RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15598
(258 letters)
>gnl|CDD|238076 cd00131, PAX, Paired Box domain.
Length = 128
Score = 241 bits (617), Expect = 5e-82
Identities = 103/127 (81%), Positives = 113/127 (88%)
Query: 32 YGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
G VNQLGGVFVNGRPLP+S+R RIVELAQ GIRPCDISRQLRVSHGCVSKIL RY+ETG
Sbjct: 2 QGGVNQLGGVFVNGRPLPDSIRQRIVELAQSGIRPCDISRQLRVSHGCVSKILNRYYETG 61
Query: 92 SILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSIS 151
SI PGAIGGSKPRV TP+VV I+ KQ++PG+FAWEIRDRLL +GVCDK NVPSVSSI+
Sbjct: 62 SIRPGAIGGSKPRVATPEVVKKIEIYKQENPGMFAWEIRDRLLQEGVCDKSNVPSVSSIN 121
Query: 152 RILRNKI 158
RILRNK
Sbjct: 122 RILRNKA 128
>gnl|CDD|109353 pfam00292, PAX, 'Paired box' domain.
Length = 125
Score = 234 bits (599), Expect = 3e-79
Identities = 97/124 (78%), Positives = 107/124 (86%)
Query: 32 YGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
G VNQLGGVFVNGRPLPN +R +IVELA G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 2 QGRVNQLGGVFVNGRPLPNHIRQKIVELAHSGVRPCDISRQLRVSHGCVSKILGRYQETG 61
Query: 92 SILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSIS 151
SI PG IGGSKP+V TP+VV I E K+++PGIFAWEIRDRLL++GVCD NVPSVSSIS
Sbjct: 62 SIRPGVIGGSKPKVATPEVVKKIAEYKRENPGIFAWEIRDRLLAEGVCDNDNVPSVSSIS 121
Query: 152 RILR 155
RILR
Sbjct: 122 RILR 125
>gnl|CDD|128645 smart00351, PAX, Paired Box domain.
Length = 125
Score = 232 bits (594), Expect = 1e-78
Identities = 100/124 (80%), Positives = 110/124 (88%)
Query: 32 YGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
+G VNQLGGVFVNGRPLP+ R RIVELAQ G+RPCDISRQL VSHGCVSKIL RY+ETG
Sbjct: 2 HGGVNQLGGVFVNGRPLPDEERQRIVELAQNGVRPCDISRQLCVSHGCVSKILGRYYETG 61
Query: 92 SILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSIS 151
SI PGAIGGSKP+V TPKVV I + KQ++PGIFAWEIRDRLLS+GVCDK NVPSVSSI+
Sbjct: 62 SIRPGAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLSEGVCDKDNVPSVSSIN 121
Query: 152 RILR 155
RILR
Sbjct: 122 RILR 125
>gnl|CDD|222091 pfam13384, HTH_23, Homeodomain-like domain.
Length = 50
Score = 41.1 bits (97), Expect = 1e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 53 RMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
R I+ L G+ +I+ L VS V + L RY E G
Sbjct: 7 RAEILLLLAEGLSVKEIAELLGVSRRTVYRWLKRYREGG 45
>gnl|CDD|222226 pfam13565, HTH_32, Homeodomain-like domain.
Length = 74
Score = 40.4 bits (95), Expect = 4e-05
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 80 VSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIF--AWEIRDRLLSDG 137
V + L RY E G+ G P+ + I ++P ++L
Sbjct: 2 VYRWLKRYREEGAAGLVHRPGRPSNHRYPEELRAIVLTLIREPYADFGPTLAAEKLAELH 61
Query: 138 VCDKFNVPSVSSISRIL 154
S ++ R L
Sbjct: 62 G----LKISRETLRRWL 74
>gnl|CDD|222216 pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix
domain is often found in transferases and is likely to
be DNA-binding.
Length = 109
Score = 39.6 bits (93), Expect = 2e-04
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 53 RMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETG--SILPGAIGGSKPRVTTPKV 110
R + + L G+ I+R L +S V + L R++E G ++ G +P+
Sbjct: 1 RAQALLLLAEGVSVAQIARLLGLSRRTVYRWLKRFNEGGLAALKDRPRSGRPRNRLSPEQ 60
Query: 111 VSYIKEL--KQKDPGIFAWEIRDRLLSDGVCDKFNVP-SVSSISRILR 155
+ + L ++ G W + LL++ + +F V S S++ R+L+
Sbjct: 61 EAALVALAREKPPEGFARWTL--ELLAELLERRFGVTVSRSTVRRLLK 106
>gnl|CDD|238042 cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and
similar prokaryotic, metal regulated homodimeric
repressors. ARSR subfamily of helix-turn-helix
bacterial transcription regulatory proteins (winged
helix topology). Includes several proteins that appear
to dissociate from DNA in the presence of metal ions.
