BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15599
(2347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/407 (61%), Positives = 304/407 (74%), Gaps = 36/407 (8%)
Query: 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKK 60
M LSLKI I NV KTMQF+PST VYDACR+IR++I EA G D+GLFLSD D KK
Sbjct: 1 MVALSLKISI--GNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKK 58
Query: 61 GVWLEPGRNLEYYILRNGDELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTK 120
G+WLE G+ L+YY+LRNGD +EYR+K R LK+RMLDGT+KT++VDDS+ V ++++ IC +
Sbjct: 59 GIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR 118
Query: 121 IGITNHDEYSLVRENPEDEVENKPNFGXXXXXXXXXXXXXXXXMEQLRKKLKTDDEVNWI 180
IGITNHDEYSLVRE E+ K DDE+NW+
Sbjct: 119 IGITNHDEYSLVRELMEE---------------------------------KKDDELNWL 145
Query: 181 DFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDL 240
D +TLREQG++E+E +LLRRKFF+SD N+DS DPVQLNLLYVQARD +L+G+HPV+ D
Sbjct: 146 DHGRTLREQGVEEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDK 205
Query: 241 ACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELD 300
AC+ AG Q IQFG +N KHK FLDLK+FLP+ YVK KG E+KIF HKN +SE++
Sbjct: 206 ACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKG-ERKIFQAHKNCGQMSEIE 264
Query: 301 AKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPL 360
AKV Y K RSL TYGV+FFLVKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W L
Sbjct: 265 AKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL 324
Query: 361 TTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIIL 407
T ++RW AS FTLDFGDY D YYSVQTTE EQI QLIAGYIDIIL
Sbjct: 325 TNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIIL 371
>pdb|2X0C|A Chain A, Structure Of The Talin Rod Residues 1359-1659
Length = 309
Score = 342 bits (876), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 155/300 (51%), Positives = 219/300 (73%)
Query: 1084 GQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSE 1143
GQKECDNA+R +++++ L+ P +PINDMSY+ C + +ME SK LGE MTG++ +AK+
Sbjct: 9 GQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGN 68
Query: 1144 YDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHAC 1203
FG + S ++CG E AQA+YLV +S+ S +GL++ TQF+RA AI+ AC
Sbjct: 69 LPEFGDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMAC 128
Query: 1204 NTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTAN 1263
+L P TQ Q+L+AAT++AKHTS+LCN+CR+AS++T NP AKR FVQSAK+VANSTAN
Sbjct: 129 QSLGEPGCTQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTAN 188
Query: 1264 LVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEP 1323
LV+ IKALD ++ E+N C AT PLL+AVD+L +FA +PEF + + A EP
Sbjct: 189 LVKTIKALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAMEP 248
Query: 1324 ILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQ 1383
I+ + + ++ES+ +I+TA++LAV+P+D P W +LA HS+ VSDSIK+L+TS+RD APGQ
Sbjct: 249 IVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPGQ 308
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 1840 EVVKFGAASLGSNN-PEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESA 1898
+ ++ SLG +AQVL +A V L + + AS +T N +SA
Sbjct: 122 QAIQMACQSLGEPGCTQAQVL--SAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSA 179
Query: 1899 KVMVTNVTSLLKTVKAVEDEHTRGTRA 1925
K + + +L+KT+KA++ + T RA
Sbjct: 180 KEVANSTANLVKTIKALDGDFTEENRA 206
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 48/188 (25%)
Query: 585 YSGVESAITSISHTLPEMSKGVRMLAA---LTPSGDELLDAARKLCFAFTD-------LL 634
Y G ++ S L E G+ A L GD + A++ LC FT+ L+
Sbjct: 39 YFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALC-GFTEAAAQAAYLV 97
Query: 635 KAAQPHSNQPRQNLLNAA--TRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAAL 692
+ P+S +Q L+ R +A +GE + Q +LS A VA T+AL
Sbjct: 98 GVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEPGCTQAQ--VLSAATIVAKHTSAL 155
Query: 693 VLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEV 752
C LA+++ NP ++Q + + KEV
Sbjct: 156 C----------------------NSCRLASARTA-----------NPTAKRQFVQSAKEV 182
Query: 753 ANAVEGLV 760
AN+ LV
Sbjct: 183 ANSTANLV 190
>pdb|3DYJ|A Chain A, Crystal Structure A Talin Rod Fragment
pdb|3DYJ|B Chain B, Crystal Structure A Talin Rod Fragment
Length = 332
Score = 332 bits (850), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 199/324 (61%), Positives = 236/324 (72%), Gaps = 5/324 (1%)
Query: 1753 GTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKT 1812
GTQACI AAS VSGII DLDTTI FATAGTL+ E +TFADHRE ILKTAK LVEDTK
Sbjct: 13 GTQACITAASAVSGIIADLDTTIXFATAGTLNREGA-ETFADHREGILKTAKVLVEDTKV 71
Query: 1813 LVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALG 1872
LV AA SQE+LA AAQ++V+TI +LA+VVK GAASLG+ +PE QV+LINAVKDV ALG
Sbjct: 72 LVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALG 131
Query: 1873 DLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEA 1932
DLI ATKAA+GK +DP + LK SAKV VTNVTSLLKTVKAVEDE T+GTRALE+T E
Sbjct: 132 DLISATKAAAGKVGDDPAVWQLKNSAKVXVTNVTSLLKTVKAVEDEATKGTRALEATTEH 191
Query: 1933 IAQEIRALNSVEQVKSTASPEELVRCTKPITQATAKAVAAGNSCKQEDVIVAANMGRKAI 1992
I QE+ S E T++PE+ +R TK IT ATAKAVAAGNSC+QEDVI AN+ R+AI
Sbjct: 192 IRQELAVFCSPEPPAKTSTPEDFIRXTKGITXATAKAVAAGNSCRQEDVIATANLSRRAI 251
Query: 1993 SDMLAVCKGCSNAAETH-ELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQAL 2051
+D L CK + E ++ ++ L G+E A Y ELL VL L +P D KQ L
Sbjct: 252 ADXLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPN---PDLKQQL 308
Query: 2052 PPISRRIAQSLTELVSIAEQLKGS 2075
S+R+A S+TEL+ AE KG+
Sbjct: 309 TGHSKRVAGSVTELIQAAEAXKGT 332
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 320 bits (819), Expect = 7e-87, Method: Composition-based stats.
