RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15598
(258 letters)
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX,
paired domain, DNA-binding protein, gene regulation/DNA
complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP:
a.4.1.5
Length = 128
Score = 179 bits (454), Expect = 1e-57
Identities = 83/125 (66%), Positives = 106/125 (84%)
Query: 33 GEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGS 92
G VNQLGGVF+NGRPLPN++R++IVE+A GIRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 3 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 62
Query: 93 ILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISR 152
I PG IGGSKPR+ TP++ + I+E K+ PG+F+WEIR++L+ +GVCD+ PSVS+ISR
Sbjct: 63 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 122
Query: 153 ILRNK 157
++R +
Sbjct: 123 LVRGR 127
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription
factor, transcription/DNA complex; 2.25A {Homo sapiens}
SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Length = 149
Score = 174 bits (441), Expect = 2e-55
Identities = 95/136 (69%), Positives = 109/136 (80%)
Query: 26 DASGQQYGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILA 85
S +G VNQLGGVFVNGRPLP+ VR RIVELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 11 RTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
Query: 86 RYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVP 145
RY+ETGSI PG IGGSKP+V TPKVV I E K+++P +FAWEIRDRLL++ VCD VP
Sbjct: 71 RYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVP 130
Query: 146 SVSSISRILRNKIGSS 161
SVSSI+RI+R K+
Sbjct: 131 SVSSINRIIRTKVQQP 146
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple
frequency, 3D NMR, induced FIT, alternative splicing,
developmental protein; NMR {Homo sapiens}
Length = 159
Score = 171 bits (435), Expect = 2e-54
Identities = 96/157 (61%), Positives = 114/157 (72%), Gaps = 11/157 (7%)
Query: 25 TDASGQQYGEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKIL 84
++ +G +NQLGG FVNGRPLP VR RIV+LA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 3 HNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKIL 62
Query: 85 ARYHETGSILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNV 144
RY+ETGSI PG IGGSKP+V TPKVV I + K+++P +FAWEIRDRLL++GVCD V
Sbjct: 63 GRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTV 122
Query: 145 PSVSSISRILRNKIG-----------SSIVQHHHHPH 170
PSVSSI+RI+R K+ HHHH H
Sbjct: 123 PSVSSINRIIRTKVQQPFNLPMDSGAPGGGSHHHHHH 159
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 58.7 bits (141), Expect = 8e-11
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 112 SYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNV----PSVSSISRILRNKIGSSIVQHHH 167
+ ++ L Q+DP A ++ L + + V + S +S+ L +
Sbjct: 18 AVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAA 77
Query: 168 HPHIYNSIYPSYPYPSNTSPTVSCTKVPIGSLTPPPRP 205
Y + + P G P +
Sbjct: 78 LYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKG 115
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 48.1 bits (113), Expect = 6e-07
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 114 IKELKQKDPGIFAWEIRDRLLSDGVCDKFNV----PSVSSISRILR 155
+ + +DP A I+ + + + V + S +S+ L
Sbjct: 21 VDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon
DNA, bipartite DNA-binding, HTH- motif, DNA binding
protein/DNA complex; 2.69A {Caenorhabditis elegans}
SCOP: a.4.1.2 a.4.1.2
Length = 141
Score = 40.8 bits (95), Expect = 8e-05
Identities = 12/113 (10%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPR 104
G L ++ R ++ + L + ++SR++ S C+ L G+ + +
Sbjct: 4 GSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKR----APRRK 59
Query: 105 VTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVP-SVSSISRILRN 156
+ + + + + ++ + S +I +++
Sbjct: 60 ALSVRDERNVIRAASNSCKT----------ARDIRNELQLSASKRTILNVIKR 102
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 33.9 bits (77), Expect = 0.018
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 26/126 (20%)
Query: 114 IKELKQKDPGIFAWEIRDRLLSDGVCD----------KFNVPSVSSISRILRNKIG---- 159
KEL+Q FA ++ + ++ G V S ++ISR ++
Sbjct: 9 QKELEQ-----FAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNM 63
Query: 160 SSIVQHHHHPHIYNSIYPSYPYPSNTSPTVSCTKVPIGSLTPPPRPQV-------CWPSS 212
S + + S + V K S+ R + PS
