Query psy15599
Match_columns 2347
No_of_seqs 558 out of 1689
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:44:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4261|consensus 100.0 2E-167 5E-172 1515.4 46.7 986 1-1055 1-1002(1003)
2 KOG0980|consensus 100.0 6E-70 1.3E-74 677.7 55.8 378 1924-2321 592-979 (980)
3 smart00307 ILWEQ I/LWEQ domain 100.0 2E-53 4.2E-58 472.4 23.8 196 2118-2319 1-199 (200)
4 PF01608 I_LWEQ: I/LWEQ domain 100.0 2.5E-47 5.5E-52 405.8 13.8 149 2171-2319 1-151 (152)
5 KOG3727|consensus 100.0 1.5E-45 3.3E-50 441.3 4.7 399 2-415 7-647 (664)
6 KOG4261|consensus 100.0 1.4E-37 3E-42 381.7 20.5 818 3-905 43-981 (1003)
7 PF09141 Talin_middle: Talin, 100.0 3.4E-37 7.4E-42 328.8 12.7 156 508-663 1-161 (161)
8 KOG3530|consensus 100.0 1.4E-33 3E-38 344.7 23.0 275 84-406 7-291 (616)
9 smart00295 B41 Band 4.1 homolo 100.0 1.7E-28 3.7E-33 285.8 19.9 200 85-320 1-207 (207)
10 KOG0792|consensus 99.9 1.5E-25 3.3E-30 287.7 22.7 279 87-409 22-313 (1144)
11 KOG3529|consensus 99.9 8.4E-26 1.8E-30 289.9 10.4 288 84-414 10-308 (596)
12 PF08913 VBS: Vinculin Binding 99.9 1.4E-23 3.1E-28 219.3 13.3 124 1629-1752 1-125 (125)
13 KOG3527|consensus 99.9 9.3E-23 2E-27 257.1 15.2 277 82-406 26-309 (975)
14 PF01044 Vinculin: Vinculin fa 99.9 2.2E-19 4.8E-24 248.1 43.4 459 595-1081 406-946 (968)
15 KOG3552|consensus 99.8 1.2E-19 2.5E-24 227.7 8.2 286 88-408 184-497 (1298)
16 PF08913 VBS: Vinculin Binding 99.8 2.6E-18 5.7E-23 180.0 13.7 122 1791-1914 1-122 (125)
17 KOG0980|consensus 99.8 3E-17 6.5E-22 208.1 25.3 303 512-854 590-926 (980)
18 PF00373 FERM_M: FERM central 99.7 8.8E-18 1.9E-22 180.4 12.1 109 212-320 5-126 (126)
19 PF01044 Vinculin: Vinculin fa 99.7 2.5E-12 5.4E-17 178.9 68.2 862 715-1750 42-946 (968)
20 KOG0248|consensus 99.6 1.3E-16 2.8E-21 196.2 7.6 208 196-404 675-896 (936)
21 KOG4371|consensus 99.5 8.1E-14 1.7E-18 178.5 10.1 300 86-413 498-823 (1332)
22 KOG3531|consensus 99.5 2.1E-14 4.5E-19 180.9 3.0 271 86-406 38-316 (1036)
23 KOG3681|consensus 99.4 1.5E-09 3.3E-14 139.5 44.8 385 648-1081 347-790 (835)
24 KOG4257|consensus 99.4 8.2E-13 1.8E-17 163.1 10.6 288 89-409 4-326 (974)
25 KOG3784|consensus 99.3 1.6E-11 3.5E-16 146.9 17.4 239 88-407 108-360 (407)
26 PF09379 FERM_N: FERM N-termin 99.1 7.5E-11 1.6E-15 116.7 7.7 77 92-205 1-80 (80)
27 smart00307 ILWEQ I/LWEQ domain 99.0 2.1E-09 4.4E-14 121.6 13.7 128 705-887 4-146 (200)
28 cd00836 FERM_C FERM_C domain. 98.9 9.9E-09 2.1E-13 104.5 10.3 86 314-406 1-91 (92)
29 PF01608 I_LWEQ: I/LWEQ domain 98.6 2.3E-07 5.1E-12 100.8 9.8 57 738-794 5-61 (152)
30 PF09380 FERM_C: FERM C-termin 98.1 1.5E-05 3.3E-10 80.9 10.5 79 333-411 5-87 (90)
31 KOG3681|consensus 97.7 0.45 9.7E-06 63.7 62.0 242 616-883 85-336 (835)
32 PF02174 IRS: PTB domain (IRS- 97.4 0.0011 2.4E-08 68.8 10.9 76 331-406 20-98 (100)
33 KOG4371|consensus 97.4 9.6E-05 2.1E-09 97.4 3.7 156 87-277 37-194 (1332)
34 cd01787 GRB7_RA RA (RAS-associ 97.2 0.0021 4.6E-08 63.4 9.9 51 87-137 2-52 (85)
35 cd00824 PTBI IRS-like phosphot 97.1 0.0042 9.1E-08 64.4 11.1 78 332-409 20-100 (104)
36 PF09141 Talin_middle: Talin, 97.0 0.0011 2.4E-08 73.0 6.3 83 591-693 79-161 (161)
37 smart00310 PTBI Phosphotyrosin 96.9 0.0058 1.3E-07 62.5 9.8 73 333-405 20-95 (98)
38 cd00435 ACBP Acyl CoA binding 96.8 0.0038 8.1E-08 62.7 7.9 81 221-316 4-85 (85)
39 cd01203 DOK_PTB Downstream of 96.8 0.0048 1E-07 63.1 8.2 75 332-406 20-97 (104)
40 cd01202 FRS2 Fibroblast growth 96.7 0.0079 1.7E-07 60.9 9.2 89 315-405 3-94 (102)
41 KOG4335|consensus 96.5 0.00082 1.8E-08 83.9 0.8 170 192-362 323-507 (558)
42 KOG0994|consensus 96.4 7.5 0.00016 53.9 39.2 255 1633-1930 1462-1730(1758)
43 cd01777 SNX27_RA Ubiquitin dom 96.3 0.0058 1.3E-07 60.5 5.3 48 89-136 3-52 (87)
44 PF00788 RA: Ras association ( 96.1 0.019 4.2E-07 58.4 8.0 45 88-132 3-52 (93)
45 PF00887 ACBP: Acyl CoA bindin 95.9 0.02 4.3E-07 58.0 7.0 77 221-312 4-82 (87)
46 KOG4335|consensus 95.4 0.0089 1.9E-07 75.0 2.8 174 194-368 197-408 (558)
47 PTZ00458 acyl CoA binding prot 95.3 0.058 1.3E-06 54.7 7.9 81 221-316 4-87 (90)
48 COG4281 ACB Acyl-CoA-binding p 95.2 0.053 1.1E-06 51.6 6.6 84 218-316 2-86 (87)
49 KOG3751|consensus 95.0 0.32 7E-06 61.8 14.2 51 86-136 187-237 (622)
50 cd01768 RA RA (Ras-associating 94.7 0.072 1.6E-06 53.8 6.7 48 90-137 2-53 (87)
51 smart00314 RA Ras association 93.7 0.18 3.9E-06 51.4 7.2 48 88-135 3-54 (90)
52 smart00455 RBD Raf-like Ras-bi 93.6 0.13 2.9E-06 49.8 5.8 46 89-135 1-46 (70)
53 cd01760 RBD Ubiquitin-like dom 93.5 0.15 3.3E-06 49.7 5.8 47 89-136 1-47 (72)
54 PF09379 FERM_N: FERM N-termin 92.5 0.22 4.8E-06 49.4 5.6 65 8-76 1-65 (80)
55 KOG0817|consensus 92.3 0.37 8E-06 52.9 7.4 92 217-323 4-96 (142)
56 cd01776 Rin1_RA Ubiquitin doma 92.0 0.19 4.2E-06 49.0 4.2 52 6-64 2-56 (87)
57 PF00640 PID: Phosphotyrosine 91.7 1 2.2E-05 49.4 10.3 80 329-409 48-136 (140)
58 cd01817 RGS12_RBD Ubiquitin do 91.7 0.41 8.9E-06 46.4 6.0 45 90-135 2-46 (73)
59 smart00295 B41 Band 4.1 homolo 91.4 0.39 8.4E-06 56.3 7.0 69 2-74 2-70 (207)
60 PF11976 Rad60-SLD: Ubiquitin- 91.1 0.85 1.8E-05 44.3 7.8 46 89-134 2-47 (72)
61 PF02196 RBD: Raf-like Ras-bin 90.9 0.42 9.1E-06 46.6 5.5 47 88-135 1-47 (71)
62 cd01776 Rin1_RA Ubiquitin doma 90.7 0.54 1.2E-05 46.1 5.8 47 90-136 2-52 (87)
63 cd01784 rasfadin_RA Ubiquitin- 90.3 0.52 1.1E-05 47.0 5.4 48 91-138 5-54 (87)
64 cd01216 Fe65 Fe65 Phosphotyros 89.8 1.8 3.9E-05 46.9 9.6 78 332-409 39-121 (123)
65 cd01215 Dab Disabled (Dab) Pho 89.5 1.9 4.1E-05 47.3 9.5 80 331-410 51-136 (139)
66 cd01785 PDZ_GEF_RA Ubiquitin-l 89.1 0.73 1.6E-05 44.7 5.2 51 87-137 2-53 (85)
67 PF14560 Ubiquitin_2: Ubiquiti 88.5 1 2.2E-05 45.7 6.2 75 6-84 2-81 (87)
68 cd01778 RASSF1_RA Ubiquitin-li 88.3 1.2 2.5E-05 45.6 6.3 47 88-134 7-54 (96)
69 cd01807 GDX_N ubiquitin-like d 88.1 2.2 4.8E-05 41.8 8.2 45 89-134 2-46 (74)
70 cd00934 PTB Phosphotyrosine-bi 87.9 2.6 5.6E-05 45.1 9.4 71 331-402 40-118 (123)
71 PF08416 PTB: Phosphotyrosine- 87.8 1.4 3E-05 48.3 7.2 81 327-407 34-125 (131)
72 PF00789 UBX: UBX domain; Int 87.4 2.6 5.5E-05 42.2 8.3 50 87-136 6-55 (82)
73 cd01784 rasfadin_RA Ubiquitin- 87.1 1.1 2.4E-05 44.7 5.3 80 8-97 6-86 (87)
74 cd01807 GDX_N ubiquitin-like d 85.7 1.5 3.1E-05 43.1 5.4 61 14-84 10-70 (74)
75 cd01268 Numb Numb Phosphotyros 85.6 5 0.00011 44.3 10.0 79 332-410 49-135 (138)
76 cd01799 Hoil1_N Ubiquitin-like 85.0 1.5 3.2E-05 43.3 5.1 66 6-82 1-71 (75)
77 PF00788 RA: Ras association ( 84.6 3.4 7.4E-05 41.9 7.8 68 4-73 3-74 (93)
78 cd01763 Sumo Small ubiquitin-r 84.6 5.5 0.00012 40.5 9.1 49 85-134 9-57 (87)
79 cd01798 parkin_N amino-termina 84.5 3.2 6.9E-05 40.2 7.1 44 90-134 1-44 (70)
80 cd01796 DDI1_N DNA damage indu 84.4 1.6 3.5E-05 42.5 5.0 69 6-84 1-70 (71)
81 cd01267 CED6_AIDA1b Phosphotyr 84.2 5.6 0.00012 43.7 9.7 74 332-405 44-126 (132)
82 PF00240 ubiquitin: Ubiquitin 84.2 1.9 4E-05 41.5 5.3 64 14-87 5-68 (69)
83 PF11470 TUG-UBL1: GLUT4 regul 84.0 2.6 5.6E-05 40.5 6.0 42 92-134 1-42 (65)
84 smart00462 PTB Phosphotyrosine 84.0 6 0.00013 43.1 9.9 79 330-408 41-126 (134)
85 cd01794 DC_UbP_C dendritic cel 83.9 3.1 6.8E-05 40.5 6.7 44 90-134 1-44 (70)
86 cd01793 Fubi Fubi ubiquitin-li 83.8 1.9 4.2E-05 42.2 5.3 67 7-84 2-68 (74)
87 cd01818 TIAM1_RBD Ubiquitin do 83.4 1.8 3.8E-05 42.2 4.6 38 91-128 3-40 (77)
88 cd01806 Nedd8 Nebb8-like ubiq 83.2 6.5 0.00014 38.4 8.8 44 89-133 2-45 (76)
89 cd01806 Nedd8 Nebb8-like ubiq 83.0 2.3 5E-05 41.5 5.6 62 15-86 11-72 (76)
90 cd01812 BAG1_N Ubiquitin-like 83.0 2.4 5.1E-05 41.0 5.5 67 7-83 2-68 (71)
91 cd01810 ISG15_repeat2 ISG15 ub 82.5 4.9 0.00011 39.4 7.6 44 90-134 1-44 (74)
92 cd01809 Scythe_N Ubiquitin-lik 82.3 6.1 0.00013 38.1 8.1 44 89-133 2-45 (72)
93 cd01802 AN1_N ubiquitin-like d 82.2 2.3 5E-05 44.7 5.4 61 14-84 37-97 (103)
94 cd01796 DDI1_N DNA damage indu 82.1 4.7 0.0001 39.3 7.2 44 90-134 1-45 (71)
95 PTZ00044 ubiquitin; Provisiona 81.9 2.5 5.4E-05 41.5 5.3 68 7-84 2-70 (76)
96 smart00166 UBX Domain present 81.2 8.6 0.00019 38.4 8.9 48 88-136 5-52 (80)
97 cd01797 NIRF_N amino-terminal 79.5 3 6.6E-05 41.5 5.0 60 16-85 13-73 (78)
98 KOG3535|consensus 79.3 4.5 9.7E-05 50.4 7.2 60 333-392 92-155 (557)
99 cd01768 RA RA (Ras-associating 78.6 3.3 7.2E-05 41.8 5.1 64 6-71 2-68 (87)
100 cd01810 ISG15_repeat2 ISG15 ub 78.1 3 6.5E-05 40.9 4.4 62 14-85 8-69 (74)
101 PTZ00044 ubiquitin; Provisiona 77.9 11 0.00024 36.9 8.5 45 89-134 2-46 (76)
102 cd01782 AF6_RA_repeat1 Ubiquit 77.7 7.7 0.00017 40.5 7.2 51 89-139 23-81 (112)
103 cd01792 ISG15_repeat1 ISG15 ub 77.6 13 0.00027 37.2 8.8 43 88-131 3-45 (80)
104 cd01803 Ubiquitin Ubiquitin. U 77.4 11 0.00025 36.7 8.3 44 89-133 2-45 (76)
105 cd01273 CED-6 CED-6 Phosphotyr 77.1 14 0.00031 41.2 9.9 73 332-404 54-134 (142)
106 PF11543 UN_NPL4: Nuclear pore 77.1 3.9 8.4E-05 41.0 4.9 47 87-135 4-50 (80)
107 PF08817 YukD: WXG100 protein 77.0 4.6 0.0001 40.2 5.5 73 87-200 2-79 (79)
108 PF06115 DUF956: Domain of unk 76.9 5.2 0.00011 42.4 5.9 63 339-403 29-98 (118)
109 cd01808 hPLIC_N Ubiquitin-like 76.3 4.7 0.0001 39.2 5.2 59 16-84 11-69 (71)
110 cd00196 UBQ Ubiquitin-like pro 76.2 4.2 9.2E-05 36.5 4.7 44 91-135 1-44 (69)
111 cd01809 Scythe_N Ubiquitin-lik 76.0 5.4 0.00012 38.5 5.6 68 6-84 3-70 (72)
112 cd01792 ISG15_repeat1 ISG15 ub 75.7 6.1 0.00013 39.4 5.9 73 4-85 3-75 (80)
113 cd01803 Ubiquitin Ubiquitin. U 75.6 4.9 0.00011 39.3 5.2 69 7-85 2-71 (76)
114 PF11976 Rad60-SLD: Ubiquitin- 75.1 4.6 0.0001 39.2 4.8 69 5-83 2-70 (72)
115 cd01798 parkin_N amino-termina 74.8 4.5 9.7E-05 39.2 4.6 61 14-84 8-68 (70)
116 cd01767 UBX UBX (ubiquitin reg 74.8 15 0.00032 36.4 8.4 46 89-136 4-49 (77)
117 cd01805 RAD23_N Ubiquitin-like 74.4 18 0.00039 35.5 8.9 46 89-134 2-48 (77)
118 PF12026 DUF3513: Domain of un 74.3 50 0.0011 39.1 13.6 86 822-907 116-201 (210)
119 cd01794 DC_UbP_C dendritic cel 74.3 4.5 9.8E-05 39.4 4.5 67 6-83 1-67 (70)
120 smart00314 RA Ras association 74.2 5.3 0.00012 40.6 5.2 50 4-55 3-54 (90)
121 cd01772 SAKS1_UBX SAKS1-like U 73.1 15 0.00033 36.6 8.0 47 88-136 5-51 (79)
122 cd01789 Alp11_N Ubiquitin-like 73.0 8.1 0.00018 39.0 6.1 75 6-84 4-79 (84)
123 PF14847 Ras_bdg_2: Ras-bindin 72.1 9.5 0.00021 40.2 6.5 48 89-136 2-50 (105)
124 cd01791 Ubl5 UBL5 ubiquitin-li 71.7 8.4 0.00018 37.9 5.7 68 6-83 2-70 (73)
125 PF00240 ubiquitin: Ubiquitin 71.7 15 0.00032 35.3 7.4 40 94-134 2-41 (69)
126 PF11543 UN_NPL4: Nuclear pore 71.7 9.8 0.00021 38.2 6.2 71 8-85 7-79 (80)
127 cd01274 AIDA-1b AIDA-1b Phosph 69.9 28 0.0006 38.2 9.7 74 332-405 40-121 (127)
128 cd01269 PLX Pollux (PLX) Phosp 69.7 14 0.0003 39.7 6.9 63 334-396 44-118 (129)
129 cd01804 midnolin_N Ubiquitin-l 69.5 26 0.00056 34.9 8.7 46 88-134 2-47 (78)
130 cd06409 PB1_MUG70 The MUG70 pr 69.4 14 0.00031 37.5 6.7 51 89-139 2-54 (86)
131 cd01775 CYR1_RA Ubiquitin doma 68.9 16 0.00035 37.7 7.0 49 88-136 3-51 (97)
132 PF10480 ICAP-1_inte_bdg: Beta 68.9 20 0.00044 41.0 8.4 74 334-407 109-195 (200)
133 cd00196 UBQ Ubiquitin-like pro 68.8 6.5 0.00014 35.2 4.1 63 13-85 6-68 (69)
134 cd01773 Faf1_like1_UBX Faf1 ik 68.7 26 0.00057 35.4 8.4 48 87-136 5-52 (82)
135 cd01208 X11 X11 Phosphotyrosin 67.9 28 0.0006 39.1 9.2 72 333-405 50-145 (156)
136 smart00213 UBQ Ubiquitin homol 67.7 9.8 0.00021 35.5 5.1 62 6-79 3-64 (64)
137 PF13881 Rad60-SLD_2: Ubiquiti 67.3 24 0.00052 37.7 8.3 69 3-79 2-75 (111)
138 cd01808 hPLIC_N Ubiquitin-like 67.2 23 0.00049 34.4 7.6 43 89-133 2-44 (71)
139 PF08824 Serine_rich: Serine r 66.6 38 0.00082 38.4 10.1 123 1252-1379 12-149 (159)
140 cd01272 FE65_N Fe65 Phosphotyr 66.4 21 0.00046 38.6 7.5 74 333-407 53-134 (138)
141 cd01805 RAD23_N Ubiquitin-like 65.3 14 0.00031 36.2 6.0 63 14-84 10-72 (77)
142 cd01800 SF3a120_C Ubiquitin-li 65.3 8.7 0.00019 37.9 4.4 62 14-85 7-68 (76)
143 cd01802 AN1_N ubiquitin-like d 64.9 33 0.00071 36.2 8.7 48 86-134 26-73 (103)
144 COG4687 Uncharacterized protei 64.9 14 0.00029 38.7 5.6 63 339-403 29-97 (122)
145 cd06407 PB1_NLP A PB1 domain i 64.0 24 0.00052 35.6 7.2 50 89-139 2-51 (82)
146 KOG4239|consensus 63.6 8.6 0.00019 46.8 4.6 49 90-138 206-255 (348)
147 cd01210 EPS8 Epidermal growth 63.5 23 0.00051 38.4 7.3 76 327-402 36-122 (127)
148 PRK07739 flgK flagellar hook-a 63.1 44 0.00095 45.2 11.8 73 1330-1402 116-189 (507)
149 KOG4239|consensus 63.0 7.1 0.00015 47.5 3.8 89 7-105 207-298 (348)
150 cd01763 Sumo Small ubiquitin-r 61.7 18 0.00038 36.9 5.9 69 6-84 12-81 (87)
151 PRK06799 flgK flagellar hook-a 61.1 48 0.001 43.9 11.3 74 1330-1403 109-183 (431)
152 cd01770 p47_UBX p47-like ubiqu 60.8 26 0.00056 35.1 6.8 47 88-134 5-51 (79)
153 cd01804 midnolin_N Ubiquitin-l 60.3 17 0.00037 36.1 5.4 69 7-86 3-72 (78)
154 PF12205 GIT1_C: G protein-cou 59.9 2.2E+02 0.0049 31.1 13.9 106 616-728 11-121 (123)
155 PF14470 bPH_3: Bacterial PH d 59.5 49 0.0011 33.7 8.9 68 332-399 21-94 (96)
156 COG1256 FlgK Flagellar hook-as 59.1 57 0.0012 44.3 11.6 77 1330-1406 108-185 (552)
157 cd01787 GRB7_RA RA (RAS-associ 58.8 18 0.00038 36.7 5.1 60 4-67 3-62 (85)
158 cd01797 NIRF_N amino-terminal 56.1 50 0.0011 33.0 7.9 45 89-134 2-48 (78)
159 cd01812 BAG1_N Ubiquitin-like 56.0 49 0.0011 31.8 7.7 44 89-134 2-45 (71)
160 TIGR02492 flgK_ends flagellar 55.9 73 0.0016 40.5 11.3 74 1330-1403 104-178 (322)
161 cd01774 Faf1_like2_UBX Faf1 ik 53.7 70 0.0015 32.6 8.5 48 87-136 4-51 (85)
162 PF13324 GCIP: Grap2 and cycli 53.5 5.4E+02 0.012 32.0 22.3 179 1218-1400 35-271 (275)
163 cd01204 IRS_PTB Insulin recept 53.4 1.4E+02 0.0031 31.0 10.3 68 334-402 23-93 (104)
164 smart00666 PB1 PB1 domain. Pho 52.8 49 0.0011 32.9 7.3 48 89-138 3-50 (81)
165 cd01771 Faf1_UBX Faf1 UBX doma 52.8 72 0.0016 32.1 8.4 47 88-136 5-51 (80)
166 cd01782 AF6_RA_repeat1 Ubiquit 52.6 35 0.00076 35.9 6.1 51 7-57 25-79 (112)
167 cd01790 Herp_N Homocysteine-re 52.2 30 0.00065 34.7 5.5 71 4-82 2-75 (79)
168 cd01783 DAGK_delta_RA Ubiquiti 52.1 40 0.00087 35.0 6.5 41 96-136 15-57 (97)
169 PRK07191 flgK flagellar hook-a 51.4 78 0.0017 42.3 11.0 74 1330-1403 104-178 (456)
170 PRK15048 methyl-accepting chem 51.1 8.2E+02 0.018 33.5 27.0 19 1923-1941 496-514 (553)
171 KOG3878|consensus 50.3 41 0.00089 41.2 7.1 71 233-316 50-122 (469)
172 smart00213 UBQ Ubiquitin homol 49.8 38 0.00083 31.5 5.8 44 89-134 2-45 (64)
173 KOG3751|consensus 49.4 69 0.0015 42.0 9.3 81 4-88 189-273 (622)
174 cd01813 UBP_N UBP ubiquitin pr 49.2 35 0.00076 33.7 5.5 69 8-83 3-71 (74)
175 cd01815 BMSC_UbP_N Ubiquitin-l 48.9 18 0.00038 35.9 3.3 57 22-85 18-74 (75)
176 PRK06665 flgK flagellar hook-a 48.8 85 0.0018 43.6 11.1 74 1330-1403 116-190 (627)
177 PF03623 Focal_AT: Focal adhes 48.1 4.4E+02 0.0095 29.5 14.4 82 825-907 33-117 (139)
178 cd01212 JIP JNK-interacting pr 46.0 98 0.0021 34.9 9.0 74 331-404 43-129 (148)
179 TIGR00601 rad23 UV excision re 46.0 32 0.0007 44.5 6.0 64 14-84 10-73 (378)
180 cd01778 RASSF1_RA Ubiquitin-li 45.2 40 0.00086 35.0 5.2 39 13-53 15-53 (96)
181 PRK07521 flgK flagellar hook-a 45.2 1.2E+02 0.0026 40.8 11.4 74 1330-1403 99-173 (483)
182 PRK05683 flgK flagellar hook-a 45.1 1.1E+02 0.0023 43.0 11.1 73 1330-1402 104-177 (676)
183 cd01816 Raf_RBD Ubiquitin doma 44.2 51 0.0011 32.5 5.4 45 90-135 2-46 (74)
184 cd01793 Fubi Fubi ubiquitin-li 44.2 85 0.0018 30.8 7.4 37 97-134 8-44 (74)
185 PRK08871 flgK flagellar hook-a 43.3 1.2E+02 0.0027 42.0 11.2 73 1330-1402 107-180 (626)
186 PF12205 GIT1_C: G protein-cou 42.9 4.1E+02 0.009 29.1 12.7 107 967-1078 13-122 (123)
187 PF05422 SIN1: Stress-activate 42.7 81 0.0018 42.5 9.1 76 318-394 433-517 (523)
188 cd01795 USP48_C USP ubiquitin- 42.6 32 0.0007 35.6 4.1 60 15-84 15-75 (107)
189 PRK06945 flgK flagellar hook-a 42.3 1.3E+02 0.0027 42.1 11.1 73 1330-1402 105-178 (651)
190 PRK12715 flgK flagellar hook-a 42.3 1.2E+02 0.0025 42.4 10.8 75 1330-1404 104-179 (649)
191 cd01769 UBL Ubiquitin-like dom 41.1 42 0.00091 31.7 4.6 60 14-83 7-66 (69)
192 cd01769 UBL Ubiquitin-like dom 40.1 1.1E+02 0.0023 28.9 7.3 41 92-133 2-42 (69)
193 PRK08471 flgK flagellar hook-a 40.0 1.5E+02 0.0033 41.0 11.4 74 1330-1403 109-183 (613)
194 cd06408 PB1_NoxR The PB1 domai 39.8 1E+02 0.0022 31.6 7.0 46 88-136 3-48 (86)
195 PF00794 PI3K_rbd: PI3-kinase 38.8 40 0.00087 35.6 4.4 69 2-74 15-85 (106)
196 PF12026 DUF3513: Domain of un 38.3 4.5E+02 0.0098 31.4 13.1 112 966-1077 94-208 (210)
197 PF08824 Serine_rich: Serine r 38.2 1.6E+02 0.0036 33.5 9.2 92 1659-1750 42-149 (159)
198 PF00789 UBX: UBX domain; Int 38.1 66 0.0014 32.1 5.7 74 3-83 6-80 (82)
199 cd06406 PB1_P67 A PB1 domain i 37.6 95 0.0021 31.3 6.4 46 89-137 4-49 (80)
200 PF03623 Focal_AT: Focal adhes 37.6 6.3E+02 0.014 28.3 13.6 116 616-764 8-126 (139)
201 cd01781 AF6_RA_repeat2 Ubiquit 37.2 92 0.002 32.7 6.5 43 95-137 13-57 (100)
202 cd01270 DYC-1 DYC-1 (DYB-1 bin 36.8 1.4E+02 0.0029 33.4 8.1 71 332-402 42-133 (140)
203 KOG0994|consensus 36.5 1.7E+03 0.036 32.9 41.6 118 511-635 1171-1295(1758)
204 cd01209 SHC SHC phosphotyrosin 35.8 1.2E+02 0.0027 34.4 7.7 74 332-406 74-156 (160)
205 cd01760 RBD Ubiquitin-like dom 35.4 52 0.0011 32.5 4.2 46 6-56 2-47 (72)
206 PRK12714 flgK flagellar hook-a 35.2 1.9E+02 0.0041 40.3 11.1 73 1330-1402 104-177 (624)
207 cd01801 Tsc13_N Ubiquitin-like 35.2 60 0.0013 32.2 4.8 56 22-84 20-75 (77)
208 PF06017 Myosin_TH1: Myosin ta 35.1 2.8E+02 0.006 32.8 11.1 66 329-396 62-136 (199)
209 cd05992 PB1 The PB1 domain is 34.8 1.1E+02 0.0024 30.2 6.7 49 89-139 2-51 (81)
210 PF12436 USP7_ICP0_bdg: ICP0-b 33.5 83 0.0018 38.5 6.6 127 4-136 71-227 (249)
211 TIGR00601 rad23 UV excision re 33.4 1.2E+02 0.0027 39.3 8.3 46 89-134 2-49 (378)
212 KOG3531|consensus 33.2 15 0.00033 49.8 0.3 161 177-346 230-392 (1036)
213 cd06404 PB1_aPKC PB1 domain is 33.1 1.1E+02 0.0024 31.0 6.0 62 5-72 2-63 (83)
214 PF00564 PB1: PB1 domain; Int 33.1 1.3E+02 0.0027 30.0 6.8 51 88-139 2-52 (84)
215 cd01791 Ubl5 UBL5 ubiquitin-li 33.1 2.1E+02 0.0046 28.2 8.1 36 89-124 3-38 (73)
216 cd01800 SF3a120_C Ubiquitin-li 33.0 1.4E+02 0.0031 29.4 7.0 39 95-134 5-43 (76)
217 KOG2378|consensus 33.0 77 0.0017 40.8 6.1 52 87-140 235-286 (573)
218 PRK08147 flgK flagellar hook-a 32.6 91 0.002 42.7 7.4 73 1330-1402 105-178 (547)
219 PF11470 TUG-UBL1: GLUT4 regul 32.0 85 0.0018 30.4 4.9 62 11-82 3-64 (65)
220 cd01271 Fe65_C Fe65 C-terminal 31.8 2.5E+02 0.0055 30.7 8.8 76 330-405 37-118 (124)
221 smart00283 MA Methyl-accepting 30.0 1E+03 0.022 28.4 24.7 16 1918-1933 123-138 (262)
222 smart00144 PI3K_rbd PI3-kinase 29.3 1.2E+02 0.0025 32.4 6.0 68 3-74 17-87 (108)
223 PLN02560 enoyl-CoA reductase 28.9 98 0.0021 39.1 6.2 65 17-84 16-81 (308)
224 PRK15048 methyl-accepting chem 28.8 1.7E+03 0.036 30.5 33.1 47 1665-1711 365-416 (553)
225 PF02824 TGS: TGS domain; Int 28.3 62 0.0013 30.6 3.4 31 90-122 1-31 (60)
226 cd06407 PB1_NLP A PB1 domain i 28.3 1.2E+02 0.0027 30.6 5.7 61 5-73 2-64 (82)
227 PF08817 YukD: WXG100 protein 28.1 1.1E+02 0.0024 30.4 5.4 74 7-83 4-78 (79)
228 PF03429 MSP1b: Major surface 28.0 5.8E+02 0.013 32.9 12.2 164 1658-1838 491-693 (726)
229 cd00900 PH-like Pleckstrin hom 27.7 2.9E+02 0.0063 26.9 8.5 60 330-390 17-86 (99)
230 cd06398 PB1_Joka2 The PB1 doma 27.1 2.2E+02 0.0049 29.5 7.3 50 89-139 2-56 (91)
231 cd06396 PB1_NBR1 The PB1 domai 27.0 2.3E+02 0.0049 28.8 7.0 47 89-139 2-50 (81)
232 PLN02560 enoyl-CoA reductase 26.0 2.3E+02 0.0051 35.8 8.8 46 89-134 2-50 (308)
233 KOG0005|consensus 25.9 1.1E+02 0.0024 28.7 4.3 38 89-126 2-39 (70)
234 cd06404 PB1_aPKC PB1 domain is 25.0 2.7E+02 0.0058 28.4 7.1 50 89-139 2-51 (83)
235 KOG0010|consensus 24.5 98 0.0021 40.7 5.1 72 5-86 15-86 (493)
236 cd01790 Herp_N Homocysteine-re 24.2 3.3E+02 0.0072 27.5 7.7 47 88-134 2-51 (79)
237 cd01786 STE50_RA Ubiquitin-lik 23.9 1.4E+02 0.0031 30.6 5.0 42 98-139 25-68 (98)
238 cd01779 Myosin_IXb_RA ubitquit 23.4 3.4E+02 0.0075 28.2 7.5 38 99-136 26-63 (105)
239 PF14847 Ras_bdg_2: Ras-bindin 23.4 1.2E+02 0.0027 32.2 4.8 48 7-56 3-50 (105)
240 cd01211 GAPCenA GAPCenA Phosph 22.4 5.2E+02 0.011 28.3 9.0 51 341-391 49-111 (125)
241 cd01767 UBX UBX (ubiquitin reg 22.3 2.3E+02 0.005 28.0 6.3 68 4-79 3-71 (77)
242 PF14836 Ubiquitin_3: Ubiquiti 21.8 2.2E+02 0.0047 29.4 5.9 74 5-84 1-78 (88)
243 cd01814 NTGP5 Ubiquitin-like N 21.1 1.1E+02 0.0024 32.7 3.9 70 3-78 4-76 (113)
244 cd01214 CG8312 CG8312 Phosphot 21.0 5.7E+02 0.012 28.5 9.3 79 332-412 41-132 (133)
245 smart00166 UBX Domain present 20.3 2.5E+02 0.0054 28.0 6.1 72 4-83 5-78 (80)
246 cd06410 PB1_UP2 Uncharacterize 20.1 2.6E+02 0.0057 29.3 6.3 46 92-139 17-62 (97)
No 1
>KOG4261|consensus
Probab=100.00 E-value=2.2e-167 Score=1515.37 Aligned_cols=986 Identities=56% Similarity=0.833 Sum_probs=927.3
Q ss_pred CcceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcc
Q psy15599 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDE 80 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~ 80 (2347)
|+.++|+|.+. +++|||+|.|++.|||+|+.|||||++...+ +++||||+.|++|.|+.||+++++|+||+++++++
T Consensus 1 m~~lsl~i~~~--~v~ktmqfepst~vyda~~~ire~~~~~~~~-a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~ 77 (1003)
T KOG4261|consen 1 MVALSLKISSA--NVVKTMQFEPSTLVYDACKVIREKFAEADVG-ASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDT 77 (1003)
T ss_pred CceeEEEEEec--ceeeeeeecCchHHHHHHHHHHHHhhhcccC-chhcceeeecCCcccceeecCCccHHHHHHhcccc
Confidence 88999999996 9999999999999999999999999999887 99999999999999999999999999999999999
Q ss_pred ccccccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhh
Q psy15599 81 LEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKER 160 (2347)
Q Consensus 81 L~~~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~ 160 (2347)
++|+++.|+++|+|+||..+++.+|.+.+|.+++..||.++||.++++|+|...+.....+.++ |+|.+++. ..++
T Consensus 78 ~ey~~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~~~~~~~~t--gtl~~~~~--~m~~ 153 (1003)
T KOG4261|consen 78 LEYKRKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDIEEQNEEGT--GTLNLKRK--LMRK 153 (1003)
T ss_pred cchhhhcccceeeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHHHHHHhcCCCC--ceEEeehh--HHHh
Confidence 9999999999999999999999999999999999999999999999999998876544444433 66655433 4455
Q ss_pred hHHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHH
Q psy15599 161 DLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDL 240 (2347)
Q Consensus 161 ~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ 240 (2347)
+.++++||++||++++.+|+|..+++++||++++|+++|||||||+|.|++++||+++||||.|+|++|++|.+|++.+.
T Consensus 154 ~~kme~Lkkkl~td~el~wld~~rtlreqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~k 233 (1003)
T KOG4261|consen 154 ERKMEKLRKKLHTDDELNWLDHSRTLREQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEK 233 (1003)
T ss_pred hhhhHHHHhhcccchhhhhHHHhHHHHhcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHH
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEE
Q psy15599 241 ACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFF 320 (2347)
Q Consensus 241 ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F 320 (2347)
+++|+++|.|++||++++.+|+ +|+++++|+|++|.|+++ +++|+..|+++.++++.+||.+|.++||++++||++||
T Consensus 234 A~e~a~~qshiq~g~~~~~k~k-~~ld~kd~lpk~y~k~k~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff 311 (1003)
T KOG4261|consen 234 ACEFAGFQSHIQFGPHNEDKHK-GFLDLKDFLPKEYVKQKG-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFF 311 (1003)
T ss_pred HHHHhccccccccCCchhhccc-cchhccccChHHHhcccc-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEE
Confidence 9999999999999999999999 999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCcCcEEEEechHHHHHHHHHH
Q psy15599 321 LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQIQQLIA 400 (2347)
Q Consensus 321 ~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~q~k~I~~LI~ 400 (2347)
.|+.+++|+|+.+|++|||+++.++++|.++|++|..||+..|++|..+++.|+++||+|.+.||+++|++++.|.+||.
T Consensus 312 ~VKek~~gknklVprlLgv~K~svmr~de~tk~il~ewpl~~V~rw~~s~~~ftldfgdyq~~yysvqtT~~e~i~Qli~ 391 (1003)
T KOG4261|consen 312 LVKEKMKGKNKLVPRLLGVTKESVMRVDEKTKEILQEWPLTTVRRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIA 391 (1003)
T ss_pred EehhhccCcccccchhhhhhHHhhhhcchhhhhHhhhcchhHHHHhccCcceeccccccccccccceeeccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCccccccccccccchhhcccccCccccccccccccccccCCCCCCCCcccccCCccc
Q psy15599 401 GYIDIILKKKMSKDHFGIEGDEGSTMVEDSVSPLKATIFQHESNRVGKVNTESVAKPAVMRAGNDGARPYGVGHVGSAQY 480 (2347)
Q Consensus 401 gYi~l~lk~rr~kd~~~~~~ee~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~q~ 480 (2347)
|||++++|++++||+||+++||+++|++++|.|.|+++++|++|++|+.+.|+|++||+||+ ++|+++|++| ++||
T Consensus 392 gyidiilkkk~skdh~G~egde~stm~e~~v~p~k~t~~~~q~~~~~~~~~~~va~~~v~r~-~~g~~~~~~~---~~q~ 467 (1003)
T KOG4261|consen 392 GYIDIILKKKQTKDHFGIEGDEGSTMLEDSVAPKKATLLQHQINRGGKAEHGSVALPGVMRS-PSGPEGYGVN---GAQY 467 (1003)
T ss_pred HHHHHHHhhhhhhhhcccccchhhhhhhhhcccchhhHHHHHhcccccccccceeccccccC-CCCCcccccC---Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999995 9999999866 8999
Q ss_pred ccccccccccCCCCcccccchhhhhchhHHHHhhhhHhhHHHHHHHHHhhccccCCCCCCCCccchhHHHhhhhhhhhhH
Q psy15599 481 TTVSGQINIAHSPTTTQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNV 560 (2347)
Q Consensus 481 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~al~~~i~~~~~~v~~a~~el~~~~~~~~~~~d~as~~w~~~~~~~~k~~v 560 (2347)
+.++||+|+||||| |++|||||+|||+.+++++++|..||+....+|++|+|.++.+|++|++|++||+|
T Consensus 468 g~~~gqv~~~~~p~----------~~~pq~al~gti~~t~~av~~A~~~l~~~~~~~~~~~d~~~~~w~~~~~~~~k~~v 537 (1003)
T KOG4261|consen 468 GAVSGQMHRGHMPP----------LTSPQRALIGTINASMRAVQDAQIELEAEDDIPPLGQDYASNRWRENKQDESKHEV 537 (1003)
T ss_pred CceeeeccCCCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHhhhhhHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCC-CccchhhhhhhhhcchhhHhhhhHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHhc
Q psy15599 561 SSQIAAMNAATAQVVTMTSGEVT-DYSGVESAITSISHTLPEMSKGVRMLAALTPS--GDELLDAARKLCFAFTDLLKAA 637 (2347)
Q Consensus 561 ~~~~~a~~a~~a~~~~~~a~~~~-d~~~v~~~i~~i~s~~~~~~~~~k~la~l~~~--~~~L~~aar~La~a~s~ll~~~ 637 (2347)
++|+++|+++||+++ |+++|. || |+++|++|++|+|+|++++|.|++||++ |++|++++|.||.||++|++..
T Consensus 538 ~~~~~a~~a~ta~vv--ta~~~~~D~--v~~ai~~i~~nl~~~s~~v~~l~a~me~~~g~~ll~a~~~l~~A~s~~l~~~ 613 (1003)
T KOG4261|consen 538 HSQVAAMTAATAQVV--TAGDPADDY--VGCAITTISSNLPEVSRGVRLLAALMEDEEGGDLLDAAKKLCGAFSDLLKAV 613 (1003)
T ss_pred HHHHHHHHhhhhhee--eccCCCCCc--eeeeEEeeccCchHhhhhHHHHHHHHhhccCchHHHHHHHHhhhHHHHHhhc
Confidence 999999999999999 555555 88 9999999999999999999999999977 9999999999999999999999
Q ss_pred CCCCChhHhHHHHHHhHHHHHHHHHHHhhccc---cchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-hhhhHHHHH
Q psy15599 638 QPHSNQPRQNLLNAATRVGEASHHVLTEIGES---QTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVIT 713 (2347)
Q Consensus 638 ~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~---~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~-~~~q~~li~ 713 (2347)
+|++.++|+.++.+|+.+|+++++++. +++. ....|+|.|+..||+|++++++||+++|+++..|+ ++.|++||+
T Consensus 614 ~p~s~~~~~~~~~~a~~vg~~s~~~l~-i~e~~~~g~~~f~d~l~asakavA~~~aalvl~aK~iaavcDd~~~q~rVIa 692 (1003)
T KOG4261|consen 614 QPESEEPRQEVLRAAGHVGEASGHLLN-IGEAMASGSAGFPDGLMASAKAVANATAALVLKAKNIAAVCDDCQLQNRVIA 692 (1003)
T ss_pred CCCCCCCchhHhHhhcccccchhhhhh-hhcccCCcccCcchhhhhchhhhhhhhHHHhhhhhhHHHhcccHHHHHHHHH
Confidence 999999999999999999999999998 6666 44569999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy15599 714 SATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNH 793 (2347)
Q Consensus 714 aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~ 793 (2347)
+|++||++|+|||+|+|+|+|||.+|.||+||+.+++.|..+++.|+.+|+.+..++....++.+++++|+.+|.+|++|
T Consensus 693 aatqcAlaTsqLVacakvvspTi~~~~cQeQl~~aar~v~~SV~~~~~~sq~a~~d~~ll~dvlaaa~dVs~aLtelleH 772 (1003)
T KOG4261|consen 693 AATQCALATSQLVACAKVVSPTISNPACQEQLTEAARLVGRSVNNLVVASQAATGDFGLLGDVLAAARDVSQALTELLEH 772 (1003)
T ss_pred HHHHHHhhhccceeeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcch--HHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Q psy15599 794 IKVTTTEPAQDV--ETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLA 871 (2347)
Q Consensus 794 ~k~~~~~~~~~~--~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La 871 (2347)
++......+++. +.+.++++..+++++-++|++.+|||+|+.+++++..||+.++++|+...|-+.+.+|+.+|+.|+
T Consensus 773 ak~~a~~~tp~~~~eq~~~~~~~rttri~~s~gd~~emvR~Ar~l~qttqlLve~~qgeA~~~~dle~~~~Llsaak~la 852 (1003)
T KOG4261|consen 773 AKYSAAVATPRGRYEQATDEILYRTTRIFVSMGDAGEMVRQARLLAQTTQLLVEASQGEAEQEKDLENSCKLLSAAKRLA 852 (1003)
T ss_pred HHHhhccCCCCCCcccCCceeEEEEeeeeeecCCHHHHHHHhHHhhhcHHHHHHHHhhhhhcccchhhHHHHHhHHhhhh
Confidence 987776666555 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh----cchHHHHHhhhhccccccccCCcchHHHHHHHHHHHHHhh
Q psy15599 872 EATARMVEAARQCASHPQDIMKQEALVTTVEELRQA----ATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYE 947 (2347)
Q Consensus 872 ~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~A----t~~~i~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~a~~ 947 (2347)
++|++||+++|.++.||++.+++++|++||+.|+.+ ++++++++++++|. -|.