Identities = 150/223 (67%), Positives = 179/223 (80%)
Query: 190 GIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQT 249
GID + KFF+SD N+DS DPVQLNLLYVQARD +L+G+HPV+ + AC+ G Q
Sbjct: 1 GIDPFTGIDPFTKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFGGFQA 60
Query: 250 HIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTC 309
IQFG + KHKP FLDLKEFLP+ Y+K +G EK+IF EHKN +SE++AKV Y K
Sbjct: 61 QIQFGPHVEHKHKPGFLDLKEFLPKEYIKQRGAEKRIFQEHKNCGEMSEIEAKVKYVKLA 120
Query: 310 RSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS 369
RSL TYGV+FFLVKEKMKGKNKLVPRLLG+TKDSV+R+DE+TKE+++ WPLTTV+RW AS
Sbjct: 121 RSLRTYGVSFFLVKEKMKGKNKLVPRLLGITKDSVMRVDEKTKEVLQEWPLTTVKRWAAS 180
Query: 370 SNVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMS 412
FTLDFG+Y ++YYSVQTTE EQI QLIAGYIDIILKKK S
Sbjct: 181 PKSFTLDFGEYQESYYSVQTTEGEQISQLIAGYIDIILKKKQS 223
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 306 bits (785), Expect = 8e-83, Method: Composition-based stats.
Identities = 141/206 (68%), Positives = 168/206 (81%), Gaps = 1/206 (0%)
Query: 202 KFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKH 261
KFF+SD N+DS DPVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG +N KH
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKH 61
Query: 262 KPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFL 321
KP FL+LK+FLP+ Y+K KG E+KIF HKN +SE++AKV Y K RSL TYGV+FFL
Sbjct: 62 KPGFLELKDFLPKEYIKQKG-ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFL 120
Query: 322 VKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS 381
VKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTLDFGDY
Sbjct: 121 VKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQ 180
Query: 382 DNYYSVQTTEAEQIQQLIAGYIDIIL 407
D YYSVQTTE EQI QLIAGYIDIIL
Sbjct: 181 DGYYSVQTTEGEQIAQLIAGYIDIIL 206
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 302 bits (773), Expect = 2e-81, Method: Composition-based stats.
Identities = 142/203 (69%), Positives = 165/203 (81%), Gaps = 1/203 (0%)
Query: 215 PVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQ 274
PVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG +N KHK FLDLK+FLP+
Sbjct: 1 PVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPK 60
Query: 275 SYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVP 334
YVK KG E+KIF HKN +SE++AKV Y K RSL TYGV+FFLVKEKMKGKNKLVP
Sbjct: 61 EYVKQKG-ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVP 119
Query: 335 RLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQ 394
RLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTLDFGDY D YYSVQTTE EQ
Sbjct: 120 RLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQ 179
Query: 395 IQQLIAGYIDIILKKKMSKDHFG 417
I QLIAGYIDIILKKK SKDHFG
Sbjct: 180 IAQLIAGYIDIILKKKKSKDHFG 202
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 300 bits (769), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 138/202 (68%), Positives = 164/202 (81%), Gaps = 1/202 (0%)
Query: 206 SDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPF 265
SD N+DS DPVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG +N KHKP F
Sbjct: 1 SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGF 60
Query: 266 LDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
L+LK+FLP+ Y+K KG E+KIF HKN +SE++AKV Y K RSL TYGV+FFLVKEK
Sbjct: 61 LELKDFLPKEYIKQKG-ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 119
Query: 326 MKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYY 385
MKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTLDFGDY D YY
Sbjct: 120 MKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYY 179
Query: 386 SVQTTEAEQIQQLIAGYIDIIL 407
SVQTTE EQI QLIAGYIDIIL
Sbjct: 180 SVQTTEGEQIAQLIAGYIDIIL 201
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 298 bits (762), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 139/201 (69%), Positives = 162/201 (80%), Gaps = 1/201 (0%)
Query: 212 SHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEF 271
S DPVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG +N KHK FLDLK+F
Sbjct: 23 SRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDF 82
Query: 272 LPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNK 331
LP+ YVK KG E+KIF HKN +SE++AKV Y K RSL TYGV+FFLVKEKMKGKNK
Sbjct: 83 LPKEYVKQKG-ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNK 141
Query: 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTE 391
LVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTLDFGDY D YYSVQTTE
Sbjct: 142 LVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTE 201
Query: 392 AEQIQQLIAGYIDIILKKKMS 412
EQI QLIAGYIDIILKKK S
Sbjct: 202 GEQIAQLIAGYIDIILKKKKS 222
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 285 bits (730), Expect = 2e-76, Method: Composition-based stats.
Identities = 132/193 (68%), Positives = 157/193 (81%), Gaps = 1/193 (0%)
Query: 215 PVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQ 274
PVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG +N KHKP FL+LK+FLP+
Sbjct: 1 PVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPK 60
Query: 275 SYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVP 334
Y+K KG E+KIF HKN +SE++AKV Y K RSL TYGV+FFLVKEKMKGKNKLVP
Sbjct: 61 EYIKQKG-ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVP 119
Query: 335 RLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQ 394
RLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTLDFGDY D YYSVQTTE EQ
Sbjct: 120 RLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQ 179
Query: 395 IQQLIAGYIDIIL 407
I QLIAGYIDIIL
Sbjct: 180 IAQLIAGYIDIIL 192
>pdb|3FYQ|A Chain A, Structure Of Drosophila Melanogaster Talin Ibs2 Domain
(Residues 1981-2168)
Length = 199
Score = 280 bits (717), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 145/190 (76%), Positives = 163/190 (85%), Gaps = 1/190 (0%)
Query: 1751 SRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDT 1810
SRGTQACINAA TVSGIIGDLDTTI FATAGTLH++ + +FADHRE+IL+TAKALVEDT
Sbjct: 2 SRGTQACINAAHTVSGIIGDLDTTIXFATAGTLHSDGDG-SFADHREHILQTAKALVEDT 60
Query: 1811 KTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTA 1870
K LV GAA +Q+QLA AAQNAVSTI QLAE VK GA SLGS P++QV +INAVKDV +A
Sbjct: 61 KVLVTGAAGTQDQLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVXVINAVKDVASA 120
Query: 1871 LGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTI 1930
LGDLI TK ASGK+INDP LKESA+V V NV+SLLKTVKAVEDEHTRGTRA E+T+
Sbjct: 121 LGDLINCTKLASGKSINDPSXQDLKESARVXVLNVSSLLKTVKAVEDEHTRGTRAXEATV 180
Query: 1931 EAIAQEIRAL 1940
EAI+QEIRAL
Sbjct: 181 EAISQEIRAL 190
>pdb|2KMA|A Chain A, Nmr Structure Of The F0f1 Double Domain (Residues 1-202)
Of The Talin Ferm Domain
Length = 178
Score = 226 bits (576), Expect = 1e-58, Method: Composition-based stats.