Sbjct: 64 SKLRPLLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSL 123
Query: 213 HSVTDI 218
+T I
Sbjct: 124 QQITHI 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.080
Identities = 36/225 (16%), Positives = 58/225 (25%), Gaps = 87/225 (38%)
Query: 59 LAQ-LGIRPCDISRQ-LRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIK- 115
L + L RP D+ R+ L + +S I + K V K+ + I+
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD----GLATWDNWK-HVNCDKLTTIIES 361
Query: 116 --------ELKQ--KDPGIFA-------------W---------EIRDRLLSDGVCDKFN 143
E ++ +F W + ++L + +K
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 144 VPSVSSI-SRILRNKIGSSIVQHHHHPHIYNSIYPSYPYPSNTSPTVSCTKVPIGSLTPP 202
S SI S L K+ H SI Y P L PP
Sbjct: 422 KESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPK---------TFDSDDLIPP 467
Query: 203 PRPQVCWPSSHSVTDILSAAAGLPHQCNEHHGNYSNYYHMYLGQH 247
D Y++ ++G H
Sbjct: 468 Y------------LD--------------------QYFYSHIGHH 480
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural
genomics, unknown function, PSI- 2, protein structure
initiative; NMR {Geobacter metallireducens gs-15} PDB:
2kjs_A* 2lml_A* 2kwm_A*
Length = 87
Score = 30.2 bits (68), Expect = 0.15
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 143 NVPSVSSISRILRNKIGSSIVQHHHH 168
+ +V ++ ++ K+ + HHHH
Sbjct: 61 KLKNVGDLADLVDKKLARKLEHHHHH 86
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 31.6 bits (71), Expect = 0.24
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 163 VQHHHHPHIYNS--IYPSYPYPSNTSPTVSCTKVPIGSLTPPPRPQVCWPSSHSVTDILS 220
+ HHHH H+ + ++ + S TSPT + + SL P P + P + I +
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGS-MAAPSLHPSLGPGIGSPGQLH-SPIST 58
Query: 221 AAAGLPHQCNEHHGNYSNYYHMYLGQHQSPWPPVQHQ 257
++ + S + +P
Sbjct: 59 LSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTG 95
Score = 27.0 bits (59), Expect = 7.8
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 169 PHIYNSIYPSYPYPSNTSPTVSCTKVPIGSLTPPPRPQVCWPSSHSVTDILSAAAGLPHQ 228
P ++ S+ P P +S PI + PP HS++ + G
Sbjct: 36 PSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTG 95
Query: 229 CNEHHGNYSNYYH 241
+ +
Sbjct: 96 SPQLSSPMNPVSS 108
>3ijd_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; HET: C2F; 2.00A
{Clostridium thermocellum atcc 27405}
Length = 315
Score = 31.2 bits (70), Expect = 0.27
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 125 FAWEIRDRLLSDGVCDKFNVPSVS----------SISRILRNKIGSSIVQHHHH 168
E+ + L G+ N+ SVS ++++ ++ + HHHH
Sbjct: 262 IFNELMEFCLEKGIPIGCNIESVSVRKVEIEASIALAKDIKYIMKGEGHHHHHH 315
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 28.7 bits (65), Expect = 1.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 145 PSVSSISRILRNKIGSSIVQHHHHPH 170
P + ++ I+ K+ +++HHHH H
Sbjct: 252 PDIKAMKNIVIQKLKGELLEHHHHHH 277
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific
recombinase, resolvase, DNA-binding protein, protein-DNA
complex, DNA integration, DNA invertase, DNA
recombination; 3.20A {Staphylococcus aureus}
Length = 209
Score = 28.5 bits (64), Expect = 1.9
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 96 GAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDG-----VCDKFNVPSVSSI 150
G G +P + +P K + + +L +G + + N+ + ++
Sbjct: 143 GVYKG-RPLLYSPNAKDPQKRVI--------YHRVVEMLEEGQAISKIAKEVNI-TRQTV 192
Query: 151 SRILRNKIGSSIVQHHHH 168
RI + G S HHHH
Sbjct: 193 YRIKHDN-GLSSHHHHHH 209
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 28.0 bits (62), Expect = 1.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 114 IKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIGSSIVQ 164
++ L+Q FA E + R + G + +++ L GS Q
Sbjct: 2 MRALEQ-----FANEFKVRRIKLGY-------TQTNVGEALAAVHGSEFSQ 40
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 27.4 bits (61), Expect = 3.1
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 55 RIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 93
R + ++ L +P + + G ++ R +
Sbjct: 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTA 52
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 28.1 bits (62), Expect = 3.4
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 18/140 (12%)
Query: 64 IRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKV--VSYIKELKQK- 120
+ ++ V + + + E G+ + + + I ++ +