T Consensus 853 dstaqmvlaak~ass~p~~~~~q~rlrkaAe~lr~~Tn~Aaq~aikq~i~qrLe---------------fAa-------- 909 (1003)
T KOG4261|consen 853 DSTAQMVLAAKGASSNPSAEDQQQRLRKAAEGLRAATNAAAQNAIKQKIVQRLE---------------FAA-------- 909 (1003)
T ss_pred hhHHHHHHHHhhhcCCchhHHHHHHHHHhhHHHHHHhHHHHHhHHHHHHHHHHH---------------HHH--------
Confidence 999999999999999999999999999999999877 44455555444441 111
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC---CCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Q psy15599 948 QIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVK---NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQT 1024 (2347)
Q Consensus 948 ~l~~~~~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~---~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~ 1024 (2347)
++...+|.+...+++..++.+. .++.|.++|+.+++.|++|++..++.+.+++|+++|.
T Consensus 910 ------------------Kqaa~~aTqtISAaq~Avqt~q~~~a~e~lvQ~Cv~va~~Ip~Lvq~~~g~~aq~d~~~aql 971 (1003)
T KOG4261|consen 910 ------------------KQAAAAATQTISAAQNAVQTAQLHAAMETLVQSCVAVADTIPRLVQGVRGSQAQSDDRSAQL 971 (1003)
T ss_pred ------------------hHHHHHHHHHHHhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhCCcccccCCCChhhhH
Confidence 2223344445555566666554 4457999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhcCCCCchh
Q psy15599 1025 KMLSSLKSVSTSSSKFLSTARSAALDPSASN 1055 (2347)
Q Consensus 1025 ~li~~~~~i~~~s~kLl~~aKa~~~~p~d~~ 1055 (2347)
.+|..+++|+.|+++++.++|++.|+.+|+.
T Consensus 972 ~li~~~~~fl~palk~~sS~ral~Ptvsd~~ 1002 (1003)
T KOG4261|consen 972 ALISESQTFLQPALKMVSSARALVPTVSDQA 1002 (1003)
T ss_pred HHHHhhhHhhhhhhhhhccccccCCcccCCC
Confidence 9999999999999999999999999999864
No 2
>KOG0980|consensus
Probab=100.00 E-value=6e-70 Score=677.69 Aligned_cols=378 Identities=27% Similarity=0.349 Sum_probs=339.2
Q ss_pred hHHHHHHHHHHHHHHhcCCccccCCCCCHHHHHHhhcchhHH-HHHH------HHcCCCCChhHHHHHHhhHHHHHHHHH
Q psy15599 1924 RALESTIEAIAQEIRALNSVEQVKSTASPEELVRCTKPITQA-TAKA------VAAGNSCKQEDVIVAANMGRKAISDML 1996 (2347)
Q Consensus 1924 ~ale~~~~~I~~~~~~lds~~~~~~~~tpe~lls~~~~~t~a-t~~a------va~g~~~~q~dvI~~an~~~~aI~dll 1996 (2347)
+.+.+++..|...++.+|+|+++++..+|++|++.++..+.+ +.+. +++ +.+.+++|++++.|++.|++++
T Consensus 592 ~~~~~~~q~lq~al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~--~~d~s~~i~~v~~fs~~~~~~~ 669 (980)
T KOG0980|consen 592 GSLASGIQALQNALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNNYLAD--GDDASDLIHCVTLFSHLISTTI 669 (980)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCC--chhhhhHhhHHHHHHHHHHHHH
Confidence 467789999999999999999998899999999999874444 4333 445 3458899999999999999999
Q ss_pred HhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhccCcchHHHHHHHHHHHHHHHHhcC-C
Q psy15599 1997 AVCKGCSNAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQALPPISRRIAQSLTELVSIAEQLKG-S 2075 (2347)
Q Consensus 1997 ~~~Kg~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~s~~v~~~~~~l~~~~~~l~~-~ 2075 (2347)
.|+|++++++ ++|..++++..||.|+..+..++.++...-.. ..+ ....+...|+.+.++.+.|.+ .
T Consensus 670 ~na~a~~~ta-~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al-~~~----------d~~~l~~~lq~~~~~~eel~~~~ 737 (980)
T KOG0980|consen 670 NNAKATAYTA-SPEGSDRVNDLCKKCGREALAFLVSLSSENAL-ERG----------DEMLLRQYLQTLNQLGEELLPKE 737 (980)
T ss_pred hcchhheecc-CCchhHHHHHHHHHHHHHHHHHHHHHhhhhHH-Hhh----------HHHHHHHHHHHHHHHhHHhcccc
Confidence 9999999776 55689999999999999988888777532100 000 112677778999999998854 3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCccCcccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 2076 NWMDPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDETLNFDEMILEAAKSIAAATSALVKAASASQRELIDA 2155 (2347)
Q Consensus 2076 ~~~~~~~~~~~~e~El~~aa~aIe~a~~~l~~~~~~~~~~~~~~~l~v~e~Il~~a~~i~~a~~~Lv~aa~~~q~eiv~~ 2155 (2347)
..++.+-+|.++|+||..+.++|+.|+.+|+++..++|.+.++.+|+||+.||++|++||.||..||++|+.+|+|||++
T Consensus 738 ~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm~aI~~Lv~as~~lQ~EIVas 817 (980)
T KOG0980|consen 738 LDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALMEAIMALVKASRELQTEIVAS 817 (980)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCchHHHHhhhhhhhhhHHHHHHhhcCC
Q psy15599 2156 GRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKA 2235 (2347)
Q Consensus 2156 gr~~~~~~~~~~~~~fy~~~~~w~egLisaak~Va~a~~~l~~~a~~~~~g~~~~E~li~aa~~vaastaqLv~asrvka 2235 (2347)
|||+++| + +||+||+|||||||||||+|||||++|||+||+||+|+|++|+||||++||||||||||+|||||+
T Consensus 818 grgsas~-----~-eFY~kNsrWTEGLISAaKAVa~aatvLVeaAdkvV~~~gkfEeLIVas~EIAAsTaQLVaASrVKA 891 (980)
T KOG0980|consen 818 GRGSASP-----N-EFYKKNSRWTEGLISAAKAVAWAATVLVEAADKVVTGTGKFEELIVASQEIAASTAQLVAASRVKA 891 (980)
T ss_pred cCCCCCH-----H-HHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhHhcCCCCcHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence 9999996 2 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 2236 DPESDATHRLQSAGNAVKRATDNLVRAAQQAIQ-QDEERSLVLN-RKMVGGIAQEINARSEVLRIERQLEEARGRLTAIR 2313 (2347)
Q Consensus 2236 ~~~s~~~~~L~~a~~~V~~a~~~lv~~~~~~~~-~~~~~~~~~~-~~~~~~k~~eme~qv~il~le~~L~~~r~~L~~~r 2313 (2347)
+++|+.+.+|+.|||+|++||+.||++++.+.. .++..++||| +++|+.|++|||+||+||+||++|+.+|+||++||
T Consensus 892 ~k~S~~ld~L~~ask~Vtqat~~lVa~vks~~sq~e~~~~~DFS~ls~h~~K~~EME~QVkvLeLEq~L~~eR~rL~elR 971 (980)
T KOG0980|consen 892 DKDSKKLDALEVASKAVTQATAQLVASVKSGQSQLEQQQSLDFSSLSLHQLKTQEMEQQVKVLELEQSLQAERARLGELR 971 (980)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864 4667899999 78999999999999999999999999999999999
Q ss_pred HhhhcccC
Q psy15599 2314 QAKYKLKG 2321 (2347)
Q Consensus 2314 k~~Y~~~~ 2321 (2347)
|+||+.++
T Consensus 972 K~hY~~A~ 979 (980)
T KOG0980|consen 972 KQHYHNAD 979 (980)
T ss_pred HHHHhhcC
Confidence 99999875
No 3
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=100.00 E-value=2e-53 Score=472.45 Aligned_cols=196 Identities=47% Similarity=0.677 Sum_probs=186.8
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCCCcccccchhHhHHHHHHHHHHHHHHHH
Q psy15599 2118 DETLNFDEMILEAAKSIAAATSALVKAASASQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFV 2197 (2347)
Q Consensus 2118 ~~~l~v~e~Il~~a~~i~~a~~~Lv~aa~~~q~eiv~~gr~~~~~~~~~~~~~fy~~~~~w~egLisaak~Va~a~~~l~ 2197 (2347)
+.+|+|||.||++|++||+||..||++|+.+|+|||++|||+.++ .+||+||+||+||||||||+|+++++.||
T Consensus 1 ~~~l~v~e~IL~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~~~~~------~~fY~kn~~w~EgLisAAkaV~~a~~~Lv 74 (200)
T smart00307 1 GVELEVDESILEAAKAITKAIAALVKAATNAQREIVAQGRGGASP------GEFYKKNSRWTEGLISAAKAVAAATNVLV 74 (200)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc------ccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999998774 27999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchHHHHhhhhhhhhhHHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhc
Q psy15599 2198 EAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRATDNLVRAAQQAIQQ--DEERSL 2275 (2347)
Q Consensus 2198 ~~a~~~~~g~~~~E~li~aa~~vaastaqLv~asrvka~~~s~~~~~L~~a~~~V~~a~~~lv~~~~~~~~~--~~~~~~ 2275 (2347)
++||++++|.+++|+||+++|+||++|+|||+|||||++++|+++++|+.|||+|++||++||+++|.+... ++++.+
T Consensus 75 ~aA~~~~~g~~~~E~LI~aAk~VAasTaQLVaAsrvka~~~S~~~~~L~~Ask~V~~At~~LVaaak~~~~~~~e~~~~~ 154 (200)
T smart00307 75 EAADGVVTGKGSEEELIVAAKEVAASTAQLVAASRVKADKDSQAQDRLQAASKAVTNATANLVAAVKSGMIFDEEQEEEE 154 (200)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998653 444588
Q ss_pred ccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15599 2276 VLN-RKMVGGIAQEINARSEVLRIERQLEEARGRLTAIRQAKYKL 2319 (2347)
Q Consensus 2276 ~~~-~~~~~~k~~eme~qv~il~le~~L~~~r~~L~~~rk~~Y~~ 2319 (2347)
||+ +++|++|++|||+||+||+||++|++||+||++|||++|+.
T Consensus 155 d~s~l~~~~~k~~emE~Qv~IL~lE~~L~~ar~~L~~lRk~~Y~~ 199 (200)
T smart00307 155 DFSKLSLHEGKTQEMEQQVEILKLENELEAARKKLAEIRKQHYEL 199 (200)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998 78999999999999999999999999999999999999985
No 4
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=100.00 E-value=2.5e-47 Score=405.79 Aligned_cols=149 Identities=48% Similarity=0.716 Sum_probs=128.8
Q ss_pred CcccccchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCchHHHHhhhhhhhhhHHHHHHhhcCCCCCChhHHHHHHHHH
Q psy15599 2171 WSEDDGQWSEGLISAARLVAAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGN 2250 (2347)
Q Consensus 2171 fy~~~~~w~egLisaak~Va~a~~~l~~~a~~~~~g~~~~E~li~aa~~vaastaqLv~asrvka~~~s~~~~~L~~a~~ 2250 (2347)
||+||+|||||||||||+||++|+.||++||++|+|++++|+|||++++||+||||||+|||||++++|+++.+|+.||+
T Consensus 1 fY~~n~~WteGLISAAKaVa~at~~LveaA~~vv~g~~~~E~LIvaa~eVAasTAQLv~AsrVKa~~~S~~~~~L~~As~ 80 (152)
T PF01608_consen 1 FYKKNSRWTEGLISAAKAVAAATNMLVEAADGVVQGTGSEEELIVAAKEVAASTAQLVAASRVKADPNSKTQDRLEQASK 80 (152)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHCTTS-TTSCCHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15599 2251 AVKRATDNLVRAAQQAIQQD-EERSLVLN-RKMVGGIAQEINARSEVLRIERQLEEARGRLTAIRQAKYKL 2319 (2347)
Q Consensus 2251 ~V~~a~~~lv~~~~~~~~~~-~~~~~~~~-~~~~~~k~~eme~qv~il~le~~L~~~r~~L~~~rk~~Y~~ 2319 (2347)
+|+.||++||++|+.+.... +.+.+||+ +++|++|++|||+||+||+||++|++||+||++|||++|+.
T Consensus 81 ~V~~At~~LV~av~~~~~~~~~~~~~d~s~ls~~~~k~~eMe~Qv~iL~lE~eLe~ar~kL~~lRk~~Y~~ 151 (152)
T PF01608_consen 81 AVKKATENLVAAVKAAIEQEEEQEEVDFSKLSLHQAKRQEMEAQVRILKLEKELEKARKKLAELRKAHYHN 151 (152)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999986543 34788999 58999999999999999999999999999999999999974
No 5
>KOG3727|consensus
Probab=100.00 E-value=1.5e-45 Score=441.34 Aligned_cols=399 Identities=28% Similarity=0.456 Sum_probs=323.7
Q ss_pred cceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhhhccCCcc
Q psy15599 2 ATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYYILRNGDE 80 (2347)
Q Consensus 2 ~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y~l~~~~~ 80 (2347)
++|.|+|+|+|+++.|||++.|+.|||++|+.+++ .... ++|+||+||| |.+.+||.. ++||++++++++..
T Consensus 7 ~~w~l~i~vtdl~~~~t~~v~g~~~igg~ml~lv~-~~~~--kdwSdhalww----~~k~~wl~~t~~Tldq~gi~a~~~ 79 (664)
T KOG3727|consen 7 GTWNLRILVTDLNIEKTLRVLGDQHIGGVMLELVD-PDVP--KDWSDHALWW----PAKRRWLQRTRSTLDQNGIQADSQ 79 (664)
T ss_pred CeeeeEEEEeeccceeeEEeeccceeeeeEEEecC-CCCc--cccccccccc----cchhhheeccccchhhcccchhhh
Confidence 68999999999999999999999999999999999 3333 7999999999 999999987 88999999999999
Q ss_pred ccccccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCccccc---------CCC------
Q psy15599 81 LEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVEN---------KPN------ 145 (2347)
Q Consensus 81 L~~~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~---------~~~------ 145 (2347)
|+|+|+|+.+++.+||-++....+|++...+.++..+|+.++|+++++++|......+.... .+.
T Consensus 80 l~ftp~hk~~r~qlp~mr~~~~~vdfsv~~f~a~~~lcK~~~ir~~eels~~k~l~~~~~~k~~~~~~~~~~~~~~~~~~ 159 (664)
T KOG3727|consen 80 LHFTPMHKELRVQLPDMRYLDARVDFSVKTFKAVVKLCKDLDIRYPEELSLCKPLEPEHLKRNFSDADQMNGPLAERPPI 159 (664)
T ss_pred ccccccccchhhhCcceeeecceeehhhhhHHHHHHHHhhhcccCHHHHhhccCCCChhhhhhhhhchhhccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999987654322100 000
Q ss_pred ----Ccc----cchh---------chh------hh-h------hhhHH----------HHHHHhhhccC--------ccc
Q psy15599 146 ----FGT----LTLK---------RKK------EE-K------ERDLK----------MEQLRKKLKTD--------DEV 177 (2347)
Q Consensus 146 ----~g~----L~L~---------~~~------~~-~------~~~~k----------~~~Lk~~l~~~--------~~~ 177 (2347)
.|. .++. +.. .. . +.+.. ....+....++ .+.
T Consensus 160 ~~~s~~~~~~~~s~~~~~~~p~~~~~~~~p~~~~~s~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~f~p~~l~~kar~n~ 239 (664)
T KOG3727|consen 160 ATQSNGDMRSRGSLDAAPESPTLPRHGTSPRGPSSSPGGSSSLEGDQQENLAISPPRPSPDVRAPVFRPQSLVEKARINV 239 (664)
T ss_pred cccCCchhcccccccccccCCCchhhccCCCCCCCCCccccCCccccccchhcCCCcCCccccCCCCCcccccchhcccc
Confidence 000 0000 000 00 0 00000 00011111111 467
Q ss_pred cccccchhhhhcCCCCCceEEEEEEee-cCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCC-
Q psy15599 178 NWIDFSKTLREQGIDENEPVLLRRKFF-FSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGD- 255 (2347)
Q Consensus 178 ~WLd~~ktL~eQgv~e~~~L~LRrKff-~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD- 255 (2347)
.|+|++..+++||+.+...+.+|++|| |+|.+++ .|.++++++|+|+||+++..++.|+++++..|||+|.|+.+--
T Consensus 240 gwldSs~s~meq~~~e~d~~~lrfk~~~ffdlnpk-yd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~~~~ 318 (664)
T KOG3727|consen 240 GWLDSSRSLMEQGIREYDTLLLRFKYFTFFDLNPK-YDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNHQRD 318 (664)
T ss_pred CCchhhhHHHHccchHHHHHHHHHhhhhhhhcccc-cceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999 8888885 8999999999999999999999999999999999999998731
Q ss_pred CC-CC-------------------------C----C-----------CCC------------------------------
Q psy15599 256 YN-PS-------------------------K----H-----------KPP------------------------------ 264 (2347)
Q Consensus 256 ~~-~~-------------------------k----~-----------~~~------------------------------ 264 (2347)
.. +. . . +|.
T Consensus 319 ~~~~~~d~~dd~d~~l~el~~tl~~~~~~~~~D~t~ipel~dy~~~~kpk~~~~Kg~kr~f~t~~dl~~~~~~s~~~s~~ 398 (664)
T KOG3727|consen 319 STPPGENNEDDVDSALDELEITLEGPALGRRGDITRIPELADYLKYLKPKKLTLKGYKRYFFTFRDLHLSLYKSSEDSRG 398 (664)
T ss_pred cCCCCCCCcchhHHHHHHHHHhhhccCcCCccccccCCcccchhhhhchhhhhhhhhhhHHHHHHHHHHHHHhhHhhhcC
Confidence 00 00 0 0 000
Q ss_pred -------------------------------------------------------------------------------c
Q psy15599 265 -------------------------------------------------------------------------------F 265 (2347)
Q Consensus 265 -------------------------------------------------------------------------------~ 265 (2347)
|
T Consensus 399 ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLASKGktMADSSY~sEV~sIlsf 478 (664)
T KOG3727|consen 399 APAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLASKGKTMADSSYQSEVQSILSF 478 (664)
T ss_pred CCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhhcCCccccccccHHHHHHHHH
Confidence 0
Q ss_pred ccc----------------ccccchhhh--------hhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEE
Q psy15599 266 LDL----------------KEFLPQSYV--------KVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFL 321 (2347)
Q Consensus 266 l~l----------------~~~lP~~~l--------k~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~ 321 (2347)
+.+ .++-|..|+ ++|.+..+|+++|++.+.|+..|||++||+.|++||.||+++|-
T Consensus 479 L~MQ~~n~g~~q~~~~~~~~d~np~~~vSPr~~rk~ksKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfi 558 (664)
T KOG3727|consen 479 LKMQRPNSGSRQAAPVKLPRDVNPECYVSPRYVRKLKSKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFI 558 (664)
T ss_pred HHhcCCCCCCCcCCcccCcCCCCchhhcCHHHHHHHhhHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEE
Confidence 000 122233332 24568899999999999999999999999999999999999999
Q ss_pred EEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC--ceEEEEeCCCcCcEEEEechHHHHHHHHH
Q psy15599 322 VKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS--NVFTLDFGDYSDNYYSVQTTEAEQIQQLI 399 (2347)
Q Consensus 322 Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~--~~f~I~~~d~~~~~f~~~T~q~k~I~~LI 399 (2347)
|+++ |. .++.+|||..++++++|..+++++++|+|++|+.|+++| +.++|+|.++.+..|+|.+.+|+.+|++|
T Consensus 559 vRFk--Gs--rKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNWeir~v~IeF~dev~iaFsc~SADCKVVHEfI 634 (664)
T KOG3727|consen 559 VRFK--GS--RKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNWEIRQVMIEFEDEVNIAFSCLSADCKVVHEFI 634 (664)
T ss_pred EEec--Cc--chHHHHhhhhhheeeeecccCCceeeeeecchhhhcccceeeEEEEEecccceEEEEeecccchhhhhhc
Confidence 9984 54 357899999999999999999999999999999999999 78999999998889999999999999999
Q ss_pred HHHHHHHHhhhcccCC
Q psy15599 400 AGYIDIILKKKMSKDH 415 (2347)
Q Consensus 400 ~gYi~l~lk~rr~kd~ 415 (2347)
+|||++.+ |+||+
T Consensus 635 GGYIFLSt---RsKd~ 647 (664)
T KOG3727|consen 635 GGYIFLST---RSKDQ 647 (664)
T ss_pred cceEEEEe---cchhc
Confidence 99999998 66665
No 6
>KOG4261|consensus
Probab=100.00 E-value=1.4e-37 Score=381.69 Aligned_cols=818 Identities=11% Similarity=-0.014 Sum_probs=600.2
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
..+++|++.+.+..|+|||+|..+++++|+++++.+++...+.+.+|++|..+.++-...|+.+..+|.+|+.+.+.++.
T Consensus 43 a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 43 ASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred chhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcccceeeecccccceeeecccccHHHHHHHHHhccCccc
Confidence 56889999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccceeEEEEeCCCcEEE--EEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhh
Q psy15599 83 YRRKMRTLKVRMLDGTLKT--LLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKER 160 (2347)
Q Consensus 83 ~~~~~r~lkV~L~DG~~~~--v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~ 160 (2347)
|....++-.+.++++...+ +.++.. +. .+++ ++-.|+++....++
T Consensus 123 yeeyslvre~~~~~~~~~tgtl~~~~~-----------------------~m----~~~~------kme~Lkkkl~td~e 169 (1003)
T KOG4261|consen 123 YEEYSLVREDIEEQNEEGTGTLNLKRK-----------------------LM----RKER------KMEKLRKKLHTDDE 169 (1003)
T ss_pred hhhhhhhHHHHHHhcCCCCceEEeehh-----------------------HH----Hhhh------hhHHHHhhcccchh
Confidence 9888777777777776443 222211 00 0010 11224555555677
Q ss_pred hHHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHH
Q psy15599 161 DLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDL 240 (2347)
Q Consensus 161 ~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ 240 (2347)
..++++.|.+.+..+..+|++..++...++..+......++.+|++..+.+..++...++.|.++++++..+.++...+-
T Consensus 170 l~wld~~rtlreqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~~ 249 (1003)
T KOG4261|consen 170 LNWLDHSRTLREQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGPH 249 (1003)
T ss_pred hhhHHHhHHHHhcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCCc
Confidence 78999999999999999999999999888888888888888888888888888999999999999999999999998888
Q ss_pred HHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEE
Q psy15599 241 ACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFF 320 (2347)
Q Consensus 241 ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F 320 (2347)
...+.. .++..++-+..+.+++++ +.+-|.|+.+++...-.+.+..+|+..++|+...++..|++..+....||+.+|
T Consensus 250 ~~~k~k-~~ld~kd~lpk~y~k~k~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprl 327 (1003)
T KOG4261|consen 250 NEDKHK-GFLDLKDFLPKEYVKQKG-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRL 327 (1003)
T ss_pred hhhccc-cchhccccChHHHhcccc-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchh
Confidence 888888 888888888888899998 999999999988777778899999999999999999999999999999999999
Q ss_pred EEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCcCcEEEEechHHHHHHHHHH
Q psy15599 321 LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQIQQLIA 400 (2347)
Q Consensus 321 ~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~q~k~I~~LI~ 400 (2347)
.+..|+++.+...+...+|...-+..++..++.+..+|+..-...|++.+..|+..++.++-.++.+.+...+.+.+.+-
T Consensus 328 Lgv~K~svmr~de~tk~il~ewpl~~V~rw~~s~~~ftldfgdyq~~yysvqtT~~e~i~Qli~gyidiilkkk~skdh~ 407 (1003)
T KOG4261|consen 328 LGVTKESVMRVDEKTKEILQEWPLTTVRRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKKQTKDHF 407 (1003)
T ss_pred hhhhHHhhhhcchhhhhHhhhcchhHHHHhccCcceeccccccccccccceeeccchHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99988777776667778888888999999999999999999999999999999999987776788888999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCccccccccccccchhhcccccCccccccccccccccccCCCCCCCCcccccCCccc
Q psy15599 401 GYIDIILKKKMSKDHFGIEGDEGSTMVEDSVSPLKATIFQHESNRVGKVNTESVAKPAVMRAGNDGARPYGVGHVGSAQY 480 (2347)
Q Consensus 401 gYi~l~lk~rr~kd~~~~~~ee~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~q~ 480 (2347)
||+.......-++++++...+..+. ..+.+.|.+.++|++..+..+ ...|++.+|+ ++..|+..++||+|..++
T Consensus 408 G~egde~stm~e~~v~p~k~t~~~~-q~~~~~~~~~~~va~~~v~r~-~~g~~~~~~~---~~q~g~~~gqv~~~~~p~- 481 (1003)
T KOG4261|consen 408 GIEGDEGSTMLEDSVAPKKATLLQH-QINRGGKAEHGSVALPGVMRS-PSGPEGYGVN---GAQYGAVSGQMHRGHMPP- 481 (1003)
T ss_pred ccccchhhhhhhhhcccchhhHHHH-HhcccccccccceeccccccC-CCCCcccccC---CcccCceeeeccCCCCCC-
Confidence 9999998888899999999988888 888999999999999999887 8888999988 467888999998887776
Q ss_pred ccccccccccCCCCcccccchhhhhchhHHHHhhhhHhhHHHHHHHHHhhcc----------------------------
Q psy15599 481 TTVSGQINIAHSPTTTQQSQVTNILTGSQKALLSTITEGHEVITTVEKELIS---------------------------- 532 (2347)
Q Consensus 481 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~al~~~i~~~~~~v~~a~~el~~---------------------------- 532 (2347)
|+|| ++..+.+++++|+..+++.++++.+-+.
T Consensus 482 ----------~~~p----------q~al~gti~~t~~av~~A~~~l~~~~~~~~~~~d~~~~~w~~~~~~~~k~~v~~~~ 541 (1003)
T KOG4261|consen 482 ----------LTSP----------QRALIGTINASMRAVQDAQIELEAEDDIPPLGQDYASNRWRENKQDESKHEVHSQV 541 (1003)
T ss_pred ----------CCCH----------HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHhhhhhHHHHHHHH
Confidence 8898 8889999999999999999999887431
Q ss_pred ------ccCCCCCC---CCc----------cchhHHHh--------hhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCC-C
Q psy15599 533 ------KAIIPDLG---NDA----------ASLKWKET--------TVDANKHNVSSQIAAMNAATAQVVTMTSGEVT-D 584 (2347)
Q Consensus 533 ------~~~~~~~~---~d~----------as~~w~~~--------~~~~~k~~v~~~~~a~~a~~a~~~~~~a~~~~-d 584 (2347)
..++-+.| +|. ..+.--.+ -+|. .-.+..-..+.+-+|+-+++.-.-.+. .
T Consensus 542 ~a~~a~ta~vvta~~~~~D~v~~ai~~i~~nl~~~s~~v~~l~a~me~~~-g~~ll~a~~~l~~A~s~~l~~~~p~s~~~ 620 (1003)
T KOG4261|consen 542 AAMTAATAQVVTAGDPADDYVGCAITTISSNLPEVSRGVRLLAALMEDEE-GGDLLDAAKKLCGAFSDLLKAVQPESEEP 620 (1003)
T ss_pred HHHHhhhhheeeccCCCCCceeeeEEeeccCchHhhhhHHHHHHHHhhcc-CchHHHHHHHHhhhHHHHHhhcCCCCCCC
Confidence 01111110 010 00110000 0011 223333444445555555543211110 0
Q ss_pred ccchhhhhh--------------------------------hhhcchhhHhhhhHHHHhcCCC---hHHHHHHHHHHHHH
Q psy15599 585 YSGVESAIT--------------------------------SISHTLPEMSKGVRMLAALTPS---GDELLDAARKLCFA 629 (2347)
Q Consensus 585 ~~~v~~~i~--------------------------------~i~s~~~~~~~~~k~la~l~~~---~~~L~~aar~La~a 629 (2347)
...+..+-. .++..-.-++...|-|++..+| ..+++.+|-.++-+
T Consensus 621 ~~~~~~~a~~vg~~s~~~l~i~e~~~~g~~~f~d~l~asakavA~~~aalvl~aK~iaavcDd~~~q~rVIaaatqcAla 700 (1003)
T KOG4261|consen 621 RQEVLRAAGHVGEASGHLLNIGEAMASGSAGFPDGLMASAKAVANATAALVLKAKNIAAVCDDCQLQNRVIAAATQCALA 700 (1003)
T ss_pred chhHhHhhcccccchhhhhhhhcccCCcccCcchhhhhchhhhhhhhHHHhhhhhhHHHhcccHHHHHHHHHHHHHHHhh
Confidence 111111111 1111222344555666666666 45677777777777
Q ss_pred HHHHHHh---cCCC--CChhHhHHHHHHhHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy15599 630 FTDLLKA---AQPH--SNQPRQNLLNAATRVGEASHHVLTEIGES-QTNEMQDTLLSLAKAVANTTAALVLKAKSVASTL 703 (2347)
Q Consensus 630 ~s~ll~~---~~p~--~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~-~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~ 703 (2347)
++.|+-- +-|. ++--+.++-.||+.++.+...+....+.. .+.+.-..++.+|+.|..|...|+.++|-.+...
T Consensus 701 TsqLVacakvvspTi~~~~cQeQl~~aar~v~~SV~~~~~~sq~a~~d~~ll~dvlaaa~dVs~aLtelleHak~~a~~~ 780 (1003)
T KOG4261|consen 701 TSQLVACAKVVSPTISNPACQEQLTEAARLVGRSVNNLVVASQAATGDFGLLGDVLAAARDVSQALTELLEHAKYSAAVA 780 (1003)
T ss_pred hccceeeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7777653 2232 23345666666666666665554332222 2222223466677777777777777766544322
Q ss_pred Chhhh----------------------HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 704 PPNQQ----------------------TSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVA 761 (2347)
Q Consensus 704 ~~~~q----------------------~~li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~ 761 (2347)
.|..+ ..+.-.|.-++.+|+.|+...+-.|..-.|-+-...|.++++.++.+|.++|.
T Consensus 781 tp~~~~eq~~~~~~~rttri~~s~gd~~emvR~Ar~l~qttqlLve~~qgeA~~~~dle~~~~Llsaak~ladstaqmvl 860 (1003)
T KOG4261|consen 781 TPRGRYEQATDEILYRTTRIFVSMGDAGEMVRQARLLAQTTQLLVEASQGEAEQEKDLENSCKLLSAAKRLADSTAQMVL 860 (1003)
T ss_pred CCCCCcccCCceeEEEEeeeeeecCCHHHHHHHhHHhhhcHHHHHHHHhhhhhcccchhhHHHHHhHHhhhhhhHHHHHH
Confidence 21111 24666667777777777777777777666666677777777777777777777
Q ss_pred HhhhccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy15599 762 MCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATA 841 (2347)
Q Consensus 762 aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~ 841 (2347)
+++....+|...++ ..+ .-++.+.|+.....+.-+ .|. ..+..+++-+ ||.-+-++.
T Consensus 861 aak~ass~p~~~~~-q~r---lrkaAe~lr~~Tn~Aaq~----------aik---q~i~qrLefA------aKqaa~~aT 917 (1003)
T KOG4261|consen 861 AAKGASSNPSAEDQ-QQR---LRKAAEGLRAATNAAAQN----------AIK---QKIVQRLEFA------AKQAAAAAT 917 (1003)
T ss_pred HHhhhcCCchhHHH-HHH---HHHhhHHHHHHhHHHHHh----------HHH---HHHHHHHHHH------HhHHHHHHH
Confidence 77777776654211 111 112223333322221110 000 1123344444 677777777
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy15599 842 QLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELR 905 (2347)
Q Consensus 842 ~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~ 905 (2347)
.-|......+....++.....|+..++.+++.+.+||+..++-...|+|+++|-.|..++..+-
T Consensus 918 qtISAaq~Avqt~q~~~a~e~lvQ~Cv~va~~Ip~Lvq~~~g~~aq~d~~~aql~li~~~~~fl 981 (1003)
T KOG4261|consen 918 QTISAAQNAVQTAQLHAAMETLVQSCVAVADTIPRLVQGVRGSQAQSDDRSAQLALISESQTFL 981 (1003)
T ss_pred HHHHhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhCCcccccCCCChhhhHHHHHhhhHhh
Confidence 7777777777766677667789999999999999999999999999999999999988888764
No 7
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=100.00 E-value=3.4e-37 Score=328.80 Aligned_cols=156 Identities=60% Similarity=0.891 Sum_probs=144.0
Q ss_pred hHHHHhhhhHhhHHHHHHHHHhhccccCCCCCCCCccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCC--Cc
Q psy15599 508 SQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQIAAMNAATAQVVTMTSGEVT--DY 585 (2347)
Q Consensus 508 ~q~al~~~i~~~~~~v~~a~~el~~~~~~~~~~~d~as~~w~~~~~~~~k~~v~~~~~a~~a~~a~~~~~~a~~~~--d~ 585 (2347)
|||||++||+.|+++|+.|..+|+.|.++|++|+|++|++||+|++|++||+|++++++|+++||+|||+|+|+|+ ||
T Consensus 1 aQrAL~~tI~~g~~~v~~A~~~L~~~~~lp~lg~D~aS~~Wr~~~ld~skq~V~s~laAm~AatAqvv~~Ta~~~~~~d~ 80 (161)
T PF09141_consen 1 AQRALLGTISAGQRAVQAAEEELDTPAELPPLGSDPASKRWRQNTLDVSKQNVNSQLAAMNAATAQVVNLTAGNPEETDY 80 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTS-----S--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTSSCHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccch
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998886 99
Q ss_pred cchhhhhhhhhcchhhHhhhhHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHH
Q psy15599 586 SGVESAITSISHTLPEMSKGVRMLAALTPS---GDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHV 662 (2347)
Q Consensus 586 ~~v~~~i~~i~s~~~~~~~~~k~la~l~~~---~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~L 662 (2347)
++||++|++|+|||+||+++||+|++||+| +++|++|+|.||++|+|||++.+|++.++||++|+||+++|+++++|
T Consensus 81 tavgaAittIssnl~em~k~vr~laaL~d~~~~~~~Ll~Aar~L~~A~sdll~sa~p~~~e~Rq~ll~AA~~vg~as~~l 160 (161)
T PF09141_consen 81 TAVGAAITTISSNLPEMAKGVRMLAALMDDEGDGDKLLDAARKLCGAFSDLLKSAEPESKEPRQNLLEAASRVGEASGQL 160 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTSTTT-SSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999966 89999999999999999999999999999999999999999999988
Q ss_pred H
Q psy15599 663 L 663 (2347)
Q Consensus 663 l 663 (2347)
|
T Consensus 161 L 161 (161)
T PF09141_consen 161 L 161 (161)
T ss_dssp H
T ss_pred C
Confidence 6
No 8
>KOG3530|consensus
Probab=100.00 E-value=1.4e-33 Score=344.66 Aligned_cols=275 Identities=21% Similarity=0.331 Sum_probs=245.5
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHH
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLK 163 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k 163 (2347)
.|....|+|+|+||+.+.+.+.....+.++++.||.+|.|.+.+||||-|.+...
T Consensus 7 ~k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~DYFGLry~D~~~------------------------- 61 (616)
T KOG3530|consen 7 SKKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEKDYFGLRYQDSSK------------------------- 61 (616)
T ss_pred CCcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceeeeeccceeeechhh-------------------------
Confidence 4567789999999999999999999999999999999999999999999986521
Q ss_pred HHHHHhhhccCccccccccchhhhhcC-CCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHH
Q psy15599 164 MEQLRKKLKTDDEVNWIDFSKTLREQG-IDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLAC 242 (2347)
Q Consensus 164 ~~~Lk~~l~~~~~~~WLd~~ktL~eQg-v~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai 242 (2347)
..+|||+.+++.+|- +.++++|+||+|||.+|++.+ +++.++++||+|+++||+.|+++|+.+.|+
T Consensus 62 ------------~~hWLD~tK~I~kqvK~gppytL~~rVKfY~sdP~~L-ree~tRYqfflQlKqDll~GRL~Cp~~~Aa 128 (616)
T KOG3530|consen 62 ------------VRHWLDPTKSIKKQVKIGPPYTLHLRVKFYPSDPNNL-REENTRYQFFLQLKQDLLSGRLYCPFETAA 128 (616)
T ss_pred ------------cceecCcchhHHHHhccCCCeEEEEEEEeccCChhhh-hchhhHHHHHHHHHHHHhcCCCCCchhhHH
Confidence 249999999999875 456899999999999999964 789999999999999999999999999999
Q ss_pred HHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEE
Q psy15599 243 QLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLV 322 (2347)
Q Consensus 243 ~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~V 322 (2347)
+||||.+|.++|||++.+|.++|..-.+|+|.+ ...++.+|++.||+++|+++.+|+..||+.++.|.+||+-.+.|
T Consensus 129 eLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Q---te~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V 205 (616)
T KOG3530|consen 129 ELAALILQSELGDYNEEEHTGGYVSEFRFLPNQ---TEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPV 205 (616)
T ss_pred HHHHHHHHHHhcCCChhhccccceeeeEecccc---cHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceee
Confidence 999999999999999999999999999999987 67899999999999999999999999999999999999999999
Q ss_pred EEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc------CcEEEEech---HHH
Q psy15599 323 KEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS------DNYYSVQTT---EAE 393 (2347)
Q Consensus 323 k~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~------~~~f~~~T~---q~k 393 (2347)
+.+ +| .+..||+++.||.+|+.+++.- .|.|..|.++.|.++.|++.+.+.. ...|.|... -|+
T Consensus 206 ~g~-dg----~ey~LGLTptGIlvf~g~~kig--~f~WpkI~KvdFk~kk~~L~v~edd~~~~~q~hTf~F~~~~~~AcK 278 (616)
T KOG3530|consen 206 KGH-DG----SEYYLGLTPTGILVFEGKKKIG--LFFWPKITKVDFKGKKFTLVVSEDDDQGREQEHTFVFRLPSPKACK 278 (616)
T ss_pred ecC-CC----ceeEeeccCceEEEEECCceee--EEecchheEeeccCcEEEEEEeeccccCCcccceEEEeCCCcchhH
Confidence 874 43 3789999999999999887766 4667799999999999999994321 236777764 489
Q ss_pred HHHHHHHHHHHHH
Q psy15599 394 QIQQLIAGYIDII 406 (2347)
Q Consensus 394 ~I~~LI~gYi~l~ 406 (2347)
.+|.+....|-++
T Consensus 279 hLWKCavEhhaFF 291 (616)
T KOG3530|consen 279 HLWKCAVEHHAFF 291 (616)
T ss_pred HHHHHhhhccceE
Confidence 9999999988444
No 9
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.96 E-value=1.7e-28 Score=285.78 Aligned_cols=200 Identities=38% Similarity=0.624 Sum_probs=179.1
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHH
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKM 164 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~ 164 (2347)
++.+.++|++|||+.+++.+++++|+.|++..||+++||.+.++||||+...++.
T Consensus 1 ~~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~------------------------- 55 (207)
T smart00295 1 PKPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDED------------------------- 55 (207)
T ss_pred CCcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCC-------------------------
Confidence 3567899999999999999999999999999999999999999999999875321
Q ss_pred HHHHhhhccCccccccccchhhhhcCCC-CCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHH
Q psy15599 165 EQLRKKLKTDDEVNWIDFSKTLREQGID-ENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQ 243 (2347)
Q Consensus 165 ~~Lk~~l~~~~~~~WLd~~ktL~eQgv~-e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~ 243 (2347)
...|+++.+++.++... ..+.|+||+|||+.+......|+++++++|.|++++|++|++||++++++.