Identities = 111/207 (53%), Positives = 142/207 (68%), Gaps = 36/207 (17%)
Query: 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKK 60
M LSLKI I NV KTMQF+PST VYDACR+IR++I EA G D+GLFLSD D KK
Sbjct: 7 MVALSLKISI--GNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKK 64
Query: 61 GVWLEPGRNLEYYILRNGDELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTK 120
G+WLE G+ L+YY+LRNGD +EYR+K R LK+RMLDGT+KT++VDDS+ V ++++ IC +
Sbjct: 65 GIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR 124
Query: 121 IGITNHDEYSLVRENPEDEVENKPNFGXXXXXXXXXXXXXXXXMEQLRKKLKTDDEVNWI 180
IGITNHDEYSLVRE E++ DE+NW+
Sbjct: 125 IGITNHDEYSLVRELMEEK----------------------------------KDELNWL 150
Query: 181 DFSKTLREQGIDENEPVLLRRKFFFSD 207
D +TLREQG++E+E +LLRRKFF+SD
Sbjct: 151 DHGRTLREQGVEEHETLLLRRKFFYSD 177
>pdb|1SJ8|A Chain A, Crystal Structure Of Talin Residues 482-789
Length = 308
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/299 (48%), Positives = 195/299 (65%), Gaps = 8/299 (2%)
Query: 505 LTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQI 564
LT +Q+AL TI + + + L +P LG DAAS W++ +D +KH + SQ+
Sbjct: 7 LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQV 66
Query: 565 AAMNAATAQVVTMTSGEV--TDYSGVESAITSISHTLPEMSKGVRMLAALTP----SGDE 618
A+ A TA VV +T+G+ TDY+ V A+T+IS L EMS+GV++LAAL +G
Sbjct: 67 DAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRP 126
Query: 619 LLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTN-EMQDT 677
LL AA+ L A ++LL++AQP S +PRQNLL AA VG+AS +L +IGES T+ QD
Sbjct: 127 LLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDV 186
Query: 678 LLSLAKAVANTTAALVLKAKSVAS-TLPPNQQTSVITSATKCALATSQLVACTKVVAPTL 736
L+ LA AVA+ AALVLKAKSVA T QT VI +AT+CAL+TSQLVACTKVVAPT+
Sbjct: 187 LMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTI 246
Query: 737 ENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIK 795
+P CQ+QL+ A + VA AVEG V+ D L + + AA VT+ LN+LL H+K
Sbjct: 247 SSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVK 305
>pdb|2JSW|A Chain A, Nmr Structure Of The Talin C-Terminal Actin Binding Site
Length = 189
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 121/190 (63%), Gaps = 8/190 (4%)
Query: 2078 MDP-DDPTVIAETEXXXXXXXXXXXXXXXXXXRPRRSLQETDETLNFDEMILEXXXXXXX 2136
+DP DPTVIAE E +PR +E DE+LNF+E ILE
Sbjct: 2 IDPFTDPTVIAENELLGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAA 61
Query: 2137 XXXXXXXXXXXXQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTF 2196
QREL+ G++ P + DDGQWS +GLISAAR+VAAAT+
Sbjct: 62 ATSALVKAASAAQRELVAQGKVGAIPANALDDGQWS-------QGLISAARMVAAATNNL 114
Query: 2197 VEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRAT 2256
EAAN+ VQG ++EKLISSAKQVA+STAQLLVACKVKAD +S+A RLQ+AGNAVKRA+
Sbjct: 115 CEAANAAVQGHASQEKLISSAKQVAASTAQLLVACKVKADQDSEAMKRLQAAGNAVKRAS 174
Query: 2257 DNLVRAAQQA 2266
DNLV+AAQ+A
Sbjct: 175 DNLVKAAQKA 184
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 168 bits (425), Expect = 4e-41, Method: Composition-based stats.
Identities = 78/122 (63%), Positives = 95/122 (77%), Gaps = 1/122 (0%)
Query: 195 EPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFG 254
E +LLRRKFF+SD N+DS DPVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG
Sbjct: 1 ETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFG 60
Query: 255 DYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPT 314
+N KHKP FL+LK+FLP+ Y+K KG E+KIF HKN +SE++AKV Y K RSL T
Sbjct: 61 PHNEQKHKPGFLELKDFLPKEYIKQKG-ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKT 119
Query: 315 YG 316
YG
Sbjct: 120 YG 121
>pdb|2G35|A Chain A, Nmr Structure Of Talin-Ptb In Complex With Pipki
Length = 100
Score = 166 bits (419), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/99 (75%), Positives = 86/99 (86%)
Query: 312 LPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSN 371
L TYGV+FFLVKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS
Sbjct: 1 LKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPK 60
Query: 372 VFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKK 410
FTLDFGDY D YYSVQTTE EQI QLIAGYIDIILKKK
Sbjct: 61 SFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKK 99
>pdb|2H7D|A Chain A, Solution Structure Of The Talin F3 Domain In Complex With
A Chimeric Beta3 Integrin-Pip Kinase Peptide
pdb|2H7E|A Chain A, Solution Structure Of The Talin F3 Domain In Complex With
A Chimeric Beta3 Integrin-Pip Kinase Peptide- Minimized
Average Structure
Length = 101
Score = 161 bits (407), Expect = 5e-39, Method: Composition-based stats.
