||+|.++++++.| +
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V 207 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e
Confidence 4689999999999999999999999999 5
No 442
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=87.34 E-value=0.26 Score=39.54 Aligned_cols=36 Identities=19% Similarity=0.480 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. +.|.++||+..|||++|+|+...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~ 53 (212)
T 2ras_A 10 DAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFE 53 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCS
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 56788888754 23 47999999999999999998643
No 443
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=87.32 E-value=0.57 Score=36.24 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH-----cC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 50 NSVRMRIVELAQ-----LG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 50 ~dlR~RIV~L~~-----~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.|.+|++... .| .|.++||+..|||++|+|+..
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp HHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHc
Confidence 467778887653 34 699999999999999998754
No 444
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=87.25 E-value=0.58 Score=36.98 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHH-----c---CCCHHHHHHHhCCCHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELAQ-----L---GIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~-----~---G~S~~eIAr~LGVSrsTVsRwi 84 (258)
.-..+.|.+|++... . +.|.++||+..|||++|+|+..
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 55 (215)
T 3e7q_A 10 LEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHY 55 (215)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHc
Confidence 345677888888642 3 5799999999999999999874
No 445
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=87.23 E-value=0.33 Score=39.07 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
++..+||+.++|++.+|.+++.+.++.|-|..
T Consensus 29 ~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 29 ISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 68999999999999999999999999998753
No 446
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=87.17 E-value=0.47 Score=38.17 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhhhhCCccc
Q psy15598 64 IRPCDISRQLRVSHGCVSKILARYHETGSILP 95 (258)
Q Consensus 64 ~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~p 95 (258)
.+.++||+.++||.++|.+++.+.++.|-|..
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s 62 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYLKQAGFVYV 62 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 79999999999999999999999999998753
No 447
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=87.17 E-value=0.86 Score=35.63 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHH------cCCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELAQ------LGIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~~------~G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..+.|.+|++... .+.|..+||+..|||++|+|+..+.
T Consensus 12 ~~~~r~~Il~aA~~lf~~~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 12 RERTRRAILDAAMLVLADHPTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp -CHHHHHHHHHHHHHHTTCTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3467788887542 5789999999999999999987543
No 448
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=87.16 E-value=0.37 Score=37.82 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKI 83 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRw 83 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+.
T Consensus 9 ~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 51 (196)
T 3he0_A 9 AVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRY 51 (196)
T ss_dssp --CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHh
Confidence 345566666643 234 79999999999999999864
No 449
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=87.16 E-value=0.6 Score=37.43 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 11 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF 53 (205)
T 1rkt_A 11 DKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYF 53 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhC
Confidence 46778888764 234 699999999999999999753
No 450
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=87.14 E-value=0.56 Score=37.63 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.+|++.. +. +.|.++||+..|||++|+|+...
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~ 45 (212)
T 3rh2_A 3 KTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFR 45 (212)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 3466666643 33 47999999999999999998643
No 451
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.10 E-value=0.89 Score=39.43 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHc--C--CCHHHHHHHhCCCHHHHHHHHHHhhh-hCCcccCCCCCCCCCCCCHHHHHHH
Q psy15598 47 PLPNSVRMRIVELAQL--G--IRPCDISRQLRVSHGCVSKILARYHE-TGSILPGAIGGSKPRVTTPKVVSYI 114 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~~--G--~S~~eIAr~LGVSrsTVsRwikRyrE-tGsl~pk~rgG~RPrklT~e~~~~I 114 (258)
.++...|..|..+.+. | .+..++|+.||+|++|+++++++|.. .|-+... + +.+++++....++
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~---~-~g~~~~~~~~~~~ 312 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRT---P-RGRVPTELAYRHL 312 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEE---T-TEEEECHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcC---C-ccceecHHHHHHH
Confidence 3555566666555542 2 46999999999999999999999764 4444322 1 3367777666654
No 452
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=87.05 E-value=1.4 Score=33.82 Aligned_cols=47 Identities=30% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccC
Q psy15598 103 PRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIG 159 (258)
Q Consensus 103 PrklT~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~ 159 (258)
.+.++.+.+..|++++.+++..+..+++..+ | ||.+||+++|+....