T Consensus 56 -----------~~~~l~~~~~l~~~~~~~~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~ 124 (207)
T smart00295 56 -----------LSHWLDPAKTLLDQDVKSEPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALL 124 (207)
T ss_pred -----------cCeeCCCccCHHHhcCCCCCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 12799999999998866 578999999999776443357999999999999999999999999999999
Q ss_pred HHhHHHhhhcCCCCCCCC-CCCccccccccchhhhhh-----hhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCc
Q psy15599 244 LAGIQTHIQFGDYNPSKH-KPPFLDLKEFLPQSYVKV-----KGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGV 317 (2347)
Q Consensus 244 LAALqlQie~GD~~~~k~-~~~~l~l~~~lP~~~lk~-----k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~ 317 (2347)
||||++|+++||+++..+ ...+..+++|+|+.+.+. +.|+++|.+.|+++.|+++.+||.+||+++++||+||+
T Consensus 125 Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~ 204 (207)
T smart00295 125 LAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGV 204 (207)
T ss_pred HHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCc
Confidence 999999999999987665 456678999999998763 47999999999999999999999999999999999999
Q ss_pred EEE
Q psy15599 318 TFF 320 (2347)
Q Consensus 318 t~F 320 (2347)
++|
T Consensus 205 ~~f 207 (207)
T smart00295 205 ELF 207 (207)
T ss_pred ccC
Confidence 998
No 10
>KOG0792|consensus
Probab=99.93 E-value=1.5e-25 Score=287.71 Aligned_cols=279 Identities=19% Similarity=0.339 Sum_probs=233.6
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHHH
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQ 166 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~ 166 (2347)
...++|.|+|....++++....+..+.++.+|.+|+|++.+||||....+
T Consensus 22 ~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~~yFgl~~~~~------------------------------ 71 (1144)
T KOG0792|consen 22 CVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELREKEYFGLLWSPD------------------------------ 71 (1144)
T ss_pred eEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcccccccccccccCC------------------------------
Confidence 55789999999999999999999999999999999999999999432211
Q ss_pred HHhhhccCccccccccchhhhhcCCCC--CceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHH
Q psy15599 167 LRKKLKTDDEVNWIDFSKTLREQGIDE--NEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQL 244 (2347)
Q Consensus 167 Lk~~l~~~~~~~WLd~~ktL~eQgv~e--~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~L 244 (2347)
+.++.+|+|+.|.|+.|++.. .+.|+||+|||+.+++-+ .|+.+++++|+|++.||+.|++||+.+.++.|
T Consensus 72 ------k~~~~rWvdleK~lkkql~k~a~~p~l~frV~fyV~~p~~L-qeE~TRyqyylQvK~di~eGrl~Ct~~qailL 144 (1144)
T KOG0792|consen 72 ------KPDQIRWVDLEKPLKKQLIKVANPPLLHFRVKFYVPDPSGL-QEEATRYQYYLQVKKDILEGRLPCTLNQAILL 144 (1144)
T ss_pred ------ccCccceeccchhHHHhhhccCCCceEEEEEEEEecChhHH-HHHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence 234569999999999998765 789999999998888875 78899999999999999999999999999999
Q ss_pred HhHHHhhhcCCCCCCCCCCCccccccccchhhhhhh----hHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEE
Q psy15599 245 AGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVK----GIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFF 320 (2347)
Q Consensus 245 AALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k----~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F 320 (2347)
|.|..|++||||+...+.+ |+.--.++|....... +++.+|.+.|+.+.|+.+.+|...||+.|+++.+||..||
T Consensus 145 A~yavQae~gdy~~~~s~~-~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~ 223 (1144)
T KOG0792|consen 145 ASYAVQAEFGDYNQKQSQD-GLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFH 223 (1144)
T ss_pred HHhhhhhhhcchhhhcCCc-cchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceec
Confidence 9999999999999655543 3333344455444333 6889999999999999999999999999999999999999
Q ss_pred EEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCcC-------cEEEEechHHH
Q psy15599 321 LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSD-------NYYSVQTTEAE 393 (2347)
Q Consensus 321 ~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~-------~~f~~~T~q~k 393 (2347)
.+++. . +.++.|||...||.++..+-.+. ..|||.+|.++.++++.|-|...+... .++.....-++
T Consensus 224 ~akD~-~----g~~i~lGi~~~Gi~V~~~~g~~~-~~~~W~di~~is~~ks~~~le~~~~~~~~r~t~~~F~~~~~~~ak 297 (1144)
T KOG0792|consen 224 RAKDL-H----GNDINLGIARVGILVPGQNGRQS-VKFPWGDIIKISFKKSTFGLEQRNKDSESRETLLGFNMLDARTAK 297 (1144)
T ss_pred ccccC-C----CcceeeeeeeceeEeeccCcccc-ceechhhhhhhhcchhhhhhhhhhccccchhhhheeeecccchhH
Confidence 99874 2 34899999999999998553333 479999999999999999998854421 13333445689
Q ss_pred HHHHHHHHHHHHHHhh
Q psy15599 394 QIQQLIAGYIDIILKK 409 (2347)
Q Consensus 394 ~I~~LI~gYi~l~lk~ 409 (2347)
.||.+|...|.++..+
T Consensus 298 ~lwk~cv~~H~Ffr~~ 313 (1144)
T KOG0792|consen 298 YLWKLCVEHHKFFRLK 313 (1144)
T ss_pred HHHHHHHHHhhHhhcc
Confidence 9999999999888644
No 11
>KOG3529|consensus
Probab=99.92 E-value=8.4e-26 Score=289.94 Aligned_cols=288 Identities=21% Similarity=0.341 Sum_probs=251.3
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHH
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLK 163 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k 163 (2347)
.++...++|+++|..-. +.|++.+|+++++..||+.+||++..||||-+.+..
T Consensus 10 ~~~~~~~rv~~~d~e~~-~~i~~~~t~~~l~dlv~~~~glre~~yfgl~~~d~~-------------------------- 62 (596)
T KOG3529|consen 10 MTKPINVRVTTMDAELE-FAIQPKTTGKQLFDLVVKTIGLRESWYFGLQYTDSK-------------------------- 62 (596)
T ss_pred ccCCcceeeeehhhhhh-hhhCcchhHHHHHHHHhccCCCchhhhcccccccCC--------------------------
Confidence 45567799999998877 999999999999999999999999999999888652
Q ss_pred HHHHHhhhccCccccccccchhhhhcCCCC--CceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHH
Q psy15599 164 MEQLRKKLKTDDEVNWIDFSKTLREQGIDE--NEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLA 241 (2347)
Q Consensus 164 ~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e--~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~a 241 (2347)
++..||..++....|.+.. +..|+|+.|||+.+......+.++.+|+|+|++..|+.+.++|+.|..
T Consensus 63 -----------~~~~wl~~d~~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~ 131 (596)
T KOG3529|consen 63 -----------GEPTWLKLDKKVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETS 131 (596)
T ss_pred -----------CCcchhhccchhhhhhcCCCCCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH
Confidence 2358998888877776543 468999999999887744467788999999999999999999999999
Q ss_pred HHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhh-----hHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCC
Q psy15599 242 CQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVK-----GIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYG 316 (2347)
Q Consensus 242 i~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k-----~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG 316 (2347)
+.||+|++|+.+|||+...|+.+++.....||..++... .|+.+|...|..+.|++..+|++.|+++++.+|+||
T Consensus 132 ~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~yg 211 (596)
T KOG3529|consen 132 VLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYG 211 (596)
T ss_pred HHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999988643 699999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCcceeEEEEecCCceEEEeCCcc-ceeeeeeccccceeeeeCceEEEEeCCCcCcEEEE---echHH
Q psy15599 317 VTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTK-EIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSV---QTTEA 392 (2347)
Q Consensus 317 ~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tk-evl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~---~T~q~ 392 (2347)
+.+|.++.+ +| .+.||||+..|+.+|+...+ .+-..|||.+|+++.++.++|.|...|..-..|.| .+.-.
T Consensus 212 vny~~i~~k-~g----t~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf~~k~id~~~~~f~~~~~~~~~~ 286 (596)
T KOG3529|consen 212 VNYFEIKNK-KG----TDLWLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKFHIKPIDKKASDFSFYAPRLRIN 286 (596)
T ss_pred cceeecCCC-CC----CccccccccCCccccccccCCCCCCCCCccccCCCCCCcccccCCCCCcccCcccccccccccc
Confidence 999999875 33 47899999999999997655 35568999999999999999999998885333444 44557
Q ss_pred HHHHHHHHHHHHHHHhhhcccC
Q psy15599 393 EQIQQLIAGYIDIILKKKMSKD 414 (2347)
Q Consensus 393 k~I~~LI~gYi~l~lk~rr~kd 414 (2347)
+.|..+|.+-|.++|++++..+
T Consensus 287 ~~~l~~~~~~~~l~~rr~~~~t 308 (596)
T KOG3529|consen 287 KRILDLCMGNHELYMRRRKPDT 308 (596)
T ss_pred hhhhhhhhccchhhhhcccccc
Confidence 9999999999999998877653
No 12
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=99.90 E-value=1.4e-23 Score=219.31 Aligned_cols=124 Identities=52% Similarity=0.762 Sum_probs=117.7
Q ss_pred chhHhHHHHHHHHHHHHHHhHHhhhhcccCchhhhhhHHHHHHHHhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHHH
Q psy15599 1629 SYVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACI 1708 (2347)
Q Consensus 1629 s~~~~qt~m~~~ak~ia~~~~~~~~~a~~~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~~ 1708 (2347)
||+||||+|++++|+|++++++|++++.++|++|++++.+|++.|..|+.+++|++++++|++++.+|+..+++||.+|+
T Consensus 1 SFvdyQt~mv~~ak~ia~~a~emv~ks~~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~LG~sc~ 80 (125)
T PF08913_consen 1 SFVDYQTRMVEAAKEIARTAQEMVTKSRTNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQDLGMSCI 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15599 1709 NTVTMAATCQTS-GDDYTHREFADTNRVLAEKVSQVLYALQAGSR 1752 (2347)
Q Consensus 1709 ~lv~aa~~~~~~-~d~~t~~~l~~~ar~v~e~v~~l~aal~~g~~ 1752 (2347)
.|++++|..+++ .|++++++|++++|.|+|+|.+||++||+|+|
T Consensus 81 ~Lv~aag~~~~~P~d~~~k~~L~~~AR~v~EkVs~VlaaLqagsr 125 (125)
T PF08913_consen 81 ELVQAAGAVQSNPSDPYAKRELADAARAVSEKVSQVLAALQAGSR 125 (125)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHhCcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999998 69999999999999999999999999999986
No 13
>KOG3527|consensus
Probab=99.88 E-value=9.3e-23 Score=257.06 Aligned_cols=277 Identities=20% Similarity=0.343 Sum_probs=238.6
Q ss_pred cccccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhh
Q psy15599 82 EYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERD 161 (2347)
Q Consensus 82 ~~~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~ 161 (2347)
.+..+...|+|.|+||+...+.|+......+++..+|++|+|-+.+||||-+....
T Consensus 26 ~~~~k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEkdyfgl~~~~~~------------------------ 81 (975)
T KOG3527|consen 26 KFVTKDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEKDYFGLTYLTSS------------------------ 81 (975)
T ss_pred cccCCCccceEEEeeCCcceeeeecccccchhHHHHhhccchhhhhhceeEEecCC------------------------
Confidence 34447778999999999999999999999999999999999999999999887642
Q ss_pred HHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHH
Q psy15599 162 LKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLA 241 (2347)
Q Consensus 162 ~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~a 241 (2347)
.+.+|||+.+.+..|-....|.|.|-+||||+++..+.+|.. .++|++|+|.||+.|++||++-..
T Consensus 82 -------------~~~~wlD~~k~i~k~vr~~~w~f~f~vKfyPp~Psql~Edit-rY~lcLq~R~Dil~GrlPcsfvt~ 147 (975)
T KOG3527|consen 82 -------------EQKNWLDPAKEIKKQVRSFPWNFTFNVKFYPPDPSQLTEDIT-RYYLCLQLRQDILSGRLPCSFVTH 147 (975)
T ss_pred -------------CCccccccchhhhcccccCccceeEeeeeCCCChHhccccch-hheehhhhhhhhhcCccccchhhh
Confidence 235999999999998877799999999999988887767765 666999999999999999999999
Q ss_pred HHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEE
Q psy15599 242 CQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFL 321 (2347)
Q Consensus 242 i~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~ 321 (2347)
..|+.|-+|.++|||++..|...|+.-..|-|.. .+.++.++.+.|+.++||++.+|..+||+.+..|-+||+-...
T Consensus 148 allgsy~vq~E~gdYd~ee~~~~y~~df~~aPnq---t~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~ 224 (975)
T KOG3527|consen 148 ALLGSYTVQSELGDYDPEEHGSDYLSDFKFAPNQ---TKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHH 224 (975)
T ss_pred hhhhhHhHHhHhccCCHHHcccchhhhhccCcch---hhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhccccccc
Confidence 9999999999999999988877787777888876 4678999999999999999999999999999999999999999
Q ss_pred EEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc----CcEEEEe---chHHHH
Q psy15599 322 VKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS----DNYYSVQ---TTEAEQ 394 (2347)
Q Consensus 322 Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~----~~~f~~~---T~q~k~ 394 (2347)
.+++ . .+++.|||+.+|+.+|.+.-+. ..|.|..|.++.+....|.|++.-.. ...+-|+ ..-++.
T Consensus 225 aKds-e----gvdi~lgvca~glliy~d~lri--nrfawPKilKisykR~~FyiKirPge~eq~EstigFklpnhraakr 297 (975)
T KOG3527|consen 225 AKDS-E----GVDIMLGVCASGLLIYRDRLRI--NRFAWPKILKISYKRSNFYIKIRPGEFEQFESTIGFKLPNHRAAKR 297 (975)
T ss_pred cccc-c----cceeeecccccceEEeechhhh--ccccCchhhhhccceeeeEEEecCCccccccccccccccchhhHHh
Confidence 9874 3 3689999999999999986544 46777799999999999999884322 1123333 345789
Q ss_pred HHHHHHHHHHHH
Q psy15599 395 IQQLIAGYIDII 406 (2347)
Q Consensus 395 I~~LI~gYi~l~ 406 (2347)
+|..|..+|-|+
T Consensus 298 lwk~cvEHhtff 309 (975)
T KOG3527|consen 298 LWKVCVEHHTFF 309 (975)
T ss_pred hhHhhhhcccee
Confidence 999999999665
No 14
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=99.87 E-value=2.2e-19 Score=248.14 Aligned_cols=459 Identities=19% Similarity=0.261 Sum_probs=325.7
Q ss_pred hhcchhhHhhhhHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhccc
Q psy15599 595 ISHTLPEMSKGVRMLAALTPS-----GDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGES 669 (2347)
Q Consensus 595 i~s~~~~~~~~~k~la~l~~~-----~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~ 669 (2347)
+-.+|.+++...+.++..... -..|.+..+.+.+.+.+|.......+++.++ .+.+|...+.+|...+...
T Consensus 406 g~~AL~~lv~e~~~~A~~~~~~~R~~Il~lc~~i~~l~~qL~dL~~~~~~~spea~~----la~~L~~~l~~L~~~l~~a 481 (968)
T PF01044_consen 406 GRQALRDLVEEARKLADSSDPEEREEILELCDEIEQLTNQLADLEMRGEGDSPEAKA----LAEQLSQKLDDLRQQLQKA 481 (968)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHCHCSCCSSHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccchHHhHHHHHHHHHHhcchhhhhhhccCCCcccccc----cccchhhhHHHHHHHHHHH
Confidence 334677888888888777763 2357777777777888887777776666554 5677777777776554333
Q ss_pred ----cchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccCC-CChHHHHH
Q psy15599 670 ----QTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTL-ENPACQQQ 744 (2347)
Q Consensus 670 ----~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti-~~p~~qeq 744 (2347)
+.+.|.| ...+.+ .|+..++. +...|...+.|-..+..+...+.+|+..|+.++..+ .|+...+.
T Consensus 482 ~~~qv~d~F~d-~~~pL~-------~L~~Aa~~--~~~~~g~e~~~~~~a~~F~~ha~~l~~vA~lva~~s~~d~~~v~~ 551 (968)
T PF01044_consen 482 VVDQVSDTFTD-TTTPLK-------ELVEAAKA--PSGTPGREENFEEKAQNFQEHADQLVEVARLVAAMSCTDEETVKE 551 (968)
T ss_dssp HHCHHHHHTTS-SSHHHH-------HHHHHHHT---TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHHHH
T ss_pred HHHHHHHHHHh-cCCHHH-------HHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2223322 122222 23333332 123466678888999999999999999999999876 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcch---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHH
Q psy15599 745 LMAAVKEVANAVEGLVAMCNETCTDENL---NKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLA 821 (2347)
Q Consensus 745 Li~Aak~va~at~~Lv~aa~~~~~~~~~---~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~ 821 (2347)
+..++.++...++|+|.+++..+.+|.+ .|+|..-...|.+++.+|..+++...+ .++||.+++.-+.
T Consensus 552 I~~aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le~~~~~W~~~v~~L~~~vd~i~d---------~~eFl~vSe~~i~ 622 (968)
T PF01044_consen 552 IRHAAEQLEKLTPQVINAARILAANPSSKAAKEHLEVFREAWEDAVEDLTEAVDEITD---------VDEFLAVSEEHIL 622 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHH
Confidence 9999999999999999999999888765 799999999999999999999997764 3457777654432
Q ss_pred ----------hcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q psy15599 822 ----------ASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDI 891 (2347)
Q Consensus 822 ----------~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~ 891 (2347)
.-++++.|++.+..|++.++++++.+++++++.+||.++++|..+.+.|.+++.+|++++|.++.||.|+
T Consensus 623 ~d~~~c~~Al~~~d~~~~~~~a~~I~~ra~rV~~va~~e~dn~eDp~y~~~v~~a~~~L~~~i~~~v~~ak~va~n~~d~ 702 (968)
T PF01044_consen 623 KDVDKCEKALRSGDPQELDRAASSIAGRANRVIQVAKREMDNSEDPIYRNRVLEAIDQLEQAIPPMVAAAKEVATNPLDK 702 (968)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-------cchHHHHHhhhhccccccccCCcchHHHH--HHHHHHHHHhhhhccC--CCCCCCCc
Q psy15599 892 MKQEALVTTVEELRQA-------ATPTLRYKLFNKSQTNEFEGLLPGQQEIE--EITEIIESTYEQIHTD--DFPRSTKP 960 (2347)
Q Consensus 892 ~~q~~L~~AAe~L~~A-------t~~~i~~~~~~~l~~~~~~~~lpgq~~l~--~Aie~i~~a~~~l~~~--~~p~~~~~ 960 (2347)
..+++|++.++.|.++ ..+.-..-++.+... .+|...+++ +..-..+.....-..+ ..|++...
T Consensus 703 ~a~~~~~~~~~~li~av~~V~~av~~~~~~~L~~~~~~-----~~~~~~~~e~ed~~a~~r~~~~~~~~~~~~~~~~~~~ 777 (968)
T PF01044_consen 703 NAQQQFRESNKELIDAVRQVRDAVRDIRHPVLMNRSPE-----DLPSDSELEQEDEQAPPRSPSPEDTEPPPRPPPPEET 777 (968)
T ss_dssp TTHHHHCHHCCHHHHHHHHHHHHHCHHHHHHC---S----------------------------------------TTS-
T ss_pred chhhhHHHHHHHHHHHHHHHHHHccCCCcchhcccCcc-----cccCCCCCccccCCCCCCCCCchhhccCCCCCCCccc
Confidence 9999998886666554 111111112222210 000001111 0000000000000000 00000000
Q ss_pred ---------------hhHHHHHHHHHHHHHHHHH-------HHHHh--------------hcC----CCCchhHhhHHHH
Q psy15599 961 ---------------IGRLQQELSSAATGLSETT-------NEVIS--------------SVK----NPANLPASSKQYS 1000 (2347)
Q Consensus 961 ---------------~~~~q~~L~~aA~~L~~a~-------~~lv~--------------~~~----~~~~L~~~sk~~a 1000 (2347)
....-.++..++.+|.+.+ |++|. ..| +..+|+.++|.|+
T Consensus 778 ~~~~~~~l~~e~~~~~~~~~~~~~~~~~~l~~e~~kW~~~~Ndiv~~ak~Ma~~m~~m~~f~rg~g~~~~dli~~Ak~ia 857 (968)
T PF01044_consen 778 DREKMSRLPEEEKAKIAKQVQPIKEAASELDQEVEKWDDQGNDIVALAKSMASMMMEMSQFTRGEGKTKKDLITAAKKIA 857 (968)
T ss_dssp --S-----S-SSSTTCCCH-HHHHHHHHHHHHHHTTB-STT-HHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHH
T ss_pred chHHHHhCCHHHHhChhhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 0111145555555555442 44433 332 4568999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh--hhHHHHHHHHHhhcCC------CCchhHHHHHHHHHHHHHHHHH
Q psy15599 1001 HSLQNLVDIGMEIISTTESRETQTKMLSSLKSVS--TSSSKFLSTARSAALD------PSASNSKSQLSAAARNVADSIN 1072 (2347)
Q Consensus 1001 ~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~--~~s~kLl~~aKa~~~~------p~d~~a~~qL~~aAr~l~~sin 1072 (2347)
+...+|...++.++.+|+|++.+.+|+.++++|- -..++++.++|+.... ++|..+.++|.++||||+.+|.
T Consensus 858 ~~~~~~~~~ar~ia~~c~d~~~k~~Ll~~~~~i~~~~~QL~i~s~VKa~~~~~~~~~~~~~~~~~~~li~~aknLm~~V~ 937 (968)
T PF01044_consen 858 EEGNKLTKLAREIADQCPDKRLKEDLLAYLERIPTICQQLKIISTVKADVQGSSGELSVSDLESAESLIQNAKNLMNAVV 937 (968)
T ss_dssp HHHHHHHHHHHHHHHCBSBHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTTTT-S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHCcchhHHHHHHhHeeecHHhcCCCCCcCcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 5778888889996543 5578899999999999999999
Q ss_pred HHHHHHhhc
Q psy15599 1073 NLLNICTSA 1081 (2347)
Q Consensus 1073 ~Lv~a~~~a 1081 (2347)
+.|.+|+.+
T Consensus 938 ~~v~~~~~a 946 (968)
T PF01044_consen 938 ETVKAAEAA 946 (968)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999875
No 15
>KOG3552|consensus
Probab=99.78 E-value=1.2e-19 Score=227.69 Aligned_cols=286 Identities=22% Similarity=0.324 Sum_probs=208.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHHHH
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQL 167 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~L 167 (2347)
..+||||-||++|.|++|-+|||+||+..+-++|.|+.-++|+|..+.-..- ++
T Consensus 184 NVLKvyLENGQTKsFkfdatTtVkDVIltl~eKLsi~~iE~FsL~LE~~~s~------------~r-------------- 237 (1298)
T KOG3552|consen 184 NVLKVYLENGQTKSFKFDATTTVKDVILTLLEKLSICCIELFSLVLEHVKSL------------KR-------------- 237 (1298)
T ss_pred hHHHHHHhcCccceeeecccccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc------------cc--------------
Confidence 6799999999999999999999999999999999999999999976532110 00
Q ss_pred HhhhccCccccccccchhhhhcCCC---CCceEEEEEEeecCCC-CCCCCChhhHHHHHHHhHhhhccCCCcC--CHHHH
Q psy15599 168 RKKLKTDDEVNWIDFSKTLREQGID---ENEPVLLRRKFFFSDG-NIDSHDPVQLNLLYVQARDAVLDGTHPV--TQDLA 241 (2347)
Q Consensus 168 k~~l~~~~~~~WLd~~ktL~eQgv~---e~~~L~LRrKff~~d~-~~~~~D~v~l~lLY~Qar~dIL~G~~p~--see~a 241 (2347)
+....|++..+|..-.-+ -..+..||+-|-+.|+ +...+||+.+.|||+|++.||+.++|-. ..+-|
T Consensus 238 -------nkL~LLheqEsl~qV~~Rp~sHk~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elA 310 (1298)
T KOG3552|consen 238 -------NKLTLLHEQESLAQVAARPGSHKLRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELA 310 (1298)
T ss_pred -------ceeEeecHHHHHHHHHhCCcccceeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHH
Confidence 001233333333321111 2578999999986654 4557899999999999999999999964 56899
Q ss_pred HHHHhHHHhhhcCCC-CCCCCCCCcc----ccccccchhhhh---hhhHHHHHHHHHHhc-------cCCCHHHHHHHHH
Q psy15599 242 CQLAGIQTHIQFGDY-NPSKHKPPFL----DLKEFLPQSYVK---VKGIEKKIFSEHKNH-------VGLSELDAKVLYT 306 (2347)
Q Consensus 242 i~LAALqlQie~GD~-~~~k~~~~~l----~l~~~lP~~~lk---~k~~~~~I~~~hk~l-------~glS~~eAk~~YL 306 (2347)
+.||||++|...--. ...|...+|. .|++|+|..++. .|++++.|....|.. +.++..+||++||
T Consensus 311 LRLAALhm~~~~~a~~q~qKislKyIEkewGlE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL 390 (1298)
T KOG3552|consen 311 LRLAALHMHQHALANNQAQKISLKYIEKEWGLERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYL 390 (1298)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhhhhhhchhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHH
Confidence 999999998755322 2223333343 589999999884 567777666555543 2367889999999
Q ss_pred HHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCC-ceE-EEeCCccceeeeeeccccceeeeeC-----ceEEEEeCC
Q psy15599 307 KTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKD-SVL-RLDERTKEIMKTWPLTTVRRWGASS-----NVFTLDFGD 379 (2347)
Q Consensus 307 ~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~-GI~-ild~~tkevl~~~~~~~I~~w~~~~-----~~f~I~~~d 379 (2347)
+++-+||.||...|....+ .|. +...+.|=|+++ ||. +++.++.-+-..-.|.+|.++.++. -.+.|.+-|
T Consensus 391 ~ila~L~sYGgr~F~atl~-~~~-~~se~~LLVgpryGiSqVinak~nv~~~la~f~~~trVe~~~Ede~~~~V~i~mld 468 (1298)
T KOG3552|consen 391 DILASLPSYGGRCFSATLR-EGD-RESERVLLVGPRYGISQVINAKNNVPQPLAAFEDFTRVEVNREDEVTCSVSIFMLD 468 (1298)
T ss_pred HHHhhhhhccchhhhhhhh-hcc-cceeEEEEeccccchhHhhhcccccchhHHHhhhcceeEeeccccceEEEEEEEec
Confidence 9999999999999998875 332 233444445544 884 5666665554455677887877764 245555555
Q ss_pred CcCcEEEEechHHHHHHHHHHHHHHHHHh
Q psy15599 380 YSDNYYSVQTTEAEQIQQLIAGYIDIILK 408 (2347)
Q Consensus 380 ~~~~~f~~~T~q~k~I~~LI~gYi~l~lk 408 (2347)
-+-..|.+++.++.++.-|++||+++.+.
T Consensus 469 vk~vtllmEs~da~~lacl~aGYYRLLvd 497 (1298)
T KOG3552|consen 469 VKAVTLLMESRDACELACLLAGYYRLLVD 497 (1298)
T ss_pred cceeEEEeeccccchhhHhhhhhhhhhhc
Confidence 55568999999999999999999998764
No 16
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=99.77 E-value=2.6e-18 Score=180.02 Aligned_cols=122 Identities=23% Similarity=0.319 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHHH
Q psy15599 1791 TFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTA 1870 (2347)
Q Consensus 1791 ~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~aa~~~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~a 1870 (2347)
+|+|||++|++++|+|++.+++||+++.++|++||.++.++...|.+|++..|.+++.+. ++|.|.+|..+|+||+.+
T Consensus 1 SFvdyQt~mv~~ak~ia~~a~emv~ks~~~p~eL~~la~~lt~~y~~La~~~~~aaat~~--~~ev~~~i~~~vq~LG~s 78 (125)
T PF08913_consen 1 SFVDYQTRMVEAAKEIARTAQEMVTKSRTNPEELGTLANDLTHDYSQLAQDAKGAAATTP--SAEVQNRIKSAVQDLGMS 78 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSS--SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999988888776 999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1871 LGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKA 1914 (2347)
Q Consensus 1871 ~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~tv~~ 1914 (2347)
|..||+++|..+++|.|..++++|.++||.+.|+|++||.+|++
T Consensus 79 c~~Lv~aag~~~~~P~d~~~k~~L~~~AR~v~EkVs~VlaaLqa 122 (125)
T PF08913_consen 79 CIELVQAAGAVQSNPSDPYAKRELADAARAVSEKVSQVLAALQA 122 (125)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999997
No 17
>KOG0980|consensus
Probab=99.77 E-value=3e-17 Score=208.08 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=243.3
Q ss_pred HhhhhHhhHHHHHHHHHhhccccCCCCCCCCccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhc-CCCCCCccchhh
Q psy15599 512 LLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQIAAMNAATAQVVTMT-SGEVTDYSGVES 590 (2347)
Q Consensus 512 l~~~i~~~~~~v~~a~~el~~~~~~~~~~~d~as~~w~~~~~~~~k~~v~~~~~a~~a~~a~~~~~~-a~~~~d~~~v~~ 590 (2347)
|-|.+.+|+++++++.++|++|+++.+ .+||.|. .+..+.+...+..|.+.||+| ++++ |++..+.
T Consensus 590 l~~~~~~~~q~lq~al~~ld~P~~~~~----~~~p~~L--------lst~~~~s~n~~~~e~~~~~yla~~~-d~s~~i~ 656 (980)
T KOG0980|consen 590 LDGSLASGIQALQNALYQLDSPLHWRC----LTSPDFL--------LSTAENASVNATQFETSFNNYLADGD-DASDLIH 656 (980)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCc----CCCHHHH--------HHHHHHHHHHHHHHHHHHhhhcCCch-hhhhHhh
Confidence 446778899999999999999999966 5899999 899999999999999999999 6655 4666699
Q ss_pred hhhhhhcchhhHhhhhHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHhcCCC------CChhHhHHHHHHhHHHHHH--H
Q psy15599 591 AITSISHTLPEMSKGVRMLAALTPS--GDELLDAARKLCFAFTDLLKAAQPH------SNQPRQNLLNAATRVGEAS--H 660 (2347)
Q Consensus 591 ~i~~i~s~~~~~~~~~k~la~l~~~--~~~L~~aar~La~a~s~ll~~~~p~------~~~~rq~ll~AA~~l~~a~--~ 660 (2347)
+|+-|+..|.+...|.+.++...++ .|++++..|.+..-...|+.+..++ .+...++.++.-..+++.+ .
T Consensus 657 ~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~ 736 (980)
T KOG0980|consen 657 CVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPK 736 (980)
T ss_pred HHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccc
Confidence 9999999999999999999888866 8999999999988888888876654 2334455666666666655 2
Q ss_pred HHHHh---hccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15599 661 HVLTE---IGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVAS---TLPPNQQTSVITSATKCALATSQLVACTKVVAP 734 (2347)
Q Consensus 661 ~Ll~~---i~e~~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~---~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ 734 (2347)
.+--. +|+.+| .+|.....+|.+|+..|..-+.+... ....++.+.|+++++.+..++..||.+++.++.
T Consensus 737 ~~di~~e~l~~lld----~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm~aI~~Lv~as~~lQ~ 812 (980)
T KOG0980|consen 737 ELDIDQELLGNLLD----IEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALMEAIMALVKASRELQT 812 (980)
T ss_pred cchhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 333344 45667788899999988765443333 333788999999999999999999999988766
Q ss_pred CCC-------ChH--------HHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHh--hhc
Q psy15599 735 TLE-------NPA--------CQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHI--KVT 797 (2347)
Q Consensus 735 ti~-------~p~--------~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~--k~~ 797 (2347)
+|+ +|+ |.|+||+|+|.|+.+++.||.+++.++.+....|+|++|+.+|+.++.+|+.++ |..
T Consensus 813 EIVasgrgsas~~eFY~kNsrWTEGLISAaKAVa~aatvLVeaAdkvV~~~gkfEeLIVas~EIAAsTaQLVaASrVKA~ 892 (980)
T KOG0980|consen 813 EIVASGRGSASPNEFYKKNSRWTEGLISAAKAVAWAATVLVEAADKVVTGTGKFEELIVASQEIAASTAQLVAASRVKAD 892 (980)
T ss_pred HHHHhcCCCCCHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhHhcCCCCcHHHHHhhhHHHHHHHHHHHHHHhhcc
Confidence 554 232 999999999999999999999999999988889999999999999999999997 444
Q ss_pred CCCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy15599 798 TTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENE 854 (2347)
Q Consensus 798 ~~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~ 854 (2347)
..++. ++.+..+ +|.|.++|..||..+|......
T Consensus 893 k~S~~-----------------ld~L~~a------sk~Vtqat~~lVa~vks~~sq~ 926 (980)
T KOG0980|consen 893 KDSKK-----------------LDALEVA------SKAVTQATAQLVASVKSGQSQL 926 (980)
T ss_pred ccchh-----------------hHHHHHH------HHHHHHHHHHHHHHHhhhhhhH
Confidence 44433 4455555 9999999999999999666443
No 18
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.74 E-value=8.8e-18 Score=180.42 Aligned_cols=109 Identities=41% Similarity=0.784 Sum_probs=93.6
Q ss_pred CCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCC-CCCCCCCccc--c-----ccccc--hhhh---h
Q psy15599 212 SHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYN-PSKHKPPFLD--L-----KEFLP--QSYV---K 278 (2347)
Q Consensus 212 ~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~-~~k~~~~~l~--l-----~~~lP--~~~l---k 278 (2347)
..|+++++++|.|+|++|++|++||+.+++++||||++|+++||++ +..+..+++. + ..|+| +.+. +
T Consensus 5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~ 84 (126)
T PF00373_consen 5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMK 84 (126)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCST
T ss_pred cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhh
Confidence 4799999999999999999999999999999999999999999999 4444444432 2 24899 6655 3
Q ss_pred hhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEE
Q psy15599 279 VKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFF 320 (2347)
Q Consensus 279 ~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F 320 (2347)
.++|+++|.+.|++++|++..+|+..||++|++||+||++||
T Consensus 85 ~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 85 QKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 568999999999999999999999999999999999999998
No 19
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=99.73 E-value=2.5e-12 Score=178.88 Aligned_cols=862 Identities=14% Similarity=0.179 Sum_probs=458.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch---HHHHHHHHHHHHHHHHHHH
Q psy15599 715 ATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENL---NKDLTKAAAEVTKTLNQLL 791 (2347)
Q Consensus 715 A~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~---~eqL~~Aa~~V~~al~~Ll 791 (2347)
+..+..++.+||..++.++.+..|+..++.+..|.+.|..+...|+.++.....||-+ .+.|..+++.+=.++..||
T Consensus 42 ~~aV~~Av~~lv~vg~~ia~~~~d~~lk~eM~~A~~~v~~ag~~l~~aa~~l~~dP~s~~~R~~lv~aar~lL~~vt~lL 121 (968)
T PF01044_consen 42 VQAVEEAVENLVEVGEEIANESPDEILKQEMPEACEEVRDAGKNLLQAAQELRDDPCSSPKRKKLVRAARGLLSGVTRLL 121 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456667777777777777766666677777777777777777777777665555533 5667777777777777777
Q ss_pred HHhhhcCCCCCcchHHHHHHHHhhHHHHH------HhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Q psy15599 792 NHIKVTTTEPAQDVETAVEVMMSSSDRLL------AASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLA 865 (2347)
Q Consensus 792 ~~~k~~~~~~~~~~~~~~~~il~at~~L~------~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~ 865 (2347)
-..+.+. +..|+....... ....+..+++...+.+...+..|...+..-...-.|+.+|++|..
T Consensus 122 llaD~~~----------Vr~Ii~~~~~v~~~l~~~e~~~s~~el~~~~~~f~~~~~~l~~~~~~Rq~eL~~~~~r~~l~~ 191 (968)
T PF01044_consen 122 LLADMAD----------VRKIIRACKKVLDYLERLESAESMEELVQAFKDFGPEMVELAKLTGRRQQELKDPEHRDQLAA 191 (968)
T ss_dssp HHHHHHH----------HHHHHHHHHHHHHHHHHGCT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHCTBSSHHHHHHHHH
T ss_pred ccccccc----------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6655443 333444443333 245566789999999999999999988887777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHHHhhcchHHHHHhhhhccccccccCCcchHHHHHHHH
Q psy15599 866 AAKNLAEATARMVEAARQCASHPQDI-----MKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITE 940 (2347)
Q Consensus 866 aAk~La~ats~LV~aaK~~a~~p~d~-----~~q~~L~~AAe~L~~At~~~i~~~~~~~l~~~~~~~~lpgq~~l~~Aie 940 (2347)
+-..|...++-|+-++|.|..+++|| +.+..=.-..+. +.+|+.
T Consensus 192 a~~~Lk~~~p~L~ts~k~~l~h~~~p~~~~~~a~~nRd~v~~~-------------------------------m~~al~ 240 (968)
T PF01044_consen 192 ARAVLKKCSPMLLTSSKTYLRHPNDPGKEVEEARENRDYVFKQ-------------------------------MRDALN 240 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTSSTHHHHHHHHHHHHHH-------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-------------------------------cccccc
Confidence 99999999999999999999994443 222221112222 344444
Q ss_pred HHHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCH
Q psy15599 941 IIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESR 1020 (2347)
Q Consensus 941 ~i~~a~~~l~~~~~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~ 1020 (2347)
.|....+.-..+.=.............+...-.+|.++-..+-.....+...+ -..+.+++..+......+ .|
T Consensus 241 ~Ii~vlq~~~~ded~~~~~~~~~~~~~~~~~~~~l~~a~d~l~~~~a~~g~~g------e~~~r~I~~~a~~~~~~~-~p 313 (968)
T PF01044_consen 241 EIIRVLQLTSYDEDEWDSDDLEVMKSALAGIGSKLASALDWLDDPNASPGGAG------EKAIRQIVDPATYIAERC-RP 313 (968)
T ss_dssp HHHHHHTHTSSCSCCCCHHHHHHHHHHHHHHHCTHHHHHHHHCSTTS-TTTCC------HHHHHHHHHHHHHHHHTS-SC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccc-cc
Confidence 44443321111110000001111112222222234444333322221111111 122233334333333322 34
Q ss_pred HHHHHHHHHHHHH---hhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHh
Q psy15599 1021 ETQTKMLSSLKSV---STSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQS 1097 (2347)
Q Consensus 1021 ~~q~~li~~~~~i---~~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a~~~aapg~~E~D~Al~~I~~ 1097 (2347)
..+..|...+..+ .+....+=..-+ -..|..-....+|..+-.++...|.+.+....+.. +.+--..-...++.
T Consensus 314 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~a~~l~e~~~~l~~~v~~al~~~~~~~-~~~~~~~~~~kl~q 390 (968)
T PF01044_consen 314 SLEERLERIISGAALMADSLCTRRERGE--GASPQAIVLARQLAECNGELSQLVEQALQNVEKSG-GAQAAHTVAGKLEQ 390 (968)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCHHCH--GGSHHHHHCHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 4444444444333 333322221111 12222222233444444344444445444443321 11111222334455
Q ss_pred hccccCCCCCCCCcccHHHHHHHHHHhhhhHHHHHHHHHHHhhccCcchhhhhhhhhHHhhhhhhhhHhhhhhhhh--hc
Q psy15599 1098 MKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVA--IS 1175 (2347)
Q Consensus 1098 l~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~lg~amaql~~~a~~~~~~~~g~s~~~~a~al~~L~eaaa~aa~~va--vs 1175 (2347)
....|.+|..+ .+......+..|.+..+.+..+.. ..- |+-...+|.-++... ..+.- ..
T Consensus 391 A~~wl~~p~~d-d~g~g~~AL~~lv~e~~~~A~~~~---~~~------------R~~Il~lc~~i~~l~--~qL~dL~~~ 452 (968)
T PF01044_consen 391 AQRWLANPGVD-DGGAGRQALRDLVEEARKLADSSD---PEE------------REEILELCDEIEQLT--NQLADLEMR 452 (968)
T ss_dssp HHHHHCSTSS---SCHHHHHHHHHHHHHHHHHHTSS---HHH------------HHHHHHHHHHHHHHH--HHHHHHCHC
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHHHHhccc---cch------------HHhHHHHHHHHHHhc--chhhhhhhc
Confidence 55666776654 244555566666666666555432 000 111111222221100 00100 11
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhhhcCCCChhHhHHHHHHHH
Q psy15599 1176 EATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAK 1255 (2347)
Q Consensus 1176 d~~s~~~~~~liD~~~~~ra~~~I~~a~~~l~~~~~~~~q~l~~a~~ia~~t~~l~~~c~~as~~~~n~~~~~~~~~~ak 1255 (2347)
.. +.++ ..-..+..+......|....+. ..-.|+.+.+.
T Consensus 453 ~~--------------------------------~~sp-ea~~la~~L~~~l~~L~~~l~~--------a~~~qv~d~F~ 491 (968)
T PF01044_consen 453 GE--------------------------------GDSP-EAKALAEQLSQKLDDLRQQLQK--------AVVDQVSDTFT 491 (968)
T ss_dssp SC--------------------------------CSSH-HHHHHHHHHHHHHHHHHHHHHH--------HHHCHHHHHTT
T ss_pred cC--------------------------------CCcc-cccccccchhhhHHHHHHHHHH--------HHHHHHHHHHH
Confidence 00 0011 1111122222333333222221 12244555555
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhhhhccCchhhhhcccccCchhhhhHHHHHHHHHHHHHHH
Q psy15599 1256 DVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAIIESS 1335 (2347)
Q Consensus 1256 ~v~~at~~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l~~~as~~efa~~~~~is~~~~~~q~~iv~~~k~i~~ss 1335 (2347)
++..-...|+++.+.-.+ .|++.+.+......+.+..+.|+..+ .|+ ..++......-+-|..+...+-.-.
T Consensus 492 d~~~pL~~L~~Aa~~~~~--~~g~e~~~~~~a~~F~~ha~~l~~vA---~lv---a~~s~~d~~~v~~I~~aa~~l~~L~ 563 (968)
T PF01044_consen 492 DTTTPLKELVEAAKAPSG--TPGREENFEEKAQNFQEHADQLVEVA---RLV---AAMSCTDEETVKEIRHAAEQLEKLT 563 (968)
T ss_dssp SSSHHHHHHHHHHHT-TT--STTCHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 555555666666665322 24445556666666666666665332 121 2222111222333567777888888
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15599 1336 CSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPH 1415 (2347)
Q Consensus 1336 ~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aPGQkECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~~ 1415 (2347)
.+++.+|+.++.+|.+..++..|-.-.++-.+.++.|.+++.+...-......+...|. ++++...