Sbjct: 203 VETVLDGDRVYVPVEDIENAIKKEIELGNRP--CVLSTLTFFPPRNSDDIVEIAKICENY 260
Query: 121 --------DPGIFAWEIRDRLLSDGVCDKFNVPSVSSIS-RILRNKIGSSIVQHHHHPHI 171
I ++L K+ V +V S S + L IG +V
Sbjct: 261 DIPHIINGAYAIQNNYYLEKLKKAF---KYRVDAVVSSSDKNLLTPIGGGLVYSTD-AEF 316
Query: 172 YNSIYPSYPYPSNTSPTVSC 191
I SYP ++ +P V+
Sbjct: 317 IKEISLSYPGRASATPVVNT 336
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O
3jyv_O* 1ysh_E 1s1h_O
Length = 151
Score = 27.1 bits (60), Expect = 3.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 49 PNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94
SV +IV+ A+ G+ P I LR +HG + ++ IL
Sbjct: 30 SESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRIL 75
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 27.3 bits (60), Expect = 4.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 159 GSSIVQHHHHPHIYNSIYPSYPYPSNTSPT 188
GSS+ HH H +S + S P SP
Sbjct: 1 GSSLGAHHIHHFHGSSKHHSVPIAIYRSPA 30
>2h09_A Transcriptional regulator MNTR; transcription regulator,
diphtheria toxin, manganese transport, structural
genomics, NPPSFA; 2.10A {Escherichia coli}
Length = 155
Score = 26.6 bits (59), Expect = 6.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 56 IVELAQLG--IRPCDISRQLRVSHGCVSKILARYHETG 91
I +L + R D++ +L VS V+K+L R G
Sbjct: 45 ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMG 82
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Pyrococcus furiosus}
Length = 111
Score = 25.9 bits (57), Expect = 6.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 145 PSVSSISRILRNKIGSSI--VQHHHHPH 170
+ ++R IG + ++HHHH H
Sbjct: 84 YGEDILRDVVRRAIGVELKRLEHHHHHH 111
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.30A {Escherichia coli}
SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Length = 338
Score = 27.0 bits (60), Expect = 6.4
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 158 IGSSIVQHHHHPHIYNSIYPSYPYPSNTSPTVSC 191
+GS + HHHH + P P S P
Sbjct: 1 MGSDKIHHHHHHMAFTPFPPRQPTASARLPLTLM 34
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 27.4 bits (60), Expect = 6.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 196 IGSLTPPPRPQVCW--PSSHSVTDILSAAAGLPH 227
+ +L P PQV W P S I++ A LP
Sbjct: 266 VLALQLPVNPQVVWDVPRSSIANLIMNIATCLPT 299
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 27.3 bits (61), Expect = 6.5
Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 110 VVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVP----SVSSISRILRNKIGSSIVQH 165
+++Y+++ + + + +LL + S+ I R+ + +
Sbjct: 32 LLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGV--R 89
Query: 166 HHHPHIYNSIYPSYPYPS 183
HP +N +
Sbjct: 90 TGHPRFFNQLSTGLDIIG 107
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 26.8 bits (60), Expect = 6.7
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 123 GIFAWEIRDRLLSDGVCDKFNVPSV-SSISRIL---RNKIGSSIVQHHHHPH 170
G+ ++ S VC P V ++++ + R G S ++HHHH H
Sbjct: 196 GVLSF-------SSRVCTDIFKPPVATAVAPYVSWIRKVTGRSALEHHHHHH 240
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding
protein, metalloregulatory protein; 1.61A {Bacillus
subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A
2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A*
2hyg_D 3r60_A* 3r61_A*
Length = 142
Score = 26.5 bits (59), Expect = 6.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 56 IVELAQLG--IRPCDISRQLRVSHGCVSKILARYHETG 91
I L + R DI+ L V V+K++ + +
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDE 50
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 146
Score = 26.1 bits (58), Expect = 7.3
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 39 GGVFVNGRPL----PNSVRMRIVE 58
G + VNGRPL P +++ +++E
Sbjct: 30 GLIKVNGRPLEMIEPRTLQYKLLE 53
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY
LP_3323, structural genomics, PSI-2, prote structure
initiative; 2.12A {Lactobacillus plantarum} SCOP:
c.23.10.9
Length = 232
Score = 26.4 bits (58), Expect = 8.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 150 ISRILRNKIGSSIVQHHHHPH 170
I+R L++ + S ++HHHH H
Sbjct: 212 IARKLQSFLDSHFLEHHHHHH 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,137,020
Number of extensions: 250161
Number of successful extensions: 1007
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 40
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)