Identities = 74/97 (76%), Positives = 85/97 (87%)
Query: 316 GVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTL 375
GV+FFLVKEKMKGKNKLVPRLLG+TK+SV+R+DE+TKE+++ W LT ++RW AS FTL
Sbjct: 5 GVSFFLVKEKMKGKNKLVPRLLGITKESVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTL 64
Query: 376 DFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMS 412
DFGDY D YYSVQTTE EQI QLIAGYIDIILKKK S
Sbjct: 65 DFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKKKS 101
>pdb|2K00|A Chain A, Solution Structure Of The Talin F3 In Complex With Layilin
Cytodomain
Length = 92
Score = 155 bits (391), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/92 (75%), Positives = 80/92 (86%)
Query: 316 GVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTL 375
GV+FFLVKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTL
Sbjct: 1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTL 60
Query: 376 DFGDYSDNYYSVQTTEAEQIQQLIAGYIDIIL 407
DFGDY D YYSVQTTE EQI QLIAGYIDIIL
Sbjct: 61 DFGDYQDGYYSVQTTEGEQIAQLIAGYIDIIL 92
>pdb|2KGX|B Chain B, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 91
Score = 153 bits (386), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/91 (75%), Positives = 80/91 (87%)
Query: 318 TFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDF 377
+FFLVKEKMKGKNKLVPRLLG+TK+SV+R+DE+TKE+++ W LT ++RW AS FTLDF
Sbjct: 1 SFFLVKEKMKGKNKLVPRLLGITKESVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDF 60
Query: 378 GDYSDNYYSVQTTEAEQIQQLIAGYIDIILK 408
GDY D YYSVQTTE EQI QLIAGYIDIILK
Sbjct: 61 GDYQDGYYSVQTTEGEQIAQLIAGYIDIILK 91
>pdb|2KC2|A Chain A, Nmr Structure Of The F1 Domain (Residues 86-202) Of The
Talin
Length = 128
Score = 134 bits (338), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/121 (53%), Positives = 88/121 (72%), Gaps = 4/121 (3%)
Query: 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNF 146
MR LK+RMLDGT+KT++VDDS+ V ++++ IC +IGITNHDEYSLVRE +E K +
Sbjct: 11 MRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRE----LMEEKKDE 66
Query: 147 GXXXXXXXXXXXXXXXXMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFS 206
G ME+L++KL TDDE+NW+D +TLREQG++E+E +LLRRKFF+S
Sbjct: 67 GTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTLREQGVEEHETLLLRRKFFYS 126
Query: 207 D 207
D
Sbjct: 127 D 127
>pdb|1SJ7|A Chain A, Crystal Structure Of Talin Rod 482-655
pdb|1SJ7|B Chain B, Crystal Structure Of Talin Rod 482-655
pdb|1SJ7|C Chain C, Crystal Structure Of Talin Rod 482-655
Length = 174
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 6/168 (3%)
Query: 505 LTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQI 564
LT +Q+AL TI + + + L +P LG DAAS W++ +D +KH + SQ+
Sbjct: 7 LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQV 66
Query: 565 AAMNAATAQVVTMTSGEV--TDYSGVESAITSISHTLPEMSKGVRMLAAL----TPSGDE 618
A+ A TA VV +T+G+ TDY+ V A+T+IS L EMS+GV++LAAL +G
Sbjct: 67 DAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRP 126
Query: 619 LLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEI 666
LL AA+ L A ++LL++AQP S +PRQNLL AA VG+AS +L +I
Sbjct: 127 LLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQI 174
>pdb|2KC1|A Chain A, Nmr Structure Of The F0 Domain (Residues 0-85) Of The
Talin Ferm Domain
Length = 91
Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/86 (65%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKK 60
M LSLKI I NV KTMQF+PST VYDACR+IR++I EA G D+GLFLSD D KK
Sbjct: 7 MVALSLKISI--GNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKK 64
Query: 61 GVWLEPGRNLEYYILRNGDELEYRRK 86
G+WLE G+ L+YY+LRNGD +EYR+K
Sbjct: 65 GIWLEAGKALDYYMLRNGDTMEYRKK 90
>pdb|4F7G|B Chain B, Crystal Structure Of Talin Autoinhibition Complex
Length = 216
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 5/185 (2%)
Query: 1380 APGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRL 1439
APGQ EC+ AI A++S LR+LD+ ++ AVSQ Q+ S + + A EI +
Sbjct: 24 APGQLECETAIAALNSCLRDLDQASLAAVSQ-QLAPREGISQEALHTQMLTAVQEISHLI 82
Query: 1440 EPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLL 1499
EPL AA+ +A + V+Q+ F+ L ++ AS + QQM LLDQTKT+AE L
Sbjct: 83 EPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESAL 142
Query: 1500 QVLHLIKEAGGNP-DAVNIHPDLDESIEATKEALSDITSSLDH---FTGVVNTFVDSITK 1555
Q+L+ KEAGGNP A + L+E+++ EA+ D+T++L+ GVV VDSIT+
Sbjct: 143 QLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAASAAGVVGGMVDSITQ 202
Query: 1556 SMQQI 1560
++ Q+
Sbjct: 203 AINQL 207
>pdb|2KBB|A Chain A, Nmr Structure Of The Talin Rod Domain, 1655-1822
pdb|2KGX|A Chain A, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 174
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
Query: 1380 APGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQ--AANEILT 1437
APGQ EC+ AI A++S LR+LD+ ++ AVSQ P + A T+ A EI
Sbjct: 7 APGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREG---ISQEALHTQMLTAVQEISH 63
Query: 1438 RLEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAEC 1497
+EPL AA+ +A + V+Q+ F+ L ++ AS + QQM LLDQTKT+AE
Sbjct: 64 LIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAES 123
Query: 1498 LLQVLHLIKEAGGNP-DAVNIHPDLDESIEATKEALSDITSSLD 1540
LQ+L+ KEAGGNP A + L+E+++ EA+ D+T++L+
Sbjct: 124 ALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLN 167
>pdb|2KVP|A Chain A, Nmr Structure Of The Talin Vbs3 Domain, 1815-1973
Length = 165
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 1590 SLDHFT-------GVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVGSSK 1642
+D FT GVV VDSIT+++ Q+ + D S+VDY T MV ++K
Sbjct: 1 GIDPFTNEAASAAGVVGGMVDSITQAINQLDEGPM------GDPEGSFVDYQTTMVRTAK 54
Query: 1643 EIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHD 1702
IA QEM+TKS + + + L++QLT Y +L + A +A N E+ + V +
Sbjct: 55 AIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQE 114
Query: 1703 LGTACINTVTMAATCQTSGDD-YTHREFADTNRVLAEKVSQVLYALQAGSR 1752
LG C VT A Q S D YT +E + R ++EKVS VL ALQAG+R
Sbjct: 115 LGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAGNR 165
>pdb|2B0H|A Chain A, Solution Structure Of Vbs3 Fragment Of Talin
Length = 137
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 1624 SDSVDSYVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGA 1683
D S+VDY T MV ++K IA QEM+TKS + + + L++QLT Y +L + A
Sbjct: 8 GDPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPA 67
Query: 1684 VASASNPEVSGRLCGAVHDLGTACINTVTMAATCQTSGDD-YTHREFADTNRVLAEKVSQ 1742
+A N E+ + V +LG C VT A Q S D YT +E + R ++EKVS
Sbjct: 68 AVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSH 127
Query: 1743 VLYALQAGSR 1752
VL ALQAG+R
Sbjct: 128 VLAALQAGNR 137
>pdb|1U89|A Chain A, Solution Structure Of Vbs2 Fragment Of Talin
Length = 139