T Consensus 564 pqvi~Aa~~l~~~P~sk~A~e~le~~~~~W~~~v~~L~~~vd~i~d~~eFl~vSe~~i~---~d~~~c~----------- 629 (968)
T PF01044_consen 564 PQVINAARILAANPSSKAAKEHLEVFREAWEDAVEDLTEAVDEITDVDEFLAVSEEHIL---KDVDKCE----------- 629 (968)
T ss_dssp HHHHHHHHHCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHH---HHHHHHH-----------
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHHHHHH-----------
Confidence 99999999999999999999999999999999999998887654332322222222221 2222211
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhHHHHH-HHhhHHHHhhhHHHHhhhhchhhhhHHHhhhcccChhhhhHHHHhhhHH
Q psy15599 1416 YNSASLQMSAEKTEQAANEILTRLEPLRQA-AKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTV 1494 (2347)
Q Consensus 1416 ~~~~s~~~~~e~~~~~~~~l~~~i~~l~~A-~~~~~e~l~~~v~~~~~~~~~l~~~a~~aas~~~~~~~q~~~~~~sK~v 1494 (2347)
.| ..++++.+...+..+.....-.+..+..-.-+..||.-+..+.+.++.|
T Consensus 630 ----------------------------~Al~~~d~~~~~~~a~~I~~ra~rV~~va~~e~dn~eDp~y~~~v~~a~~~L 681 (968)
T PF01044_consen 630 ----------------------------KALRSGDPQELDRAASSIAGRANRVIQVAKREMDNSEDPIYRNRVLEAIDQL 681 (968)
T ss_dssp ----------------------------HHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 11 2245555555555555555566666667777788899899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccccchHHHHHHHHHHHHHHHhhhhhhc--ccccccccccccccccCCCCCCCCCcccc
Q psy15599 1495 AECLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSLDHFT--GVVNTFVDSITKSMQQIPDPNQPNSHYAS 1572 (2347)
Q Consensus 1495 ~es~~~L~~~aK~~~gnp~~~~~~~~~~~a~~~~~eav~~l~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1572 (2347)
.+....|+..+|....||.+.+.+..+.+....+.+++..+...+.... .+.....+.. .. .+.+...+.+.+..+
T Consensus 682 ~~~i~~~v~~ak~va~n~~d~~a~~~~~~~~~~li~av~~V~~av~~~~~~~L~~~~~~~~-~~-~~~~e~ed~~a~~r~ 759 (968)
T PF01044_consen 682 EQAIPPMVAAAKEVATNPLDKNAQQQFRESNKELIDAVRQVRDAVRDIRHPVLMNRSPEDL-PS-DSELEQEDEQAPPRS 759 (968)
T ss_dssp HHTHHHHHHHHHHHHHHHTTTTTHHHHCHHCCHHHHHHHHHHHHHCHHHHHHC---S-----------------------
T ss_pred HHHHHHHHHHHHHHHHCcCCcchhhhHHHHHHHHHHHHHHHHHHccCCCcchhcccCcccc-cC-CCCCccccCCCCCCC
Confidence 9999999999999999998888877777775555555555544433111 0000000000 00 000000000000000
Q ss_pred cccccchhcccccCCCCCcccc---------cchhhhHHHHHHHHhhcCCCCCCCCCccccccccchhHhHHHHHHHHHH
Q psy15599 1573 DSVDSYVDYHTRMVGSSSLDHF---------TGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVGSSKE 1643 (2347)
Q Consensus 1573 ~~i~~~~~~~~~~~~~~~~~~~---------~g~~~~~~d~I~~~~~~l~~~~~~~~~~~~~~~~s~~~~qt~m~~~ak~ 1643 (2347)
.+-..... ..+|+-+++-+.+ .......++-|...-.+++.. ...+.+.-..++..||.
T Consensus 760 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~l~~e-----------~~kW~~~~Ndiv~~ak~ 827 (968)
T PF01044_consen 760 PSPEDTEP-PPRPPPPEETDREKMSRLPEEEKAKIAKQVQPIKEAASELDQE-----------VEKWDDQGNDIVALAKS 827 (968)
T ss_dssp ---------------TTS---S-----S-SSSTTCCCH-HHHHHHHHHHHHH-----------HTTB-STT-HHHHHHHH
T ss_pred CCchhhcc-CCCCCCCcccchHHHHhCCHHHHhChhhhhHHHHHHHHHHHHH-----------HHHhcCCCCHHHHHHHH
Confidence 00000000 0000000000000 000111122222222211110 01122233489999999
Q ss_pred HHHHhHHhhhhccc---CchhhhhhHHHHHHHHhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhcc--
Q psy15599 1644 IARISQEMMTKSWS---DVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACINTVTMAATCQ-- 1718 (2347)
Q Consensus 1644 ia~~~~~~~~~a~~---~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~~-- 1718 (2347)
++..+-.|.--+++ ...+|-+.++.|++.-..+..-++.-+..|+|...+..|+.....+..-|.||...++...
T Consensus 828 Ma~~m~~m~~f~rg~g~~~~dli~~Ak~ia~~~~~~~~~ar~ia~~c~d~~~k~~Ll~~~~~i~~~~~QL~i~s~VKa~~ 907 (968)
T PF01044_consen 828 MASMMMEMSQFTRGEGKTKKDLITAAKKIAEEGNKLTKLAREIADQCPDKRLKEDLLAYLERIPTICQQLKIISTVKADV 907 (968)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSBHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHCcchhHHHHHHhHeeecHHh
Confidence 99999999887764 6889999999999999999999999999999999999999999999999999986432221
Q ss_pred -CCC------ChhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy15599 1719 -TSG------DDYTHREFADTNRVLAEKVSQVLYALQAG 1750 (2347)
Q Consensus 1719 -~~~------d~~t~~~l~~~ar~v~e~v~~l~aal~~g 1750 (2347)
+.. |...-.-|..++|++-.+|.+++.+-...
T Consensus 908 ~~~~~~~~~~~~~~~~~li~~aknLm~~V~~~v~~~~~a 946 (968)
T PF01044_consen 908 QGSSGELSVSDLESAESLIQNAKNLMNAVVETVKAAEAA 946 (968)
T ss_dssp TTTTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22345678999999999999888876443
No 20
>KOG0248|consensus
Probab=99.65 E-value=1.3e-16 Score=196.16 Aligned_cols=208 Identities=22% Similarity=0.428 Sum_probs=170.5
Q ss_pred eEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCc-cccccccch
Q psy15599 196 PVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPF-LDLKEFLPQ 274 (2347)
Q Consensus 196 ~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~-l~l~~~lP~ 274 (2347)
.+++|++||+..... .+|+..+-|||.|.-+.|+.|++|.+.+-+.++|||..|+.|||-...-....| +-+.+|.|.
T Consensus 675 ~l~~~~r~y~~~~~~-~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~~k~q~l~qv~~rFyP~ 753 (936)
T KOG0248|consen 675 ALSLRMRHYWGHLAL-TETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQSLSDQQFEFISQRFYPS 753 (936)
T ss_pred HHHHHHHHHHHHhhc-CCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhChh
Confidence 467778888765544 478999999999999999999999999999999999999999987632221111 136899999
Q ss_pred hhhh---hhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCc
Q psy15599 275 SYVK---VKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERT 351 (2347)
Q Consensus 275 ~~lk---~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~t 351 (2347)
.|.. .+.++.+|...|..|+|+|+.|+.+-||..+|+||+||..+|..+.-..-.....=+||+||.+||.++|.++
T Consensus 754 ryrdga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~ 833 (936)
T KOG0248|consen 754 KMLDVACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNH 833 (936)
T ss_pred hhhccCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccc
Confidence 9875 3578899999999999999999999999999999999999999875311111223489999999999999999
Q ss_pred cceeeeeeccccceeeeeCceEEEEeCCCc----C------cEEEEechHHHHHHHHHHHHHH
Q psy15599 352 KEIMKTWPLTTVRRWGASSNVFTLDFGDYS----D------NYYSVQTTEAEQIQQLIAGYID 404 (2347)
Q Consensus 352 kevl~~~~~~~I~~w~~~~~~f~I~~~d~~----~------~~f~~~T~q~k~I~~LI~gYi~ 404 (2347)
-.++.+|||+.+..|+-...-|++.+.+.. + -.|.+--+...+|--+|+.||+
T Consensus 834 M~vi~tYpYsSl~TFGG~qDDFMlVI~~tp~K~~~~~~~EKL~F~MAkPKI~E~Tl~~ASYiN 896 (936)
T KOG0248|consen 834 MDVIRTYPYSSLSTFGGFQDDFMLVIIRTPGKHPDEAPKEKLTFSMAKPKIEELTLHLASYIN 896 (936)
T ss_pred eeEEEEeeccccccccCcccceEEEEecCCCCCCCccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 999999999999999988888888774321 1 1566666778899999999998
No 21
>KOG4371|consensus
Probab=99.47 E-value=8.1e-14 Score=178.47 Aligned_cols=300 Identities=17% Similarity=0.226 Sum_probs=222.8
Q ss_pred cceeEEEEeCCCcEEEEEEc--------CCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhh
Q psy15599 86 KMRTLKVRMLDGTLKTLLVD--------DSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEE 157 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd--------~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~ 157 (2347)
+.+.+.+++.|.......++ .-....+|+...|.-+.|.+.-+|||-+..+.
T Consensus 498 ~rriv~~~~~d~es~~h~in~~v~s~Ch~lvvs~dv~~~pi~~~~iss~~~fGlS~~~dn-------------------- 557 (1332)
T KOG4371|consen 498 KRRIVLHRVEDTESVVHLINQKVESACHSLVVSRDVFSLPIQNMNISSHVFFGLSFLRDN-------------------- 557 (1332)
T ss_pred ceeeeeeecCCchhHHhhhcchhccceeeEEEcccccCCcccceecccceEeeceeecCC--------------------
Confidence 35556666666543322222 11122444445567777777777877655442
Q ss_pred hhhhHHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhh---HHHHHHHhHhhhccCCC
Q psy15599 158 KERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQ---LNLLYVQARDAVLDGTH 234 (2347)
Q Consensus 158 ~~~~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~---l~lLY~Qar~dIL~G~~ 234 (2347)
++.|..+.++|.+.....|-. ..+.++.++..+.||++||.+..... .+.+. .+.+|.|++.+++...+
T Consensus 558 ---eh~~~e~~drLls~sasewk~----~As~~~~PP~~~h~rv~~y~s~l~~i-s~~~akltrse~Y~~~q~qvLeeq~ 629 (1332)
T KOG4371|consen 558 ---EHYFIEDHDRLLSFSASEWKS----VASVGVKPPYVLHLRVKFYPSILDFI-STDVAKLTRSELYLQCQRQVLEEQI 629 (1332)
T ss_pred ---cchhhcchHHHHhcCchhhHH----HhhcccCCCeEEEEEEEeccccCcch-hhhhhhhhhhHHHHhhhHHHHhhcc
Confidence 223333444444555667743 33445678899999999998776664 33444 89999999999999999
Q ss_pred cCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhh--h-HHHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q psy15599 235 PVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVK--G-IEKKIFSEHKNHVGLSELDAKVLYTKTCRS 311 (2347)
Q Consensus 235 p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k--~-~~~~I~~~hk~l~glS~~eAk~~YL~~~rs 311 (2347)
.-.++-+.++|++.+|.++|+.+.+.+..+|++..+|+|.+|...+ . +.+++-..|....+.+..+++++||++++.
T Consensus 630 V~~~da~f~laaFalqadsGNr~~n~~~gdysdP~hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r 709 (1332)
T KOG4371|consen 630 VPKRDAAFELAAFALQADSGNRPPNPVIGDYSDPQHYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQR 709 (1332)
T ss_pred cccchhhhhHHhhhhhhhcCCCCCCccccccCChhhhcccceecccchhhhhhccccccCchhhcchhhccCcceecccC
Confidence 9999999999999999999999999999999999999999987543 2 344555788888899999999999999999
Q ss_pred CCCCCcEEEEEEEccC------CCCcceeEEEEecCCceEEEeCC--ccceeeeeeccccceeeeeCceEEEEeCCCcCc
Q psy15599 312 LPTYGVTFFLVKEKMK------GKNKLVPRLLGVTKDSVLRLDER--TKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDN 383 (2347)
Q Consensus 312 lp~YG~t~F~Vk~k~~------g~~~~~~vlLGI~~~GI~ild~~--tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~~ 383 (2347)
.|.|+.+|+.+..... ......+.|+|+.++||.++.+. .++++..|||..|....+.++.|.|.-....+.
T Consensus 710 ~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~~lqFd~k~f~Is~~g~p~~ 789 (1332)
T KOG4371|consen 710 HPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQTLQFDKKRFVISAVGAPDE 789 (1332)
T ss_pred CCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCCCCCCceeecCCCceeecCCCCCc
Confidence 9999999999853200 01223468999999999999764 678999999999999999999999988654432
Q ss_pred ----EEEEechHHHHHHHHHHHHHHHHHhhhccc
Q psy15599 384 ----YYSVQTTEAEQIQQLIAGYIDIILKKKMSK 413 (2347)
Q Consensus 384 ----~f~~~T~q~k~I~~LI~gYi~l~lk~rr~k 413 (2347)
+|+-...+.....+++..-+.+||++++++
T Consensus 790 ~i~~~yt~hh~~S~~~L~~~~~thR~ym~~~q~~ 823 (1332)
T KOG4371|consen 790 QIETFYTDHHSKSSYFLRFAASTHRWYMKMRQWK 823 (1332)
T ss_pred ceEEeeccCCcchhHHHHHHHHhhHHHhhchhhh
Confidence 344444567888899999999999887544
No 22
>KOG3531|consensus
Probab=99.45 E-value=2.1e-14 Score=180.92 Aligned_cols=271 Identities=19% Similarity=0.284 Sum_probs=223.2
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHH
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKME 165 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~ 165 (2347)
++-.++|.++|.+...+.|......+-++++||++|+|-+.+||||-+.+..
T Consensus 38 k~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e~dyfglef~~~~---------------------------- 89 (1036)
T KOG3531|consen 38 KICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVECDYFGLEFQDIN---------------------------- 89 (1036)
T ss_pred ceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceeeccccceeecccc----------------------------
Confidence 3456889999999999999999999999999999999999999999777542
Q ss_pred HHHhhhccCccccccccchhhhhcCCCC-CceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHH
Q psy15599 166 QLRKKLKTDDEVNWIDFSKTLREQGIDE-NEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQL 244 (2347)
Q Consensus 166 ~Lk~~l~~~~~~~WLd~~ktL~eQgv~e-~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~L 244 (2347)
.+..|||+.+++..|.... ...++|-.|||..++--+ ..+.+..++-.|.+.|+..|+..|..-.+..|
T Consensus 90 ---------~~~~wld~~kpi~rqi~~~~~~~~~~~vkf~~p~~~~l-~ee~trylf~~q~k~dl~~G~l~c~d~ta~lL 159 (1036)
T KOG3531|consen 90 ---------GNHCWLDLEKPILRQIRRPKDVVLRFVVKFFPPDPIQL-QEEYTRYLFALQIKRDLALGRLTCNDTTAALL 159 (1036)
T ss_pred ---------CceEEecccchHHHHhcCccchhhheeecccCCCcccc-chhHHHHhhhhccccccccCCccCCCchhhhh
Confidence 1248999999998876443 567888899997665543 55666777888999999999999999999999
Q ss_pred HhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEEEE
Q psy15599 245 AGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKE 324 (2347)
Q Consensus 245 AALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~Vk~ 324 (2347)
.++..|.+.||+. .-.+..++....|+|.. ..++++|.+.|+++.|+++.+.-++-+++++++..||..+...++
T Consensus 160 ss~~~qse~gdf~-~~~d~~~l~~~~~~p~q----~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D 234 (1036)
T KOG3531|consen 160 SSHIVQSEIGDFD-EYLDREHLAHTRYLPNQ----DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKD 234 (1036)
T ss_pred hcccccccCCchh-ccccceeeeeeecCchH----HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhh
Confidence 9999999999993 33344567788999976 356889999999999999999999999999999999999999987
Q ss_pred ccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCcCc------EEEEech-HHHHHHH
Q psy15599 325 KMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDN------YYSVQTT-EAEQIQQ 397 (2347)
Q Consensus 325 k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~~------~f~~~T~-q~k~I~~ 397 (2347)
. .|. ++-|.|...||.++..-+|.. +|.|..|++..+..+.|-|...+...+ .|.+.+. .|+..|.
T Consensus 235 ~-Eg~----~~~lav~hmgi~Vfr~~tkin--Tf~wAkirklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk 307 (1036)
T KOG3531|consen 235 R-EGT----KINLAVAHMGILVFRGLTKIN--TFNWAKIRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWK 307 (1036)
T ss_pred c-ccc----hHHHHHHhhhhHHHhcceecc--CCCHHHHHHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHh
Confidence 5 332 345777888888888766644 899999999999999888888554333 4555555 4889999
Q ss_pred HHHHHHHHH
Q psy15599 398 LIAGYIDII 406 (2347)
Q Consensus 398 LI~gYi~l~ 406 (2347)
.|..|+.++
T Consensus 308 ~cve~h~ff 316 (1036)
T KOG3531|consen 308 ICVEHHAFF 316 (1036)
T ss_pred ccccccchh
Confidence 998888654
No 23
>KOG3681|consensus
Probab=99.44 E-value=1.5e-09 Score=139.47 Aligned_cols=385 Identities=13% Similarity=0.167 Sum_probs=280.3
Q ss_pred HHHHHhHHHHHHHHHHHhhccc----cchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhhHHHHHHHHHHHHHHH
Q psy15599 648 LLNAATRVGEASHHVLTEIGES----QTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATS 723 (2347)
Q Consensus 648 ll~AA~~l~~a~~~Ll~~i~e~----~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~~~~q~~li~aA~~~a~ats 723 (2347)
+..++.++...+.+|.+.+... +.+.|.+...- ...|...++. ...+.+-.-+...-..+.
T Consensus 347 l~~ai~~l~kkl~dLrrqLr~a~~d~iSd~fldt~tp--------llll~eaa~~-------G~ee~~~eya~~f~eha~ 411 (835)
T KOG3681|consen 347 LELAIDQLTKKLKDLKRQLRKAATDHVSDSFLDTTTP--------LLLLIEAAKA-------GNEEEVKEYAANFREHAN 411 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHhc-------CchhHHHHHHHHHHHHHH
Confidence 4447788888888887765444 22233331111 1111222222 234578888889999999
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch---HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy15599 724 QLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENL---NKDLTKAAAEVTKTLNQLLNHIKVTTTE 800 (2347)
Q Consensus 724 ~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~---~eqL~~Aa~~V~~al~~Ll~~~k~~~~~ 800 (2347)
+||.+++.+.....|..--+.+..+|.++...++|++.++...+..|.+ +|++..-.++|.+.+..|-..++.+++.
T Consensus 412 ~lvevarl~~~is~n~~~v~~v~~sa~ql~~L~Pqvi~Aa~~l~~~P~sk~A~enme~~k~~w~~~V~~lt~avd~~t~~ 491 (835)
T KOG3681|consen 412 KLVEVARLACSISNNEEGVKIVQHSAAQLESLCPQVINAARILAARPGSKAAQENMETYKNQWEDQVRVLTTAVDDITDI 491 (835)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHhcchHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 9999999998877888889999999999999999999999998888865 7999999999999999999999987753
Q ss_pred CCcchHHHHHHHHhhHHHHHH----------hcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Q psy15599 801 PAQDVETAVEVMMSSSDRLLA----------ASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNL 870 (2347)
Q Consensus 801 ~~~~~~~~~~~il~at~~L~~----------~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~L 870 (2347)
++|+..++.... .-.+++.+++.|+.+...+++.+..++++.++-++|++.+++..+.+.|
T Consensus 492 ---------~dfl~vSE~hi~ed~~kc~~ai~~~~~~~l~~~a~~i~~ra~rv~~v~~aE~dn~e~~~yte~v~~a~~~l 562 (835)
T KOG3681|consen 492 ---------DDFLAVSEEHILEDVNKCGVAIQSIDPQMLDRTAGAIRGRANRVLHVVKAEMDNYEPPVYTERVKEAVDVL 562 (835)
T ss_pred ---------hhHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhhhhhhhhHHHHHHHHHHhccCCchhhHHHHHHHHHH
Confidence 345555555432 3367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHHHHHhhcchHHHHHhhhhccccccccCCcchHHHHHHHHHHHHH
Q psy15599 871 AEATARMVEAARQCASHPQDIM-----KQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIEST 945 (2347)
Q Consensus 871 a~ats~LV~aaK~~a~~p~d~~-----~q~~L~~AAe~L~~At~~~i~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~a 945 (2347)
-.....++...+..+.+..|+. .-.++.++.+.+.++.. ....|+| +-..|.+..+
T Consensus 563 ~~~v~~~~~d~~~~a~e~~d~~~~~~~~~n~~i~a~~~V~d~i~--------------~~~~~~~-----~~~~E~l~~~ 623 (835)
T KOG3681|consen 563 SETVMPQFGDAVSVAVEILDPDKAFRGEENRFLDASRLVYDAIR--------------RTPEDLP-----DPDLEALELA 623 (835)
T ss_pred HhccchhHHHHHHHHHHhcCchhcccchhhHHhhhhHHHHhccc--------------CCCCCCC-----hHhHhhhhcc
Confidence 9999999998888887777764 33456777777777622 0111111 1111111111
Q ss_pred h-------hhhccCCCCCCCCchhHHHHHHHHHHHHHHHH--------HHHHHhhcC----------------C----CC
Q psy15599 946 Y-------EQIHTDDFPRSTKPIGRLQQELSSAATGLSET--------TNEVISSVK----------------N----PA 990 (2347)
Q Consensus 946 ~-------~~l~~~~~p~~~~~~~~~q~~L~~aA~~L~~a--------~~~lv~~~~----------------~----~~ 990 (2347)
- .+..+.. |. +-+...-..+..++..|... -|+++..+| + ..
T Consensus 624 ~~~~t~~~~~~~m~~-~~--ekia~~~~~~~~~~s~ld~Ev~KWdd~~~NDII~~AK~M~~im~~Mt~FTRG~GPlKtt~ 700 (835)
T KOG3681|consen 624 RSKPTPETDREKMRK-PQ--EKIAKQGLPFKLLTSKLDAEVEKWDDKSGNDIIALAKNMCSIMYEMTDFTRGDGPLKTTS 700 (835)
T ss_pred ccCCCchhhhhhccC-CH--hhHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 1 0000111 11 11122224445555555443 255555443 3 45
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh--hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy15599 991 NLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVS--TSSSKFLSTARSAALDPSASNSKSQLSAAARNVA 1068 (2347)
Q Consensus 991 ~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~--~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~ 1068 (2347)
+|+.++|.|+++-.++...+++++.+|+|+..+..|+.+|++|- -..+++++.+|+..-+.+..- -|=+.+++++
T Consensus 701 DlI~aAk~iAeag~~m~rlareia~qcpDs~~k~dLLa~lerIpl~c~QLqI~Skvka~~~~~~~~~---slIq~tknlm 777 (835)
T KOG3681|consen 701 DLISAAKKIAEAGSRMTRLAREIAKQCPDSAIKTDLLAYLERIPLYCHQLQICSKVKATVKNLGGEL---SLIQATKNLM 777 (835)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHH
Confidence 89999999999999999999999999999999999999999994 567888888888665544433 6779999999
Q ss_pred HHHHHHHHHHhhc
Q psy15599 1069 DSINNLLNICTSA 1081 (2347)
Q Consensus 1069 ~sin~Lv~a~~~a 1081 (2347)
..+-+++++|..+
T Consensus 778 n~vvqtvk~syv~ 790 (835)
T KOG3681|consen 778 NEVVQTVKASYVA 790 (835)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 24
>KOG4257|consensus
Probab=99.39 E-value=8.2e-13 Score=163.08 Aligned_cols=288 Identities=16% Similarity=0.218 Sum_probs=208.9
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC--CcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHHH
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNH--DEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQ 166 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~--e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~ 166 (2347)
..+|++|+|..+.|.+|..+|+..|+..+...+|+... ..|++-....-.+. . .|.
T Consensus 4 L~rv~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~~~~~~~~~acr~~t~i~~~---~-~~~------------------ 61 (974)
T KOG4257|consen 4 LARVFLPGGASKAVRYDVQTTIERVIHVVARGIGISQVAVAHFACRLVTGISPQ---T-AGS------------------ 61 (974)
T ss_pred ccccccCCCcceeeeecchhheeeeeeeeeeccCCCchhhhheeeeeccccchh---h-hhh------------------
Confidence 46799999999999999999999999999999999732 44554443321110 0 000
Q ss_pred HHhhhccCccccccccchhhh----------hcCCCCCceEEEEEEeecCCCC-CCCCChhhHHHHHHHhHhhhccCC-C
Q psy15599 167 LRKKLKTDDEVNWIDFSKTLR----------EQGIDENEPVLLRRKFFFSDGN-IDSHDPVQLNLLYVQARDAVLDGT-H 234 (2347)
Q Consensus 167 Lk~~l~~~~~~~WLd~~ktL~----------eQgv~e~~~L~LRrKff~~d~~-~~~~D~v~l~lLY~Qar~dIL~G~-~ 234 (2347)
....|+.+-.+.. ..++...|++-||.||.+.+.- ...+|..++.+||.|+++|+..-. .
T Consensus 62 --------~~S~~~~~~l~~i~lp~cy~~~lp~~~s~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~ 133 (974)
T KOG4257|consen 62 --------GDSLWLHPMLRIIQLPHCYARHLPIGVSDEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAW 133 (974)
T ss_pred --------ccccccchhhhhccccccccccCCCCcchhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHh
Confidence 0112322111100 1234468999999999976533 234788999999999999999854 5
Q ss_pred cCCHHHHHHHHhHHHhhhcCCCCCCC----CCCCcc----ccccccchhhh---hhhhHHHHHHHHHHhccCCCHHHHHH
Q psy15599 235 PVTQDLACQLAGIQTHIQFGDYNPSK----HKPPFL----DLKEFLPQSYV---KVKGIEKKIFSEHKNHVGLSELDAKV 303 (2347)
Q Consensus 235 p~see~ai~LAALqlQie~GD~~~~k----~~~~~l----~l~~~lP~~~l---k~k~~~~~I~~~hk~l~glS~~eAk~ 303 (2347)
.++.+.|++||+|-+...|.++.... +--+++ .++.|||+.+. |.|.+++.|...|+++.+++++|.-.
T Consensus 134 ~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~lekevglksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~ 213 (974)
T KOG4257|consen 134 RSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDLEKEVGLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESII 213 (974)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHHHHHhhHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHH
Confidence 68899999999999999998766433 111122 36899999986 57899999999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCC-ceEEEeCCccceeeeeeccccceeeeeC-------ceEEE
Q psy15599 304 LYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKD-SVLRLDERTKEIMKTWPLTTVRRWGASS-------NVFTL 375 (2347)
Q Consensus 304 ~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~-GI~ild~~tkevl~~~~~~~I~~w~~~~-------~~f~I 375 (2347)
+|+.+....-.|..+.|.|..- .| +.+++.|.|+++ ||..+......+.....|.+|.++.... ..+.|
T Consensus 214 rff~lL~~v~~~d~E~fk~~L~-s~--WnisveLvvGPh~Gisy~t~~~~~~t~laefkqi~sI~~c~~~eek~k~~lQl 290 (974)
T KOG4257|consen 214 RFFALLLEVYKFDVELFKCSLG-SG--WNISVELVVGPHTGISYLTNERCDPTRLAEFKQIASITICKMEEEKEKTLLQL 290 (974)
T ss_pred HHHHHHHHHHhhhHHheeeecc-cc--cceeEEEEecCcccceeccCCCCChHHHHhhhhhheeEEeecccccccceeee
Confidence 9999999999999999999863 44 456788888888 9988766555555567788888887321 23445
Q ss_pred EeCCCcC-cEEEEech-HHHHHHHHHHHHHHHHHhh
Q psy15599 376 DFGDYSD-NYYSVQTT-EAEQIQQLIAGYIDIILKK 409 (2347)
Q Consensus 376 ~~~d~~~-~~f~~~T~-q~k~I~~LI~gYi~l~lk~ 409 (2347)
.+.+... ..+.+.+- .++.|..||.||..++-++
T Consensus 291 kisga~e~l~It~ssl~~aesmAdLiDGYcrL~n~~ 326 (974)
T KOG4257|consen 291 KISGAPEPLLITLSSLELAESMADLIDGYCRLYNQR 326 (974)
T ss_pred eccCCCCCeEEecChhhHHHHHHHHHHHHHHHHcCC
Confidence 5543332 24444443 4899999999999998643
No 25
>KOG3784|consensus
Probab=99.34 E-value=1.6e-11 Score=146.91 Aligned_cols=239 Identities=21% Similarity=0.291 Sum_probs=160.5
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC--CcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHH
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNH--DEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKME 165 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~--e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~ 165 (2347)
-.+.|.+|||...++.+..+.|...++..+|.++|+... .+||||....... |.+++.|+..
T Consensus 108 v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~~~-------~~ls~vRkl~--------- 171 (407)
T KOG3784|consen 108 VELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVRDNDP-------GNLSFVRKLA--------- 171 (407)
T ss_pred eEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEeccCC-------Ccceeeeeec---------
Confidence 468899999999999999999999999999999999864 8999999876433 2232222110
Q ss_pred HHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCC-CCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHH
Q psy15599 166 QLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGN-IDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQL 244 (2347)
Q Consensus 166 ~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~-~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~L 244 (2347)
.+..|...+....+ ....|.||+-||-+..+ .+..+.+.++|+|.|+..||-.|+...+.++.-+|
T Consensus 172 ------------~fE~p~vs~t~~~~-~~~~l~LRk~~~ds~~e~~L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL 238 (407)
T KOG3784|consen 172 ------------DFESPYVSLTSNYV-SACELLLRKWYWDSSRERALMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQL 238 (407)
T ss_pred ------------cccccccccccccc-ccccceeeeeeecchhhhHHhcCchHHHHHHHHHHHHHhcCceeechhhHHHH
Confidence 01111111111111 13348899888844333 33467778999999999999999987666544455
Q ss_pred HhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEE--
Q psy15599 245 AGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLV-- 322 (2347)
Q Consensus 245 AALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~V-- 322 (2347)
=+||-| +-+.+||+++|++++||...|+-
T Consensus 239 ~slq~q-------------------------------------------------~~~~~fL~m~R~l~~Y~~l~f~~c~ 269 (407)
T KOG3784|consen 239 KSLQEE-------------------------------------------------ESMKEFLELARTLEGYGYLIFDPCV 269 (407)
T ss_pred HHHHHh-------------------------------------------------hhHHHHHHHHHhhccCCeEecCccc
Confidence 555444 34678999999999999999983
Q ss_pred -EEccCCCCcceeEEEEecCCceEEEeCCc-cceeeeeeccccceeeeeCceEEEEe-------CCCcCcEEEEechHHH
Q psy15599 323 -KEKMKGKNKLVPRLLGVTKDSVLRLDERT-KEIMKTWPLTTVRRWGASSNVFTLDF-------GDYSDNYYSVQTTEAE 393 (2347)
Q Consensus 323 -k~k~~g~~~~~~vlLGI~~~GI~ild~~t-kevl~~~~~~~I~~w~~~~~~f~I~~-------~d~~~~~f~~~T~q~k 393 (2347)
.++.+|. +..+.+| +.+=++-+...+ ......|+|++|++|.++...+.+-| +|....++.+.|+++.
T Consensus 270 CD~p~kg~--~~~~~~g-~~~ll~~~teegq~~q~i~F~~trmr~Wrvte~~la~~FEy~~~~~~d~k~rWv~I~T~qa~ 346 (407)
T KOG3784|consen 270 CDYPEKGT--PAVISVG-NHELLLACTEEGQQNQEIAFRWTRMRCWRVTEEGLAFSFEYLRDEVKDKKLRWVTIFTPQAI 346 (407)
T ss_pred cCCCCCCC--eEEEEEc-chhheeeeccCCCccceeEEEeeeeEeeeccHHHHHHHHHHHHhhccccceeEEEEcCcHHH
Confidence 2322332 2222333 333344443333 23345799999999999874333322 4434458999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy15599 394 QIQQLIAGYIDIIL 407 (2347)
Q Consensus 394 ~I~~LI~gYi~l~l 407 (2347)
.++.++...+.-.+
T Consensus 347 lMs~Clq~m~~El~ 360 (407)
T KOG3784|consen 347 LMSECLQSMVSELL 360 (407)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999985444
No 26
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=99.14 E-value=7.5e-11 Score=116.70 Aligned_cols=77 Identities=31% Similarity=0.563 Sum_probs=67.0
Q ss_pred EEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE-ecCCcccccCCCCcccchhchhhhhhhhHHHHHHHhh
Q psy15599 92 VRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR-ENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQLRKK 170 (2347)
Q Consensus 92 V~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~-~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~Lk~~ 170 (2347)
|+||||+.+++.|+.++|+.++++.||.+|||.+.++|||++ ...+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~--------------------------------- 47 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKD--------------------------------- 47 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTT---------------------------------
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCC---------------------------------
Confidence 799999999999999999999999999999999999999999 3221
Q ss_pred hccCccccccccchhhhhcCCC--CCceEEEEEEeec
Q psy15599 171 LKTDDEVNWIDFSKTLREQGID--ENEPVLLRRKFFF 205 (2347)
Q Consensus 171 l~~~~~~~WLd~~ktL~eQgv~--e~~~L~LRrKff~ 205 (2347)
+...||++++++.+|... +++.|+||+||||
T Consensus 48 ----~~~~wL~~~k~l~~q~~~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 48 ----GEHHWLDLDKKLKKQLKKNNPPFTLYFRVKFYP 80 (80)
T ss_dssp ----SSEEEE-SSSBGGGSTBTSSSSEEEEEEESS--
T ss_pred ----CcceeccCcccHHHHcCCCCCCEEEEEEEEECC
Confidence 234999999999999877 7899999999996
No 27
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=99.03 E-value=2.1e-09 Score=121.65 Aligned_cols=128 Identities=29% Similarity=0.338 Sum_probs=100.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCC---------------CChHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy15599 705 PNQQTSVITSATKCALATSQLVACTKVVAPTL---------------ENPACQQQLMAAVKEVANAVEGLVAMCNETCTD 769 (2347)
Q Consensus 705 ~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti---------------~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~ 769 (2347)
.++++.|+.+|+.++.++..||.+|+.++.+| .|+.|.|+||+|++.|+.+++.||.+++.+..+
T Consensus 4 l~v~e~IL~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~~~~~~~fY~kn~~w~EgLisAAkaV~~a~~~Lv~aA~~~~~g 83 (200)
T smart00307 4 LEVDESILEAAKAITKAIAALVKAATNAQREIVAQGRGGASPGEFYKKNSRWTEGLISAAKAVAAATNVLVEAADGVVTG 83 (200)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45778999999999999999999988774333 266799999999999999999999998887766
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhh
Q psy15599 770 ENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKG 849 (2347)
Q Consensus 770 ~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~ 849 (2347)
....|.|+.++++|+.++.+|+.+++-
T Consensus 84 ~~~~E~LI~aAk~VAasTaQLVaAsrv----------------------------------------------------- 110 (200)
T smart00307 84 KGSEEELIVAAKEVAASTAQLVAASRV----------------------------------------------------- 110 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------------------------------
Confidence 555667777777777776666665551
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15599 850 DAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASH 887 (2347)
Q Consensus 850 ~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~ 887 (2347)
.+ ..|+..+++|..+++.|+++|++||+++|.+...
T Consensus 111 ka--~~~S~~~~~L~~Ask~V~~At~~LVaaak~~~~~ 146 (200)
T smart00307 111 KA--DKDSQAQDRLQAASKAVTNATANLVAAVKSGMIF 146 (200)
T ss_pred cc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1244568899999999999999999999998754
No 28
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.86 E-value=9.9e-09 Score=104.48 Aligned_cols=86 Identities=29% Similarity=0.399 Sum_probs=73.8
Q ss_pred CCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCC--cCcEEEEech-
Q psy15599 314 TYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDY--SDNYYSVQTT- 390 (2347)
Q Consensus 314 ~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~--~~~~f~~~T~- 390 (2347)
+||+++|.|+++ + ..+++|||++.||.+++... .+..|||++|+++.++++.|.|++.+. .+..+.|.++
T Consensus 1 ~YGv~~~~vkd~-~----g~~~~lGV~~~Gi~v~~~~~--~~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f~~~s 73 (92)
T cd00836 1 MYGVDLHPVKDK-K----GTELLLGVTAEGILVYDDGT--PINEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSFQTPS 73 (92)
T ss_pred CCCeeeEEEECC-C----CCeEEEEEeCCCcEEecCCC--EEEEEEcccceEEEEcCCEEEEEEecCcCceeeEEEECCC
Confidence 699999999975 3 35899999999999999775 678999999999999999999999876 3345566554
Q ss_pred --HHHHHHHHHHHHHHHH
Q psy15599 391 --EAEQIQQLIAGYIDII 406 (2347)
Q Consensus 391 --q~k~I~~LI~gYi~l~ 406 (2347)
.|+.|+.+|.+||.++
T Consensus 74 ~~~~k~lwk~~ve~H~Ff 91 (92)
T cd00836 74 HRACKYLWKLCVEQHAFF 91 (92)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 5899999999999886
No 29
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=98.56 E-value=2.3e-07 Score=100.77 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 738 NPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHI 794 (2347)
Q Consensus 738 ~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~ 794 (2347)
|+.|.|+||+|||.|+.+|+.||.+++.+..+...+|+|+.++++|+.++.+|+.+|
T Consensus 5 n~~WteGLISAAKaVa~at~~LveaA~~vv~g~~~~E~LIvaa~eVAasTAQLv~As 61 (152)
T PF01608_consen 5 NSRWTEGLISAAKAVAAATNMLVEAADGVVQGTGSEEELIVAAKEVAASTAQLVAAS 61 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666665566666666666666666666665
No 30
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=98.11 E-value=1.5e-05 Score=80.88 Aligned_cols=79 Identities=13% Similarity=0.227 Sum_probs=64.5
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCC-CcCc--EEEEech-HHHHHHHHHHHHHHHHHh
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGD-YSDN--YYSVQTT-EAEQIQQLIAGYIDIILK 408 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d-~~~~--~f~~~T~-q~k~I~~LI~gYi~l~lk 408 (2347)
.+++|||++.||.+++.+.+..+..|+|.+|.++.++.+.|.|.+.+ .... .|.+.+. .++.|+.+|.+||.+++.
T Consensus 5 ~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H~Ff~~ 84 (90)
T PF09380_consen 5 SPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQHTFFRL 84 (90)
T ss_dssp BEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecccEEEEEEeecccceEEEEEECCHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999988766545799999999999999999999975 2222 4555544 489999999999999986
Q ss_pred hhc
Q psy15599 409 KKM 411 (2347)
Q Consensus 409 ~rr 411 (2347)
++.
T Consensus 85 ~~~ 87 (90)
T PF09380_consen 85 RRP 87 (90)
T ss_dssp HTS
T ss_pred cCC
Confidence 654
No 31
>KOG3681|consensus
Probab=97.74 E-value=0.45 Score=63.75 Aligned_cols=242 Identities=17% Similarity=0.161 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy15599 616 GDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLK 695 (2347)
Q Consensus 616 ~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~~~~e~~d~L~~~AkaVa~Ata~Lv~~ 695 (2347)
|+.+..+++.+.+ .|.+...|..+..+++.|-.+...||-+...... ..|+...+.|.+....|-.
T Consensus 85 ~~~m~~aa~~~~~---------Dp~s~~~R~~~i~aaR~LLsavtrlLllaD~~dV----~~ii~~~~~V~~~l~~le~- 150 (835)
T KOG3681|consen 85 GDLMKQAAREFDD---------DPCSVPKRGNLIRAARGLLSAVTRLLLLADMVDV----KKIIRSCKKVLETLEVLEN- 150 (835)
T ss_pred HHHHHHHHHHhcc---------CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHh-
Confidence 4445555554444 7889999999999999999999999987644422 4588888888888777332
Q ss_pred hhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHH
Q psy15599 696 AKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKD 775 (2347)
Q Consensus 696 ak~~~~~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eq 775 (2347)
+. ..+.|..-=++...-...|--.+-.-+....||.++.+|..|-..+...++-|+.+++.-+..|++...
T Consensus 151 ~~---------t~~dlv~~~k~lg~~m~~l~~~~~~RqqeLk~~~~rd~laaar~~lk~~~p~L~task~~lrhp~~~~a 221 (835)
T KOG3681|consen 151 VN---------TMQDLVQIFKQLGPEMVKLAHMAGKRQQELKDPKHRDQLAAARAVLKKLAPMLLTASKTCLRHPNCESA 221 (835)
T ss_pred hc---------cHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHHHHHHHHcCccHHHH
Confidence 21 123344333444433333333333345688899999999999999999999999999998888887544
Q ss_pred HHH---HHHHHHHHHHHHHHHhhhcCCCCCcch--HHHHHHHHhhHHHHHH-----hcCChhHHHHHHHHHHHHHHHHHH
Q psy15599 776 LTK---AAAEVTKTLNQLLNHIKVTTTEPAQDV--ETAVEVMMSSSDRLLA-----ASGDAPEMVRQARILGQATAQLIQ 845 (2347)
Q Consensus 776 L~~---Aa~~V~~al~~Ll~~~k~~~~~~~~~~--~~~~~~il~at~~L~~-----~~~~a~~mv~~Ak~va~a~~~Lv~ 845 (2347)
..+ -..++..+++.+...+.....+.+... .. ..+.+.+...... -+.++..+.+. .+..++...|.
T Consensus 222 ~~NRd~v~~~m~~aln~I~~v~q~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~~l~~~~~~~r~--~le~~le~Iis 298 (835)
T KOG3681|consen 222 KKNRDYVFDQMSDALNEIIRVLQLTSPDEDTSESSGS-AGKLASALIDFKKNIAIDPLTNPEARSRP--SLEVRLEQIIS 298 (835)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcchhccc-hhHHHHHHhHHHHHHHhhhhhchhhccCc--hHHHHHHHHHH
Confidence 332 345677788888877765543222111 11 3444444444322 11222221111 23334555555
Q ss_pred HHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 846 AIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQ 883 (2347)
Q Consensus 846 ~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~ 883 (2347)
.+-..++.+-...++++.++-+..+.++...+....+.
