RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15598
(258 letters)
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 168 bits (427), Expect = 5e-54
Identities = 82/122 (67%), Positives = 104/122 (85%)
Query: 33 GEVNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGS 92
G VNQLGGVF+NGRPLPN++R++IVE+A GIRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 2 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 61
Query: 93 ILPGAIGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISR 152
I PG IGGSKPR+ TP++ + I+E K+ PG+F+WEIR++L+ +GVCD+ PSVS+ISR
Sbjct: 62 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 121
Query: 153 IL 154
++
Sbjct: 122 LV 123
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 118 bits (299), Expect = 2e-35
Identities = 40/60 (66%), Positives = 49/60 (81%)
Query: 98 IGGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNK 157
IGGSKP+V TPKVV I E K+++P +FAWEIRDRLL++ VCD VPSVSSI+RI+R K
Sbjct: 2 IGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 61
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 118 bits (297), Expect = 4e-35
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 99 GGSKPRVTTPKVVSYIKELKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKI 158
GGSKPRV TP+VVS I + KQ+ P IFAWEIRDRLLS+GVC N+PSVSSI+R+LRN
Sbjct: 1 GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLA 60
Query: 159 G 159
Sbjct: 61 S 61
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 106 bits (267), Expect = 1e-30
Identities = 53/62 (85%), Positives = 56/62 (90%)
Query: 35 VNQLGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 94
VNQLGGVFVNGRPLP+ VR RIVELA G+RPCDISRQLRVSHGCVSKIL RY+ETGSI
Sbjct: 2 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 61
Query: 95 PG 96
PG
Sbjct: 62 PG 63
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal
domain) {Escherichia coli [TaxId: 562]}
Length = 43
Score = 28.5 bits (64), Expect = 0.10
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 45 GRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKIL 84
GR R ++ + Q G+ IS+ + ++ V K++
Sbjct: 1 GRK-RKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVI 39
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 30.4 bits (68), Expect = 0.14
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 48 LPNSVRMRIVE-LAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
+ R +I++ L + +S L + + + + E G
Sbjct: 16 MLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAG 60
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 94
Score = 28.9 bits (65), Expect = 0.19
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 34 EVNQLGGVFVNGRPLPNSVRMRIVE-LAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
+ ++ +F + L + R+RI+E L+ IS QL +S VS L
Sbjct: 4 TLERVTEIF---KALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVH 59
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 30.0 bits (67), Expect = 0.19
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 48 LPNSVRMRIVE-LAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 93
L N R RI+ L + ++SR+L V V + L E G I
Sbjct: 12 LGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLI 58
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria
(Synechococcus), pcc7942 [TaxId: 1129]}
Length = 98
Score = 28.9 bits (65), Expect = 0.22
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 48 LPNSVRMRIVE-LAQLGIRPCDISRQLRVSHGCVSKILARYHETG 91
L + R+R++ LA+ + D+++ + VS VS L
Sbjct: 20 LADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLR 64
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 57
Score = 26.5 bits (59), Expect = 0.52
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 41 VFVNGRPLPNSVRMRIVELA-QLGIRPCDISRQLRVSH 77
V R + R + +L P ++R L+V+H
Sbjct: 20 VINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNH 57
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 63
Score = 25.8 bits (57), Expect = 1.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 56 IVELAQLG--IRPCDISRQLRVSHGCVSKILARYHETG 91
I +L + G I+ +L S VS+ ++R G
Sbjct: 14 IYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDG 51
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 27.6 bits (60), Expect = 1.4
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 120 KDPGIFAWEIRDRLLSDGVCDKFNVPSVSSISRILRNKIG--------SSIVQHHHHPHI 171
DP I D L++G P+ +++SR + K+G + H H
Sbjct: 95 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCT 154
Query: 172 YN 173
Y
Sbjct: 155 YA 156
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 25.5 bits (56), Expect = 1.6
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 69 ISRQLRVSHGCV-----SKILARYHETGSILPGAIGGSKPRVTTP-----KVVSYIKELK 118
+ + R H V KI + I+P + S + K YI+EL+
Sbjct: 1 MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60
Query: 119 QK 120
Q
Sbjct: 61 QS 62
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.6 bits (58), Expect = 3.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 145 PSVSSISRILRN---KIGSSIVQHHHHPH 170
P ++ + +R + S + HHHH H
Sbjct: 257 PDFLTVEQRMRACYYSLASKVEGHHHHHH 285
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 182
Score = 26.2 bits (57), Expect = 3.6
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 117 LKQKDPGIFAWEIRDRLLSDGVCDKFNVPSVSSI--SRILRNKIGSSI--VQHHHHPHIY 172
++ + G W I DR ++ F P + S ++ + I ++H+ I
Sbjct: 10 YEKAENGDLNWIIPDRFIA------FCGPHSRARLESGYHQHSPETYIQYFKNHNVTTII 63
Query: 173 NSIYPSYPYPSNTSPTVSCTKVPIGSLTPPPRPQVC 208
Y T + + P V
Sbjct: 64 RLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVK 99
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia
coli [TaxId: 562]}
Length = 258
Score = 25.1 bits (53), Expect = 9.5
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 38 LGGVFVNGRPLPNSVRMRIVELAQLGIRPCDISRQLRVSHGCVSKILARYH 88
LGGV ++ + +V + RP L + HG +
Sbjct: 9 LGGVLLDSEEALERLFSALVNYRESHQRP------LVIVHGGGCVVDELMK 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,016,821
Number of extensions: 47878
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 24
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)