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 769 DENLNKDLTKAAAEVTKTLNQLLNHIKV--TTTEPAQDVETAVEVMMSSSDRLLAASGDA 826
D L + + AA VT+ LN+LL H+K T PA + A + +++ ++ + ++ GDA
Sbjct: 10 DGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDA 69
Query: 827 PEMVRQARILGQATAQLIQAIKGDAENEPDSEXXXXXXXXXXXXXXXXXXMVEAARQCAS 886
EMVRQARIL QAT+ L+ AIK DAE E D E MVEAA+ A+
Sbjct: 70 GEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAA 129
Query: 887 HP 888
HP
Sbjct: 130 HP 131
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 75.1 bits (183), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 175 DEVNWIDFSKTLREQGIDENEPVLLR--RKFFFSDGNIDSHDPVQLNLLYVQARDAVLDG 232
D V W+ K + + + + EPV KF+ + + + +L ++Q + +LD
Sbjct: 71 DTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDE 130
Query: 233 THPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGI-----EKKIF 287
+ + LA ++GDY+PS HK FL +E LP+ + + + E++I
Sbjct: 131 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERIT 190
Query: 288 SEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRL 347
+ + H G + +A++ Y K + L YGV +F ++ K K LLGV +
Sbjct: 191 AWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNK-----KGTELLLGVDALGLHIY 245
Query: 348 DERTKEIMK-TWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEA---EQIQQLIAGYI 403
D + K ++P +R S FT+ D + + +++ + I QL G
Sbjct: 246 DPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNH 305
Query: 404 DIILKKK 410
D+ ++++
Sbjct: 306 DLFMRRR 312
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 75.1 bits (183), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 175 DEVNWIDFSKTLREQGIDENEPVLLR--RKFFFSDGNIDSHDPVQLNLLYVQARDAVLDG 232
D V W+ K + + + + EPV KF+ + + + +L ++Q + +LD
Sbjct: 71 DTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDE 130
Query: 233 THPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGI-----EKKIF 287
+ + LA ++GDY+PS HK FL +E LP+ + + + E++I
Sbjct: 131 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERIT 190
Query: 288 SEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRL 347
+ + H G + +A++ Y K + L YGV +F ++ K K LLGV +
Sbjct: 191 AWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNK-----KGTELLLGVDALGLHIY 245
Query: 348 DERTKEIMK-TWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEA---EQIQQLIAGYI 403
D + K ++P +R S FT+ D + + +++ + I QL G
Sbjct: 246 DPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNH 305
Query: 404 DIILKKK 410
D+ ++++
Sbjct: 306 DLFMRRR 312
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 75.1 bits (183), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 175 DEVNWIDFSKTLREQGIDENEPVLLR--RKFFFSDGNIDSHDPVQLNLLYVQARDAVLDG 232
D V W+ K + + + + EPV KF+ + + + +L ++Q + +LD
Sbjct: 58 DTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDE 117
Query: 233 THPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGI-----EKKIF 287
+ + LA ++GDY+PS HK FL +E LP+ + + + E++I
Sbjct: 118 KIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERIT 177
Query: 288 SEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRL 347
+ + H G + +A++ Y K + L YGV +F ++ K K LLGV +
Sbjct: 178 AWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNK-----KGTELLLGVDALGLHIY 232
Query: 348 DERTKEIMK-TWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEA---EQIQQLIAGYI 403
D + K ++P +R S FT+ D + + +++ + I QL G
Sbjct: 233 DPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNH 292
Query: 404 DIILKKK 410
D+ ++++
Sbjct: 293 DLFMRRR 299
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 74.3 bits (181), Expect = 7e-13, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 175 DEVNWIDFSKTLREQGIDENEPVLLR--RKFFFSDGNIDSHDPVQLNLLYVQARDAVLDG 232
D V W+ K + + + + EPV KF+ + + + +L ++Q + +LD
Sbjct: 53 DTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDE 112
Query: 233 THPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGI-----EKKIF 287
+ + LA ++GDY+PS HK FL +E LP+ + + + E++I
Sbjct: 113 KVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERIT 172
Query: 288 SEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRL 347
+ + H G + +A++ Y K + L YGV +F ++ K K LLGV +
Sbjct: 173 AWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNK-----KGTELLLGVDALGLHIY 227
Query: 348 DERTKEIMK-TWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEA---EQIQQLIAGYI 403
D + K ++P +R S FT+ D + + +++ + I QL G
Sbjct: 228 DPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNH 287
Query: 404 DIILKKK 410
D+ ++++
Sbjct: 288 DLFMRRR 294
>pdb|2L7A|A Chain A, Solution Structure Of The Talin Vbs2b Domain
Length = 131
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%)
Query: 796 VTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEP 855
T PA + A + +++ ++ + ++ GDA EMVRQARIL QAT+ L+ AIK DAE E
Sbjct: 9 ATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGES 68
Query: 856 DSEXXXXXXXXXXXXXXXXXXMVEAARQCASHPQDIMKQEALVTTVEELRQA 907
D E MVEAA+ A+HP +Q+ L E LR A
Sbjct: 69 DLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMA 120
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + +Q + + P+ R KFF D + + + L ++Q ++A+L+
Sbjct: 58 WLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYC 117
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GDYN HKP +L LPQ ++ + K+ + E H+
Sbjct: 118 PPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHE 177
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ D+ + Y K + L YGV +F +K K
Sbjct: 178 EHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 211
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + +Q + + P+ R KFF D + + + L ++Q ++A+L+
Sbjct: 60 WLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYC 119
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GDYN HKP +L LPQ ++ + K+ + E H+
Sbjct: 120 PPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHE 179
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ D+ + Y K + L YGV +F +K K
Sbjct: 180 EHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 213
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + +Q + + P+ R KFF D + + + L ++Q ++A+L+
Sbjct: 58 WLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYC 117
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GDYN HKP +L LPQ ++ + K+ + E H+
Sbjct: 118 PPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHE 177
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ D+ + Y K + L YGV +F +K K
Sbjct: 178 EHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 211
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + +Q + + P+ R KFF D + + + L ++Q ++A+L+
Sbjct: 60 WLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYC 119
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GDYN HKP +L LPQ ++ + K+ + E H+