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~---g-------vs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRF---N-------IPPSTLSTILKNKRA 51 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHH---T-------CCHHHHHHHHHTHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHh---C-------CCHHHHHHHHhchhh
Confidence 3568999999999988777777777888776 4 499999999987543
No 453
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=87.02 E-value=0.57 Score=37.60 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHHHHc-CCCHHHHHHHh-CCCHHHHHHHHHHhhhhCCcc
Q psy15598 53 RMRIVELAQL-GIRPCDISRQL-RVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 53 R~RIV~L~~~-G~S~~eIAr~L-GVSrsTVsRwikRyrEtGsl~ 94 (258)
+..|+..... .++..++++.+ |||.+++++-+++..+.|-|.
T Consensus 28 ~l~IL~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~ 71 (131)
T 4a5n_A 28 KGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVH 71 (131)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEE
Confidence 5556655544 58999999999 999999999999999999875
No 454
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=86.96 E-value=0.54 Score=44.46 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 47 PLPNSVRMRIVELAQ----LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 47 ~~S~dlR~RIV~L~~----~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.++...|.-|...+- +|+|..+||+.||||+.||+.+..+-.
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl 405 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKAL 405 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 366666655555555 789999999999999999999988764
No 455
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=86.95 E-value=0.74 Score=37.38 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. +.|..+||+..|||++|+|+..+
T Consensus 2 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtlY~hF~ 45 (208)
T 2g3b_A 2 SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFK 45 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 35677777643 23 57999999999999999998754
No 456
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=86.73 E-value=0.32 Score=39.38 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F 52 (219)
T 2w53_A 10 QATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHF 52 (219)
T ss_dssp GCCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhhcC
Confidence 34577777653 334 699999999999999999754
No 457
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=86.72 E-value=0.32 Score=40.63 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +. +.|.++||+..|||++|||+...
T Consensus 17 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~ 60 (251)
T 3npi_A 17 EVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFG 60 (251)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHHHcC
Confidence 34566666643 23 47999999999999999998764
No 458
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=86.63 E-value=0.13 Score=46.99 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 52 VRMRIVELA--QLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 52 lR~RIV~L~--~~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.|..|+..+ .++++.++||+.|+||++||+|.+++.++.|.+.
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345566654 3679999999999999999999999999999874
No 459
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=86.59 E-value=0.42 Score=41.83 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=34.9
Q ss_pred HHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcc
Q psy15598 54 MRIVELAQ---LGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94 (258)
Q Consensus 54 ~RIV~L~~---~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~ 94 (258)
.+|++++. .+++.+|||+.+|++++||+|+++...+.|-+.
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~ 52 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVE 52 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45666653 358999999999999999999999999999875
No 460
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=86.59 E-value=0.47 Score=37.30 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKI 83 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRw 83 (258)
..+.|.+|++.. +. +.|.++||+..|||++|+|+.
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~ 51 (204)
T 3eup_A 9 SDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGN 51 (204)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHh
Confidence 567888888754 23 479999999999999999875
No 461
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=86.56 E-value=1.2 Score=33.51 Aligned_cols=44 Identities=11% Similarity=0.319 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHH-cC--CCHHHHHHHhCCCHHHHHHHHHHhhhhCCc
Q psy15598 50 NSVRMRIVELAQ-LG--IRPCDISRQLRVSHGCVSKILARYHETGSI 93 (258)
Q Consensus 50 ~dlR~RIV~L~~-~G--~S~~eIAr~LGVSrsTVsRwikRyrEtGsl 93 (258)
.+..++|++.++ .| ++..+||+.+||.+.-|.+.+++.+..|.|
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 467899999886 45 688999999999999999999999999976
No 462
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=86.54 E-value=0.93 Score=35.93 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 23 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 67 (217)
T 3mvp_A 23 RSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYF 67 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHc
Confidence 3457788888764 234 799999999999999999854
No 463
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.51 E-value=0.5 Score=42.10 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+....|..|...++ .|...+++|+.||||++|+|+.++
T Consensus 265 ~~~~e~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 265 LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 33456777777776 477999999999999999999875
No 464
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=86.47 E-value=0.33 Score=38.83 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF 55 (203)
T 3ccy_A 11 DYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYF 55 (203)
T ss_dssp -CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTC
T ss_pred hhhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeee
Confidence 3456788888843 344 699999999999999998754
No 465
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=86.47 E-value=0.7 Score=37.71 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.+.|.+|++.. +.| .|..+||+..|||++|+|+..+
T Consensus 7 ~~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~ 51 (215)
T 1ui5_A 7 AEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFA 51 (215)
T ss_dssp TTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHhhCC
Confidence 456778887754 234 6999999999999999998644
No 466
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=86.43 E-value=0.48 Score=37.75 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.+.+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 10 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 54 (217)
T 3nrg_A 10 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 54 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTC
T ss_pred ChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHc
Confidence 3678899998864 345 799999999999999998754
No 467
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=86.38 E-value=0.87 Score=36.14 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=26.0
Q ss_pred HHHHHHHH----H-HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 52 VRMRIVEL----A-QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 52 lR~RIV~L----~-~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.|.+|++. + +.| .|.++||+..|||++|+|++..