T Consensus 299 ~aa~~aDs~~~d~rreri~a~~~al~q~l~d~l~E~~~ 336 (835)
T KOG3681|consen 299 GAALMADSCCRDLRRERIVAECNALRQALQDLLSEYQS 336 (835)
T ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 55544444333444666666665555555555444443
No 32
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=97.40 E-value=0.0011 Score=68.79 Aligned_cols=76 Identities=28% Similarity=0.505 Sum_probs=68.3
Q ss_pred cceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCC---cCcEEEEechHHHHHHHHHHHHHHHH
Q psy15599 331 KLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDY---SDNYYSVQTTEAEQIQQLIAGYIDII 406 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~---~~~~f~~~T~q~k~I~~LI~gYi~l~ 406 (2347)
...+.+|.|+...|.+.++.++.++..|||..|++|+.+.+.|.++.|.. -.+.|.|.|.++.+|++.|..|+.-+
T Consensus 20 l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~~i~~~ 98 (100)
T PF02174_consen 20 LSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGIFSFEAGRRCPTGEGLFWFQTPDAEEIFETVERAIKAQ 98 (100)
T ss_dssp SEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTEEEEEESTTSTTCSEEEEEEESTHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCEEEEEECCcCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999999999999999999844 24699999999999999999998643
No 33
>KOG4371|consensus
Probab=97.39 E-value=9.6e-05 Score=97.39 Aligned_cols=156 Identities=9% Similarity=-0.003 Sum_probs=98.6
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHHH
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQ 166 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~ 166 (2347)
+-..-+++.+|......+.+.|.+.++.. +..+++.|||.+-..+ ++.|++
T Consensus 37 Q~~~l~~t~~~~S~~~e~s~~T~~hdv~~------~~~d~elfglA~~~r~-----------------------ey~f~d 87 (1332)
T KOG4371|consen 37 QDDALTSTSSGNSTQKESSPFTDFHDVPP------PPVDPELFGLAQNRRE-----------------------EYSFED 87 (1332)
T ss_pred CCceeEEeecCceeeeecccccccccCCC------CCCcccccchhhhhcc-----------------------cccccC
Confidence 33455666666666666666555555433 2256788888665421 111221
Q ss_pred HHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCC--cCCHHHHHHH
Q psy15599 167 LRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTH--PVTQDLACQL 244 (2347)
Q Consensus 167 Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~--p~see~ai~L 244 (2347)
.-.++.+.+...|--....-.+....+...|+||++||+...-. ..|+...+-+|+|++++++.-.. +.+++-+.++
T Consensus 88 p~~k~skyg~k~~r~s~~h~ld~~~rp~l~l~frv~~yi~~~~~-l~~~~~r~~yylql~~n~l~~~apr~~~e~a~~~~ 166 (1332)
T KOG4371|consen 88 PFLKESKYGGKGSRLSQSHRLDETFRPELSLEFRVSGYIRNNIS-LAASPGRKSYYLQLFTNTLAPVAPRPAPEKAAEEY 166 (1332)
T ss_pred hhhhhhhhcCCCCccccccccCccCCeeEEEEEEEEEeecCcee-ccCCCCccchhhhhhhhhhccccCCcchHHHHHHH
Confidence 11222334555664333222222334578899999999865444 47888899999999999999544 5778889999
Q ss_pred HhHHHhhhcCCCCCCCCCCCccccccccchhhh
Q psy15599 245 AGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYV 277 (2347)
Q Consensus 245 AALqlQie~GD~~~~k~~~~~l~l~~~lP~~~l 277 (2347)
|+|.+|..|||-.+ +++..++|.|.+..
T Consensus 167 a~lalq~d~g~~~~-----g~s~~~qy~g~~~~ 194 (1332)
T KOG4371|consen 167 ARLALQNDFGEEEE-----GESQFGQYGGTLSG 194 (1332)
T ss_pred HhhhhcCccCcCCc-----ccccccccCcceec
Confidence 99999999998643 44555666665544
No 34
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=97.22 E-value=0.0021 Score=63.44 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=48.4
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCC
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPE 137 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~ 137 (2347)
...|+||++||+.+++.|+...|++|++..++.+.++.....++||+..++
T Consensus 2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~ 52 (85)
T cd01787 2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPH 52 (85)
T ss_pred ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecch
Confidence 467999999999999999999999999999999999999999999999774
No 35
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.09 E-value=0.0042 Score=64.42 Aligned_cols=78 Identities=27% Similarity=0.416 Sum_probs=70.2
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHHHHHHHh
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGYIDIILK 408 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gYi~l~lk 408 (2347)
..+.+|-++++.|.+++.++...+..|||..|++|+.+++.|.++.|..- .+.|.|+|.++++|.+.|..+|.-.++
T Consensus 20 ~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i~~~~~ 99 (104)
T cd00824 20 LGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDSNLFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETILAAMK 99 (104)
T ss_pred ceeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCCCEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998899999999999999999999999998553 358999999999999999999988774
Q ss_pred h
Q psy15599 409 K 409 (2347)
Q Consensus 409 ~ 409 (2347)
.
T Consensus 100 ~ 100 (104)
T cd00824 100 A 100 (104)
T ss_pred h
Confidence 4
No 36
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=97.01 E-value=0.0011 Score=73.01 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=63.6
Q ss_pred hhhhhhcchhhHhhhhHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhcccc
Q psy15599 591 AITSISHTLPEMSKGVRMLAALTPSGDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQ 670 (2347)
Q Consensus 591 ~i~~i~s~~~~~~~~~k~la~l~~~~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~~ 670 (2347)
.++.+|++|+.+++|+.+++ ...|.|+. ++++ +..+..|++|++.|++||++|++.. +|.
T Consensus 79 d~tavgaAittIssnl~em~----------k~vr~laa--------L~d~-~~~~~~Ll~Aar~L~~A~sdll~sa-~p~ 138 (161)
T PF09141_consen 79 DYTAVGAAITTISSNLPEMA----------KGVRMLAA--------LMDD-EGDGDKLLDAARKLCGAFSDLLKSA-EPE 138 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHH--------HHHH-TT--HHHHHHHHHHHHHHHHHHHHT-STT
T ss_pred chhhHHHHHHHHHHhhHHHH----------HHHHHHHH--------hcCC-cccHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 46788999999999998843 33555544 1222 2257899999999999999999986 665
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q psy15599 671 TNEMQDTLLSLAKAVANTTAALV 693 (2347)
Q Consensus 671 ~~e~~d~L~~~AkaVa~Ata~Lv 693 (2347)
..++|+.|+++|..|++++.+|+
T Consensus 139 ~~e~Rq~ll~AA~~vg~as~~lL 161 (161)
T PF09141_consen 139 SKEPRQNLLEAASRVGEASGQLL 161 (161)
T ss_dssp T-SSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhccC
Confidence 67888999999999999999874
No 37
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=96.88 E-value=0.0058 Score=62.54 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=65.5
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHHHHH
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGYIDI 405 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gYi~l 405 (2347)
...+|-++++.|.+++.+++..+..|||..|++|+.+...|.++.|..- .+.|.|+|.++++|++.|..++.-
T Consensus 20 G~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~~a~~i~~~v~~a~~~ 95 (98)
T smart00310 20 GSYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDKNFFFFEAGRRCVSGPGEFTFQTVVAQEIFQLVLEAMQA 95 (98)
T ss_pred eeEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCCCEEEEEccCcCCCCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 4689999999999999888888899999999999999999999998553 358999999999999999888753
No 38
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=96.83 E-value=0.0038 Score=62.74 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=64.3
Q ss_pred HHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHH
Q psy15599 221 LYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELD 300 (2347)
Q Consensus 221 LY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~e 300 (2347)
.|..+...|..-....+.++-++|=||.-|+..||++.. .|+++++. .+.=.++|+++.|||+.+
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~--~P~~~d~~-------------~~~K~~AW~~l~~ms~~e 68 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTE--RPGMFDLK-------------GRAKWDAWNSLKGMSKED 68 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCC--CCCcccHh-------------hHHHHHHHHHcCCCCHHH
Confidence 577777777777778899999999999999999999742 34433321 122337999999999999
Q ss_pred HHHHHHHHhccC-CCCC
Q psy15599 301 AKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 301 Ak~~YL~~~rsl-p~YG 316 (2347)
||..||+++..+ |.||
T Consensus 69 A~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 69 AMKAYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 999999999875 8887
No 39
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=96.78 E-value=0.0048 Score=63.15 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=67.5
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGYIDII 406 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gYi~l~ 406 (2347)
..+.+|-|.++.|.+.|+.+.+++..|||.-+++|+.+.+.|+++-|..- .+.|.|.|.++++|.+++...|...
T Consensus 20 ~G~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~d~~~FsFEAGRrC~tGeG~f~F~t~~~~~if~~v~~~i~~q 97 (104)
T cd01203 20 PGSYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGRDKGKFSFEAGRRCTSGEGVFTFDTTQGNEIFRAVEAAIKSQ 97 (104)
T ss_pred ceeEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcccCCEEEEEecCcCCCCCcEEEEecCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999997542 3589999999999999999988754
No 40
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=96.73 E-value=0.0079 Score=60.93 Aligned_cols=89 Identities=22% Similarity=0.377 Sum_probs=71.2
Q ss_pred CCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechH
Q psy15599 315 YGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTE 391 (2347)
Q Consensus 315 YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q 391 (2347)
.-.+.|.|..-.++++.....+|-|++.-+++++++.+ + ..|||..+++++.+...|+++-|..- .+.|.|.|.+
T Consensus 3 ~~~~~F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~~-~-~~WPl~~LRRYG~d~~~FsFEAGRRC~tGeG~f~F~t~~ 80 (102)
T cd01202 3 GHSNSFRVINVDDDGNELGSGWLELTRTELTLYISGKE-P-VVWPLLCLRRYGYNSDLFSFESGRRCQTGEGIFAFRCKR 80 (102)
T ss_pred CCCcEEEEEEECCCCCeeeeEEEEecceEEEEEcCCCC-E-EEccHHHhHhhccCCCEEEEEccCcCCCCCCEEEEEcCC
Confidence 34556777533233455677899999999999987653 3 59999999999999999999997542 3589999999
Q ss_pred HHHHHHHHHHHHHH
Q psy15599 392 AEQIQQLIAGYIDI 405 (2347)
Q Consensus 392 ~k~I~~LI~gYi~l 405 (2347)
+++|.+++..||+-
T Consensus 81 ~~~if~~v~~~I~~ 94 (102)
T cd01202 81 AEELFNLLQSYIQE 94 (102)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999863
No 41
>KOG4335|consensus
Probab=96.51 E-value=0.00082 Score=83.86 Aligned_cols=170 Identities=20% Similarity=0.139 Sum_probs=123.7
Q ss_pred CCCceEEEEEEeecCC-CCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCcccccc
Q psy15599 192 DENEPVLLRRKFFFSD-GNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKE 270 (2347)
Q Consensus 192 ~e~~~L~LRrKff~~d-~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~ 270 (2347)
++...+.++|-.|+.- ......||..+.++|.-+|+.++.|.|......-+.+|.+.++.-++.+...||+..++.+++
T Consensus 323 ~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEe 402 (558)
T KOG4335|consen 323 SDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEE 402 (558)
T ss_pred CCccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHH
Confidence 3566788887766442 222347999999999999999999999988888888999999999999998899887766543
Q ss_pred c---cchhhhhh--hhHHHH-HHHHHHhc---cCCCHHHH--HHHHHHHhccCCCCCcEEEEEEEccCCC---CcceeEE
Q psy15599 271 F---LPQSYVKV--KGIEKK-IFSEHKNH---VGLSELDA--KVLYTKTCRSLPTYGVTFFLVKEKMKGK---NKLVPRL 336 (2347)
Q Consensus 271 ~---lP~~~lk~--k~~~~~-I~~~hk~l---~glS~~eA--k~~YL~~~rslp~YG~t~F~Vk~k~~g~---~~~~~vl 336 (2347)
| .|-.-.+. .-|... |...|++. .|.+.+.+ +..+|+.|..+|.||+++|.-.+..+|+ ...++..
T Consensus 403 lk~~~~t~~~~~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~ 482 (558)
T KOG4335|consen 403 LKSWDHTSPEEEEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPAP 482 (558)
T ss_pred hcccCCCCChhhcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCcccccccc
Confidence 3 22211111 235444 77777765 56766655 6689999999999999999876544442 1346778
Q ss_pred EEecCCceEEEeCCccceeeeeeccc
Q psy15599 337 LGVTKDSVLRLDERTKEIMKTWPLTT 362 (2347)
Q Consensus 337 LGI~~~GI~ild~~tkevl~~~~~~~ 362 (2347)
++|| +|+.++...++-+...+.+..
T Consensus 483 vqv~-k~l~~ls~q~~~~~ssikh~~ 507 (558)
T KOG4335|consen 483 VQVN-KGLPKLSRQGSVVSSSIKHLS 507 (558)
T ss_pred cccc-ccchhhccchhHHHHHhhhhh
Confidence 9999 899999887766654444433
No 42
>KOG0994|consensus
Probab=96.43 E-value=7.5 Score=53.89 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHhHHh---hhhcccCchhhhhhHHHH--------HHHHhhhhhHHhhhhhhCCChhhhhHHHHHHh
Q psy15599 1633 YHTRMVGSSKEIARISQEM---MTKSWSDVKSMSGLSSQL--------THQYSKLCTDCIGAVASASNPEVSGRLCGAVH 1701 (2347)
Q Consensus 1633 ~qt~m~~~ak~ia~~~~~~---~~~a~~~~~~l~~~~~~~--------s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~ 1701 (2347)
+-.+|-++-+++-.+++.+ .+.-.++|++|..++... .+.+..|..+-...++..+|.+ .|+..++
T Consensus 1462 s~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd---~IL~~T~ 1538 (1758)
T KOG0994|consen 1462 SRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVD---AILSRTK 1538 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHH---HHHHhhh
Confidence 4446666666665555555 456667788887776533 2334444444444444444433 2444444
Q ss_pred hHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhhhhhhcHHHHHHHHhcC
Q psy15599 1702 DLGTACINTVTMAATCQTSGDDYTHREFADTNRVLAEKVSQVLYALQAGSRGTQACINAASTVSGIIGDLDTTIMFATAG 1781 (2347)
Q Consensus 1702 ~l~~s~~~lv~aa~~~~~~~d~~t~~~l~~~ar~v~e~v~~l~aal~~g~~G~qac~~a~~~vsgii~dLd~ti~fA~ag 1781 (2347)
.=..=+-+|...|..+ ...|..+..++..|..+|+++-. |-..+.+.|.+.|+.|-.+-.
T Consensus 1539 ~di~ra~~L~s~A~~a------------~~~A~~v~~~ae~V~eaL~~Ad~-------Aq~~a~~ai~~a~~~~~~a~~- 1598 (1758)
T KOG0994|consen 1539 GDIARAENLQSEAERA------------RSRAEDVKGQAEDVVEALEEADV-------AQGEAQDAIQGADRDIRLAQQ- 1598 (1758)
T ss_pred hhHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHH-
Confidence 3333333444333332 13345566667778888866533 333444444444444332110
Q ss_pred CCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHH-HHH--HHHHHHHHHHHHhhhhcccCCCCHHHHH
Q psy15599 1782 TLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVA-AQN--AVSTIVQLAEVVKFGAASLGSNNPEAQV 1858 (2347)
Q Consensus 1782 ~l~~~~~~~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~a-a~~--~~~~~~~La~~~k~gAas~~~~~~~~q~ 1858 (2347)
.....++.+. .|+.++-.+.+-+..=.+.-|.|-+- +++ .+.++++.+..+|..|.+..
T Consensus 1599 ---------~l~kv~~~t~-~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~-------- 1660 (1758)
T KOG0994|consen 1599 ---------LLAKVQEETA-AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAE-------- 1660 (1758)
T ss_pred ---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--------
Confidence 0000111100 01111100000000000000111111 111 24455667777766664432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q psy15599 1859 LLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTI 1930 (2347)
Q Consensus 1859 ~l~~a~kdv~~a~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~tv~~v~~e~~rgt~ale~~~ 1930 (2347)
..++...+-.+....|+ +|.+.|+-..-.--+.|.+-|+.+.-...+.|+-++.+|-+--++-|+|+.-.
T Consensus 1661 q~~~~lq~~~~~~~~l~--~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~ 1730 (1758)
T KOG0994|consen 1661 QGLEILQKYYELVDRLL--EKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKA 1730 (1758)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 22223333344444443 46677774333334557777777777777778888877766667777766544
No 43
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=96.31 E-value=0.0058 Score=60.47 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=44.8
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC--CcceeEEecC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNH--DEYSLVRENP 136 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~--e~FsL~~~~~ 136 (2347)
.++|.||||+..++.|..+.++.++++.+|.+|||+.. .||+||...+
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~ 52 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVIN 52 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEec
Confidence 58899999999999999999999999999999999864 8999999854
No 44
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=96.07 E-value=0.019 Score=58.36 Aligned_cols=45 Identities=29% Similarity=0.452 Sum_probs=42.6
Q ss_pred eeEEEEeCCCc----EEEEEEcCCCcHHHHHHHHHHHhCC-CCCCcceeE
Q psy15599 88 RTLKVRMLDGT----LKTLLVDDSQPVANLMVVICTKIGI-TNHDEYSLV 132 (2347)
Q Consensus 88 r~lkV~L~DG~----~~~v~Vd~sttv~evv~~Ic~~LGL-~~~e~FsL~ 132 (2347)
..|+||..++. +++|.|+..+|+.||+..+++++|| .++..|.||
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 47899999999 9999999999999999999999999 678999997
No 45
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=95.90 E-value=0.02 Score=58.05 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=54.2
Q ss_pred HHHHhHhhhccCC--CcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCH
Q psy15599 221 LYVQARDAVLDGT--HPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSE 298 (2347)
Q Consensus 221 LY~Qar~dIL~G~--~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~ 298 (2347)
-|..+...|-... .+++.++-++|=||.-|+..||++. ..|+++++. .+.=.++|+++.|||+
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~--~~P~~~d~~-------------~~~K~~AW~~l~gms~ 68 (87)
T PF00887_consen 4 EFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDT--PRPGFFDIE-------------GRAKWDAWKALKGMSK 68 (87)
T ss_dssp HHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S---CTTTTCHH-------------HHHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcC--CCCcchhHH-------------HHHHHHHHHHccCCCH
Confidence 3555555555544 4899999999999999999999983 344443211 1222479999999999
Q ss_pred HHHHHHHHHHhccC
Q psy15599 299 LDAKVLYTKTCRSL 312 (2347)
Q Consensus 299 ~eAk~~YL~~~rsl 312 (2347)
.+||..||+++..+
T Consensus 69 ~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 69 EEAMREYIELVEEL 82 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998653
No 46
>KOG4335|consensus
Probab=95.39 E-value=0.0089 Score=75.02 Aligned_cols=174 Identities=19% Similarity=0.336 Sum_probs=124.7
Q ss_pred CceEEEEEEee-cCCCCCCCCChhhHHHHHHHhHhhhccCC--CcCCHHHHHHHHhH-HHhhhcCCCCCCCCCCCcc---
Q psy15599 194 NEPVLLRRKFF-FSDGNIDSHDPVQLNLLYVQARDAVLDGT--HPVTQDLACQLAGI-QTHIQFGDYNPSKHKPPFL--- 266 (2347)
Q Consensus 194 ~~~L~LRrKff-~~d~~~~~~D~v~l~lLY~Qar~dIL~G~--~p~see~ai~LAAL-qlQie~GD~~~~k~~~~~l--- 266 (2347)
...+.|||+.| ..+......|..-..++|..+...++.++ ++|..+...+++|| +|-.++|+|.+..+.--+.
T Consensus 197 ~~~~~~~rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~ 276 (558)
T KOG4335|consen 197 EPFLQFRRNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLS 276 (558)
T ss_pred ccchHHhhhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccchhhhcchH
Confidence 34566777666 44444333344446778999999999988 88999999999999 9999999999866543333
Q ss_pred -ccccccchhhhhh----------------hhHHHHHHHHHHhccCCC---HHHHH-----HHHHHHhccCCCCCcEEEE
Q psy15599 267 -DLKEFLPQSYVKV----------------KGIEKKIFSEHKNHVGLS---ELDAK-----VLYTKTCRSLPTYGVTFFL 321 (2347)
Q Consensus 267 -~l~~~lP~~~lk~----------------k~~~~~I~~~hk~l~glS---~~eAk-----~~YL~~~rslp~YG~t~F~ 321 (2347)
.+..|||.++.+. .+| ..|+.+|+++.-.+ ..+.+ .+|++.+-..|+||+.+|+
T Consensus 277 ~~~qs~f~~w~cs~~lslqlk~~h~p~~~v~~w-p~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~ 355 (558)
T KOG4335|consen 277 EKLQSFFPAWLCSRGLSLQLKLRHRPARAVPGW-PELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFH 355 (558)
T ss_pred HHHHHHhHHHHhhcchhhhhhhccCCccccccc-HHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhh
Confidence 3568999887531 133 56888898884332 22333 3688888899999999998
Q ss_pred EE-Ec-cCC---CCcceeEEEE-ecCCceEEEeCCccceeeeeeccccceeee
Q psy15599 322 VK-EK-MKG---KNKLVPRLLG-VTKDSVLRLDERTKEIMKTWPLTTVRRWGA 368 (2347)
Q Consensus 322 Vk-~k-~~g---~~~~~~vlLG-I~~~GI~ild~~tkevl~~~~~~~I~~w~~ 368 (2347)
-. +. .+| ....+++.++ |+..++++.+...|..+...++.++++|--
T Consensus 356 eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~~~~ 408 (558)
T KOG4335|consen 356 EARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEELKSWDH 408 (558)
T ss_pred hhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHHhcccCC
Confidence 32 11 111 1113467888 999999999998888888999999998864
No 47
>PTZ00458 acyl CoA binding protein; Provisional
Probab=95.35 E-value=0.058 Score=54.71 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=60.7
Q ss_pred HHHHhHhhhccCCC--cCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCH
Q psy15599 221 LYVQARDAVLDGTH--PVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSE 298 (2347)
Q Consensus 221 LY~Qar~dIL~G~~--p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~ 298 (2347)
+|.++...|-.-.. +++.++.++|=||.-|+..|+++.. .|+++++.. ...| ++|.++.|||+
T Consensus 4 ~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~--~P~~~d~~~--------raKw-----~AW~~l~~ms~ 68 (90)
T PTZ00458 4 LFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIK--EPSMFKYQD--------RKKY-----EAWKSIENLNR 68 (90)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCC--CCCcccHHH--------HHHH-----HHHHHcCCCCH
Confidence 37777777754333 6899999999999999999999653 354333211 1123 69999999999
Q ss_pred HHHHHHHHHHhccC-CCCC
Q psy15599 299 LDAKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 299 ~eAk~~YL~~~rsl-p~YG 316 (2347)
.+||.+||+++..+ |.|.
T Consensus 69 ~eA~~~YI~l~~~l~~~w~ 87 (90)
T PTZ00458 69 EDAKKRYVEIVTELFPNWE 87 (90)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 99999999999876 7664
No 48
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=95.24 E-value=0.053 Score=51.59 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=67.5
Q ss_pred HHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCC
Q psy15599 218 LNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLS 297 (2347)
Q Consensus 218 l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS 297 (2347)
+...|+|+..+|..=.-..+.++.++|=||.-|...||.+. .+|+|+++..- -.| ++|..++|.|
T Consensus 2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~--ekPG~~d~~gr--------~K~-----eAW~~LKGks 66 (87)
T COG4281 2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDG--EKPGFFDIVGR--------YKY-----EAWAGLKGKS 66 (87)
T ss_pred hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCC--CCCCccccccc--------hhH-----HHHhhccCcc
Confidence 34679999999988666678899999999999999999764 45787775431 123 7899999999
Q ss_pred HHHHHHHHHHHhccCC-CCC
Q psy15599 298 ELDAKVLYTKTCRSLP-TYG 316 (2347)
Q Consensus 298 ~~eAk~~YL~~~rslp-~YG 316 (2347)
.++|...||.++..|. .||
T Consensus 67 qedA~qeYialVeeLkak~~ 86 (87)
T COG4281 67 QEDARQEYIALVEELKAKYG 86 (87)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 9999999999998773 344
No 49
>KOG3751|consensus
Probab=94.95 E-value=0.32 Score=61.85 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=46.8
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
+...||||.-||..+.+.||...|+++|++.++.+-.+...+.|+||+..+
T Consensus 187 rklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P 237 (622)
T KOG3751|consen 187 RKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYP 237 (622)
T ss_pred cceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecc
Confidence 356799999999999999999999999999999999998889999998855
No 50
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=94.73 E-value=0.072 Score=53.83 Aligned_cols=48 Identities=29% Similarity=0.468 Sum_probs=44.9
Q ss_pred EEEEeCC---CcEEEEEEcCCCcHHHHHHHHHHHhCCC-CCCcceeEEecCC
Q psy15599 90 LKVRMLD---GTLKTLLVDDSQPVANLMVVICTKIGIT-NHDEYSLVRENPE 137 (2347)
Q Consensus 90 lkV~L~D---G~~~~v~Vd~sttv~evv~~Ic~~LGL~-~~e~FsL~~~~~~ 137 (2347)
++|+..| +++++|.|+..+|+.+|+..+.+++||. ++..|.||....+
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 7889888 9999999999999999999999999999 7899999998764
No 51
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=93.73 E-value=0.18 Score=51.35 Aligned_cols=48 Identities=31% Similarity=0.402 Sum_probs=44.4
Q ss_pred eeEEEEeCC---CcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEec
Q psy15599 88 RTLKVRMLD---GTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVREN 135 (2347)
Q Consensus 88 r~lkV~L~D---G~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~ 135 (2347)
..++|+..| ++++++.|...+|+.||+..+.+++||.. ++.|.||...
T Consensus 3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 468888877 99999999999999999999999999987 7999999986
No 52
>smart00455 RBD Raf-like Ras-binding domain.
Probab=93.65 E-value=0.13 Score=49.84 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=41.8
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEec
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVREN 135 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~ 135 (2347)
.++|+||||+...+.+.+..|+.|++..+|++-|| +++++.+|...
T Consensus 1 ~~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l-~~~~~~v~~~g 46 (70)
T smart00455 1 TCKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL-NPECCVVRLRG 46 (70)
T ss_pred CeEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC-CHHHEEEEEcC
Confidence 37899999999999999999999999999999999 67788888763
No 53
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=93.50 E-value=0.15 Score=49.69 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=41.7
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
.++|+||||+...+.+.+..|+.|++..+|++-||. ++.+.||....
T Consensus 1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~-~~~~~v~~~~~ 47 (72)
T cd01760 1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN-PECCDVFLLGL 47 (72)
T ss_pred CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC-HHHEEEEEecC
Confidence 378999999999999999999999999999999997 55677877743
No 54
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.51 E-value=0.22 Score=49.37 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=51.6
Q ss_pred EEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhcc
Q psy15599 8 ICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILR 76 (2347)
Q Consensus 8 v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~ 76 (2347)
|++.|+ ..+++.++++.++.+++..|.+++... +..-|||+..........||+++++|..+...
T Consensus 1 V~llD~-~~~~~~v~~~~t~~~l~~~v~~~l~l~---e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDG-TTKTFEVDPKTTGQDLLEQVCDKLGLK---EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSE-EEEEEEEETTSBHHHHHHHHHHHHTTS---SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCC-CcEEEEEcCCCcHHHHHHHHHHHcCCC---CccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 344444 689999999999999999999999775 66889999933335668999999999988765
No 55
>KOG0817|consensus
Probab=92.29 E-value=0.37 Score=52.94 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=70.6
Q ss_pred hHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCC
Q psy15599 217 QLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGL 296 (2347)
Q Consensus 217 ~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~gl 296 (2347)
.+...|..+...+-.=.-..+.++.++|=||.=|+..||++. .+|+++++. ....| ++|+.+.||
T Consensus 4 ~~~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~--~kPg~~d~~--------~k~Kw-----~AW~~l~~~ 68 (142)
T KOG0817|consen 4 TLEAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNT--PKPGFFDEE--------GKAKW-----QAWNSLGGM 68 (142)
T ss_pred hHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCC--CCCchhhHH--------HHHHH-----HHHHhcCCC
Confidence 355567788877766555588999999999999999998765 445554432 12234 779999999
Q ss_pred CHHHHHHHHHHHhccC-CCCCcEEEEEE
Q psy15599 297 SELDAKVLYTKTCRSL-PTYGVTFFLVK 323 (2347)
Q Consensus 297 S~~eAk~~YL~~~rsl-p~YG~t~F~Vk 323 (2347)
+..+|+..||+++..+ |.|+...=...
T Consensus 69 s~~eA~~~Yv~~~~~l~~~~~~~~~~~~ 96 (142)
T KOG0817|consen 69 SKEEAMEAYVEKVEELIPKYGAEAETEE 96 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999876 99997764443
No 56
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=91.99 E-value=0.19 Score=49.00 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=42.1
Q ss_pred EEEEEe---cCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc
Q psy15599 6 LKICIV---DRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL 64 (2347)
Q Consensus 6 L~v~~~---~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL 64 (2347)
|+|..- .+-..||+-+.|.++..++|..+-+|+... ++.+||||+.. .+.|-
T Consensus 2 l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~---qPe~y~LFl~v----dg~~~ 56 (87)
T cd01776 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVT---QPEEYSLFLFV----EETWQ 56 (87)
T ss_pred eeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhccC---ChhheeEEEEE----CCcEE
Confidence 556652 234889999999999999999999999987 78999999944 35554
No 57
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=91.68 E-value=1 Score=49.41 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=61.7
Q ss_pred CCcceeEEEEecCCceEEEeCCccceeeeeeccccceeee-eC---ceEEEEeCCCc-C--c--EEEEechHHHHHHHHH
Q psy15599 329 KNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGA-SS---NVFTLDFGDYS-D--N--YYSVQTTEAEQIQQLI 399 (2347)
Q Consensus 329 ~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~-~~---~~f~I~~~d~~-~--~--~f~~~T~q~k~I~~LI 399 (2347)
+..+.+++|.|+..||.++|+.+++++..+|+.+|.-|.. +. +.|.+...+.. + . .|.+.+ .+.+|...|
T Consensus 48 ~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~-~A~~i~~~i 126 (140)
T PF00640_consen 48 KKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCED-QAQEICQAI 126 (140)
T ss_dssp TSTSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESS-CHHHHHHHH
T ss_pred cccCeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhh-HHHHHHHHH
Confidence 3456789999999999999999999999999999999999 43 57777443332 2 2 355555 689999888
Q ss_pred HHHHHHHHhh
Q psy15599 400 AGYIDIILKK 409 (2347)
Q Consensus 400 ~gYi~l~lk~ 409 (2347)
..=..+.+++
T Consensus 127 ~~aF~~a~~~ 136 (140)
T PF00640_consen 127 GQAFELAYQE 136 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776654
No 58
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=91.68 E-value=0.41 Score=46.40 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=40.8
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEec
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVREN 135 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~ 135 (2347)
++|+||||+...+.+.+..|+.|++..+|++-||. ++.+.+|...
T Consensus 2 crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~-~~~~~vf~~g 46 (73)
T cd01817 2 CRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN-YAAVDLFLVG 46 (73)
T ss_pred cEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC-hhHEEEEEec
Confidence 78999999999999999999999999999999997 4567777764
No 59
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=91.39 E-value=0.39 Score=56.27 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=57.8
Q ss_pred cceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhh
Q psy15599 2 ATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 2 ~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
....++|++.|+ .++++.|++++++.+++..+..++... .+..||||..+.+.....|+.+.++|-...
T Consensus 2 ~~~~~~V~l~dg-~~~~~~~~~~~t~~ev~~~v~~~~~l~---~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~ 70 (207)
T smart00295 2 KPRVLKVYLLDG-TTLEFEVDSSTTAEELLETVCRKLGIR---ESEYFGLQFEDPDEDLSHWLDPAKTLLDQD 70 (207)
T ss_pred CcEEEEEEecCC-CEEEEEECCCCCHHHHHHHHHHHhCCC---ccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence 357899999886 578999999999999999999999874 679999999887655568999877766554
No 60
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.10 E-value=0.85 Score=44.29 Aligned_cols=46 Identities=30% Similarity=0.463 Sum_probs=41.5
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.++|...+|....+.|...+++..++...|++.|+...+.|-|++.
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd 47 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD 47 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence 5789999999999999999999999999999999988777887775
No 61
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=90.95 E-value=0.42 Score=46.60 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=37.4
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEec
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVREN 135 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~ 135 (2347)
++++|+||||+...+.+.+..|+.|++..+|++-||... .+.+|...
T Consensus 1 k~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~-~~~V~~~~ 47 (71)
T PF02196_consen 1 KTCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPE-CCDVRLVG 47 (71)
T ss_dssp -EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CC-CEEEEEEE
T ss_pred CeEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHH-HEEEEEcC
Confidence 478999999999999999999999999999999999653 55566543
No 62
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=90.74 E-value=0.54 Score=46.05 Aligned_cols=47 Identities=30% Similarity=0.314 Sum_probs=41.1
Q ss_pred EEEEe--C--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 90 LKVRM--L--DGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 90 lkV~L--~--DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
++|-+ + +-+.+++.|.+.+|+.+|+..++.++++.+++.||||...+
T Consensus 2 l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vd 52 (87)
T cd01776 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVE 52 (87)
T ss_pred eeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEEC
Confidence 45555 3 34689999999999999999999999999999999998866
No 63
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=90.30 E-value=0.52 Score=46.96 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=43.3
Q ss_pred EEEeCC-CcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEecCCc
Q psy15599 91 KVRMLD-GTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVRENPED 138 (2347)
Q Consensus 91 kV~L~D-G~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~~~~ 138 (2347)
.|++|- |+...|.|.+.+|+.||++.+.+++.+.+ +..|+||.....+
T Consensus 5 S~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~G 54 (87)
T cd01784 5 SVFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYIVHTSG 54 (87)
T ss_pred cEeCCCCCceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEEEEeeCC
Confidence 488999 99999999999999999999999999974 7999999986544
No 64
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=89.84 E-value=1.8 Score=46.94 Aligned_cols=78 Identities=8% Similarity=0.129 Sum_probs=60.4
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC--ceEEEEeCCCcC--cEEEEech-HHHHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS--NVFTLDFGDYSD--NYYSVQTT-EAEQIQQLIAGYIDII 406 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~--~~f~I~~~d~~~--~~f~~~T~-q~k~I~~LI~gYi~l~ 406 (2347)
++++.|-|++.||.++|+.+++++..+|...|.-|+.++ +.|-+...+..+ ..+.|.+. .++.|..-|..-..+.
T Consensus 39 ~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~r~FafI~~~~~~~~~CHVF~c~~~a~~i~~tv~~ac~l~ 118 (123)
T cd01216 39 WKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDVRDFAFIMRTERRRFMCHVFRCEPNAGALATTVEAACKLR 118 (123)
T ss_pred CeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCCcEEEEEEEcCCCeEEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999865 556555544433 24555553 5888888888887777
Q ss_pred Hhh
Q psy15599 407 LKK 409 (2347)
Q Consensus 407 lk~ 409 (2347)
+++
T Consensus 119 y~k 121 (123)
T cd01216 119 YQK 121 (123)
T ss_pred hhc
Confidence 644
No 65
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=89.53 E-value=1.9 Score=47.34 Aligned_cols=80 Identities=20% Similarity=0.396 Sum_probs=60.5
Q ss_pred cceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCc--CcEEEEechH-HHHHHHHHHHHHH
Q psy15599 331 KLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYS--DNYYSVQTTE-AEQIQQLIAGYID 404 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~--~~~f~~~T~q-~k~I~~LI~gYi~ 404 (2347)
+...++|-|+.+||.++|+.|+.++..+|+.+|.-...++ +.|.....+.. ..+|.+.|.+ ++.|.--|..-.+
T Consensus 51 kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~~~~~H~f~~~k~~k~A~~i~lti~~aF~ 130 (139)
T cd01215 51 HKTRITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGEPGGKHRFYGIKTAQAADQVVLAIRDLFQ 130 (139)
T ss_pred ccceEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEcCCCcEEEEEEEhHHcchhhhhhHHHHHH
Confidence 3468999999999999999999999999999986555433 67888776532 3478888865 5777766777666
Q ss_pred HHHhhh
Q psy15599 405 IILKKK 410 (2347)
Q Consensus 405 l~lk~r 410 (2347)
+....+
T Consensus 131 va~e~k 136 (139)
T cd01215 131 VVFELK 136 (139)
T ss_pred HHHHHh
Confidence 665543
No 66
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=89.14 E-value=0.73 Score=44.71 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=46.0
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEecCC
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVRENPE 137 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~~~ 137 (2347)
...++|+--|.+.+-+.|...||+.+++....+.+||.. .+.|+||...-.
T Consensus 2 d~VlkvykaDQt~kyili~K~Tta~evv~lal~eFgi~~~s~~~sLceVtV~ 53 (85)
T cd01785 2 DHVLKVYKADQTCKYLLIYKETTAHEVVMLALQEFGITAPSSNFSLCEVSVT 53 (85)
T ss_pred cceEEEEecCcceeEEEEeccccHHHHHHHHHHHhCCCCCccceEEEEEEec
Confidence 357899999999999999999999999999999999986 589999988653
No 67
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=88.47 E-value=1 Score=45.70 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=56.1
Q ss_pred EEEEEecCCe---eEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccc-cCCCcccccccc-CCchhhhhccCCcc
Q psy15599 6 LKICIVDRNV---TKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLS-DGDVKKGVWLEP-GRNLEYYILRNGDE 80 (2347)
Q Consensus 6 L~v~~~~~~~---~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~-~~~~~k~~WL~~-~~tL~~y~l~~~~~ 80 (2347)
++|.|+-... ....+|.++++|.++..+|-..+..+ ++.--|++. +.++....++.. .++|.+|++++|..
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~----~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP----PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-----TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC----cccEEEEEEecCCCccccccCCCccEeecCCCCCCCE
Confidence 5666655544 78899999999999999998887765 466667766 455566677755 89999999999988
Q ss_pred cccc
Q psy15599 81 LEYR 84 (2347)
Q Consensus 81 L~~~ 84 (2347)
++..
T Consensus 78 i~V~ 81 (87)
T PF14560_consen 78 IHVV 81 (87)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 68
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=88.29 E-value=1.2 Score=45.65 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=41.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCC-CCCcceeEEe
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGIT-NHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~-~~e~FsL~~~ 134 (2347)
.....+||-++.+.|.|++++|+.+|+..+.+++.+. ++..|+||..
T Consensus 7 ~~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~ 54 (96)
T cd01778 7 TSTSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALFER 54 (96)
T ss_pred EEEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEEEE
Confidence 3456788999999999999999999999999999997 4789999965
No 69
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=88.14 E-value=2.2 Score=41.78 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=39.2
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.|+.++|....+.|+++.|+.++-..|+.+.|++. +.+.|++.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~-~~q~L~~~ 46 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE-EQQRLLFK 46 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH-HHeEEEEC
Confidence 5778999999999999999999999999999999854 56777654
No 70
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=87.95 E-value=2.6 Score=45.11 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=53.8
Q ss_pred cceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCc-C--cE--EEEechHHHHHHHHHHHH
Q psy15599 331 KLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYS-D--NY--YSVQTTEAEQIQQLIAGY 402 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~-~--~~--f~~~T~q~k~I~~LI~gY 402 (2347)
+..+++|-|+..||.++|.++++++..||+.+|..+...+ +.|-+...+.. + .. |.|.+. ++.|...|..-
T Consensus 40 ~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~-a~~i~~~l~~a 118 (123)
T cd00934 40 KGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKV-AEPIALTLGQA 118 (123)
T ss_pred CCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCch-HHHHHHHHHHH
Confidence 3468999999999999999999999999999999888764 67888776543 2 23 444444 57666665543
No 71
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=87.81 E-value=1.4 Score=48.31 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=59.8
Q ss_pred CCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC------ceEEEEeCCC---cCc--EEEEechHHHHH
Q psy15599 327 KGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS------NVFTLDFGDY---SDN--YYSVQTTEAEQI 395 (2347)
Q Consensus 327 ~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~------~~f~I~~~d~---~~~--~f~~~T~q~k~I 395 (2347)
+|+-++..++|-|+..||.+.|..+++.+..||++.|......+ +.|.|...+. .+. .|.|..-.+..+
T Consensus 34 ~~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~~~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev~a~~~ 113 (131)
T PF08416_consen 34 KGRIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADPDSRRYNSILGFVVRKPGSSKPNVHLFQCEEVDAEQP 113 (131)
T ss_dssp SS-SS-EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEETTTTEECBEEEEEEEETTCCCEEEEEEEETCTCTTSH
T ss_pred CCCcccEEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccCCCCccceEEEEEEecCCCCCCcEEEEEcCCCCHHHH
Confidence 45567788999999999999999999999999999999888754 3566666432 122 344446667888
Q ss_pred HHHHHHHHHHHH
Q psy15599 396 QQLIAGYIDIIL 407 (2347)
Q Consensus 396 ~~LI~gYi~l~l 407 (2347)
..-|..|+.-++
T Consensus 114 ~~~I~~~v~~~~ 125 (131)
T PF08416_consen 114 AEDIVSAVSKVK 125 (131)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 888888876554
No 72
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=87.37 E-value=2.6 Score=42.15 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=42.4
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
.-.|+|+||||+.....+..+.|+.+|..-|-..++......|.|+...+
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~P 55 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFP 55 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSS
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCC
Confidence 34689999999999999999999999999999888877765688876544
No 73
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=87.15 E-value=1.1 Score=44.69 Aligned_cols=80 Identities=10% Similarity=0.156 Sum_probs=57.3
Q ss_pred EEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhhhccCCcccccccc
Q psy15599 8 ICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYYILRNGDELEYRRK 86 (2347)
Q Consensus 8 v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y~l~~~~~L~~~~~ 86 (2347)
++.+.-+..+.+++...|+..+|+..+.+||... .++.+|+||.....+.+ +-|.. ..+|- -.|..-|.
T Consensus 6 ~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~--~~p~~FALy~vh~~Ge~-rkL~d~E~PL~-------~Rll~GP~ 75 (87)
T cd01784 6 VFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIE--NSAEEFALYIVHTSGEK-RKLKATDYPLI-------ARVLQGPC 75 (87)
T ss_pred EeCCCCCceeEEEEecCCCHHHHHHHHHHhcccc--CCHHHeEEEEEeeCCCE-EECCCcCCCee-------hhhhcCCC
Confidence 4556657889999999999999999999999888 57899999997654432 22322 33332 23444567
Q ss_pred ceeEEEEeCCC
Q psy15599 87 MRTLKVRMLDG 97 (2347)
Q Consensus 87 ~r~lkV~L~DG 97 (2347)
...++|+|+|.
T Consensus 76 e~~~~~flm~~ 86 (87)
T cd01784 76 EQVSKVFLMEK 86 (87)
T ss_pred cccEEEEEEec
Confidence 77777777763
No 74
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=85.73 E-value=1.5 Score=43.08 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.+.++.+.++++|.++..+|.++...+ +++.-|++ .|+-|+..++|..|++.+++.++..
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~----~~~q~L~~------~G~~L~d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVP----EEQQRLLF------KGKALADDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCC----HHHeEEEE------CCEECCCCCCHHHCCCCCCCEEEEE
Confidence 4567899999999999999999986543 56677776 3556888999999999999988754
No 75
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=85.64 E-value=5 Score=44.27 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=59.3
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcCc---EEEEech-H-HHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSDN---YYSVQTT-E-AEQIQQLIAGYI 403 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~~---~f~~~T~-q-~k~I~~LI~gYi 403 (2347)
+..++|-|+.+||.++|+.|++++..+|+.+|.-|..++ +.|-....+.... .+.|.+. + ++.|..-|+.=.