Sbjct: 120 PPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHE 179
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ D+ + Y K + L YGV +F +K K
Sbjct: 180 EHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 213
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 72.4 bits (176), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + +Q + + P+ R KFF D + + + L ++Q ++A+L+
Sbjct: 58 WLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYC 117
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GDYN HKP +L LPQ ++ + K+ + E H+
Sbjct: 118 PPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHE 177
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ D+ + Y K + L YGV +F +K K
Sbjct: 178 EHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 211
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 72.4 bits (176), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + +Q + + P+ R KFF D + + + L ++Q ++A+L+
Sbjct: 60 WLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYC 119
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GDYN HKP +L LPQ ++ + K+ + E H+
Sbjct: 120 PPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHE 179
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ D+ + Y K + L YGV +F +K K
Sbjct: 180 EHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 213
>pdb|1R0D|A Chain A, Hip1r Thatch Domain Core
pdb|1R0D|B Chain B, Hip1r Thatch Domain Core
pdb|1R0D|D Chain D, Hip1r Thatch Domain Core
pdb|1R0D|E Chain E, Hip1r Thatch Domain Core
pdb|1R0D|F Chain F, Hip1r Thatch Domain Core
pdb|1R0D|G Chain G, Hip1r Thatch Domain Core
pdb|1R0D|H Chain H, Hip1r Thatch Domain Core
pdb|1R0D|I Chain I, Hip1r Thatch Domain Core
Length = 206
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 2149 QRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVVQGAG 2208
Q+E++++GR ++ ++ + +W+EGLISA++ V VEAA+ VV G
Sbjct: 80 QKEIVESGR------GAATQQEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHTG 133
Query: 2209 TEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRATDNLVRAAQQAIQ 2268
E+LI + ++A+STAQL+ A KVKA+ S RLQ V N+V + + +
Sbjct: 134 KYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQE 193
Query: 2269 QDEER 2273
Q E+R
Sbjct: 194 QIEDR 198
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + Q + + P+L R KF+ D + + + L ++Q ++ +L+
Sbjct: 58 WLKLNKKVTAQDVRKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYC 117
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GD+N HK +L + LPQ ++ + K + E H+
Sbjct: 118 PPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHE 177
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ DA + Y K + L YGV +F +K K
Sbjct: 178 EHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNK 211
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + Q + + P+L R KF+ D + + + L ++Q ++ +L+
Sbjct: 58 WLKLNKKVTAQDVRKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYC 117
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GD+N HK +L + LPQ ++ + K + E H+
Sbjct: 118 PPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHE 177
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ DA + Y K + L YGV +F +K K
Sbjct: 178 EHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNK 211
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 176 EVNWIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGT 233
++ WI K + +Q + + P+ R KF+ D + + L L Y+Q ++A+L
Sbjct: 55 DLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDE 114
Query: 234 HPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGI-----EKKIFS 288
+ + LA + GD+NP+ H P FL LPQ + E+ I +
Sbjct: 115 IYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITN 174
Query: 289 EHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
+ H G+ DA + Y K + L YGV +F ++ K
Sbjct: 175 WWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNK 211
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 65.5 bits (158), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ +K + Q + + P+L R KF+ D + + + L ++Q ++ +L+
Sbjct: 55 WLKLNKKVTAQDVRKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYC 114
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSE-----HK 291
+ A LA ++GD+N HK +L + LPQ ++ + K + E H+
Sbjct: 115 PPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHE 174
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G DA + Y K + L YGV +F +K K
Sbjct: 175 EHRGXLREDAVLEYLKIAQDLEXYGVNYFSIKNK 208
>pdb|2L10|A Chain A, Structure Of The Talin Rod Residues, Domain C
Length = 158
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 951 TDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKN-PANLPASSKQYSHSLQNLVDI 1009
+D P ST Q L+ AA GL++ E++ + + P +L +S ++ ++
Sbjct: 26 SDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRGTPQDLARASGRFGQDFSTFLEA 85
Query: 1010 GMEIISTTESRETQXXXXXXXXXXXXXXXXXXXXARSAALDPSASNSKSQLSAAARNVAD 1069
G+E+ S+E + A++ + DP++ N KSQL+AAAR V D
Sbjct: 86 GVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTD 145
Query: 1070 SINNLLNICT 1079
SIN L+ +CT
Sbjct: 146 SINQLITMCT 155
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 179 WIDFSKTLREQGIDENEPVLL--RRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPV 236
W+ K + Q + + P+ R KF+ D + + L ++Q ++ +L
Sbjct: 57 WLKLDKKVSAQEVRKENPLQFKFRAKFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYC 116
Query: 237 TQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGI-----EKKIFSEHK 291
+ A L +FGDYN HK +L + +PQ + + E +I H
Sbjct: 117 PPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHA 176
Query: 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
H G+ + +A + Y K + L YG+ +F +K K
Sbjct: 177 EHRGMLKDNAMLEYLKIAQDLEMYGINYFEIKNK 210
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 21/192 (10%)
Query: 174 DDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLN------LLYVQARD 227
+++ NW+D +K +++Q KF+ DP QL+ L +Q RD
Sbjct: 52 ENQKNWLDPAKEIKKQVRSGAWHFSFNVKFY-------PPDPAQLSEDITRYYLCLQLRD 104
Query: 228 AVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIF 287
++ G P + L + GDY+P + ++ F P K +E K+
Sbjct: 105 DIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGSDYISEFRFAPN---HTKELEDKVI 161
Query: 288 SEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRL 347
HK+H G++ +A++ + + + L YGV K+ ++ V +LGV +L
Sbjct: 162 ELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKD-----SEGVEIMLGVCASGLLIY 216
Query: 348 DERTKEIMKTWP 359
+R + WP
Sbjct: 217 RDRLRINRFAWP 228
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 21/192 (10%)
Query: 174 DDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLN------LLYVQARD 227
+++ NW+D +K +++Q KF+ DP QL+ L +Q RD