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCc
Confidence 45556554 3 344 6999999999999999998754
No 468
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=86.33 E-value=0.73 Score=36.74 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 35677777753 344 6999999999999999998743
No 469
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=86.31 E-value=0.88 Score=37.34 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwikR 86 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|||+....
T Consensus 36 ~~~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~s 82 (214)
T 2guh_A 36 TAEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred chhhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcCC
Confidence 3457788888754 345 79999999999999999998654
No 470
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=86.25 E-value=0.97 Score=36.11 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=28.1
Q ss_pred HHHHHHHHHH-----HcC--CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 51 SVRMRIVELA-----QLG--IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 51 dlR~RIV~L~-----~~G--~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.+|++.. +.| .|.++||+..|||++|+|+..+
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 13 RNRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 5677888754 345 7999999999999999998643
No 471
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=86.20 E-value=0.92 Score=36.50 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
++... .+|+.+..+|.+..+||+.|++|.+||...+++-+
T Consensus 143 Lt~rE-~~vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~ 182 (208)
T 1yio_A 143 LTGRE-QQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIM 182 (208)
T ss_dssp SCHHH-HHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHH-HHHHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44333 34677777899999999999999999988777765
No 472
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=86.14 E-value=0.72 Score=36.38 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 63 GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 63 G~S~~eIAr~LGVSrsTVsRwik 85 (258)
+.|.++||++.|||++|+|+...
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 27 GTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHTC
T ss_pred cCCHHHHHHHhCCChHHHHHHCC
Confidence 46999999999999999998643
No 473
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=86.07 E-value=0.85 Score=37.58 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 48 LPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 48 ~S~dlR~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
++...+ +|+.++.+|.+..+||+.|++|.+||...+++-+
T Consensus 160 Lt~rE~-~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~ 199 (225)
T 3klo_A 160 LTKREQ-QIIKLLGSGASNIEIADKLFVSENTVKTHLHNVF 199 (225)
T ss_dssp SCHHHH-HHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555443 5777777899999999999999999999999975
No 474
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=86.05 E-value=2.5 Score=34.69 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=49.7
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHh--------CCCHHHHHHHHHHhhhhCCcccCCC--CCCCCC---CCCHHHHHHHHHH
Q psy15598 52 VRMRIVELAQ-LGIRPCDISRQL--------RVSHGCVSKILARYHETGSILPGAI--GGSKPR---VTTPKVVSYIKEL 117 (258)
Q Consensus 52 lR~RIV~L~~-~G~S~~eIAr~L--------GVSrsTVsRwikRyrEtGsl~pk~r--gG~RPr---klT~e~~~~I~~l 117 (258)
++..|+.+.. ..++..+|++.| ++|.++||+.+++..+.|-|..... +|++++ .+|+.=++.+.++
T Consensus 3 l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~ 82 (179)
T 1yg2_A 3 LPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEW 82 (179)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHH
Confidence 4666777765 458999999999 7999999999999999997743221 221223 3788878888887
Q ss_pred HHh
Q psy15598 118 KQK 120 (258)
Q Consensus 118 v~~ 120 (258)
+..
T Consensus 83 ~~~ 85 (179)
T 1yg2_A 83 FDQ 85 (179)
T ss_dssp HHS
T ss_pred HhC
Confidence 764
No 475
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=86.02 E-value=0.99 Score=36.78 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|||+...