T Consensus 49 ~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r~FayIakd~~~~r~~CHvF~~~k~sa~~i~~avG~AF 128 (138)
T cd01268 49 PVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDRNFDRGFSYICRDGTTRRWMCHGFLAVKDTGERLSHAVGCAF 128 (138)
T ss_pred CCEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCCCCCcEEEEEecCCCcccEEEEEEEeeccchhHHHHHHHHHH
Confidence 456899999999999999999999999999998888765 6777777666432 4455443 2 677877776666
Q ss_pred HHHHhhh
Q psy15599 404 DIILKKK 410 (2347)
Q Consensus 404 ~l~lk~r 410 (2347)
..-+.++
T Consensus 129 ~~c~~~~ 135 (138)
T cd01268 129 AACLERK 135 (138)
T ss_pred HHHHHHh
Confidence 5555443
No 76
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=85.05 E-value=1.5 Score=43.33 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=48.6
Q ss_pred EEEEEecC---CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccc-cCCchhhhhcc-CCcc
Q psy15599 6 LKICIVDR---NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLE-PGRNLEYYILR-NGDE 80 (2347)
Q Consensus 6 L~v~~~~~---~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~-~~~tL~~y~l~-~~~~ 80 (2347)
|+|+|.|. +-+.++.|.|+++|.++-.+|-++...+ ++..-| +. +.-|. ..++|..|+++ +|+.
T Consensus 1 ~~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip----~~~QrL-~~------G~~L~dD~~tL~~ygi~~~g~~ 69 (75)
T cd01799 1 LNVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP----PAVQRW-VI------GQRLARDQETLYSHGIRTNGDS 69 (75)
T ss_pred CEEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcC----HHHEEE-Ec------CCeeCCCcCCHHHcCCCCCCCE
Confidence 56788666 5788999999999999999998876543 455555 31 11264 57899999998 5666
Q ss_pred cc
Q psy15599 81 LE 82 (2347)
Q Consensus 81 L~ 82 (2347)
++
T Consensus 70 ~~ 71 (75)
T cd01799 70 AF 71 (75)
T ss_pred EE
Confidence 65
No 77
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=84.65 E-value=3.4 Score=41.93 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=50.4
Q ss_pred eEEEEEEecCC---eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhh
Q psy15599 4 LSLKICIVDRN---VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYY 73 (2347)
Q Consensus 4 ~~L~v~~~~~~---~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y 73 (2347)
-.|||+..+.. ..|++.+.+.+++.+|+..+.+|+... .+|.+|.||-....+...+-|.+ ..+|.-.
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~--~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~ 74 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLA--EDPSDYCLVEVEESGGEERPLDDDECPLQIQ 74 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTS--SSGGGEEEEEEECTTTEEEEETTTSBHHHHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCC--CCCCCEEEEEEEcCCCEEEEcCCCCchHHHH
Confidence 35899997775 399999999999999999999999984 68999999622233344445544 4444443
No 78
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=84.57 E-value=5.5 Score=40.47 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=43.0
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.+..|+|+.++|..+.+.|..++|+..|+..+|.+.||.. +.+.|++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~-~~~rf~f~ 57 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM-NSVRFLFD 57 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc-cceEEEEC
Confidence 45678999999999999999999999999999999999964 56777665
No 79
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=84.46 E-value=3.2 Score=40.18 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=37.5
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.|..++|....+.++++.|+.++-..|+.+.|++. +.+.|++.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~Li~~ 44 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPP-DQLRVIFA 44 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCH-HHeEEEEC
Confidence 357889999999999999999999999999999854 45666654
No 80
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=84.44 E-value=1.6 Score=42.53 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=52.7
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccC-CchhhhhccCCcccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPG-RNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~-~tL~~y~l~~~~~L~~~ 84 (2347)
|+|.....+.+..+.+.|+++|.++-.+|-++... ++++.-|+. .|+-|+.. .+|+.|++++|+.++++
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gi----p~~~q~Li~------~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGI----PASQQQLIY------NGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCC----CHHHeEEEE------CCeEccCCcccHHHcCCCCCCEEEEe
Confidence 35666634566899999999999999999887654 356666665 24567764 78999999999988765
No 81
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=84.18 E-value=5.6 Score=43.70 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=55.6
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCc-C--cEEEEechH---HHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYS-D--NYYSVQTTE---AEQIQQLIAGY 402 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~-~--~~f~~~T~q---~k~I~~LI~gY 402 (2347)
+.++.|-|+..||.++|+.+++++..+|+.+|.-+..++ +.|.....+.. + ..+.|.+.. +.+|...|+.=
T Consensus 44 ~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~tig~A 123 (132)
T cd01267 44 IPKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTIGQA 123 (132)
T ss_pred CCeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999998887654 56766665543 2 356666654 67777666654
Q ss_pred HHH
Q psy15599 403 IDI 405 (2347)
Q Consensus 403 i~l 405 (2347)
.++
T Consensus 124 F~~ 126 (132)
T cd01267 124 FEL 126 (132)
T ss_pred HHH
Confidence 433
No 82
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=84.15 E-value=1.9 Score=41.47 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=51.9
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRKM 87 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~~ 87 (2347)
+.+.++.|.++.+|.++...|.++...+ +++.-|++ +|+-|....+|..|++.+|+.+++.-+.
T Consensus 5 g~~~~~~v~~~~tV~~lK~~i~~~~~~~----~~~~~L~~------~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 5 GKTFTLEVDPDDTVADLKQKIAEETGIP----PEQQRLIY------NGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp SEEEEEEEETTSBHHHHHHHHHHHHTST----GGGEEEEE------TTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CcEEEEEECCCCCHHHhhhhcccccccc----cccceeee------eeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 4578999999999999999999988743 56666666 3566888999999999999988765443
No 83
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=84.01 E-value=2.6 Score=40.47 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=29.2
Q ss_pred EEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 92 VRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 92 V~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
|-.++++..+|++.++++..+|+++.|.++||... .|.|...
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~ 42 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHN 42 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEET
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEEC
Confidence 34589999999999999999999999999999765 6777654
No 84
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=83.96 E-value=6 Score=43.13 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=58.0
Q ss_pred CcceeEEEEecCCceEEEeCCccceeeeeeccccceeeee---CceEEEEeCCCcC---cEEEEech-HHHHHHHHHHHH
Q psy15599 330 NKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS---SNVFTLDFGDYSD---NYYSVQTT-EAEQIQQLIAGY 402 (2347)
Q Consensus 330 ~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~---~~~f~I~~~d~~~---~~f~~~T~-q~k~I~~LI~gY 402 (2347)
.++.++.|-|+..||.+++..++.++..||+.+|..+... ++.|-+...+... ..+.|.+. .+.+|...|...
T Consensus 41 ~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~a~~i~~~i~~a 120 (134)
T smart00462 41 KEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKAAEDIALAIGQA 120 (134)
T ss_pred CCCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCchHHHHHHHHHHH
Confidence 3456899999999999999999999999999999877776 3667777655443 24444433 256777777777
Q ss_pred HHHHHh
Q psy15599 403 IDIILK 408 (2347)
Q Consensus 403 i~l~lk 408 (2347)
....+.
T Consensus 121 F~~a~~ 126 (134)
T smart00462 121 FQLAYE 126 (134)
T ss_pred HHHHHH
Confidence 655543
No 85
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=83.93 E-value=3.1 Score=40.50 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=38.3
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
++|++++|+...+.++++.||.++-..|....|++. +...|++.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~-~~q~Li~~ 44 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDP-CCQRWFFS 44 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCH-HHeEEEEC
Confidence 478999999999999999999999999999999844 55677754
No 86
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=83.80 E-value=1.9 Score=42.24 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=51.7
Q ss_pred EEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 7 KICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 7 ~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+|+|... .+.++.++|+.+|.++-.+|.++... ++++.-|+. .|+-|+..++|..|+++++..++..
T Consensus 2 qi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~Li~------~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 2 QLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGI----DVEDQVLLL------AGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred EEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCC----CHHHEEEEE------CCeECCCCCCHHHcCCCCCCEEEEE
Confidence 4566554 57899999999999999999887543 345666665 2445888999999999999988754
No 87
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=83.44 E-value=1.8 Score=42.24 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=34.6
Q ss_pred EEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCc
Q psy15599 91 KVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDE 128 (2347)
Q Consensus 91 kV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~ 128 (2347)
.|.||||+..++.|.+..|+.|++...|++-|+...++
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh 40 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEH 40 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHh
Confidence 58999999999999999999999999999999966533
No 88
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=83.17 E-value=6.5 Score=38.36 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=37.7
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|+...+.|+.+.|+.++-..|+.+.|++.. .+-|++
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~-~qrL~~ 45 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ-QQRLIY 45 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChh-hEEEEE
Confidence 57899999999999999999999999999999997543 456654
No 89
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=83.05 E-value=2.3 Score=41.55 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=49.0
Q ss_pred eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccccc
Q psy15599 15 VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRK 86 (2347)
Q Consensus 15 ~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~ 86 (2347)
-+..++|.++.+|.++-..|.++... ++++.-|+. .++.|.++++|..|++.+|+.+++..+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g~----~~~~qrL~~------~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 11 KEIEIDIEPTDKVERIKERVEEKEGI----PPQQQRLIY------SGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHhHhhCC----ChhhEEEEE------CCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 45678999999999999999887643 356666664 156788899999999999999887654
No 90
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=83.01 E-value=2.4 Score=40.98 Aligned_cols=67 Identities=9% Similarity=0.204 Sum_probs=50.4
Q ss_pred EEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 7 KICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 7 ~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+|.|...+-..++.+.++.+|.++...|.++...+ ++..-|+.. +.-|...++|..|++.+|+.|+.
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~----~~~q~L~~~------g~~l~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVE----PRDQKLIFK------GKERDDAETLDMSGVKDGSKVML 68 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCC----hHHeEEeeC------CcccCccCcHHHcCCCCCCEEEE
Confidence 45555557778999999999999999998876543 455666652 33466788999999998887754
No 91
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=82.54 E-value=4.9 Score=39.43 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=37.5
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
|.|..++|...++.|+++.|+.++-..|..+.|++ .+.+.|++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~q~L~~~ 44 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ-ADQFWLSFE 44 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC-HHHeEEEEC
Confidence 35888999999999999999999999999999984 456677643
No 92
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=82.31 E-value=6.1 Score=38.13 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=38.2
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|...++.++.+.|+.++-..|+...|++ ++..-|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~~ 45 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP-VEQQRLIY 45 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence 578999999999999999999999999999999984 44566665
No 93
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=82.15 E-value=2.3 Score=44.68 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=48.4
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.+.++.+.|+.+|.++-.+|.++... +.++.-|++ .|+-|+...+|+.|++.+++.|+..
T Consensus 37 G~~~~leV~~~~TV~~lK~kI~~~~gi----p~~~QrLi~------~Gk~L~D~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 37 GTCFELRVSPFETVISVKAKIQRLEGI----PVAQQHLIW------NNMELEDEYCLNDYNISEGCTLKLV 97 (103)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCC----ChHHEEEEE------CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 456779999999999999999887543 346666766 2455888999999999999988754
No 94
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=82.12 E-value=4.7 Score=39.30 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred EEEEeC-CCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 90 LKVRML-DGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 90 lkV~L~-DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.|+++ +|....+.++++.|+.++-..|..+.|++. +.+.|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~-~~q~Li~~ 45 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPA-SQQQLIYN 45 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCH-HHeEEEEC
Confidence 468899 999999999999999999999999999854 45666654
No 95
>PTZ00044 ubiquitin; Provisional
Probab=81.89 E-value=2.5 Score=41.53 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=51.8
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+|+|.. .+-+.++.|.|+++|.++-.+|.++... ++++.-||+. |.-|...++|.+|++.++..+++.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi----~~~~q~L~~~------g~~L~d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGI----DVKQIRLIYS------GKQMSDDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC----CHHHeEEEEC------CEEccCCCcHHHcCCCCCCEEEEE
Confidence 355533 3457789999999999999999998754 3577777762 344888889999999999877754
No 96
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=81.17 E-value=8.6 Score=38.38 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=37.3
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
-.|.|+||||..+...+..+.|+.+|...|....+.. ...|.|+...+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~-~~~f~L~t~~P 52 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG-NDPFTLNSPFP 52 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC-CCCEEEEeCCC
Confidence 3588999999999999999999999999995544432 34577765533
No 97
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=79.50 E-value=3 Score=41.49 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=47.7
Q ss_pred eEEEE-ecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 16 TKTMQ-FDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 16 ~kt~~-f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
..++. +.|+.+|.++-.+|.++... +++..-||. .|+-|+...+|.+|++++++.+++.-
T Consensus 13 ~~~l~~v~~~~TV~~lK~~i~~~~gi----~~~~QrLi~------~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 13 TRTVDSLSRLTKVEELREKIQELFNV----EPECQRLFY------RGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred EEEeeccCCcCcHHHHHHHHHHHhCC----CHHHeEEEe------CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 35674 78999999999999987653 356677776 36678999999999999999888644
No 98
>KOG3535|consensus
Probab=79.32 E-value=4.5 Score=50.44 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=49.3
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeee---eCceEEEEeCCC-cCcEEEEechHH
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGA---SSNVFTLDFGDY-SDNYYSVQTTEA 392 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~---~~~~f~I~~~d~-~~~~f~~~T~q~ 392 (2347)
..+||-|+..||.++|++|+-+++.+|.++|.-+.- +.+-|-..+|.. ...+|-+.|.++
T Consensus 92 qrI~l~Is~~GIKI~DEKtGav~H~hpV~~ISfIArD~tD~RAFGyVcG~eG~hkF~aIKTaQa 155 (557)
T KOG3535|consen 92 QRITLQISIDGIKILDEKTGAVLHNHPVSRISFIARDSTDARAFGYVCGEEGKHKFYAIKTAQA 155 (557)
T ss_pred ceEEEEEeecceEEeeccccceeccCccceeeeeecccccccceeeeecCCCceeEEEEecccc
Confidence 469999999999999999999999999999965542 237788888755 335899999875
No 99
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=78.62 E-value=3.3 Score=41.80 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=49.9
Q ss_pred EEEEEecC--CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchh
Q psy15599 6 LKICIVDR--NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLE 71 (2347)
Q Consensus 6 L~v~~~~~--~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~ 71 (2347)
|||+..+. +..|++.+.++++..+||..+.+|+... .+|.+|.||....+....+-|.+ ..++.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~--~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLD--DDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCc--CCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 68888774 7999999999999999999999999988 48999999986665333334444 44443
No 100
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=78.06 E-value=3 Score=40.92 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=49.1
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+.+.++.++|+++|.++-.+|.++...+ .+++-|+. .|+-|+.+++|..|++++++.+++..
T Consensus 8 g~~~~l~v~~~~tV~~lK~~I~~~~gi~----~~~q~L~~------~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 8 GRSSIYEVQLTQTVATLKQQVSQRERVQ----ADQFWLSF------EGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCC----HHHeEEEE------CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4677899999999999999998876532 45565553 35668889999999999999888654
No 101
>PTZ00044 ubiquitin; Provisional
Probab=77.86 E-value=11 Score=36.90 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=38.6
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.|..++|...++.++++.|+.++-..|+.+.|++. +..-|++.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~ 46 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDV-KQIRLIYS 46 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH-HHeEEEEC
Confidence 4778999999999999999999999999999999844 55666643
No 102
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=77.68 E-value=7.7 Score=40.46 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=41.2
Q ss_pred eEEEEeCCCc----EEEEEEcCCCcHHHHHHHHHHHhCCC----CCCcceeEEecCCcc
Q psy15599 89 TLKVRMLDGT----LKTLLVDDSQPVANLMVVICTKIGIT----NHDEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~----~~~v~Vd~sttv~evv~~Ic~~LGL~----~~e~FsL~~~~~~~e 139 (2347)
..+.|+-|+. ++-|.|.+++|+.+|++.+.+++.+. ....|+||.....++
T Consensus 23 vmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe 81 (112)
T cd01782 23 VMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGE 81 (112)
T ss_pred EEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCc
Confidence 5667777764 67789999999999999999999943 345999999876543
No 103
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=77.59 E-value=13 Score=37.18 Aligned_cols=43 Identities=35% Similarity=0.404 Sum_probs=36.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCccee
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSL 131 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL 131 (2347)
..+.|..++|....+.++++.||.++-..|....|+. .+.+.|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~-~~~qrL 45 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP-AFQQRL 45 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC-HHHEEE
Confidence 5788999999999999999999999999999999974 344455
No 104
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=77.36 E-value=11 Score=36.67 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=37.6
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|+...+.++++.|+.++-..|..+.|++. +..-|++
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~-~~q~L~~ 45 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 45 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCH-HHeEEEE
Confidence 4788999999999999999999999999999999853 4455654
No 105
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=77.11 E-value=14 Score=41.17 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=54.7
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCc--C--cEEEEechH-HHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYS--D--NYYSVQTTE-AEQIQQLIAGYI 403 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~--~--~~f~~~T~q-~k~I~~LI~gYi 403 (2347)
+.++.|-|+.+||.++|+.|++++..+++.+|.-...++ +.|.....+.. + .+|.|.+.+ +..|..-|+.=.
T Consensus 54 ~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~~~~~~ChvF~s~~~A~~I~~tigqAF 133 (142)
T cd01273 54 LQKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADDKDDKRMFSFIAKAEGASGKHSCFVFTSEKLAEDITLTIGQAF 133 (142)
T ss_pred CcEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecCCCCCeEEEEEecCCCCCCcEEEEEEeccchHHHHHHHHHHHH
Confidence 457999999999999999999999999999996665543 56777776552 2 367887765 677666555443
Q ss_pred H
Q psy15599 404 D 404 (2347)
Q Consensus 404 ~ 404 (2347)
+
T Consensus 134 ~ 134 (142)
T cd01273 134 D 134 (142)
T ss_pred H
Confidence 3
No 106
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=77.05 E-value=3.9 Score=40.97 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=31.9
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEec
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVREN 135 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~ 135 (2347)
...|||+-+||. ..|.++++.|+.++.+.|.+.+++... .|+||...
T Consensus 4 ~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~ 50 (80)
T PF11543_consen 4 SMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDR 50 (80)
T ss_dssp --EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSG
T ss_pred cEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecC
Confidence 356899999995 567899999999999999999999876 78887553
No 107
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=77.03 E-value=4.6 Score=40.22 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=46.7
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCC-----cceeEEecCCcccccCCCCcccchhchhhhhhhh
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHD-----EYSLVRENPEDEVENKPNFGTLTLKRKKEEKERD 161 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e-----~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~ 161 (2347)
+..+.|.+.+|+...+.+....++.+++..|.+.+++...+ .|.|.. .
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~--~------------------------- 54 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLAR--A------------------------- 54 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG---G-------------------------
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEe--c-------------------------
Confidence 34567777777899999999999999999999999975432 122221 0
Q ss_pred HHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEE
Q psy15599 162 LKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLR 200 (2347)
Q Consensus 162 ~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LR 200 (2347)
....|+++.+|.++|+.....|+||
T Consensus 55 --------------~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 55 --------------GGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp --------------GTEEEETTSBCGGGT--TT-EEEE-
T ss_pred --------------CCcccCCcCcHhHcCCCCCCEEEeC
Confidence 1146788899999999999999886
No 108
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=76.92 E-value=5.2 Score=42.39 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=50.5
Q ss_pred ecCCceEEEeCCccceeeeeeccccceeeee----C---ceEEEEeCCCcCcEEEEechHHHHHHHHHHHHH
Q psy15599 339 VTKDSVLRLDERTKEIMKTWPLTTVRRWGAS----S---NVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYI 403 (2347)
Q Consensus 339 I~~~GI~ild~~tkevl~~~~~~~I~~w~~~----~---~~f~I~~~d~~~~~f~~~T~q~k~I~~LI~gYi 403 (2347)
|+-+|+-+|+..+.+-...+||++|....++ . ..|.|.... ++.|.|.+.+.+.+...+..|+
T Consensus 29 iGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~--~G~f~Fsskd~k~~Lk~~r~yv 98 (118)
T PF06115_consen 29 IGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK--NGKFTFSSKDSKKVLKAIRKYV 98 (118)
T ss_pred EcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECC--CCEEEEEECChHHHHHHHHHhc
Confidence 4466888888877777779999999987653 2 348887753 3589999999999999999997
No 109
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=76.28 E-value=4.7 Score=39.16 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=44.7
Q ss_pred eEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 16 TKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 16 ~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
..++.++|+.+|.++-..|.++.+.+ ...+-|+. .|+-|...++|..|++.+++.+++.
T Consensus 11 ~~~l~v~~~~TV~~lK~~I~~~~~i~----~~~~~Li~------~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 11 KEEIEIAEDASVKDFKEAVSKKFKAN----QEQLVLIF------AGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCC----HHHEEEEE------CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 35899999999999999998876532 34444433 3456888889999999999888754
No 110
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=76.18 E-value=4.2 Score=36.50 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=38.2
Q ss_pred EEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEec
Q psy15599 91 KVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVREN 135 (2347)
Q Consensus 91 kV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~ 135 (2347)
+|++++|....+.++...|+.++...++.+.| ..+..|.|++..
T Consensus 1 ~v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~-~~~~~~~l~~~~ 44 (69)
T cd00196 1 KVKLNDGKTVELLVPSGTTVADLKEKLAKKLG-LPPEQQRLLVNG 44 (69)
T ss_pred CeEecCCCEEEEEcCCCCcHHHHHHHHHHHHC-cChHHeEEEECC
Confidence 36777999999999999999999999999999 466788888753
No 111
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=76.02 E-value=5.4 Score=38.52 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=50.1
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.|...+ +-..++.|.|+.+|.++-..|.++...+ ++..-|+. .|.-|..+++|..|++.+|+.+++.
T Consensus 3 i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~----~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 3 IKVKTLD-SQTHTFTVEEEITVLDLKEKIAEEVGIP----VEQQRLIY------SGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcC----HHHeEEEE------CCEECCCcCcHHHCCCCCCCEEEEE
Confidence 3344433 3567899999999999999998876543 45556665 1445777899999999999888754
No 112
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=75.66 E-value=6.1 Score=39.42 Aligned_cols=73 Identities=19% Similarity=0.096 Sum_probs=51.3
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
|.|.|....+ -+.++.++|+.+|.++-..|.++...+ ++..-|.. .-+|.-|....+|..|++.+|+.++.
T Consensus 3 ~~i~Vk~~~G-~~~~~~v~~~~TV~~lK~~I~~~~~i~----~~~qrL~~----~~~G~~L~D~~tL~~~gi~~gs~l~l 73 (80)
T cd01792 3 WDLKVKMLGG-NEFLVSLRDSMTVSELKQQIAQKIGVP----AFQQRLAH----LDSREVLQDGVPLVSQGLGPGSTVLL 73 (80)
T ss_pred eEEEEEeCCC-CEEEEEcCCCCcHHHHHHHHHHHhCCC----HHHEEEEe----ccCCCCCCCCCCHHHcCCCCCCEEEE
Confidence 6677766443 556789999999999999998876533 34443311 11345677888999999999988875
Q ss_pred cc
Q psy15599 84 RR 85 (2347)
Q Consensus 84 ~~ 85 (2347)
.-
T Consensus 74 ~~ 75 (80)
T cd01792 74 VV 75 (80)
T ss_pred EE
Confidence 43
No 113
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=75.61 E-value=4.9 Score=39.26 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=51.3
Q ss_pred EEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|... +-+.++.++|+++|.++-..|.++... ++++.-||+. +.-|...++|..|++.+++.+++..
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~----~~~~q~L~~~------g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI----PPDQQRLIFA------GKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCC----CHHHeEEEEC------CEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3555333 455689999999999999999988654 3566677762 3458888999999999888877543
No 114
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=75.10 E-value=4.6 Score=39.18 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=51.4
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
.|+|...+. ....+++.+++.+..++...+++...+ ....+-|++ .|.+|.+..|++.|++..|+.++.
T Consensus 2 ~i~v~~~~~-~~~~~~v~~~~~~~~l~~~~~~~~~i~---~~~~~~l~f------dG~~L~~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 2 TIKVRSQDG-KEIKFKVKPTTTVSKLIEKYCEKKGIP---PEESIRLIF------DGKRLDPNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEETTS-EEEEEEEETTSCCHHHHHHHHHHHTTT---T-TTEEEEE------TTEEE-TTSCHHHHT-STTEEEEE
T ss_pred EEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHhhCCC---ccceEEEEE------CCEEcCCCCCHHHCCCCCCCEEEE
Confidence 345554433 588999999999999999999987765 115677777 356799999999999999988763
No 115
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=74.78 E-value=4.5 Score=39.19 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=49.0
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+-+.++.++|+++|.++-..|.++... ++.+.-|+. +|+-|....+|..|++.+++.++..
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi----~~~~q~Li~------~G~~L~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGV----PPDQLRVIF------AGKELRNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCC----CHHHeEEEE------CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 456789999999999999999988654 356777765 2445888999999999999988754
No 116
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=74.76 E-value=15 Score=36.37 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=37.2
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
.|+|+||||..+...+..+.|+++|..-|-....- ...|.|+...+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t~~P 49 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMTSFP 49 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEeCCC
Confidence 58899999999999999999999999999765433 45677775533
No 117
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=74.42 E-value=18 Score=35.49 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=38.6
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCC-CCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGIT-NHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~-~~e~FsL~~~ 134 (2347)
.+.|..++|....+.++++.||.++-..|+...|+. .++..-|++.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 467888999999999999999999999999999983 4455666553
No 118
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=74.33 E-value=50 Score=39.12 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=67.2
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy15599 822 ASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTV 901 (2347)
Q Consensus 822 ~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AA 901 (2347)
+..+|...|.+.|-|--.+..||.-.-.......+.+.+.+++..+..|-++--.+|-++|.+|-+=-++.+-+.+.+.+
T Consensus 116 ~nQPP~iFv~~sK~VIl~ahkLVfiGDTl~r~~~~~dvr~~v~~~s~~Lc~~LK~~v~aTK~AAl~yPs~~AlqeMvd~v 195 (210)
T PF12026_consen 116 NNQPPKIFVAHSKFVILSAHKLVFIGDTLCREAQSADVRNEVLCSSNQLCDLLKTLVLATKKAALQYPSPSALQEMVDRV 195 (210)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHH
T ss_pred cCCCcchhhhcCcEEEEEeeeeeeeccHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 34567777999999999999999555544444555778999999999999999999999999998877888888888888
Q ss_pred HHHHhh
Q psy15599 902 EELRQA 907 (2347)
Q Consensus 902 e~L~~A 907 (2347)
+.|..-
T Consensus 196 ~eLs~~ 201 (210)
T PF12026_consen 196 KELSQH 201 (210)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 119
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=74.27 E-value=4.5 Score=39.39 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=49.6
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
|||++..+ -+.++.+.|+.+|.++-.+|.++... ++.+.-||. .|+-|+.+.+|..|++.++..++.
T Consensus 1 ~~vk~~~G-~~~~l~v~~~~TV~~lK~~I~~~~gi----~~~~q~Li~------~G~~L~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 1 LKVRLSTG-KDVKLSVSSKDTVGQLKKQLQAAEGV----DPCCQRWFF------SGKLLTDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred CeEEcCCC-CEEEEEECCcChHHHHHHHHHHHhCC----CHHHeEEEE------CCeECCCCCCHHHcCCCCCCEEEE
Confidence 57777544 56779999999999999999886443 245555554 245588899999999987777653
No 120
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=74.20 E-value=5.3 Score=40.62 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=43.0
Q ss_pred eEEEEEEec--CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCcccccccccc
Q psy15599 4 LSLKICIVD--RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSD 55 (2347)
Q Consensus 4 ~~L~v~~~~--~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~ 55 (2347)
-.|||+..+ .+..|++.+.++++..+|+..+.+|+... .+|.+|.||...
T Consensus 3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~--~~~~~y~L~e~~ 54 (90)
T smart00314 3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLT--DDPEEYVLVEVL 54 (90)
T ss_pred eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--CCcccEEEEEEe
Confidence 468888865 35889999999999999999999999987 458999999844
No 121
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=73.09 E-value=15 Score=36.62 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=37.7
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
-.|.|+||||..+...+..+.|+.+|...|....+- ...|.|...-+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~--~~~f~L~t~fP 51 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN--GGPFTLMTPFP 51 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC--CCCEEEEeCCC
Confidence 358899999999999999999999999999865532 25577765543
No 122
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=72.98 E-value=8.1 Score=39.05 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=50.2
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~~L~~~ 84 (2347)
|.|........-..+|.++++|.++..+|...+..+ ++.--|.+.+.++..-.-| ...++|.+|++.+|..++..
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~----~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTP----ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCC----ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 344443336667888999999999999997776543 3444554434332221235 45889999999999888754
No 123
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=72.13 E-value=9.5 Score=40.22 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=38.0
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEecC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVRENP 136 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~~ 136 (2347)
.++|.+.||++++|.|..-.++.+|+..+.++||+.+ +..|..|+.+.
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 4678899999999999999999999999999999987 67888888765
No 124
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=71.74 E-value=8.4 Score=37.92 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=49.1
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
++|.|... +....+.|.|+.+|.++-..|-++.+.+ ++.--|-. .|.-|....+|..|++.+|..+++
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~----~~~qrLi~------~Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR----PEKIVLKK------WYTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC----hHHEEEEe------CCcCCCCCCCHHHcCCCCCCEEEE
Confidence 35666554 6777889999999999999998876433 22211111 145688888999999999988875
No 125
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=71.70 E-value=15 Score=35.27 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=33.6
Q ss_pred eCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 94 MLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 94 L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.++|....+.|+++.|+.++-..|+...|++. +.+-|++.
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-~~~~L~~~ 41 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPP-EQQRLIYN 41 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTG-GGEEEEET
T ss_pred CCCCcEEEEEECCCCCHHHhhhhccccccccc-ccceeeee
Confidence 57999999999999999999999999999654 45555543
No 126
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=71.68 E-value=9.8 Score=38.18 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=39.6
Q ss_pred EEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc--ccCCchhhhhccCCccccccc
Q psy15599 8 ICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL--EPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 8 v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL--~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
|+|...+-.+-+.++|+.++.++...|.+.++.+ ...+.||.... ...-+ .+.++|..+++..|+.|++.|
T Consensus 7 lRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~----~~~~~L~~~~~---~~~~l~s~~~~tl~~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 7 LRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIP----DSSQSLSKDRN---NKEELKSSDSKTLSSLGLKHGDMLYLKP 79 (80)
T ss_dssp EEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS-------TTT---BSSGG---GGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred EEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCC----CcceEEEecCC---CCcccccCCcCCHHHcCCCCccEEEEec
Confidence 3444455567788999999999999999999766 24667766322 22223 458899999999999998776
No 127
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=69.92 E-value=28 Score=38.17 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=51.9
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcCc--EEEEec--h-HHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSDN--YYSVQT--T-EAEQIQQLIAGYI 403 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~~--~f~~~T--~-q~k~I~~LI~gYi 403 (2347)
+.++.|-|+.+||.++|+++++.+..++..+|.-...++ +.|.....+..+. .+.|.+ . .+..|..-|+.=.
T Consensus 40 ~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~~D~~d~~~FayIakd~~~~~~CHvF~~~~~~~A~~I~~tigqAF 119 (127)
T cd01274 40 IPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVCQDREDLNFFAYITKDTENRHYCHVFCVLTSGLAAEIITTLGQAF 119 (127)
T ss_pred CCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEecCCCCceEEEEEeeCCCCCEEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999987333333 4677776665432 344543 3 3677766665544
Q ss_pred HH
Q psy15599 404 DI 405 (2347)
Q Consensus 404 ~l 405 (2347)
++
T Consensus 120 ~~ 121 (127)
T cd01274 120 EV 121 (127)
T ss_pred HH
Confidence 33
No 128
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=69.71 E-value=14 Score=39.67 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=48.5
Q ss_pred eEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcC------cEEEEe--chH-HHHHH
Q psy15599 334 PRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSD------NYYSVQ--TTE-AEQIQ 396 (2347)
Q Consensus 334 ~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~------~~f~~~--T~q-~k~I~ 396 (2347)
.++|-|+..||.+++|++|.++...+|.+|.+..-+. +.|-+..++... ..|.|+ +.+ +.+|.
T Consensus 44 tm~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~eI~ 118 (129)
T cd01269 44 TMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCADESLVDEVM 118 (129)
T ss_pred EEEEEEeccceEEEcCCcceEEEecCccccchhhcCCCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHHHHH
Confidence 4789999999999999999999999999998776543 688888876641 357776 443 34443
No 129
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=69.51 E-value=26 Score=34.89 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=37.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..+.|..+.|+..++.++++.||.++-..|..+.|+.. +..-|.+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~-~~qrL~~~ 47 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPK-ERLALLHR 47 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCCh-HHEEEEEC
Confidence 46788999999999999999999999999999998743 44555443
No 130
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=69.39 E-value=14 Score=37.50 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=45.1
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC--CcceeEEecCCcc
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNH--DEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~--e~FsL~~~~~~~e 139 (2347)
+.|+.-|.|+.+.+.+.++..+.+++..|++++|+... ..|.|-|.+++++
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD 54 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGD 54 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCC
Confidence 35667789999999999999999999999999999864 8999999988765
No 131
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=68.89 E-value=16 Score=37.67 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=44.8
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
-.++|+-.|+++.++.+...+||.|++..+.++..+.+...|-|+....
T Consensus 3 y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 3 YCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred eEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEEC
Confidence 4689999999999999999999999999999999999888888887754
No 132
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=68.88 E-value=20 Score=41.01 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=56.2
Q ss_pred eEEEEecCCceEEEeCCccceeeeeeccccceee-ee------CceEEEEeCCCcCc---EEEEech---HHHHHHHHHH
Q psy15599 334 PRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWG-AS------SNVFTLDFGDYSDN---YYSVQTT---EAEQIQQLIA 400 (2347)
Q Consensus 334 ~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~-~~------~~~f~I~~~d~~~~---~f~~~T~---q~k~I~~LI~ 400 (2347)
+++|+|+++||.+.+.+...+++.+|+.+|.+.- |. .+-|.++.++..+. .|.|++. ++.+|..++.
T Consensus 109 evil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~~~~~~e~y~l~v~Qcss~~qA~~ICk~l~ 188 (200)
T PF10480_consen 109 EVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAGKNLLALKVGDERQEEYQLWVYQCSSDEQAQEICKVLG 188 (200)
T ss_pred eEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCcceEEEEEccCCCcceEEEEEEEcCCHHHHHHHHHHHH
Confidence 7889999999999999999999999999998654 32 25677788766432 4555553 5778888887
Q ss_pred HHHHHHH
Q psy15599 401 GYIDIIL 407 (2347)
Q Consensus 401 gYi~l~l 407 (2347)
.-++..+
T Consensus 189 ~aF~~v~ 195 (200)
T PF10480_consen 189 QAFDSVL 195 (200)
T ss_pred HHHHHhh
Confidence 7776665
No 133
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=68.84 E-value=6.5 Score=35.24 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 13 RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 13 ~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
.+..+++.|.+++++.+++..|.++++. ++.+|.|+..........|+ ..|.+..+..+++.+
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~----~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGL----PPEQQRLLVNGKILPDSLTL------EDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCc----ChHHeEEEECCeECCCCCcH------HHcCCCCCCEEEEEe
Confidence 4577889999999999999999999873 46889998854433333333 667777777776543
No 134
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=68.68 E-value=26 Score=35.36 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=38.7
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
.-.|.|+||||+.+.-.+..+.++.+|...|-. .|. ..+.|.|...-+
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~-~~~~f~L~t~FP 52 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGY-PNERFELLTNFP 52 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCC-CCCCEEEecCCC
Confidence 346889999999999999999999999998876 343 447788876544
No 135
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=67.86 E-value=28 Score=39.13 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=53.3
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCc-eEEEEeC---------------------C--CcCcEEEEe
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSN-VFTLDFG---------------------D--YSDNYYSVQ 388 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~-~f~I~~~---------------------d--~~~~~f~~~ 388 (2347)
.++-|-|+.+||.++++++++++..+++.+|. |..+.+ .|.+.-. . .+..+|.|+
T Consensus 50 t~V~L~IS~~gV~v~~~~tk~im~~h~L~~IS-y~AD~~d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFe 128 (156)
T cd01208 50 TEVDLFISTEKIMVLNTDLQEIXMDHALRTIS-YIADIGDLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHVFE 128 (156)
T ss_pred cEEEEEEEeCeEEEEecCccceeccCcccceE-EEecCCCeEEEEEeccccccccccccccCCcccccccccceeEEEEe
Confidence 47889999999999999999999999999994 444543 3322211 0 012379999
Q ss_pred chHHHHHHHHHHHHHHH
Q psy15599 389 TTEAEQIQQLIAGYIDI 405 (2347)
Q Consensus 389 T~q~k~I~~LI~gYi~l 405 (2347)
+.++.+|..-|+.=.++
T Consensus 129 s~~Aq~Ia~TIGQAF~l 145 (156)
T cd01208 129 SDEAQFIAQSIGQAFQV 145 (156)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 99999999888766544
No 136
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=67.73 E-value=9.8 Score=35.50 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=44.1
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
+.|...+ -...++|.++++|.++...|.+++..+ +...-|+.. +.-|..+++|..|++.+|+
T Consensus 3 i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~----~~~~~L~~~------g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 3 LTVKTLD--GTITLEVKPSDTVSELKEKIAELTGIP----VEQQRLIYK------GKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred EEEEECC--ceEEEEECCCCcHHHHHHHHHHHHCCC----HHHEEEEEC------CEECCCCCCHHHcCCcCCC
Confidence 3444444 477899999999999999999887543 344445442 2347778999999987763
No 137
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=67.31 E-value=24 Score=37.74 Aligned_cols=69 Identities=29% Similarity=0.362 Sum_probs=47.1
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccc-----cccccccCCCccccccccCCchhhhhccC
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKD-----YGLFLSDGDVKKGVWLEPGRNLEYYILRN 77 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~d-----yglf~~~~~~~k~~WL~~~~tL~~y~l~~ 77 (2347)
.++||..+.++.-...+.|.|+++|+++-..|...-|.. |.. -.+-+ --.|+-|+..++|..+.+..
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d----~~~~p~s~~~lRL----I~~GriL~d~~tL~~~~~~~ 73 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPED----WEERPKSPSDLRL----IYAGRILEDNKTLSDCRLPS 73 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTT----SSSTT-SGGGEEE----EETTEEE-SSSBTGGGT--T
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccc----cccCCCChhhEEE----EeCCeecCCcCcHHHhCCCC
Confidence 478999998776589999999999999999999876654 333 01111 12377888899999987654
Q ss_pred Cc
Q psy15599 78 GD 79 (2347)
Q Consensus 78 ~~ 79 (2347)
+.
T Consensus 74 ~~ 75 (111)
T PF13881_consen 74 GE 75 (111)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 138
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=67.18 E-value=23 Score=34.43 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=35.4
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|.. ++.++++.||.++-..|+.+.|+ ..+.+.|.+
T Consensus 2 ~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i-~~~~~~Li~ 44 (71)
T cd01808 2 KVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKA-NQEQLVLIF 44 (71)
T ss_pred EEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCC-CHHHEEEEE
Confidence 36778888974 89999999999999999999997 445666654
No 139
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=66.56 E-value=38 Score=38.43 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhh-hhccCchhhhhcccccCch--hhhhHHHHHHHH
Q psy15599 1252 QSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSL-VSFAYSPEFVNRSSHFGDS--TLTAQEPILSAG 1328 (2347)
Q Consensus 1252 ~~ak~v~~at~~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l-~~~as~~efa~~~~~is~~--~~~~q~~iv~~~ 1328 (2347)
.-=+.|..+.++|..-+. . +=..+..+......+..|+..+ .....+.||+..+...+.. .+.-+..+-..+
T Consensus 12 ~LQ~~v~~sVs~L~~fvs---~--~WR~~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~~NA~~~~D~~L~~kL~~qL 86 (159)
T PF08824_consen 12 RLQQEVESSVSNLMSFVS---S--NWRSPESLERHINEIRAAVDRVRASLREFLDFARGALANASNLSDRNLQAKLRRQL 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHC---S--STT-CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCHTTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc---C--CCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccccchhHHHHHHHHH
Confidence 333456666666654443 1 2233444555667777787777 4556778887655544433 233444444444
Q ss_pred HHHHHHHHHHHHHHH----------HhhcC--CCCcchHHHHHHhhHHHHHHHHHHHHHhhhc
Q psy15599 1329 EAIIESSCSMIKTAK----------SLAVS--PKDRPTWKLLADHSKQVSDSIKRLVTSIRDV 1379 (2347)
Q Consensus 1329 k~i~~ss~~ll~tAk----------~la~~--P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~ 1379 (2347)
.-+.++-.-|..+.+ .|+.+ ...|....+|-..+|+|+|.+++|++.|...
T Consensus 87 q~l~ds~qiL~~~~q~Ld~~~Wsl~~La~~k~~~~~DdLDrfVmvaR~vpdD~kqlas~I~~N 149 (159)
T PF08824_consen 87 QPLEDSYQILLQTSQALDSCNWSLDVLARDKPQNKPDDLDRFVMVARTVPDDAKQLASFIQGN 149 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSHHHHTT--SS-TCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHhcCCCCCCcchHHHHHHHHHhchHHHHHHHHHHHhh
Confidence 444443333333322 23332 2367889999999999999999999977653
No 140
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=66.40 E-value=21 Score=38.58 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=53.4
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcCc-----EEEEechHHHHHHHHHHHHHH
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSDN-----YYSVQTTEAEQIQQLIAGYID 404 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~~-----~f~~~T~q~k~I~~LI~gYi~ 404 (2347)
+++++-+-..-+.++||.++..|.+||...|+-|++.. +.|-+.-.+.... .|.|.+ .++.|..-+.+.+.
T Consensus 53 k~~~m~L~~g~lkLiDP~~~s~LhSqPI~~IRvwGvGrdngrdFA~vard~~T~~~~CHVFRC~~-pak~ia~~l~~~c~ 131 (138)
T cd01272 53 KDLFMDLDEGALKLIDPENLTVLHSQPIHTIRVWGVGRDNGRDFAYVIRDERTRGSNCHVFRCDT-RAKDIATELRRICR 131 (138)
T ss_pred ceeEEEecCCceEeeCCCCCceEEeeeeeEEEEEEecCCCCcceEEEeecCCCceeEEEEEEcCC-CCccchHHHHHHHH
Confidence 46777778778899999999999999999999999864 4566665554332 455543 36667666666664
Q ss_pred HHH
Q psy15599 405 IIL 407 (2347)
Q Consensus 405 l~l 407 (2347)
-+|
T Consensus 132 ~~m 134 (138)
T cd01272 132 HPM 134 (138)
T ss_pred hhh
Confidence 444
No 141
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=65.34 E-value=14 Score=36.21 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=47.0
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+-..++.+.|+.+|.++-..|.++.... -++++.-|+. .|.-|..+.+|..|++.+|+.+++.
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i~--~~~~~q~L~~------~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGCD--YPPEQQKLIY------SGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCC--CChhHeEEEE------CCEEccCCCCHHHcCCCCCCEEEEE
Confidence 3566899999999999999999876541 0235555554 2556788889999999988877653
No 142
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=65.29 E-value=8.7 Score=37.94 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=48.1
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+.+.++.++++++|.++-.+|.+....+ ++..-|+.. +.-|+..++|.+|++++++.+++..