Sbjct: 52 ENQKNWLDPAKEIKKQVRSGAWHFSFNVKFY-------PPDPAQLSEDITRYYLCLQLRD 104
Query: 228 AVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIF 287
++ G P + L + GDY+P + ++ F P K +E K+
Sbjct: 105 DIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGSDYISEFRFAPN---HTKELEDKVI 161
Query: 288 SEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRL 347
HK+H G++ +A++ + + + L YGV K+ ++ V +LGV +L
Sbjct: 162 ELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKD-----SEGVEIMLGVCASGLLIY 216
Query: 348 DERTKEIMKTWP 359
+R + WP
Sbjct: 217 RDRLRINRFAWP 228
>pdb|3S90|C Chain C, Human Vinculin Head Domain Vh1 (Residues 1-252) In Complex
With Murine Talin (Vbs33; Residues 1512-1546)
pdb|3S90|D Chain D, Human Vinculin Head Domain Vh1 (Residues 1-252) In Complex
With Murine Talin (Vbs33; Residues 1512-1546)
Length = 40
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 1237 ASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKAL 1271
AS++T NP AKR FVQSAK+VANSTANLV+ IKAL
Sbjct: 6 ASARTANPTAKRQFVQSAKEVANSTANLVKTIKAL 40
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 214 DPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFL---DLKE 270
DP+ + +L+ +AR +L G + LA + I +G+Y KHK FL +LK
Sbjct: 110 DPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKS 169
Query: 271 FLPQSYVKVKG--IEKKIFSEHKNHVGLSELDAK------VLYTKTCRSLPTYGVTFF-- 320
+P + +K K +I E+KN + SE +K ++ + C +PTYG FF
Sbjct: 170 IVPVTKLKSKAPHWTNRILHEYKN-LSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTG 228
Query: 321 -LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIM 355
+ + +K++P +GV + L+ TK ++
Sbjct: 229 QIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALL 264
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 214 DPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFL---DLKE 270
DP+ + +L+ +AR +L G + LA + I +G+Y KHK FL +LK
Sbjct: 110 DPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKS 169
Query: 271 FLPQSYVKVKG--IEKKIFSEHKNHVGLSELDAK------VLYTKTCRSLPTYGVTFF-- 320
+P + +K K +I E+KN + SE +K ++ + C +PTYG FF
Sbjct: 170 IVPVTKLKSKAPHWTNRILHEYKN-LSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTG 228
Query: 321 -LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIM 355
+ + +K++P +GV + L+ TK ++
Sbjct: 229 QIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALL 264
>pdb|2QDQ|A Chain A, Crystal Structure Of The Talin Dimerisation Domain
pdb|2QDQ|B Chain B, Crystal Structure Of The Talin Dimerisation Domain
Length = 50
Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 2281 MVGGIAQEINARSEVLRIERQLEEARGRLTAIRQAKYKL 2319
MVGGIAQ I A+ E+LR ER+LEEAR +L IRQ +YK
Sbjct: 3 MVGGIAQIIAAQEEMLRKERELEEARKKLAQIRQQQYKF 41
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 99/250 (39%), Gaps = 55/250 (22%)
Query: 199 LRRKFFFS-----DGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQF 253
L KF+F D + D V+ ++ QA +AV+ G HP ++ LA ++
Sbjct: 280 LPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQ 339
Query: 254 GDYNPSKHKPPFLD------LKEFLPQS--------YVK--VKGIEKKIFSEHKNHVGLS 297
GDY PP + LK + QS ++K V I + + G++
Sbjct: 340 GDYTLHAAIPPLEEVYSLQRLKARISQSTKTQMLDMWIKEEVSSARASIIDKWRKFQGMN 399
Query: 298 ELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPR--LLGVTKDSVLRLDERTKEIM 355
+ A Y + P YG T F V+ K G P+ LGV+ D+V +
Sbjct: 400 QEQAMAKYMALIKEWPGYGSTLFDVECKEGG----FPQELWLGVSADAV--------SVY 447
Query: 356 KTWPLTTVRRWGASSNVF----TLDFGDYSDNYYSV---------QTTEAEQIQQLIAGY 402
K R G VF L FG N Y + +T+E + +L+ Y
Sbjct: 448 K-------RGEGRPLEVFQYEHILSFGAPLANTYKIVVDERELLFETSEVVDVAKLMKAY 500
Query: 403 IDIILKKKMS 412
I +I+KK+ S
Sbjct: 501 ISMIVKKRYS 510
>pdb|4DJ9|B Chain B, Human Vinculin Head Domain Vh1 (Residues 1-258) In Complex
With The Talin Vinculin Binding Site 50 (Vbs50, Residues
2078-2099)
Length = 29
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 1855 EAQVLLINAVKDVTTALGDLIQATKAASG 1883
E QV+LINAVKDV ALGDLI ATKAA+G
Sbjct: 1 ETQVVLINAVKDVAKALGDLISATKAAAG 29
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 179 WIDFSKTLREQ--GIDENEPVLLRRKFFFSDGNIDSHDPVQLN------LLYVQARDAVL 230
W+D +K +++Q G+ N KF+ DP QL L +Q R ++
Sbjct: 55 WLDSAKEIKKQVRGVPWN--FTFNVKFY-------PPDPAQLTEDITRYYLCLQLRQDIV 105
Query: 231 DGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEH 290
G P + L + GDY+P H ++ + P + K +E+K+ H
Sbjct: 106 AGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPN---QTKELEEKVMELH 162
Query: 291 KNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDER 350
K++ ++ A + + + + L YGV K+ ++G V +LGV +L ++
Sbjct: 163 KSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKD-LEG----VDIILGVCSSGLLVYKDK 217
Query: 351 TKEIMKTWP 359
+ WP
Sbjct: 218 LRINRFPWP 226
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 179 WIDFSKTLREQ--GIDENEPVLLRRKFFFSDGNIDSHDPVQLN------LLYVQARDAVL 230
W+D +K +++Q G+ N KF+ DP QL L +Q R ++
Sbjct: 72 WLDSAKEIKKQVRGVPWN--FTFNVKFY-------PPDPAQLTEDITRYYLCLQLRQDIV 122
Query: 231 DGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEH 290
G P + L + GDY+P H ++ + P + K +E+K+ H
Sbjct: 123 AGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPN---QTKELEEKVMELH 179
Query: 291 KNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDER 350
K++ ++ A + + + + L YGV K+ ++G V +LGV +L ++
Sbjct: 180 KSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKD-LEG----VDIILGVCSSGLLVYKDK 234
Query: 351 TKEIMKTWP 359
+ WP
Sbjct: 235 LRINRFPWP 243
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 99/264 (37%), Gaps = 67/264 (25%)
Query: 199 LRRKFFFS-----DGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQF 253
L KF+F D + D V+ ++ QA +AV+ G HP ++ LA ++
Sbjct: 297 LPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQ 356
Query: 254 GDYNPSKHKPPFLD------LKEFLPQS------------------------YVK--VKG 281
GDY PP + LK + QS ++K V
Sbjct: 357 GDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSS 416
Query: 282 IEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTK 341
I + + G+++ A Y + P YG T F V+ K G + + LGV+
Sbjct: 417 ARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQEL--WLGVSA 474
Query: 342 DSVLRLDERTKEIMKTWPLTTVRRWGASSNVF----TLDFGDYSDNYYSV---------Q 388
D+V + K R G VF L FG N Y + +
Sbjct: 475 DAV--------SVYK-------RGEGRPLEVFQYEHILSFGAPLANTYKIVVDERELLFE 519
Query: 389 TTEAEQIQQLIAGYIDIILKKKMS 412
T+E + +L+ YI +I+KK+ S
Sbjct: 520 TSEVVDVAKLMKAYISMIVKKRYS 543
>pdb|1ZVZ|B Chain B, Vinculin Head (0-258) In Complex With The Talin Rod
Residue 820-844
Length = 25
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 828 EMVRQARILGQATAQLIQAIKGDA 851
EMVRQARIL QAT+ L+ AIK DA
Sbjct: 2 EMVRQARILAQATSDLVNAIKADA 25
>pdb|1ZW3|B Chain B, Vinculin Head (0-258) In Complex With The Talin Rod Residues