T Consensus 32 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~ 77 (221)
T 3g7r_A 32 TPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFS 77 (221)
T ss_dssp --CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred cchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 3457888888864 234 7999999999999999998654
No 476
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=85.99 E-value=0.42 Score=38.08 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
+.+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 11 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 54 (195)
T 2iu5_A 11 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYF 54 (195)
T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred cHHHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHc
Confidence 456788888754 345 799999999999999999753
No 477
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=85.86 E-value=1.3 Score=34.19 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=26.3
Q ss_pred HHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 53 RMRIVELAQ-LGIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 53 R~RIV~L~~-~G~S~~eIAr~LGVSrsTVsRwik 85 (258)
-.+|-.+.+ .|+|..++|+.+|||+++|++|-+
T Consensus 9 G~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 9 GETFRKKREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 344555554 699999999999999999998754
No 478
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=85.77 E-value=0.53 Score=36.81 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 51 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYF 51 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTC
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHc
Confidence 456777777754 335 699999999999999998754
No 479
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=85.74 E-value=1 Score=37.06 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
-..+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 10 ~~~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~ 55 (231)
T 2qib_A 10 GVEERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFP 55 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCC
Confidence 3456778888754 345 6999999999999999998643
No 480
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=85.66 E-value=1.3 Score=37.61 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhh-CC-cccCCCCCCCCCCCCHHHHHHH
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHET-GS-ILPGAIGGSKPRVTTPKVVSYI 114 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEt-Gs-l~pk~rgG~RPrklT~e~~~~I 114 (258)
.+++..+.+-.|.+.+|++|+||.++|++-+++.++. |. +-. |.+ |.-.+|++=+.++
T Consensus 7 L~~f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~--R~~-r~~~lT~~G~~l~ 66 (305)
T 3fxq_A 7 LQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLV--RTK-RGVSLTSFGQAFM 66 (305)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEE--ECS-SSEEECHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEE--ecC-CCccCCHhHHHHH
Confidence 3455555555699999999999999999999999864 43 222 223 5566777644444
No 481
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=85.66 E-value=0.82 Score=37.46 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|..+||+..|||++|||+...
T Consensus 13 ~~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~ 56 (208)
T 3v6g_A 13 AGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFN 56 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 34678888753 344 6999999999999999998643
No 482
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=85.63 E-value=0.41 Score=41.21 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC----CCCCCCHHHHHHHHHhc
Q psy15598 108 PKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCD----KFNVPSVSSISRILRNK 157 (258)
Q Consensus 108 ~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v----~~~~pS~STI~RiLrr~ 157 (258)
++++..|.++.+++|...+++|++.+...|++- +...+|.+||+++|+..
T Consensus 14 ~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~ 67 (194)
T 1ic8_A 14 AHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKG 67 (194)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSB
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcC
Confidence 457889999998999999999999998888741 12236999999998653
No 483
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=85.61 E-value=1.8 Score=34.93 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhh-CC-cccCCCCC--CCCCCCCHHHHHHHHHH
Q psy15598 53 RMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHET-GS-ILPGAIGG--SKPRVTTPKVVSYIKEL 117 (258)
Q Consensus 53 R~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEt-Gs-l~pk~rgG--~RPrklT~e~~~~I~~l 117 (258)
..+++..+.+--|.+.+|+.|+||.++|++.+++.++. |. +-.+..+| ++.-.+|++=+.++...
T Consensus 28 ~L~~f~av~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a 96 (135)
T 2ijl_A 28 KVELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERY 96 (135)
T ss_dssp HHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHH
Confidence 34566666555699999999999999999999999864 42 32332221 14567887766555444
No 484
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=85.45 E-value=0.76 Score=36.54 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwik 85 (258)
..+.|.+|++.. +. +.|.++||+..|||++|+|+...
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (216)
T 3s5r_A 8 DKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFK 52 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcC
Confidence 345677777653 23 47999999999999999998743
No 485
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=85.44 E-value=1.1 Score=37.63 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwikR 86 (258)
..+.|.+|++.. +. +.|..+||+..|||++|||+....
T Consensus 46 ~~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 46 KTRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 346778888753 23 479999999999999999987543
No 486
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=85.37 E-value=1.2 Score=34.52 Aligned_cols=43 Identities=12% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCC----CCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCC
Q psy15598 109 KVVSYIKELKQKDP----GIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSS 161 (258)
Q Consensus 109 e~~~~I~~lv~~nP----~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~ 161 (258)
..+..|.+++.+|| .++..||++.+. +|.+||.|+.+..|...
T Consensus 21 ~~e~~ia~yil~~~~~~~~~si~elA~~~~----------vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 21 PSERKLADYILAHPHXAIESTVNEISALAN----------SSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHHHHHHHHCHHHHHTCCHHHHHHHTT----------CCHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHChHHHHhcCHHHHHHHHC----------CCHHHHHHHHHHcCCCC
No 487
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=85.24 E-value=0.78 Score=42.59 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=40.2
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCC-CC--CCCCHHHHHHHHHHH
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGS-KP--RVTTPKVVSYIKELK 118 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~-RP--rklT~e~~~~I~~lv 118 (258)
.|++.++||+.++++++||.+.++|-.+.|-|.-.+.... |- -.+|++-++.+.++.