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip----~~~q~L~~~------G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMP----AGKQKLQYE------GIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCC----HHHEEEEEC------CEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4567899999999999999998876543 456666652 3347778999999999999887544
No 143
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=64.90 E-value=33 Score=36.18 Aligned_cols=48 Identities=23% Similarity=0.191 Sum_probs=40.8
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
....+.|..++|....+.|+++.||.++-..|..+.||+. +.+.|++.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~-~~QrLi~~ 73 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPV-AQQHLIWN 73 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh-HHEEEEEC
Confidence 3567889999999999999999999999999999999754 45677654
No 144
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.86 E-value=14 Score=38.67 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=49.0
Q ss_pred ecCCceEEEeCCccceeeeeeccccceeeeeC------ceEEEEeCCCcCcEEEEechHHHHHHHHHHHHH
Q psy15599 339 VTKDSVLRLDERTKEIMKTWPLTTVRRWGASS------NVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYI 403 (2347)
Q Consensus 339 I~~~GI~ild~~tkevl~~~~~~~I~~w~~~~------~~f~I~~~d~~~~~f~~~T~q~k~I~~LI~gYi 403 (2347)
|+-.|+-+|+...-+-...+||++|....++- +.|.|..... +.|.|.+.+...|...|..|+
T Consensus 29 iGDkgfEFYn~~nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~--gk~~FaSkdsg~iLk~ir~yv 97 (122)
T COG4687 29 IGDKGFEFYNDRNVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQ--GKVRFASKDSGKILKKIREYV 97 (122)
T ss_pred EcccceeecCCCChhheeEecHHHhheeheeehhhhhcceEEEEEcCC--ceEEEEeCCchhHHHHHHHHh
Confidence 34557777776666666789999999777652 5788887633 489999999999999999996
No 145
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=64.04 E-value=24 Score=35.65 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=43.6
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
.+|+.+ +|..+.+.+.++.+..++...|++++++.+...|.|.|.+++++
T Consensus 2 ~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd 51 (82)
T cd06407 2 RVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEE 51 (82)
T ss_pred EEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCC
Confidence 467776 66799999999999999999999999997768999999988654
No 146
>KOG4239|consensus
Probab=63.58 E-value=8.6 Score=46.80 Aligned_cols=49 Identities=6% Similarity=0.249 Sum_probs=43.3
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEecCCc
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVRENPED 138 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~~~~ 138 (2347)
-.||+|-.+.+.|.|++++|+.+|+..+.+++-+.+ +..|+||+....+
T Consensus 206 TSfflPa~svk~vrInStttt~eVI~~LLkKF~Ved~P~kFALy~~~~~g 255 (348)
T KOG4239|consen 206 TSFFLPADSVKNVRINSTTTTREVIKLLLKKFRVEDNPQKFALYERHESG 255 (348)
T ss_pred eeeecccccceeEEecccccHHHHHHHHHHHHeecCCHhheeeeEEeecC
Confidence 458888779999999999999999999999999975 7999999986643
No 147
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=63.48 E-value=23 Score=38.44 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=53.8
Q ss_pred CCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeee------CceEEEEeCCCc---Cc--EEEEechHHHHH
Q psy15599 327 KGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS------SNVFTLDFGDYS---DN--YYSVQTTEAEQI 395 (2347)
Q Consensus 327 ~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~------~~~f~I~~~d~~---~~--~f~~~T~q~k~I 395 (2347)
+|+-+..+.+|-|+...|.++|..||+.+..||++.|..-.+- ++-+.|.+.+.. .. .|.|..-.+..|
T Consensus 36 ~G~iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~~~~~~ynslL~~vvq~~~~~~~e~hlFQc~~v~A~~i 115 (127)
T cd01210 36 QGRVWSQKMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAFTSMELYNSILLFVVQEPGGSRTEMHIFQCQRVGAEHL 115 (127)
T ss_pred cCCccccceEEEEcCCeEEEEcCCCcChhhcCCHhhccccceecCCCCcCceEEEEEeCCCCCCCcEEEEEeccccHHHH
Confidence 4555667889999999999999999999999999999876542 256777775442 12 455555556666
Q ss_pred HHHHHHH
Q psy15599 396 QQLIAGY 402 (2347)
Q Consensus 396 ~~LI~gY 402 (2347)
..=|..+
T Consensus 116 ~~DL~~a 122 (127)
T cd01210 116 VEDLQQA 122 (127)
T ss_pred HHHHHHH
Confidence 5544444
No 148
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=63.13 E-value=44 Score=45.20 Aligned_cols=73 Identities=12% Similarity=0.259 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDE 1402 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~ 1402 (2347)
++......+..+-..|+.+|.|+..++.+...++.+.+.+|++-..+.+. .-=..+.+..+.+||+++.+|..
T Consensus 116 gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~ 189 (507)
T PRK07739 116 GLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISD 189 (507)
T ss_pred hHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666788999999999999999999999999999999999998877773 33447788888889888766665
No 149
>KOG4239|consensus
Probab=62.96 E-value=7.1 Score=47.48 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=65.7
Q ss_pred EEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcc---ccccccCCchhhhhccCCccccc
Q psy15599 7 KICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKK---GVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 7 ~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k---~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
.++++-. ..|.+++...|+..+|++.+..||... .++.+||||....-..+ .+-...+.+|-. .|.-
T Consensus 207 SfflPa~-svk~vrInStttt~eVI~~LLkKF~Ve--d~P~kFALy~~~~~geqv~~~kLkd~d~PL~~-------RLLq 276 (348)
T KOG4239|consen 207 SFFLPAD-SVKNVRINSTTTTREVIKLLLKKFRVE--DNPQKFALYERHESGEQVKLTKLKDDDYPLIL-------RLLQ 276 (348)
T ss_pred eeecccc-cceeEEecccccHHHHHHHHHHHHeec--CCHhheeeeEEeecCchhhheecccccccHHH-------HHHh
Confidence 3555555 788999999999999999999999988 58999999997765443 222223445443 2334
Q ss_pred cccceeEEEEeCCCcEEEEEEc
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVD 105 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd 105 (2347)
-|-.+..+|+|++....+|.+|
T Consensus 277 GP~ek~~~~vLmEnD~gEV~wd 298 (348)
T KOG4239|consen 277 GPSEKILSFVLMENDTGEVLWD 298 (348)
T ss_pred CcchhhhheeEeccCcceeeee
Confidence 6667778899998887788777
No 150
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=61.67 E-value=18 Score=36.87 Aligned_cols=69 Identities=10% Similarity=0.163 Sum_probs=52.6
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.|.|.+ .+.+.++++.++.++..++..+.++...+ ++..-|++ .|.-|.+..|++.|++.+++.++..
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~----~~~~rf~f------~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS----MNSVRFLF------DGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC----ccceEEEE------CCeECCCCCCHHHcCCCCCCEEEEE
Confidence 3444433 35778899999999999999999986554 45555555 2456888899999999999988754
No 151
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.12 E-value=48 Score=43.88 Aligned_cols=74 Identities=11% Similarity=0.272 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++......+..+-..++.+|.|+..++.+...+..+.+.+|.+-..+.+. .--..+.+..+.+||.++.+|...
T Consensus 109 gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~L 183 (431)
T PRK06799 109 SLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEA 183 (431)
T ss_pred chHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666788999999999999999999999999999999999998877663 334467888888898887777654
No 152
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=60.85 E-value=26 Score=35.10 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=38.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
-.|.|+||||+.....+..+.|+++|...|-.+.+-.....|.|...
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~ 51 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTA 51 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecC
Confidence 46889999999999999999999999999998765444466777654
No 153
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=60.31 E-value=17 Score=36.15 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=47.7
Q ss_pred EEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|.|... +...++.++|+.+|.++-..|.++.... ++..-|.. +|.-|... +|..|++.+|+.+++.+
T Consensus 3 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~----~~~qrL~~------~Gk~L~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 3 NLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP----KERLALLH------RETRLSSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred EEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC----hHHEEEEE------CCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence 3444332 4567899999999999999998876432 22222222 14457767 89999999999888765
Q ss_pred c
Q psy15599 86 K 86 (2347)
Q Consensus 86 ~ 86 (2347)
.
T Consensus 72 ~ 72 (78)
T cd01804 72 T 72 (78)
T ss_pred e
Confidence 3
No 154
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=59.93 E-value=2.2e+02 Score=31.13 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHHH
Q psy15599 616 GDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGES-QTNEMQDTLLSLAKAVANTTAALVL 694 (2347)
Q Consensus 616 ~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~-~~~e~~d~L~~~AkaVa~Ata~Lv~ 694 (2347)
+|.++.-+..+...+..||.+.+.. .+.....-+.++.-+..+|+....+. .. +.+-...+.+..++..|..
T Consensus 11 ~e~Vi~~TE~vTk~IqeLl~aAQ~~---~~~s~~pcae~I~~aV~~m~~LfP~~~~~----e~vr~~L~~L~~~~~~Lq~ 83 (123)
T PF12205_consen 11 TEDVIRRTEQVTKRIQELLRAAQEG---RHDSFAPCAERIRSAVTEMAALFPKDPRS----ETVRSSLRQLTSSAYRLQA 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTS-SSB------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhHHHHHHHHHHHHHHhCCCccCC----hHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776642 24445556777777777777654221 22 2344455566677777766
Q ss_pred HhhcccCCCC----hhhhHHHHHHHHHHHHHHHHHHHH
Q psy15599 695 KAKSVASTLP----PNQQTSVITSATKCALATSQLVAC 728 (2347)
Q Consensus 695 ~ak~~~~~~~----~~~q~~li~aA~~~a~ats~Lv~~ 728 (2347)
..+......+ ...-+.++..|-.+|.|+-+||.+
T Consensus 84 eC~~~~~~~~~~~~~~~t~qvi~~AYdIAKAaKqLvT~ 121 (123)
T PF12205_consen 84 ECQKAQPEDDAVDIQLVTQQVIQCAYDIAKAAKQLVTI 121 (123)
T ss_dssp HHHS---S--SS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6555443222 111246777777777777777754
No 155
>PF14470 bPH_3: Bacterial PH domain
Probab=59.48 E-value=49 Score=33.69 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=47.8
Q ss_pred ceeEEEEecCCceEEEeCC--ccceeeeeeccccceeeeeC----ceEEEEeCCCcCcEEEEechHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDER--TKEIMKTWPLTTVRRWGASS----NVFTLDFGDYSDNYYSVQTTEAEQIQQLI 399 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~--tkevl~~~~~~~I~~w~~~~----~~f~I~~~d~~~~~f~~~T~q~k~I~~LI 399 (2347)
..+.++.++.++|+++... .+.....|||.+|.++.... ..++|.+++..-..-.+...+.+.+..+|
T Consensus 21 ~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~~~~~~i~~i~k~~~~~~~~~i 94 (96)
T PF14470_consen 21 SFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETNGEKIKIDNIQKGDVKEFYEYI 94 (96)
T ss_pred CceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEECCEEEEEEEcCHHHHHHHHHHH
Confidence 3467899999999999875 35677899999999999875 78888885442112223444555555444
No 156
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=59.10 E-value=57 Score=44.34 Aligned_cols=77 Identities=12% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEVAML 1406 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~s~~ 1406 (2347)
+++.....+...-+.++.+|+++.+++.+...+..++++||.+=..+++. --=..|....+.+||+++.+|....-.
T Consensus 108 sl~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~q 185 (552)
T COG1256 108 SLSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQ 185 (552)
T ss_pred cHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577888999999999999999999999999999999987777663 344578999999999998888875443
No 157
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=58.84 E-value=18 Score=36.67 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=41.8
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccC
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPG 67 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~ 67 (2347)
.-+||+..| +..|++-++..|++++||..+.+|.... +-.+++|+-.-.+-+=.|-++.+
T Consensus 3 ~vvkv~~~D-g~sK~l~V~~~~Ta~dV~~~L~~K~h~~---~~~~W~LvE~~P~l~lER~~EDH 62 (85)
T cd01787 3 QVVKVYSED-GASKSLEVDERMTARDVCQLLVDKNHCQ---DDSSWTLVEHLPHLQLERLFEDH 62 (85)
T ss_pred eEEEEEecC-CCeeEEEEcCCCcHHHHHHHHHHHhCCC---CCCCeEEEEecchhhhhhhccch
Confidence 346888866 5899999999999999999999997665 34555666533332223344443
No 158
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=56.11 E-value=50 Score=32.95 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=36.7
Q ss_pred eEEEEeCCCcE-EEEE-EcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTL-KTLL-VDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~-~~v~-Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.|.|..++|.. .++. ++++.||.++-..|..+.|++. +.+.|++.
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~-~~QrLi~~ 48 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEP-ECQRLFYR 48 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCH-HHeEEEeC
Confidence 47789999987 5785 8999999999999999999754 56677654
No 159
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=55.97 E-value=49 Score=31.83 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=36.0
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.|+.. |...++.++.+.|+.++-..|+...|++. +.+.|++.
T Consensus 2 ~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~ 45 (71)
T cd01812 2 RVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEP-RDQKLIFK 45 (71)
T ss_pred EEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCCh-HHeEEeeC
Confidence 5678875 88899999999999999999999999843 45666543
No 160
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=55.86 E-value=73 Score=40.55 Aligned_cols=74 Identities=14% Similarity=0.270 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAP-GQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aP-GQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++......+..+-..++.+|.++..++.+...++.+++.+|.+-..+....- =..+.+..+.+||.++.+|-..
T Consensus 104 gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~l 178 (322)
T TIGR02492 104 GLSTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASL 178 (322)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678889999999999999999999999999999999999887776433 2367788888888887666653
No 161
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=53.66 E-value=70 Score=32.60 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=37.5
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
.-.|.|+||||+.+.-.+..+.|+++|..-|-. .+- .++.|.|...-+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~-~~~~f~L~t~FP 51 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKE-TPEKFQIVTNFP 51 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCC-CCCcEEEecCCC
Confidence 456889999999999999999999999999943 222 346788866433
No 162
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=53.45 E-value=5.4e+02 Score=32.05 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhHHHHHHHhhhcCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhh
Q psy15599 1218 TAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSL 1297 (2347)
Q Consensus 1218 ~~a~~ia~~t~~l~~~c~~as~~~~n~~~~~~~~~~ak~v~~at~~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l 1297 (2347)
.....+-.....++..|- ...+..-|..++.|...+++|-+++.+|++.+.......++.........++.+-+|.+.|
T Consensus 35 ~~~~~~~~~l~~l~~~~~-~~~~~~G~tL~~~i~~~v~~lv~~~~~L~~~~~~~~~s~~~~~~~~~~~~tG~VWeaCd~l 113 (275)
T PF13324_consen 35 ELCESLFNALLGLLSLYH-GLPKGQGPTLRKEIRSAVKSLVDSSIQLVEELVSAYGSSSQSEKNEVLQSTGRVWEACDQL 113 (275)
T ss_dssp HHHHHHHHHHHHHHHHHT-TS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh-hCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCccchhHHHHhHHHHHHHHH
Confidence 333444455666666664 3445556778888888888888888888877665333344444444444555555555544
Q ss_pred h-----------------------------hcc-------Cchhhhhc--------ccccCch--hhhhHHHHHHHHHHH
Q psy15599 1298 V-----------------------------SFA-------YSPEFVNR--------SSHFGDS--TLTAQEPILSAGEAI 1331 (2347)
Q Consensus 1298 ~-----------------------------~~a-------s~~efa~~--------~~~is~~--~~~~q~~iv~~~k~i 1331 (2347)
. -+. +..+|... ...+..+ --+...+++..+..+
T Consensus 114 ~~lp~~n~~av~~~~~~~~~lvkDa~~El~E~~~~~~~~~~~d~~~d~~~~ddd~~~~~~~~d~~~seee~~~~~~~~~l 193 (275)
T PF13324_consen 114 KKLPKDNKVAVLRRLKQSRDLVKDALEELEEWDEEPSLDDSEDEFSDEEDDDDDEDDDDFGDDEDLSEEEMELAKAVLGL 193 (275)
T ss_dssp TTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------------------------TTS--HHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccccccccccCCHHHHHHHHHHHHH
Confidence 2 111 11111110 0000011 012334456666666
Q ss_pred HHHHHHHHH----HHHHhh------cCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHHHH
Q psy15599 1332 IESSCSMIK----TAKSLA------VSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQ--KECDQAIEAISSRLRE 1399 (2347)
Q Consensus 1332 ~~ss~~ll~----tAk~la------~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aPGQ--kECd~Ai~~l~~~i~~ 1399 (2347)
...+..+++ +.+... ..|........|...++.+++.|..|+.++= |-| .++...+..|..++..
T Consensus 194 ~~~~~~~lk~~~~~i~~~~k~~~~~~~~~~v~~Ld~L~~~~~~i~~~VDel~~slY---pP~d~~~v~~~~~~L~~~l~~ 270 (275)
T PF13324_consen 194 LKASLAVLKKLLRAITKLLKSEKPSDSPEQVAQLDKLLDLCQEISPSVDELASSLY---PPQDPDEVRAAAAKLSSVLKK 270 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHHHHHHHHHS---SS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccChhhHHHHHHHHHHHHHhhhHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHH
Confidence 555544443 222221 1233334456678899999999999999887 433 7788888888776654
Q ss_pred H
Q psy15599 1400 L 1400 (2347)
Q Consensus 1400 l 1400 (2347)
+
T Consensus 271 ~ 271 (275)
T PF13324_consen 271 M 271 (275)
T ss_dssp H
T ss_pred H
Confidence 4
No 163
>cd01204 IRS_PTB Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). This domain has a PH-like fold and is found in insulin receptor substrate molecules. IRS molecules have an N-terminal PH domain , which is followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs in the insulin receptor, IGF-I receptor and the IL-4 receptor.
Probab=53.39 E-value=1.4e+02 Score=31.04 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=49.6
Q ss_pred eEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHH
Q psy15599 334 PRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGY 402 (2347)
Q Consensus 334 ~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gY 402 (2347)
..-|.+..+.+.++..+...+-..+.|..|++.+...+.|.|++|... .+.+-+++.++- |.+-|..-
T Consensus 23 ~yrlcLt~~~l~lv~l~~~~~~v~l~L~~IRRCGHs~~~Ff~E~GRsa~tG~GElWMq~dD~~-vAqnmHe~ 93 (104)
T cd01204 23 VYRLCLTSKTLSFVKLNSEVASVELLLMNIRRCGHSENFFFIEVGRSAVTGPGELWMQVDDAV-VAQNMHET 93 (104)
T ss_pred eEEEEEccceeEEEEcCCCCccEEEeeeeeeeccCcccEEEEEecccccCCCCcEEEEcchHH-HHHHHHHH
Confidence 345677778787777665555567999999999999999999998654 247888888754 44433333
No 164
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=52.81 E-value=49 Score=32.85 Aligned_cols=48 Identities=19% Similarity=0.413 Sum_probs=41.5
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCc
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPED 138 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~ 138 (2347)
.++|++ +|..+.+.++...+-.++...|+.++++.. ..|.|.|.++++
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedg 50 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDN-QSFTLKYQDEDG 50 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCC-CCeEEEEECCCC
Confidence 578887 788999999999999999999999999865 679998886543
No 165
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=52.77 E-value=72 Score=32.12 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=37.2
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
-.|.|+||||+...-.+..+.+.++|...|-.+ |-. +..|.|+..-+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~-~~~f~L~t~fP 51 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP-IDEYKLLSSWP 51 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC-CCCEEEecCCC
Confidence 468899999999999999999999999999653 432 35787775543
No 166
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=52.59 E-value=35 Score=35.85 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=39.3
Q ss_pred EEEEecCC---eeEEEEecCCCcHHHHHHHHHhhcCccc-CCCccccccccccCC
Q psy15599 7 KICIVDRN---VTKTMQFDPSTSVYDACRIIRDKISEAN-FGEAKDYGLFLSDGD 57 (2347)
Q Consensus 7 ~v~~~~~~---~~kt~~f~~~~~v~~~~~~i~e~~~~~~-~~~~~dyglf~~~~~ 57 (2347)
+.++.|.+ .+|.+++..+|+..+|+..+.+|+.... +-++.+|+||...+.
T Consensus 25 rf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~n 79 (112)
T cd01782 25 RFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHEN 79 (112)
T ss_pred EEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecC
Confidence 45554443 7899999999999999999999998541 123459999997664
No 167
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=52.24 E-value=30 Score=34.74 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=44.7
Q ss_pred eEEEEEEecCC-eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhh--ccCCcc
Q psy15599 4 LSLKICIVDRN-VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYI--LRNGDE 80 (2347)
Q Consensus 4 ~~L~v~~~~~~-~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~--l~~~~~ 80 (2347)
++|.|.-.++. ...++.|+|+++|.++-.+|.+..+.. .+++.--|-. +|+-|....+|..|+ +.++..
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~--~~~~~QrLIy------~GKiLkD~~tL~~~~~~~~~~~t 73 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSK--PLEQDQRLIY------SGKLLPDHLKLRDVLRKQDEYHM 73 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCC--CChhHeEEEE------cCeeccchhhHHHHhhcccCCce
Confidence 44555544443 356777799999999999998866421 1112222222 477888899999996 555554
Q ss_pred cc
Q psy15599 81 LE 82 (2347)
Q Consensus 81 L~ 82 (2347)
+|
T Consensus 74 iH 75 (79)
T cd01790 74 VH 75 (79)
T ss_pred EE
Confidence 44
No 168
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=52.09 E-value=40 Score=35.03 Aligned_cols=41 Identities=10% Similarity=0.252 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCCCcHHHHHHHHHHHhCCCC--CCcceeEEecC
Q psy15599 96 DGTLKTLLVDDSQPVANLMVVICTKIGITN--HDEYSLVRENP 136 (2347)
Q Consensus 96 DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~--~e~FsL~~~~~ 136 (2347)
.-.++++.|+..+|+.+++.....++|+.+ ++.|.|....-
T Consensus 15 ~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~l 57 (97)
T cd01783 15 GVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLL 57 (97)
T ss_pred CcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEe
Confidence 345889999999999999999999999975 68999988754
No 169
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=51.40 E-value=78 Score=42.27 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++......+..+-..|+.+|.++..++.+...++.+.+.+|.+-..+.+. .-=-.+.+..+.+||.++.+|-..
T Consensus 104 gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~L 178 (456)
T PRK07191 104 SLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADY 178 (456)
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788999999999999999999999999999999999998776653 222356778888888887666553
No 170
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=51.08 E-value=8.2e+02 Score=33.49 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q psy15599 1923 TRALESTIEAIAQEIRALN 1941 (2347)
Q Consensus 1923 t~ale~~~~~I~~~~~~ld 1941 (2347)
...|...+..+...+..|.
T Consensus 496 a~~l~~~a~~L~~~v~~fk 514 (553)
T PRK15048 496 AAALEEQASRLTQAVSAFR 514 (553)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666554
No 171
>KOG3878|consensus
Probab=50.26 E-value=41 Score=41.18 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCcCCHHHHHHHHhHHHhhhcCCCCCCCC-CCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q psy15599 233 THPVTQDLACQLAGIQTHIQFGDYNPSKH-KPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRS 311 (2347)
Q Consensus 233 ~~p~see~ai~LAALqlQie~GD~~~~k~-~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rs 311 (2347)
-++++.|+-++|-||.-|+.+|.|+++.. ..+++++ + -+...++|+.|-.+|+.+|+..|+.++-+
T Consensus 50 a~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv---~----------GnDr~~~W~~LG~~sre~AM~~FV~Lldr 116 (469)
T KOG3878|consen 50 AIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDV---I----------GNDRQQHWQLLGEISREQAMEGFVDLLDR 116 (469)
T ss_pred ccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeec---c----------cChHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 37889999999999999999999986542 2333332 1 23445789999999999999999998854
Q ss_pred -CCCCC
Q psy15599 312 -LPTYG 316 (2347)
Q Consensus 312 -lp~YG 316 (2347)
++.|-
T Consensus 117 ~C~~F~ 122 (469)
T KOG3878|consen 117 MCSAFR 122 (469)
T ss_pred cchhhh
Confidence 45554
No 172
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=49.81 E-value=38 Score=31.47 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=36.5
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.|+.++ ....+.|+.+.|+.++-..|+.+.|++. +.+.|++.
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~-~~~~L~~~ 45 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPV-EQQRLIYK 45 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEEC
Confidence 47889998 6888999999999999999999999853 45666543
No 173
>KOG3751|consensus
Probab=49.39 E-value=69 Score=42.00 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=51.2
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCc----hhhhhccCCc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRN----LEYYILRNGD 79 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~t----L~~y~l~~~~ 79 (2347)
+.+|||..|+ ..|.+-++.+|+.++||..+.+|.-.. +-.+++|+--..+=+-.|-++.+.. |..+..-.+.
T Consensus 189 lvVKvfseDg-asksL~Vder~tardV~~lL~eKnH~~---~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseN 264 (622)
T KOG3751|consen 189 LVVKVFSEDG-ASKSLLVDERMTARDVCQLLAEKNHCA---DDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSEN 264 (622)
T ss_pred eeEEEEccCC-ceeeEeecccccHHHHHHHHHHhhhhh---cccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCc
Confidence 4567776554 899999999999999999999997665 3355565542222222333433222 2333455567
Q ss_pred cccccccce
Q psy15599 80 ELEYRRKMR 88 (2347)
Q Consensus 80 ~L~~~~~~r 88 (2347)
+++|+++.-
T Consensus 265 K~lF~k~~~ 273 (622)
T KOG3751|consen 265 KLLFRKNPA 273 (622)
T ss_pred eeEEeecch
Confidence 777776533
No 174
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=49.19 E-value=35 Score=33.67 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=49.8
Q ss_pred EEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 8 ICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 8 v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
|.|.=.+.+..+.|.++.+|.++-..|.++...+ ++.--|..+ .-+|.-+..+.+|..|++.+|..+.+
T Consensus 3 i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp----~~~QKLi~~---~~~Gk~l~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 3 VIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVL----PERQKLLGL---KVKGKPAEDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCC----HHHEEEEee---cccCCcCCCCcCHHHcCCCCCCEEEE
Confidence 3333367778899999999999999999987643 455455541 11355577889999999988876643
No 175
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=48.86 E-value=18 Score=35.93 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=41.3
Q ss_pred cCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 22 DPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 22 ~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
-++.+|.++-.+|.+++++.- .+++..-|-. .|+-|+..++|..|+++++..+++.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi-~~~dqQrLIy------~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSL-PDPELIDLIH------CGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCC-CChHHeEEEe------CCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 367899999999999975431 1234444433 25568999999999999999888654
No 176
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=48.83 E-value=85 Score=43.60 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++......+..+-..|+.+|.++..++.+...++.+.+.+|++-..+.+. .-=..+.+..+.+||.++.+|...
T Consensus 116 gl~~~l~~ff~al~~ls~~P~~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~L 190 (627)
T PRK06665 116 SLRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADL 190 (627)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666788999999999999999999999999999999999998887774 333467788888888887777654
No 177
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=48.10 E-value=4.4e+02 Score=29.51 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCHHHHHHHHHHH
Q psy15599 825 DAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQC---ASHPQDIMKQEALVTTV 901 (2347)
Q Consensus 825 ~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~---a~~p~d~~~q~~L~~AA 901 (2347)
.+++-+..-|.|+-.++.|+..+-..-..-++.. ++++--+=|.|..-..+||+++|.. ...+-+.+.++.+..++
T Consensus 33 ~~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~~s~-~~EVema~klL~~DM~eLi~~mklaq~~~~ttl~~eyrr~ml~aa 111 (139)
T PF03623_consen 33 KPEEYVDLVKNVGLALRDLLTSVDQILPSLPSSV-RREVEMAHKLLSKDMAELISAMKLAQQNSNTTLDEEYRRQMLSAA 111 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHGGGSHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3667788899999999999999986665543332 6666666789999999999988764 56667899999999999
Q ss_pred HHHHhh
Q psy15599 902 EELRQA 907 (2347)
Q Consensus 902 e~L~~A 907 (2347)
..|+.-
T Consensus 112 h~LA~d 117 (139)
T PF03623_consen 112 HVLAMD 117 (139)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999754
No 178
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=46.03 E-value=98 Score=34.91 Aligned_cols=74 Identities=8% Similarity=0.075 Sum_probs=48.4
Q ss_pred cceeEEEEecCCceEEEeCCcccee-----eee-eccccceeeeeC---ceEEEEeCCCcC---cEEEEechH-HHHHHH
Q psy15599 331 KLVPRLLGVTKDSVLRLDERTKEIM-----KTW-PLTTVRRWGASS---NVFTLDFGDYSD---NYYSVQTTE-AEQIQQ 397 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~~tkevl-----~~~-~~~~I~~w~~~~---~~f~I~~~d~~~---~~f~~~T~q-~k~I~~ 397 (2347)
++..++|-|+.+||.++|+.+++.+ ..| ++.+|.-+...+ +.|.....+... .++.|.+.+ ++.|..
T Consensus 43 ~~~~v~L~VS~~Girl~D~~t~~~~~~~~~~~f~~l~nISFCa~d~~~~r~F~FIak~~~~~~~~CHVF~s~~~~~~I~~ 122 (148)
T cd01212 43 TPQTCILEISDRGLRMVDRSGPNKDKKPCIDFFYSLKNISFCGFHPRDHRYFGFITKHPLLQRFACHVFKSSESTRPVAE 122 (148)
T ss_pred CCcEEEEEEecCcEEEEecCCCcccccchhhccccccceEEEEEcCCCCcEEEEEeccCCCCceEEEEEEeCCcchHHHH
Confidence 3457999999999999999988532 223 477776666654 567776655432 366776654 566666
Q ss_pred HHHHHHH
Q psy15599 398 LIAGYID 404 (2347)
Q Consensus 398 LI~gYi~ 404 (2347)
-|+-=.+
T Consensus 123 aIG~AF~ 129 (148)
T cd01212 123 AVGRAFQ 129 (148)
T ss_pred HHHHHHH
Confidence 5554433
No 179
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.99 E-value=32 Score=44.46 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=48.1
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.+.++.++++.+|.++-.+|.++.....+ +.++.-|++ +|+-|+.+++|..|++..++.+.+.
T Consensus 10 g~~~~IeV~~~~TV~dLK~kI~~~~g~~~i-p~~~QkLIy------~GkiL~Dd~tL~dy~I~e~~~Ivvm 73 (378)
T TIGR00601 10 QQKFKIDMEPDETVKELKEKIEAEQGKDAY-PVAQQKLIY------SGKILSDDKTVREYKIKEKDFVVVM 73 (378)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHhhCCCCC-ChhHeEEEE------CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 456789999999999999999887541111 345566666 3667888999999999888777654
No 180
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=45.23 E-value=40 Score=34.97 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=35.3
Q ss_pred CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCcccccccc
Q psy15599 13 RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFL 53 (2347)
Q Consensus 13 ~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~ 53 (2347)
.+..|.+++..+|+..+|+..+.+||... .++.+||||-
T Consensus 15 ~~s~k~v~IsS~tTt~eVI~~LL~KF~v~--~nP~kFALYe 53 (96)
T cd01778 15 KDTAKHLHISSKTTVREVIEALLKKFLVV--DNPRKFALFE 53 (96)
T ss_pred CCceeEEEEecCCcHHHHHHHHHHhheec--cCCcceEEEE
Confidence 46889999999999999999999999987 5788999994
No 181
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.20 E-value=1.2e+02 Score=40.85 Aligned_cols=74 Identities=11% Similarity=0.243 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++......+..+-..|+.+|.|+..++.+...+..+.+.+|.+-..+.+. .-=..+.+..+.+||.++.+|-..
T Consensus 99 gl~~~l~~ff~a~~~la~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~L 173 (483)
T PRK07521 99 SPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDA 173 (483)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566688999999999999999999999999999999999998877774 333467788888888876666543
No 182
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.11 E-value=1.1e+02 Score=42.96 Aligned_cols=73 Identities=11% Similarity=0.202 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAP-GQKECDQAIEAISSRLRELDE 1402 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aP-GQkECd~Ai~~l~~~i~~ld~ 1402 (2347)
+++.....+..+-+.++.+|.|+.+++.+...++.+.+.+|.+-..+.+.-- =..+.+..+.+||.++.+|-.
T Consensus 104 gls~~L~~Ff~alq~la~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~ 177 (676)
T PRK05683 104 GISPALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIAS 177 (676)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999887776432 336778888888877655544
No 183
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=44.24 E-value=51 Score=32.49 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=39.7
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEec
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVREN 135 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~ 135 (2347)
+++||||.+.-.|.+-+..++.|.+....++=||. ++....|...
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~-pe~C~V~~~~ 46 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQ-PECCAVFRLG 46 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC-hhHeEEEEcC
Confidence 78999999999999999999999999999998987 5667776663
No 184
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=44.23 E-value=85 Score=30.75 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=30.4
Q ss_pred CcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 97 GTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 97 G~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+...++.|+++.||.++-..|..+.|++. +...|++.
T Consensus 8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~Li~~ 44 (74)
T cd01793 8 QNTHTLEVTGQETVSDIKAHVAGLEGIDV-EDQVLLLA 44 (74)
T ss_pred CCEEEEEECCcCcHHHHHHHHHhhhCCCH-HHEEEEEC
Confidence 57889999999999999999999999854 45566654
No 185
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=43.35 E-value=1.2e+02 Score=41.98 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPG-QKECDQAIEAISSRLRELDE 1402 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aPG-QkECd~Ai~~l~~~i~~ld~ 1402 (2347)
+++.+..++..+-..++.+|.|+.+++.+...++++.+.+|.+-..+.+.--+ ..+.+..+.+||.++.+|-.
T Consensus 107 gls~~L~~Ff~alq~la~~P~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~ 180 (626)
T PRK08871 107 KIPENLNEWFDAVKTLADSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRD 180 (626)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666789999999999999999999999999999999999998877775332 36677788888877655554
No 186
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=42.91 E-value=4.1e+02 Score=29.15 Aligned_cols=107 Identities=11% Similarity=0.210 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy15599 967 ELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARS 1046 (2347)
Q Consensus 967 ~L~~aA~~L~~a~~~lv~~~~~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa 1046 (2347)
++..-+..++..+.+++.+... .....|+.....+..++.+|+.-.++......+-..++.+...+.+|-..++.
T Consensus 13 ~Vi~~TE~vTk~IqeLl~aAQ~-----~~~~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~~~~~Lq~eC~~ 87 (123)
T PF12205_consen 13 DVIRRTEQVTKRIQELLRAAQE-----GRHDSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTSSAYRLQAECQK 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cccccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444556666667777776621 12456777777888888888886554334457778888888888888888877
Q ss_pred hcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1047 AALDP---SASNSKSQLSAAARNVADSINNLLNIC 1078 (2347)
Q Consensus 1047 ~~~~p---~d~~a~~qL~~aAr~l~~sin~Lv~a~ 1078 (2347)
.++.- ..+-..++.-+||=.++-+..+||+.-
T Consensus 88 ~~~~~~~~~~~~~t~qvi~~AYdIAKAaKqLvT~~ 122 (123)
T PF12205_consen 88 AQPEDDAVDIQLVTQQVIQCAYDIAKAAKQLVTIF 122 (123)
T ss_dssp ---S--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65432 235567788899999999999999854
No 187
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=42.74 E-value=81 Score=42.51 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=44.7
Q ss_pred EEEEEEEccCCCCcceeEEEEecCCceEEEeCCcc-----ceeeeeeccccceeeeeC---ceEEEEeCCCc-CcEEEEe
Q psy15599 318 TFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTK-----EIMKTWPLTTVRRWGASS---NVFTLDFGDYS-DNYYSVQ 388 (2347)
Q Consensus 318 t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tk-----evl~~~~~~~I~~w~~~~---~~f~I~~~d~~-~~~f~~~ 388 (2347)
.-|.|..+.+. ....++.|||.-+.|+|+...++ .-..+|+++.|....... ..|.|.+.... ...|-|+
T Consensus 433 k~y~V~r~~~m-~~~~er~L~IdgdyihI~p~~~~~~~~~~Kt~s~~~~~Vv~ck~s~k~p~~Fkivv~~~~~~KrydfE 511 (523)
T PF05422_consen 433 KSYTVWRKQPM-RFKTERQLGIDGDYIHIMPSESKKFWDRGKTTSIHISSVVGCKVSRKHPANFKIVVYKNSESKRYDFE 511 (523)
T ss_dssp EEEEEEEEECT-TEEEEEEEEE-SSEEEEE------SB---S-EEEEGGGEEEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEeecc-CCCcceEEEEeCCEEEEecCCCCccccCCCceEEehhHeEEEEEcccCCceEEEEEEcCCCcccceee
Confidence 56677644222 23568999999999999954322 123578888888777654 67888874322 2357777
Q ss_pred chHHHH
Q psy15599 389 TTEAEQ 394 (2347)
Q Consensus 389 T~q~k~ 394 (2347)
..-+.+
T Consensus 512 a~sa~~ 517 (523)
T PF05422_consen 512 ADSAPE 517 (523)
T ss_dssp E-HHHH
T ss_pred CCCchh
Confidence 654433
No 188
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=42.65 E-value=32 Score=35.62 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=46.3
Q ss_pred eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhhhccCCcccccc
Q psy15599 15 VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 15 ~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y~l~~~~~L~~~ 84 (2347)
-.|++.+.|+.+|+++-.+|-.++..+ +.+--||. . |.-|.. .+||..|++.++..|.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~----P~dQkL~~----d--G~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVA----PFDQNLSI----D--GKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCC----cccceeee----c--CceeccCCccHHhcCCCCCCEEEEE
Confidence 468899999999999999999988776 34445665 2 335654 999999999888776643
No 189
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=42.27 E-value=1.3e+02 Score=42.13 Aligned_cols=73 Identities=8% Similarity=0.203 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAP-GQKECDQAIEAISSRLRELDE 1402 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aP-GQkECd~Ai~~l~~~i~~ld~ 1402 (2347)
+++.....+..+-..++.+|.|+..++.+...++++.+.+|.+-..+.+.-- -..+.+..+.+||.++.+|-.
T Consensus 105 gls~~L~~Ff~alq~la~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~ 178 (651)
T PRK06945 105 GLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQ 178 (651)
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678899999999999999999999999999999999999887777432 336678888888887666554
No 190
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=42.25 E-value=1.2e+02 Score=42.38 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAP-GQKECDQAIEAISSRLRELDEVA 1404 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aP-GQkECd~Ai~~l~~~i~~ld~~s 1404 (2347)
++......+..+-..++.+|.++..++.+...++.+.+.+|.+-..+.+.-- =..+.+..+.+||.++.+|-...
T Consensus 104 gls~~l~~ff~a~q~la~~P~~~~~Rq~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN 179 (649)
T PRK12715 104 SISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVN 179 (649)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677779999999999999999999999999999999999999887776432 33667778888888776665543
No 191
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=41.13 E-value=42 Score=31.70 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=45.2
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+....+.+.++++|.++...|.+.+.. +++...|++. +.-|....+|..|++.++..+++
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~----~~~~~~l~~~------g~~l~d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGV----PPEQQRLIYA------GKILKDDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCc----ChHHEEEEEC------CcCCCCcCCHHHCCCCCCCEEEE
Confidence 445578999999999999999988753 3566666541 23467788999999988877764
No 192
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=40.11 E-value=1.1e+02 Score=28.90 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=33.7
Q ss_pred EEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 92 VRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 92 V~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
|+..+|....+.++.+.|+.++-..|.+..|+.. +...|++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~-~~~~l~~ 42 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPP-EQQRLIY 42 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcCh-HHEEEEE
Confidence 6677899999999999999999999999999754 3455533
No 193
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.99 E-value=1.5e+02 Score=41.04 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++......+..+-..|+.+|.++..++.+...++++.+.+|.+-..+.+. .-=..+....+.+||.++.+|-..
T Consensus 109 gl~~~l~~ff~al~~ls~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~L 183 (613)
T PRK08471 109 GILKDLQDYFNAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEI 183 (613)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677888999999999999999999999999999999998877764 333367778888888877666553
No 194
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=39.79 E-value=1e+02 Score=31.61 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=40.2
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
..++|++ +|..+.+.|.++.+-.+++..|.+++|+. ..|.|.+.++
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDD 48 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcC
Confidence 4678886 56689999999999999999999999996 5899988876
No 195
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=38.76 E-value=40 Score=35.55 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=47.6
Q ss_pred cceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcc-cCCCcc-ccccccccCCCccccccccCCchhhhh
Q psy15599 2 ATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEA-NFGEAK-DYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 2 ~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~-~~~~~~-dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
..+-+.|++.+.+...+++++++.++.+++..+..+.... ...+.. ||-|-+ -....+|..+.+|..|.
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV----~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKV----CGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEE----TTSSEEE-SSS-GGGBH
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEe----cCceEEeeCCeeeeccH
Confidence 3566778888889999999999999999999888772111 112334 788877 44456777777777765
No 196
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=38.29 E-value=4.5e+02 Score=31.45 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHH
Q psy15599 966 QELSSAATGLSETTNEVISSVK---NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLS 1042 (2347)
Q Consensus 966 ~~L~~aA~~L~~a~~~lv~~~~---~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~ 1042 (2347)
.+...--..|..++..++.+.. -|.-.+..+|-+.-.-.+||-.|-.+.......+.+.+|+..+-.+...--.++.
T Consensus 94 ~q~~~~~~~L~~AId~F~~sv~~nQPP~iFv~~sK~VIl~ahkLVfiGDTl~r~~~~~dvr~~v~~~s~~Lc~~LK~~v~ 173 (210)
T PF12026_consen 94 EQCRLHFGALQKAIDAFFSSVSNNQPPKIFVAHSKFVILSAHKLVFIGDTLCREAQSADVRNEVLCSSNQLCDLLKTLVL 173 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcCcEEEEEeeeeeeeccHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555667777777766642 3445688888888889999999999999999999999999999999988888888
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1043 TARSAALDPSASNSKSQLSAAARNVADSINNLLNI 1077 (2347)
Q Consensus 1043 ~aKa~~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a 1077 (2347)
+.|.++-.=-++.+-+-+..++..|+..-.+++..
T Consensus 174 aTK~AAl~yPs~~AlqeMvd~v~eLs~~A~qfr~~ 208 (210)
T PF12026_consen 174 ATKKAALQYPSPSALQEMVDRVKELSQHAQQFRTT 208 (210)
T ss_dssp HHHHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887765555666666667777777666666553
No 197
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=38.23 E-value=1.6e+02 Score=33.51 Aligned_cols=92 Identities=10% Similarity=0.146 Sum_probs=64.6
Q ss_pred chhhhhhHHHHHHHHhhhhhHHhhhh---hhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhc------c-----C-C-CC
Q psy15599 1659 VKSMSGLSSQLTHQYSKLCTDCIGAV---ASASNPEVSGRLCGAVHDLGTACINTVTMAATC------Q-----T-S-GD 1722 (2347)
Q Consensus 1659 ~~~l~~~~~~~s~~~~~l~~~a~~a~---~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~------~-----~-~-~d 1722 (2347)
..+|...+..+-.....+..-|+|++ ...+|..+..+|+.+.+.|.++-..|..+.... . . + ..