1630-1652
Length = 25
Score = 38.5 bits (88), Expect = 0.048, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1353 PTWKLLADHSKQVSDSIKRLVTSIR 1377
P W +LA HS+ VSDSIK+L+TS+R
Sbjct: 1 PRWSVLAGHSRTVSDSIKKLITSMR 25
>pdb|2IXV|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (E94q Mutant)
pdb|2J8G|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (E94q Mutant In Complex
With A Tetrasaccharide-Pentapeptide)
pdb|2J8F|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (e94q Mutant In Complex
With A Disaccharide-pentapeptide)
Length = 339
Score = 34.7 bits (78), Expect = 0.68, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 1214 QQILTAATVIA-KHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA-------NLV 1265
+Q+ T T+I +++ N C A + +NP+ HF + DVA + N+
Sbjct: 24 EQMGTTNTIIKISESTTYLNPCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVP 83
Query: 1266 QEIKALDMNYN-------EKNHQVCTQATKPLLDAVDSLVSFAYSP 1304
++K L ++Y + N C + + + DA + ++Y P
Sbjct: 84 MQVKYLVLDYQDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKP 129
>pdb|1H09|A Chain A, Multimodular Pneumococcal Cell Wall Endolysin From Phage
Cp-1
Length = 338
Score = 34.7 bits (78), Expect = 0.73, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 1214 QQILTAATVIA-KHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA-------NLV 1265
+Q+ T T+I +++ N C A + +NP+ HF + DVA + N+
Sbjct: 23 EQMGTTNTIIKISESTTYLNPCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVP 82
Query: 1266 QEIKALDMNYN-------EKNHQVCTQATKPLLDAVDSLVSFAYSP 1304
++K L ++Y + N C + + + DA + ++Y P
Sbjct: 83 MQVKYLVLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKP 128
>pdb|2IXU|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (Wild-Type Endolysin)
Length = 339
Score = 34.7 bits (78), Expect = 0.73, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 1214 QQILTAATVIA-KHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA-------NLV 1265
+Q+ T T+I +++ N C A + +NP+ HF + DVA + N+
Sbjct: 24 EQMGTTNTIIKISESTTYLNPCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVP 83
Query: 1266 QEIKALDMNYN-------EKNHQVCTQATKPLLDAVDSLVSFAYSP 1304
++K L ++Y + N C + + + DA + ++Y P
Sbjct: 84 MQVKYLVLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKP 129
>pdb|1OBA|A Chain A, Multimodular Pneumococcal Cell Wall Endolysin From Phage
Cp-1 Complexed With Choline
Length = 339
Score = 34.3 bits (77), Expect = 0.87, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 1214 QQILTAATVIA-KHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA-------NLV 1265
+Q+ T T+I +++ N C A + +NP+ HF + DVA + N+
Sbjct: 24 EQMGTTNTIIKISESTTYLNRCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVP 83
Query: 1266 QEIKALDMNYN-------EKNHQVCTQATKPLLDAVDSLVSFAYSP 1304
++K L ++Y + N C + + + DA + ++Y P
Sbjct: 84 MQVKYLVLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKP 129
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate Lyase
From E. Coli
Length = 482
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 53/187 (28%)
Query: 1266 QEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPIL 1325
++KA++ EK ++ P L AV + FA + E +N SH
Sbjct: 117 HDVKAVEYFLKEKVAEI------PELHAVSEFIHFACTSEDINNLSH------------- 157
Query: 1326 SAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-----A 1380
M+KTA+ + P + +Q+ D IK L RD+
Sbjct: 158 ----------ALMLKTARDEVILP-----------YWRQLIDGIKDLAVQYRDIPLLSRT 196
Query: 1381 PGQ--------KECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAA 1432
GQ KE + + R+L++V +L G + +YN+ Q +
Sbjct: 197 HGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFS 256
Query: 1433 NEILTRL 1439
E +T L
Sbjct: 257 EEFVTSL 263
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase
Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase
Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 53/187 (28%)
Query: 1266 QEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPIL 1325
++KA++ EK ++ P L AV + FA + E +N SH
Sbjct: 91 HDVKAVEYFLKEKVAEI------PELHAVSEFIHFACTSEDINNLSH------------- 131
Query: 1326 SAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-----A 1380
M+KTA+ + P + +Q+ D +K L RD+
Sbjct: 132 ----------ALMLKTARDEVILP-----------YWRQLIDGLKDLAVQYRDIPLLSRT 170
Query: 1381 PGQ--------KECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAA 1432
GQ KE + + R+L++V +L G + +YN+ Q +
Sbjct: 171 AGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFS 230
Query: 1433 NEILTRL 1439
E +T L
Sbjct: 231 EEFVTSL 237
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase
Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase
Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 53/187 (28%)
Query: 1266 QEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPIL 1325
++KA++ EK ++ P L AV + FA + E +N SH
Sbjct: 91 HDVKAVEYFLKEKVAEI------PELHAVSEFIHFACTSEDINNLSH------------- 131
Query: 1326 SAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-----A 1380
M+KTA+ + P + +Q+ D +K L RD+
Sbjct: 132 ----------ALMLKTARDEVILP-----------YWRQLIDGLKDLAVQYRDIPLLSRT 170
Query: 1381 PGQ--------KECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAA 1432
GQ KE + + R+L++V +L G + +YN+ Q +
Sbjct: 171 NGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFS 230
Query: 1433 NEILTRL 1439
E +T L
Sbjct: 231 EEFVTSL 237
>pdb|1J0W|A Chain A, Crystal Structure Analysis Of The Dok-5 Ptb Domain
pdb|1J0W|B Chain B, Crystal Structure Analysis Of The Dok-5 Ptb Domain
Length = 103
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 357 TWPLTTVRRWGASSNVFTLDFG---DYSDNYYSVQTTEAEQIQQLI 399
+WPL+ +RR+G + FT + G + + + QT + E I Q +
Sbjct: 46 SWPLSALRRYGRDTTWFTFEAGRXCETGEGLFIFQTRDGEAIYQKV 91
>pdb|2J9V|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C-
Terminus
Length = 99
Score = 31.6 bits (70), Expect = 5.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 1249 HFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVN 1308
H + +AK VA +T N + + AL +NYN K+ PLL + ++ +F N
Sbjct: 2 HHMFNAKYVAEATGNFITVMDALKLNYNAKDQ------LHPLLAELLISINRVTRDDFEN 55
Query: 1309 RS 1310
RS
Sbjct: 56 RS 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.125 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,993,120
Number of Sequences: 62578
Number of extensions: 2137060
Number of successful extensions: 5171
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4985
Number of HSP's gapped (non-prelim): 139
length of query: 2347
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2232
effective length of database: 7,776,867
effective search space: 17357967144
effective search space used: 17357967144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)