T Consensus 419 ~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~ 478 (487)
T 1hsj_A 419 NEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLI 478 (487)
T ss_dssp SEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 3589999999999999999999999999998743221111 21 236666555554443
No 488
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=85.22 E-value=4.3 Score=31.79 Aligned_cols=73 Identities=15% Similarity=0.013 Sum_probs=56.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhhhhCCcccCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCC
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKD-PGIFAWEIRDRLLSDGVCD 140 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyrEtGsl~pk~rgG~RPrklT~e~~~~I~~lv~~n-P~ita~EIr~~L~~~Gv~v 140 (258)
-|...+.+|+.||++...|..+..++. .-+.+.....+..+.+++ ...+...|...|.+.|+..
T Consensus 34 lG~~Wk~LAR~LGlse~dId~I~~~~p---------------~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~ 98 (114)
T 2of5_A 34 LGPEWEPMVLSLGLSQTDIYRCKANHP---------------HNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDP 98 (114)
T ss_dssp CCSTHHHHHHTTTCCHHHHHHHHHHCS---------------SCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCT
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHCC---------------CCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCH
Confidence 589999999999999999999998873 123345566666666654 4678999999999888875
Q ss_pred CCCCCCHHHHHHHHHhc
Q psy15598 141 KFNVPSVSSISRILRNK 157 (258)
Q Consensus 141 ~~~~pS~STI~RiLrr~ 157 (258)
||+++|...
T Consensus 99 --------~v~~~~~~~ 107 (114)
T 2of5_A 99 --------SLLLHMLEL 107 (114)
T ss_dssp --------HHHHHHCC-
T ss_pred --------HHHHHHHHH
Confidence 788877643
No 489
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=85.22 E-value=0.33 Score=38.31 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 47 PLPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 47 ~~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
.-..+.|.+|++.. +.| .|.++||+..|||++|+|+..
T Consensus 12 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 57 (211)
T 3him_A 12 LGTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHY 57 (211)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcC
Confidence 34567888888864 234 799999999999999998753
No 490
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=85.20 E-value=0.99 Score=37.17 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 48 LPNSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 48 ~S~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
...+.|.+|++.. +.| .|.++||+..|||++|+|+...
T Consensus 13 ~~~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~ 58 (216)
T 2oi8_A 13 YRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFD 58 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 4567888888754 234 7999999999999999987543
No 491
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=85.18 E-value=0.89 Score=36.55 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHH-----Hc---CCCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVELA-----QL---GIRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L~-----~~---G~S~~eIAr~LGVSrsTVsRwi 84 (258)
..+.|.+|++.. +. +.|..+||+..|||++|||+..
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~hF 53 (200)
T 2hyj_A 10 AQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHF 53 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTC
T ss_pred hhccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHc
Confidence 457888888764 23 4799999999999999999753
No 492
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=85.17 E-value=0.57 Score=36.21 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=24.2
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHhh
Q psy15598 62 LGIRPCDISRQLRVSHGCVSKILARYH 88 (258)
Q Consensus 62 ~G~S~~eIAr~LGVSrsTVsRwikRyr 88 (258)
.+.+.+.+|+.+||+.+||+||...+.
T Consensus 22 a~~gq~~vA~~iGV~~StISR~k~~~~ 48 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRDWI 48 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHHHH
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHhhhH
Confidence 578999999999999999999988663
No 493
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.10 E-value=1.5 Score=31.22 Aligned_cols=41 Identities=17% Similarity=-0.010 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhccCCC
Q psy15598 111 VSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSS 161 (258)
Q Consensus 111 ~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~~~~ 161 (258)
+..|.+++.++..++..||++.+. +|.+||++.|+.+..+.
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~lg----------vs~~tv~r~L~~L~~~G 42 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALA----------VTDYQARYYLLLLEKAG 42 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHT----------SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHC----------cCHHHHHHHHHHHHHCC
Confidence 345777777777899999999883 49999999998865543
No 494
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.06 E-value=2.5 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcc
Q psy15598 102 KPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKI 158 (258)
Q Consensus 102 RPrklT~e~~~~I~~lv~~nP~ita~EIr~~L~~~Gv~v~~~~pS~STI~RiLrr~~ 158 (258)
.+++.+++....+++++.. ..+..+|+..+ | ||.+||+|+++...