Length = 78
Score = 37.3 bits (87), Expect = 7e-04
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 45 GRPLPNSVRMRIVE-LAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 93
+ L + R+RI+ L + + +++ +L +S VS+ L + E G +
Sbjct: 1 LKALSDPTRLRILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLV 50
>gnl|CDD|225949 COG3415, COG3415, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 138
Score = 38.5 bits (90), Expect = 8e-04
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 45 GRPLPNSVRMRIVEL-AQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKP 103
+P N +R R+V+ G+ + +++ VS V + + RY ETG LP +P
Sbjct: 2 AKPFSNDLRERVVDAVVGEGLSCREAAKRFGVSISTVYRWVRRYRETGLDLPPKPRKGRP 61
Query: 104 R-VTTPKVVSYIKELKQKDPGIFAW---EIRDRLLSDGVCDKFNVP-SVSSISRILR 155
R ++ ++ ++ L++KD W E+ + L +F V S++ R+L
Sbjct: 62 RKLSEEQLEILLERLREKD-----WTLKELVEELGL-----EFGVWYHASAVRRLLH 108
>gnl|CDD|222191 pfam13518, HTH_28, Helix-turn-helix domain. This
helix-turn-helix domain is often found in transposases
and is likely to be DNA-binding.
Length = 52
Score = 30.3 bits (69), Expect = 0.13
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 53 RMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
R++IVEL G + +R+L +S V + + RY E G
Sbjct: 2 RLKIVELYLEGESIREAARKLGISRRTVYRWIKRYEEGG 40
>gnl|CDD|182927 PRK11050, PRK11050, manganese transport regulator MntR;
Provisional.
Length = 152
Score = 31.9 bits (73), Expect = 0.17
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 57 VEL-----AQLGI-RPCDISRQLRVSHGCVSKILAR 86
VEL A++G R DI+ +L VS V+K+L R
Sbjct: 39 VELIADLIAEVGEARQVDIAARLGVSQPTVAKMLKR 74
>gnl|CDD|206107 pfam13936, HTH_38, Helix-turn-helix domain. This
helix-turn-helix domain is often found in transferases
and is likely to be DNA-binding.
Length = 44
Score = 27.0 bits (61), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 53 RMRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 86
R I L + G+ +I+R+L S +S+ L R
Sbjct: 10 REEIEALLKEGLSLREIARRLGRSPSTISRELKR 43
>gnl|CDD|221778 pfam12802, MarR_2, MarR family. The Mar proteins are involved in
the multiple antibiotic resistance, a non-specific
resistance system. The expression of the mar operon is
controlled by a repressor, MarR. A large number of
compounds induce transcription of the mar operon. This
is thought to be due to the compound binding to MarR,
and the resulting complex stops MarR binding to the
DNA. With the MarR repression lost, transcription of
the operon proceeds. The structure of MarR is known and
shows MarR as a dimer with each subunit containing a
winged-helix DNA binding motif.
Length = 60
Score = 27.2 bits (61), Expect = 1.6
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 59 LAQLGIRPC----DISRQLRVSHGCVSKILARYHETG 91
L L +++R+L +S VS+++ R E G
Sbjct: 11 LLALARAGGLTVAELARRLGLSKQTVSRLVKRLEEKG 47
>gnl|CDD|234877 PRK00964, PRK00964, tetrahydromethanopterin S-methyltransferase
subunit A; Provisional.
Length = 225
Score = 28.9 bits (65), Expect = 2.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 109 KVVSYIKELKQKDPGIFAWE 128
+ + IKE KDPG F E
Sbjct: 143 AITAKIKECIAKDPGAFDEE 162
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 29.0 bits (65), Expect = 3.3
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 45 GRPLPN-SVRMRIVELA-QLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSK 102
G P N ++ M + ELA QL I +I + RV G KIL GAIG K
Sbjct: 560 GAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKIL-----------GAIGEGK 608
Query: 103 PRVTTPKVVS 112
+ P S
Sbjct: 609 APTSVPSAAS 618
>gnl|CDD|236459 PRK09297, PRK09297, tRNA-splicing endonuclease subunit alpha;
Reviewed.
Length = 169
Score = 27.9 bits (63), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 63 GIRPCDISRQLRVSHGCVSK--ILARYHETGSI 93
I P +I+ +RVSH V K +LA + G +
Sbjct: 128 EISPNEITSFVRVSHS-VRKKLVLAIVDDDGDV 159
>gnl|CDD|236005 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 28.5 bits (64), Expect = 4.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 217 DILSAAAGLPHQCNEHHGNYSNYYHMYLGQHQSPWP 252
L AAA P HH + ++H H+SPW
Sbjct: 467 KELLAAADAPGHHEGHHEEHGEHHHHSGSPHESPWT 502
>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 670
Score = 27.9 bits (62), Expect = 6.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 53 RMRIVE-LAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94
R I+ LA+L P IS L+++H V + AR E+ SIL
Sbjct: 491 RNEIIRGLAEL---PAAISECLKITHDPVKALAARLKESSSIL 530
>gnl|CDD|216192 pfam00920, ILVD_EDD, Dehydratase family.
Length = 521
Score = 27.8 bits (63), Expect = 6.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 54 MRIVELAQLGIRPCDI 69
RIVEL + ++P DI
Sbjct: 203 RRIVELVKEDLKPRDI 218
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 27.3 bits (60), Expect = 9.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 158 IGSSIVQHHHHPHIYNSIYPSYPYPSNTS 186
I + + HI+ S YPS P P +
Sbjct: 1 CHMEIQKQEDNEHIFRSRYPSVPVPDKLT 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,094,618
Number of extensions: 1218474
Number of successful extensions: 1185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1181
Number of HSP's successfully gapped: 29
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)