T Consensus 19 ~~~~ys~e~k~~~v~~~~~--g~s~~~iA~~~---g-------Is~sTl~rW~k~~~ 63 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD--GESKASVARDI---G-------VPESTLRGWCKNED 63 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH--TCCHHHHHHHH---T-------CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC--CCCHHHHHHHH---C-------cCHHHHHHHHHHHH
Confidence 4567888887777777754 47888887776 3 49999999997644
No 495
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=85.03 E-value=0.42 Score=37.95 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.8
Q ss_pred CHHHHHHHHHH----H--HcC---CCHHHHHHHhCCCHHHHHHHH
Q psy15598 49 PNSVRMRIVEL----A--QLG---IRPCDISRQLRVSHGCVSKIL 84 (258)
Q Consensus 49 S~dlR~RIV~L----~--~~G---~S~~eIAr~LGVSrsTVsRwi 84 (258)
..+.|.+|++. + +.| .|.++||+..|||++|+|+..
T Consensus 22 ~~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 66 (212)
T 3nxc_A 22 KRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHF 66 (212)
T ss_dssp -CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHC
Confidence 44566777665 2 224 799999999999999999754
No 496
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=84.95 E-value=1.4 Score=35.43 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH-----HcC--CCHHHHHHHhCCCHHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG--IRPCDISRQLRVSHGCVSKILAR 86 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G--~S~~eIAr~LGVSrsTVsRwikR 86 (258)
.+.|.+|++.. +.| .|.++||+..|||++|||+....
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 11 EQAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHhcCC
Confidence 45777787753 234 89999999999999999987653
No 497
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=84.92 E-value=2.4 Score=35.47 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhhh-CC-cccCCCCCCCCCCCCHHHHHH
Q psy15598 55 RIVELAQLGIRPCDISRQLRVSHGCVSKILARYHET-GS-ILPGAIGGSKPRVTTPKVVSY 113 (258)
Q Consensus 55 RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrEt-Gs-l~pk~rgG~RPrklT~e~~~~ 113 (258)
+++..+.+-.|.+++|+.|+||.++|++-+++.++. |. +-.+. ++ |.-.+|++=+.+
T Consensus 10 ~~f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~-~~-~~~~lT~~G~~l 68 (306)
T 3fzv_A 10 KYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRH-HA-QGVSLTPAGARF 68 (306)
T ss_dssp HHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC-----------CCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeec-CC-CCceECHhHHHH
Confidence 444455555699999999999999999999999864 42 22221 12 456677654433
No 498
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=84.78 E-value=1.2 Score=35.36 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=28.3
Q ss_pred HHHHHHHHHHH-----HcC--CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG--IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G--~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|.++||+..|||++|+|+..+
T Consensus 15 ~~~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 15 RRNYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHHCC
Confidence 35677888753 234 6999999999999999998654
No 499
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=84.75 E-value=1.3 Score=36.54 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHHHHhCCCHHHHHHHHH
Q psy15598 50 NSVRMRIVELA-----QLG---IRPCDISRQLRVSHGCVSKILA 85 (258)
Q Consensus 50 ~dlR~RIV~L~-----~~G---~S~~eIAr~LGVSrsTVsRwik 85 (258)
.+.|.+|++.. +.| .|.++||+..|||++|||+..+
T Consensus 6 ~~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~hF~ 49 (235)
T 2fbq_A 6 SETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFG 49 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 46788888754 234 6999999999999999998643
No 500
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=84.73 E-value=1.2 Score=36.89 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhhh-hCC-cccCCCCCCCCCCCCHHHHHHH
Q psy15598 54 MRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHE-TGS-ILPGAIGGSKPRVTTPKVVSYI 114 (258)
Q Consensus 54 ~RIV~L~~~G~S~~eIAr~LGVSrsTVsRwikRyrE-tGs-l~pk~rgG~RPrklT~e~~~~I 114 (258)
.+++..+.+-.|.+++|+.|+||.++|++-+++.++ -|. +-.+ .+ +.-.+|++-+.++
T Consensus 6 l~~f~~v~~~~s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R--~~-~~~~lT~~G~~l~ 65 (291)
T 3szp_A 6 LNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNR--HA-RKLTLTEAGERFY 65 (291)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEE--ET-TEEEECHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEee--cC-CCcccCHhHHHHH
Confidence 345555566779999999999999999999999985 443 2222 23 4566777644444
Done!