T Consensus 42 i~~Ir~a~~~v~~sl~~fl~FArga~~NA~~~~D~~L~~kL~~qLq~l~ds~qiL~~~~q~Ld~~~Wsl~~La~~k~~~~ 121 (159)
T PF08824_consen 42 INEIRAAVDRVRASLREFLDFARGALANASNLSDRNLQAKLRRQLQPLEDSYQILLQTSQALDSCNWSLDVLARDKPQNK 121 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHTT--SS-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhcCCCCCC
Confidence 33444455555555556666666665 556677799999999999999998888644332 1 1 1 24
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy15599 1723 DYTHREFADTNRVLAEKVSQVLYALQAG 1750 (2347)
Q Consensus 1723 ~~t~~~l~~~ar~v~e~v~~l~aal~~g 1750 (2347)
+.....+.-++|.|-|-++++.+.|+..
T Consensus 122 ~DdLDrfVmvaR~vpdD~kqlas~I~~N 149 (159)
T PF08824_consen 122 PDDLDRFVMVARTVPDDAKQLASFIQGN 149 (159)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHhchHHHHHHHHHHHhh
Confidence 5568899999999999999999998653
No 198
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=38.13 E-value=66 Score=32.07 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=52.3
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccc-cccccCCchhhhhccCCccc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKG-VWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~-~WL~~~~tL~~y~l~~~~~L 81 (2347)
...|+|+++++. ....+|.++-+|.++...|....... ....|-|.- .. |++. .+.. +++|...++.+...|
T Consensus 6 ~~~I~vRlpdG~-~l~~~F~~~~tl~~l~~~v~~~~~~~---~~~~f~L~~-~~-Pr~~l~~~~-~~tl~e~~l~p~~~l 78 (82)
T PF00789_consen 6 VVRIQVRLPDGS-RLQRRFPKSDTLQDLYDFVESQLFSP---EESDFELIT-AF-PRRELTDED-SKTLEEAGLLPSATL 78 (82)
T ss_dssp EEEEEEEETTST-EEEEEEETTSBHHHHHHHHHHHHHCT---TTSSEEEEE-SS-STEECCSTT-TSBTCCCTTSSCEEE
T ss_pred EEEEEEECCCCC-EEEEEECCcchHHHHHHHHHHhcCCC---CCccEEEEe-CC-CCcCCCccc-cccHHHhcCCCCeEE
Confidence 356888898874 67899999999999999998877654 223477654 22 4332 2223 589999988777766
Q ss_pred cc
Q psy15599 82 EY 83 (2347)
Q Consensus 82 ~~ 83 (2347)
..
T Consensus 79 ~v 80 (82)
T PF00789_consen 79 IV 80 (82)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 199
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=37.64 E-value=95 Score=31.32 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=39.5
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPE 137 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~ 137 (2347)
.+||||-+ .+.|.+.+..+..++.+.|+++|+|+ .+.--|.|.+..
T Consensus 4 vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~ 49 (80)
T cd06406 4 VVKVHFKY--TVAIQVARGLSYATLLQKISSKLELP-AEHITLSYKSEA 49 (80)
T ss_pred EEEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEeccCC
Confidence 58899876 88999999999999999999999998 566777776553
No 200
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=37.63 E-value=6.3e+02 Score=28.33 Aligned_cols=116 Identities=18% Similarity=0.292 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy15599 616 GDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLK 695 (2347)
Q Consensus 616 ~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~~~~e~~d~L~~~AkaVa~Ata~Lv~~ 695 (2347)
+|.+.++.-.+..++..|-+..+... ....+...+.+|..+++|+..+.
T Consensus 8 ~D~Vy~at~~VVkaV~~Ls~~v~~~~---~~~y~~~VK~VG~~Lr~Ll~sVd---------------------------- 56 (139)
T PF03623_consen 8 NDKVYDATTGVVKAVMQLSNSVQTAK---PEEYVDLVKNVGLALRDLLTSVD---------------------------- 56 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTTSS---HHHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred cChHHHHHHHHHHHHHHHHhhhccCC---hHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 55666666666666666655544322 23355555666666665554432
Q ss_pred hhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15599 696 AKSVASTLPPNQQTSVITSATKCALATSQLVACTKVV---APTLENPACQQQLMAAVKEVANAVEGLVAMCN 764 (2347)
Q Consensus 696 ak~~~~~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~v---A~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~ 764 (2347)
..-+...+..|..|-.+=+.+..--.+||..-|.. +.|.-+.+||.+++.++-.+|.-.-+|..+.+
T Consensus 57 --~~~~~l~~s~~~EVema~klL~~DM~eLi~~mklaq~~~~ttl~~eyrr~ml~aah~LA~daKnLlD~VD 126 (139)
T PF03623_consen 57 --QILPSLPSSVRREVEMAHKLLSKDMAELISAMKLAQQNSNTTLDEEYRRQMLSAAHVLAMDAKNLLDVVD 126 (139)
T ss_dssp --HHGGGSHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11111111222233333233444445555544443 33444566777777777766666666665543
No 201
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=37.25 E-value=92 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.5
Q ss_pred CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC--CCcceeEEecCC
Q psy15599 95 LDGTLKTLLVDDSQPVANLMVVICTKIGITN--HDEYSLVRENPE 137 (2347)
Q Consensus 95 ~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~--~e~FsL~~~~~~ 137 (2347)
++--+++|.++..+++.+++.....+.||.. ++.|-|.....+
T Consensus 13 ~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~ 57 (100)
T cd01781 13 PTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSND 57 (100)
T ss_pred CCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEecc
Confidence 5566999999999999999999999999963 689999987553
No 202
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=36.80 E-value=1.4e+02 Score=33.45 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=46.2
Q ss_pred ceeEEEEecCCceEEEeCC------------ccceeeeeeccccceeeeeC---ceEEEEeCCCc-C--cEEEEech---
Q psy15599 332 LVPRLLGVTKDSVLRLDER------------TKEIMKTWPLTTVRRWGASS---NVFTLDFGDYS-D--NYYSVQTT--- 390 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~------------tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~-~--~~f~~~T~--- 390 (2347)
..++.|-|+.+||.+++.. ++.++..+|+.+|.-...++ +.|...-.+.. + .++.|.+.
T Consensus 42 k~kV~l~VS~~Gv~v~d~k~~~~~~~~~~~~tk~li~~~~i~rISf~a~D~~~~k~FayIakd~~~~~~~ChvF~~~k~~ 121 (140)
T cd01270 42 KRKVTIHVSVDGVKVVLKKKKRKKKNWTWDESKILVMNHPIYRIFYVSHDSQDLKIFSYIARDGASNTFKCNVFKSHKKS 121 (140)
T ss_pred ceeEEEEEecCcEEEEecccccccccccccCcccEEEecCeeEEEEeecCCCCCcEEEEEecCCCCCceEEEEEEEcChh
Confidence 4578999999999999875 45666777776664333332 56777666542 2 25666665
Q ss_pred HHHHHHHHHHHH
Q psy15599 391 EAEQIQQLIAGY 402 (2347)
Q Consensus 391 q~k~I~~LI~gY 402 (2347)
++.+|...|+.=
T Consensus 122 ~A~~I~~TIGqA 133 (140)
T cd01270 122 QAMRIVRTVGQA 133 (140)
T ss_pred hHHHHHHHHHHH
Confidence 367777666543
No 203
>KOG0994|consensus
Probab=36.49 E-value=1.7e+03 Score=32.91 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=58.8
Q ss_pred HHhhhhHhhHHHHHHHHHhhccccCCCCCCCCccchhHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhcC-------CCCC
Q psy15599 511 ALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQIAAMNAATAQVVTMTS-------GEVT 583 (2347)
Q Consensus 511 al~~~i~~~~~~v~~a~~el~~~~~~~~~~~d~as~~w~~~~~~~~k~~v~~~~~a~~a~~a~~~~~~a-------~~~~ 583 (2347)
++|.-|..-..++-+.-.+|...-.++.+ .++-.-.++|+.+-|- |.+..+-....++++.+.|. +.-+
T Consensus 1171 ~il~~L~~rt~rl~~~A~~l~~tGv~gay---~s~f~~me~kl~~ir~-il~~~svs~~~i~~l~~~~~~lr~~l~~~~e 1246 (1758)
T KOG0994|consen 1171 AILQELALRTHRLINRAKELKQTGVLGAY---ASRFLDMEEKLEEIRA-ILSAPSVSAEDIAQLASATESLRRQLQALTE 1246 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhh---HhHHHHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777777888877777766 2222223333333322 11111122233333333321 1011
Q ss_pred CccchhhhhhhhhcchhhHhhhhHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q psy15599 584 DYSGVESAITSISHTLPEMSKGVRMLAALTPSGDELLDAARKLCFAFTDLLK 635 (2347)
Q Consensus 584 d~~~v~~~i~~i~s~~~~~~~~~k~la~l~~~~~~L~~aar~La~a~s~ll~ 635 (2347)
+.+.+...++.|.+.++ ..-|.|.-|..+.+.|....|.|.+.+.++=.
T Consensus 1247 ~L~~~E~~Lsdi~~~~~---~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLP---LAGKDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhhhhhhhhhhhhhccc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444443333322 22344444444456788888888888776633
No 204
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=35.77 E-value=1.2e+02 Score=34.40 Aligned_cols=74 Identities=11% Similarity=0.195 Sum_probs=53.3
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeee-C----ceEEEEeCCCcC--cEEEEechH--HHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS-S----NVFTLDFGDYSD--NYYSVQTTE--AEQIQQLIAGY 402 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~-~----~~f~I~~~d~~~--~~f~~~T~q--~k~I~~LI~gY 402 (2347)
..++.|.|+.+||.+++.++++++..+++..| +|... + +.|...-.+..+ -+|.|++.+ +.+|..-|+.=
T Consensus 74 ~~~V~l~IS~~~v~~~~~~t~~ii~~H~l~~I-Sfaa~gd~d~~~~~ayIAKd~~~~r~ChVf~~~~~lAq~Ii~TIGQA 152 (160)
T cd01209 74 GMPITINVSSSSLNLMAQDCKQIIANHHMQSI-SFASGGDPDTAEYVAYIAKNPDNQRACHVLECPEGLAQDLISTIGQA 152 (160)
T ss_pred CceEEEEEEeeEEEEeccCchhHHhcCCCcce-EEEeCCCCCcceeEEEEEcCCCCCceeEEEEcCCchHHHHHHHHHHH
Confidence 46799999999999999999999999999988 45553 1 344444444432 378887766 77777777655
Q ss_pred HHHH
Q psy15599 403 IDII 406 (2347)
Q Consensus 403 i~l~ 406 (2347)
.++-
T Consensus 153 F~la 156 (160)
T cd01209 153 FELR 156 (160)
T ss_pred HHHH
Confidence 5443
No 205
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=35.36 E-value=52 Score=32.49 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=38.4
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccC
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDG 56 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~ 56 (2347)
.+|+++++ -.-++.+.|.++|.|++..+.++-.. ++++|.+|+...
T Consensus 2 ~~V~LPng-~~t~V~vrpg~ti~d~L~~~c~kr~l----~~~~~~v~~~~~ 47 (72)
T cd01760 2 CRVYLPNG-QRTVVPVRPGMSVRDVLAKACKKRGL----NPECCDVFLLGL 47 (72)
T ss_pred EEEECcCC-CeEEEEECCCCCHHHHHHHHHHHcCC----CHHHEEEEEecC
Confidence 57888877 55688999999999999999998765 479999999644
No 206
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=35.22 E-value=1.9e+02 Score=40.31 Aligned_cols=73 Identities=5% Similarity=0.175 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAP-GQKECDQAIEAISSRLRELDE 1402 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aP-GQkECd~Ai~~l~~~i~~ld~ 1402 (2347)
+++.....+..+-..++.+|.|+..++.+...++.+.+.+|.+-..+.+.-- =-.+.+..+.+||.++.+|-.
T Consensus 104 gls~~l~~ff~alq~la~~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~ 177 (624)
T PRK12714 104 NVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAK 177 (624)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778999999999999999999999999999999999999877766432 235667778888877655544
No 207
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=35.17 E-value=60 Score=32.17 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=40.3
Q ss_pred cCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 22 DPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 22 ~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.|+.+|.++-..|-+..+.. +++...|+. +.+|.-|....+|..|++.+|..++|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~---~~~Rqrl~~----~~~g~~L~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQL---TVNRQSLRL----EPKGKSLKDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCC---CcceeEEEe----CCCCcccCCcccHhhcCCCCCCEEEEe
Confidence 58899999999888765332 223444443 346667778889999999999888764
No 208
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=35.05 E-value=2.8e+02 Score=32.79 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=48.4
Q ss_pred CCcceeEEEEecCCceEEEe------CCccceeeeeeccccceeeeeC---ceEEEEeCCCcCcEEEEechHHHHHH
Q psy15599 329 KNKLVPRLLGVTKDSVLRLD------ERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSDNYYSVQTTEAEQIQ 396 (2347)
Q Consensus 329 ~~~~~~vlLGI~~~GI~ild------~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~~~f~~~T~q~k~I~ 396 (2347)
++++.+++|-|+.+.|++++ +....+-..+|+.+|..+.+++ +.|.|.+.+.- .|.|++..-.++.
T Consensus 62 ~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~--D~il~~~~k~Elv 136 (199)
T PF06017_consen 62 RNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEG--DLILESDFKTELV 136 (199)
T ss_pred CCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCCEEEEEECCCC--CEEEEeCcHHHHH
Confidence 45677899999999999994 5555677889999999999876 57888884443 3555555444433
No 209
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=34.80 E-value=1.1e+02 Score=30.19 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=40.5
Q ss_pred eEEEEeCCCcEEEEEEc-CCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 89 TLKVRMLDGTLKTLLVD-DSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd-~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
.+++++. |....+.+. ...+-.++...|++++++.. ..|.|.+.+++++
T Consensus 2 ~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d 51 (81)
T cd05992 2 RVKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGD 51 (81)
T ss_pred cEEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCC
Confidence 4678876 457777887 89999999999999999976 7889999877643
No 210
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=33.50 E-value=83 Score=38.55 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=75.7
Q ss_pred eEEEEEEecCC---eeEEEEecCCCcHHHHHHHHHhhcCcccCCCcccccc-ccccCCCccccccccCCchhhhhccCCc
Q psy15599 4 LSLKICIVDRN---VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGL-FLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 4 ~~L~v~~~~~~---~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dygl-f~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
+=||.+-+..+ -.-.+.+..+..|.++.-.|+++++-+ .+=.| ++.+..|.+-..+.+..++..+.+.+|+
T Consensus 71 lFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p-----~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~Gd 145 (249)
T PF12436_consen 71 LFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLP-----PDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGD 145 (249)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT-------TT--EEEEEEEETTEEEE--SSSBHHHTT--TTE
T ss_pred EEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCC-----CCCceEEEEEeccceeeEcCCCCchhhcccCCCC
Confidence 34566655443 222345666778888888999987654 22222 2222235666778889999999999999
Q ss_pred cccccccce---------------------eEEEEe-----CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 80 ELEYRRKMR---------------------TLKVRM-----LDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 80 ~L~~~~~~r---------------------~lkV~L-----~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.|.|.+... .+.|++ +++...++.+....+-.++.+.|+++||+ ++++.-||.
T Consensus 146 Ii~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~-dP~~lr~~~ 224 (249)
T PF12436_consen 146 IICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNV-DPEHLRFFT 224 (249)
T ss_dssp EEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS--GGGEEEE-
T ss_pred EEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-ChHHEEEEE
Confidence 999876321 244443 33447788899999999999999999999 777777776
Q ss_pred ecC
Q psy15599 134 ENP 136 (2347)
Q Consensus 134 ~~~ 136 (2347)
...
T Consensus 225 ~~~ 227 (249)
T PF12436_consen 225 VNP 227 (249)
T ss_dssp --T
T ss_pred ecc
Confidence 644
No 211
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.41 E-value=1.2e+02 Score=39.30 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=37.8
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCC--CCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGI--TNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL--~~~e~FsL~~~ 134 (2347)
.|.|+.++|....|.|+.+.||.+|-..|..+.|. -..+.+-|++.
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~ 49 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS 49 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence 57899999999999999999999999999998883 13355666654
No 212
>KOG3531|consensus
Probab=33.23 E-value=15 Score=49.83 Aligned_cols=161 Identities=6% Similarity=-0.222 Sum_probs=107.1
Q ss_pred ccccccchhhhhcCCCC--CceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcC
Q psy15599 177 VNWIDFSKTLREQGIDE--NEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFG 254 (2347)
Q Consensus 177 ~~WLd~~ktL~eQgv~e--~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~G 254 (2347)
..|+|...+.-.+.+-- ...|.+-.||+-++...+ +-.......|+|..++...|.|.|+.|.++..+-+--+...|
T Consensus 230 h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAki-rklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~ 308 (1036)
T KOG3531|consen 230 HPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKI-RKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKI 308 (1036)
T ss_pred chhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHH-HHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhc
Confidence 46888765543322111 223444457774443332 334456778899999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEEEEccCCCCccee
Q psy15599 255 DYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVP 334 (2347)
Q Consensus 255 D~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~ 334 (2347)
++.++.. ++...+..+.|+.+.-++ ...|...|+..+++.+..++..-.+..++.+.||+....-... .+ .+
T Consensus 309 cve~h~f-fr~~~~~~~k~k~~~~S~--gssfrysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~-ss----~~ 380 (1036)
T KOG3531|consen 309 CVEHHAF-FRLVEEPKPKPKTVFFSK--GSSFRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLY-SS----PY 380 (1036)
T ss_pred cccccch-hhhhcccCCCCCceeecc--cchhhhcCcchhccchhhhhcccccchhhcccccccccchhhc-cC----Cc
Confidence 8754321 111223344444443333 3678889999999999999999999999999999988765543 22 23
Q ss_pred EEEEecCCceEE
Q psy15599 335 RLLGVTKDSVLR 346 (2347)
Q Consensus 335 vlLGI~~~GI~i 346 (2347)
.++..-+.|+..
T Consensus 381 ~l~sd~~~~~~~ 392 (1036)
T KOG3531|consen 381 GLVSDVPEQHRN 392 (1036)
T ss_pred hhhhhccccccc
Confidence 445555555544
No 213
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=33.09 E-value=1.1e+02 Score=31.02 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=44.5
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhh
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEY 72 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~ 72 (2347)
.+|++. .+-..-+.|+++.+..++|..+++.++-. +...|.++|.|++ ...+-+.....|+.
T Consensus 2 ~~K~~y--~gdi~it~~d~~~s~e~L~~~v~~~c~~~---~~q~ft~kw~DEE-GDp~tiSS~~EL~E 63 (83)
T cd06404 2 RVKAAY--NGDIMITSIDPSISLEELCNEVRDMCRFH---NDQPFTLKWIDEE-GDPCTISSQMELEE 63 (83)
T ss_pred eEEEEe--cCcEEEEEcCCCcCHHHHHHHHHHHhCCC---CCCcEEEEEECCC-CCceeecCHHHHHH
Confidence 356665 44556789999999999999999998875 4478999998884 44444444444443
No 214
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=33.08 E-value=1.3e+02 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=42.8
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
..+++++-++....+.+....+..++...|..++++. ...|.|.|.+.+++
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD 52 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGD 52 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSS
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCC
Confidence 3578888776666699999999999999999999998 77899999987653
No 215
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=33.07 E-value=2.1e+02 Score=28.25 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=31.9
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGIT 124 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~ 124 (2347)
.+.|.-+.|....+.++++.||.++-..|..+.|++
T Consensus 3 ~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~ 38 (73)
T cd01791 3 EVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 567777789999999999999999999999998864
No 216
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=33.04 E-value=1.4e+02 Score=29.39 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=32.3
Q ss_pred CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 95 LDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 95 ~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
++|...++.++++.|+.++-..|-...|++. +...|++.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~-~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPA-GKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEEC
Confidence 5889999999999999999999999999754 44566543
No 217
>KOG2378|consensus
Probab=32.95 E-value=77 Score=40.82 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=43.5
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCccc
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEV 140 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~ 140 (2347)
..+++||+||-++.++.+.-+++|+||+..+++++|-.+ +.-|......+|+
T Consensus 235 ev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~se--el~LV~v~s~GEk 286 (573)
T KOG2378|consen 235 EVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSE--ELILVKVSSSGEK 286 (573)
T ss_pred eeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhcccc--ceeEEEEccCCce
Confidence 346899999999999999999999999999999998765 3677766655553
No 218
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.55 E-value=91 Score=42.68 Aligned_cols=73 Identities=10% Similarity=0.200 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDE 1402 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~ 1402 (2347)
++......+..+-..++.+|.|+..++.+...++++.+.+|++-..+.+. .-=-.+.+..+.+||.++.+|-.
T Consensus 105 gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~ 178 (547)
T PRK08147 105 SLSTTMQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIAS 178 (547)
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566688899999999999999999999999999999999997766663 22234556666666665544433
No 219
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=32.01 E-value=85 Score=30.42 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=37.6
Q ss_pred ecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 11 VDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 11 ~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
.-.+-.+++++.|++++.+|+.....++... .++|.|.. ..| -++-.-++-+.++.+|..|+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~----~~~~~L~h----~~k--~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLD----PSSYDLKH----NNK--PLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT------GGG-EEEE----TTE--EESSS-BHHHH---SS-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCC----ccceEEEE----CCE--EeccccceeecCCCCCCEEe
Confidence 3345678999999999999999999999876 35888877 222 25666677788888887765
No 220
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=31.82 E-value=2.5e+02 Score=30.68 Aligned_cols=76 Identities=7% Similarity=0.131 Sum_probs=50.6
Q ss_pred CcceeEEEEecCCceEEEeCCc-cceeeeeeccccceeeeeC--ceEEEEeCCCcC--cEEEEec-hHHHHHHHHHHHHH
Q psy15599 330 NKLVPRLLGVTKDSVLRLDERT-KEIMKTWPLTTVRRWGASS--NVFTLDFGDYSD--NYYSVQT-TEAEQIQQLIAGYI 403 (2347)
Q Consensus 330 ~~~~~vlLGI~~~GI~ild~~t-kevl~~~~~~~I~~w~~~~--~~f~I~~~d~~~--~~f~~~T-~q~k~I~~LI~gYi 403 (2347)
+.+.++.+.|++.+|.+++.++ ++++..++...|.-.++++ +.|-+......+ ..+.|.+ +.+..+..-|..=.
T Consensus 37 ~~w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lSF~GvgKd~k~fafI~~~~~~~f~ChVF~ce~~A~~ls~av~aAc 116 (124)
T cd01271 37 EDWLSVNVNVAPSTITVISEKNEEEVLVECRVRYLSFLGIGKDVHTCAFIMDTGNQRFECHVFWCEPNAGNVSKAVEAAC 116 (124)
T ss_pred ccCceEEEEeCCceEEEEccCccceeeeeeeEEEeccccCCCCccEEEEEEecCCCcEEEEEEEecCChHHHHHHHHHHH
Confidence 4567899999999999999885 6788888877776666654 566666643322 2334433 23456766666444
Q ss_pred HH
Q psy15599 404 DI 405 (2347)
Q Consensus 404 ~l 405 (2347)
.+
T Consensus 117 ~l 118 (124)
T cd01271 117 KL 118 (124)
T ss_pred HH
Confidence 43
No 221
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=29.97 E-value=1e+03 Score=28.43 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.1
Q ss_pred ccccchhHHHHHHHHH
Q psy15599 1918 EHTRGTRALESTIEAI 1933 (2347)
Q Consensus 1918 e~~rgt~ale~~~~~I 1933 (2347)
++|||..-+-..|+.|
T Consensus 123 ~~g~~~~~va~~I~~l 138 (262)
T smart00283 123 EAGRGFAVVADEVRKL 138 (262)
T ss_pred cCCCCchhhHHHHHHH
Confidence 4455554443344333
No 222
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=29.32 E-value=1.2e+02 Score=32.39 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=48.4
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhc--CcccCCCcc-ccccccccCCCccccccccCCchhhhh
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKI--SEANFGEAK-DYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~--~~~~~~~~~-dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
.+-..|++++....+++++.++.++.+++..+..+. ...+..+.+ ||.|-. -....||.+..+|..|.
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV----~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKV----CGRDEYLLGDHPLGSFE 87 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEe----cCcEEEEeCCeeeechH
Confidence 455667777778999999999999999999877773 111122334 787777 45567888777776664
No 223
>PLN02560 enoyl-CoA reductase
Probab=28.91 E-value=98 Score=39.14 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=46.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCC-ccccccccCCchhhhhccCCcccccc
Q psy15599 17 KTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDV-KKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 17 kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~-~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.++.+.|+.+|.++-..|-++.+.. +++.-.|...+.++ .++.=|..+++|..|+++++++|+++
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~~~~---~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRKKKY---YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHcCCC---ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 3789999999999999998875432 22444555543333 34566778889999999888887754
No 224
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=28.84 E-value=1.7e+03 Score=30.52 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhhhhHHhhhhhhCCChh-----hhhHHHHHHhhHHHHHHHHH
Q psy15599 1665 LSSQLTHQYSKLCTDCIGAVASASNPE-----VSGRLCGAVHDLGTACINTV 1711 (2347)
Q Consensus 1665 ~~~~~s~~~~~l~~~a~~a~~~~~~~~-----~~~~i~~~~~~l~~s~~~lv 1711 (2347)
.-.+|++.-.-|+.+|.=-++.+..+- +...|+.-...-..++.+|-
T Consensus 365 ~I~~Ia~QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~LA~~t~~st~~I~ 416 (553)
T PRK15048 365 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIK 416 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666655543333333333 44444444444444444433
No 225
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=28.33 E-value=62 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=25.9
Q ss_pred EEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhC
Q psy15599 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIG 122 (2347)
Q Consensus 90 lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LG 122 (2347)
++|++|||+.+. +...+|+.|+...|-..|+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~ 31 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLA 31 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHH
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHH
Confidence 589999999888 6677889999888887764
No 226
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=28.32 E-value=1.2e+02 Score=30.64 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=45.4
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccc--cCCchhhh
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLE--PGRNLEYY 73 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~--~~~tL~~y 73 (2347)
.+|++. .+-..-+++.|++.+.+++..|.++++.. +...|.|.|.|++ |-|.. ...-|+.+
T Consensus 2 ~vK~~~--~~d~~r~~l~~~~~~~~L~~~i~~r~~~~---~~~~f~LkY~Dde---gd~v~ltsd~DL~ea 64 (82)
T cd06407 2 RVKATY--GEEKIRFRLPPSWGFTELKQEIAKRFKLD---DMSAFDLKYLDDD---EEWVLLTCDADLEEC 64 (82)
T ss_pred EEEEEe--CCeEEEEEcCCCCCHHHHHHHHHHHhCCC---CCCeeEEEEECCC---CCeEEeecHHHHHHH
Confidence 355666 45577889999999999999999999875 3478999997775 66663 34445553
No 227
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=28.07 E-value=1.1e+02 Score=30.44 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=45.1
Q ss_pred EEEEecCC-eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 7 KICIVDRN-VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 7 ~v~~~~~~-~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+|.|.-.+ ...-+..-.+.+|.+++-.|.+.+..... +...++-|--. ..++.=|.++++|..|++++|+.|.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~-~~~~~~~~~L~--~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGD-DPPGHGQWVLA--RAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG---GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccC-CCCCcceEEEE--ecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 44443343 67778888899999999999999886532 22323333322 34566788999999999999998875
No 228
>PF03429 MSP1b: Major surface protein 1B; InterPro: IPR005091 The major surface protein (MSP1) of the cattle pathogen Anaplasma is a heterodimer comprised of MSP1a and MSP1b. This family is the MSP1b chain. The MSP1 proteins are putative adhesins for bovine erythrocytes.
Probab=27.97 E-value=5.8e+02 Score=32.93 Aligned_cols=164 Identities=19% Similarity=0.285 Sum_probs=89.2
Q ss_pred CchhhhhhHHHHHHHHhhhhhH---Hhhhh--hhCCChh------hhhHHHHHHhh----HHHHHHHHHHHHhhccCCCC
Q psy15599 1658 DVKSMSGLSSQLTHQYSKLCTD---CIGAV--ASASNPE------VSGRLCGAVHD----LGTACINTVTMAATCQTSGD 1722 (2347)
Q Consensus 1658 ~~~~l~~~~~~~s~~~~~l~~~---a~~a~--~~~~~~~------~~~~i~~~~~~----l~~s~~~lv~aa~~~~~~~d 1722 (2347)
-.+.|++++++|.+...++|.- -+.++ +|++.|. +-.+..+.++. +.+.+-.|.++.+.++.- |
T Consensus 491 gt~tiktivsdmcnelaqi~~~sqaerdalv~sf~p~pparttke~vs~m~~~~~s~~~~~~~~~~v~~~ag~~a~~~-d 569 (726)
T PF03429_consen 491 GTETIKTIVSDMCNELAQICGLSQAERDALVQSFTPQPPARTTKEIVSQMCNSVKSAFGSISHITNVIRQAGKDAQKI-D 569 (726)
T ss_pred cchHHHHHHHHHHHHHHHhccccHHHHHHHHHhcCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhcc-C
Confidence 3567888888888887777643 34444 7777776 33334444444 334444444555554422 3
Q ss_pred hhhH-HHH-HHHHHHHHHHH------------HHHHHHHhcCCCchhHHHHHHHhhhhhhhcHHHHHHHHhcCCCccccC
Q psy15599 1723 DYTH-REF-ADTNRVLAEKV------------SQVLYALQAGSRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKE 1788 (2347)
Q Consensus 1723 ~~t~-~~l-~~~ar~v~e~v------------~~l~aal~~g~~G~qac~~a~~~vsgii~dLd~ti~fA~ag~l~~~~~ 1788 (2347)
|..+ .++ -+-...|+|++ .-|+.++...+.+.|+ |+.||-......-.++.+
T Consensus 570 ~~v~vaeispeti~~ms~a~yal~~~e~~~i~~all~a~nd~sk~~~a----------i~~~~ina~ie~c~~qtn---- 635 (726)
T PF03429_consen 570 PQVEVAEISPETIYAMSEALYALNMQESAAINNALLEAVNDSSKDDQA----------IVTDLINATIEVCTEQTN---- 635 (726)
T ss_pred CcceeeecCHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCccchH----------HHHHHHHHHHHHHHhccc----
Confidence 3321 000 11223344433 3467788888888774 344554444444433322
Q ss_pred CchhhHHHHHH----------HHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHH
Q psy15599 1789 NDTFADHRENI----------LKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQL 1838 (2347)
Q Consensus 1789 ~~~f~d~~~~i----------~~~ak~lv~~~~~lv~~~~~~qe~La~aa~~~~~~~~~L 1838 (2347)
++..|--.. +.-+..|-|.+.+...-...+||+|++++......+..-
T Consensus 636 --tla~~tae~q~gleaagi~~~daq~lqea~~~~kg~egin~eel~qaaegla~avnea 693 (726)
T PF03429_consen 636 --TLAGHTAEVQAGLEAAGIKLDDAQGLQEATPQKKGVEGINPEELEQAAEGLATAVNEA 693 (726)
T ss_pred --ccccchHHHHhhhHhhccccccchhhhhhChhhccCCCCCHHHHHHHHHHHHHHhhhh
Confidence 111111110 223445666666666667889999999998887766543
No 229
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=27.73 E-value=2.9e+02 Score=26.93 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=41.1
Q ss_pred CcceeEEEEecCCceEEEeCCccceee--eeeccccceeeeeC------ceEEEEeCC--CcCcEEEEech
Q psy15599 330 NKLVPRLLGVTKDSVLRLDERTKEIMK--TWPLTTVRRWGASS------NVFTLDFGD--YSDNYYSVQTT 390 (2347)
Q Consensus 330 ~~~~~vlLGI~~~GI~ild~~tkevl~--~~~~~~I~~w~~~~------~~f~I~~~d--~~~~~f~~~T~ 390 (2347)
+...++++-+...++.+++........ .+++..+. +...+ ..|.|...+ .....|.+.+.
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~ 86 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSE 86 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCH
Confidence 456789999999999999887655544 78888887 65543 577777764 32224444444
No 230
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.14 E-value=2.2e+02 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=42.0
Q ss_pred eEEEEeCCCcEEEEEEcC-----CCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 89 TLKVRMLDGTLKTLLVDD-----SQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~-----sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
.+||.+ +|..+.|.++. ..+..++...|.+.++|.....|.|.|.+.+++
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd 56 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGD 56 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC
Confidence 467776 77788888885 689999999999999998878999988877543
No 231
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=27.04 E-value=2.3e+02 Score=28.85 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=39.8
Q ss_pred eEEEEeCCCcEEEEEEcC--CCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 89 TLKVRMLDGTLKTLLVDD--SQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~--sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
.+|+.+ +|..+.+.+++ ..+-.++...|.++++|. .|.|-+.+++++
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e 50 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENE 50 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCC
Confidence 466775 67788999998 779999999999999999 799988877655
No 232
>PLN02560 enoyl-CoA reductase
Probab=25.99 E-value=2.3e+02 Score=35.85 Aligned_cols=46 Identities=24% Similarity=0.122 Sum_probs=36.3
Q ss_pred eEEEEeCCCcEE---EEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLK---TLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~---~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.|...+|... ++++++++||.|+-..|.++.++..++--.|.+.
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~ 50 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLP 50 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEe
Confidence 356777778765 7899999999999999999988865555666654
No 233
>KOG0005|consensus
Probab=25.95 E-value=1.1e+02 Score=28.66 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=35.6
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNH 126 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~ 126 (2347)
.++|.++.|..+.+.|++..++..+-+.|-++.||+..
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~ 39 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCch
Confidence 57899999999999999999999999999999999865
No 234
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.01 E-value=2.7e+02 Score=28.42 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=43.1
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
.+|+++ +|......++.+.+-.+++..+.....+.....|.+++.+++++
T Consensus 2 ~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD 51 (83)
T cd06404 2 RVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD 51 (83)
T ss_pred eEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC
Confidence 466775 78888899999999999999999999998888999999987544
No 235
>KOG0010|consensus
Probab=24.50 E-value=98 Score=40.73 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=55.0
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.+||+|...+-++.+.+..+.+|.+.-..|..++... .+.--|.+ .|+.|+...+|..|++++|.++|+.
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~----~dqlvLIf------aGrILKD~dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAP----PDQLVLIY------AGRILKDDDTLKQYGIQDGHTVHLV 84 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCC----hhHeeeee------cCccccChhhHHHcCCCCCcEEEEE
Confidence 4788886666699999999999999888888877433 23323322 3678999999999999999988865
Q ss_pred cc
Q psy15599 85 RK 86 (2347)
Q Consensus 85 ~~ 86 (2347)
.+
T Consensus 85 ik 86 (493)
T KOG0010|consen 85 IK 86 (493)
T ss_pred ec
Confidence 43
No 236
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=24.21 E-value=3.3e+02 Score=27.53 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=36.9
Q ss_pred eeEEEEeCCCcEEEEEE--cCCCcHHHHHHHHHHHhC-CCCCCcceeEEe
Q psy15599 88 RTLKVRMLDGTLKTLLV--DDSQPVANLMVVICTKIG-ITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~V--d~sttv~evv~~Ic~~LG-L~~~e~FsL~~~ 134 (2347)
..+.|..++|...++.+ +++.||.++-..|....+ ...++.--|.|.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 46889999999866666 899999999999999885 344566666665
No 237
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=23.90 E-value=1.4e+02 Score=30.58 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=35.8
Q ss_pred cEEEEEEcCCCcHHHHHHHHHHHhCCCC--CCcceeEEecCCcc
Q psy15599 98 TLKTLLVDDSQPVANLMVVICTKIGITN--HDEYSLVRENPEDE 139 (2347)
Q Consensus 98 ~~~~v~Vd~sttv~evv~~Ic~~LGL~~--~e~FsL~~~~~~~e 139 (2347)
-.+.+++....++..|+....++.+|.. +..|.||+.-++.|
T Consensus 25 ~~K~~rvs~dDpC~kVL~~Alkry~I~~~dW~~Y~L~I~YgdqE 68 (98)
T cd01786 25 PLKQLRASKEDSCEKILKNAMKRHNLNDQDWRQYVLVICYGDQE 68 (98)
T ss_pred cchheeeeccCcHHHHHHHHHHHcCCChhhhhheEEEEEeCCee
Confidence 3677888888999999999999999976 68999999876655
No 238
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=23.41 E-value=3.4e+02 Score=28.15 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=33.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 99 LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 99 ~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
++.|.+...+|+.+|+..+...|||.-...|=|....+
T Consensus 26 ~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkE 63 (105)
T cd01779 26 SCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKE 63 (105)
T ss_pred EeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeec
Confidence 67788899999999999999999998887888887754
No 239
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=23.36 E-value=1.2e+02 Score=32.18 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=36.8
Q ss_pred EEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccC
Q psy15599 7 KICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDG 56 (2347)
Q Consensus 7 ~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~ 56 (2347)
..+|.+.+.+|++.+.+=.+-.++++++..||+.. +++++|..|+.+.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~--~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLP--EHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS----CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCc--cccccceEEEecc
Confidence 45678889999999999999999999999999988 4688999999666
No 240
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.39 E-value=5.2e+02 Score=28.34 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=36.3
Q ss_pred CCc-eEEEeCCccceeeeeeccccceeeeeC------ceEEEEeCCCcCc-----EEEEechH
Q psy15599 341 KDS-VLRLDERTKEIMKTWPLTTVRRWGASS------NVFTLDFGDYSDN-----YYSVQTTE 391 (2347)
Q Consensus 341 ~~G-I~ild~~tkevl~~~~~~~I~~w~~~~------~~f~I~~~d~~~~-----~f~~~T~q 391 (2347)
++| |.++|+.++..+.+||.-+|.-|.-++ +.|-+........ .|.|+-++
T Consensus 49 seG~V~l~D~~t~~~ias~~I~rI~fC~rG~~~t~e~~cFAft~s~~~se~~qcHVFrC~~~e 111 (125)
T cd01211 49 IEGTVKLIDAQSNKVIASFSIVNIRFCIRGESSTSENNCFAFTFTHKISILFQCHVFRCSIAE 111 (125)
T ss_pred CCceEEEEcCCCCcEEEEEEEEEEEEEEecCCCCcccccEEEEeecCCceEEEEEEEecCCHH
Confidence 666 888999999999999999998776632 5677776443321 45555544
No 241
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=22.27 E-value=2.3e+02 Score=28.02 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=47.0
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccc-cccccCCchhhhhccCCc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKG-VWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~-~WL~~~~tL~~y~l~~~~ 79 (2347)
-.|.|+++++. ..+-+|.++.+|+++...|..... ++..|.|+- .. |++. .....+.+|...++.++.
T Consensus 3 t~i~iRlpdG~-~~~~~F~~~~tl~~l~~fv~~~~~-----~~~~f~L~t-~~-Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGK-RLEQRFNSTHKLSDVRDFVESNGP-----PAEPFTLMT-SF-PRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCC-EEEEEeCCCCCHHHHHHHHHHcCC-----CCCCEEEEe-CC-CCccCCCCCccCcHHHcCCccce
Confidence 35788888874 467789999999999999987532 246677665 22 4442 122368899999887543
No 242
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=21.80 E-value=2.2e+02 Score=29.43 Aligned_cols=74 Identities=22% Similarity=0.229 Sum_probs=46.5
Q ss_pred EEEEEE---ecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCcc
Q psy15599 5 SLKICI---VDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGDE 80 (2347)
Q Consensus 5 ~L~v~~---~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~~ 80 (2347)
+||.++ .+.+...+.+|...-+|+.+...+++.|... .+=-||-... +....-| .+..|++..++..|..
T Consensus 1 ~~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i~-----~E~RLW~~~~-~~~~e~L~~~~~Tv~da~L~~gQ~ 74 (88)
T PF14836_consen 1 SLKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNIQ-----EETRLWNKYS-ENSYELLNNPEITVEDAGLYDGQV 74 (88)
T ss_dssp -EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT-T-----S-EEEEEECT-TTCEEEE--TTSBTTTTT--TTEE
T ss_pred CceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCCC-----ccceehhccC-CcchhhhCCCCccHHHccCcCCCE
Confidence 466666 2367899999999999999999999998873 3334444333 3333344 4578999988877765
Q ss_pred cccc
Q psy15599 81 LEYR 84 (2347)
Q Consensus 81 L~~~ 84 (2347)
+.+.
T Consensus 75 vliE 78 (88)
T PF14836_consen 75 VLIE 78 (88)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 243
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=21.12 E-value=1.1e+02 Score=32.73 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=48.1
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcc-cCC--CccccccccccCCCccccccccCCchhhhhccCC
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEA-NFG--EAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNG 78 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~-~~~--~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~ 78 (2347)
.++||.++.|+.-.=..+|.|+.+|.++-..|.+.-+.. +.. ++++--|- -.|+-|+.+++|..|.+--|
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI------ysGKiLeD~~TL~d~~~p~g 76 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI------SAGKILENSKTVGECRSPVG 76 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE------eCCeecCCCCcHHHhCCccc
Confidence 478999998886666889999999999999998765421 000 01111111 13778999999999994433
No 244
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.01 E-value=5.7e+02 Score=28.47 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=50.0
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeee---CceEEEEeCCCc----C----cEEEEechH-HHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS---SNVFTLDFGDYS----D----NYYSVQTTE-AEQIQQLI 399 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~---~~~f~I~~~d~~----~----~~f~~~T~q-~k~I~~LI 399 (2347)
...+.|-|+++||.+.+.. ..+..|+..+|.-...+ ++.|...+.... . ..|.|...+ ++.|...+
T Consensus 41 ~~km~L~Vsp~GI~~~~~~--~~~~~~~i~RIsYCsad~~~p~VFa~I~r~~~~~~~~~l~CHAvlC~k~~~A~aial~L 118 (133)
T cd01214 41 DTKMKLTVSASGLKAVTAQ--RGLTEYWAHRITYCVAPARYPKVFCWIYRHEGKHLKVELRCHAVLCSKPEKAQAIALLL 118 (133)
T ss_pred cceEEEEEcCCceEEEecc--ccceEEEEeeeeeecCCcCCCcEEEEEEeecccccCcceEEEEEEeCCHHHHHHHHHHH
Confidence 4568999999999998866 44567877776433333 366776664321 1 256776654 67888777
Q ss_pred HHHHH-HHHhhhcc
Q psy15599 400 AGYID-IILKKKMS 412 (2347)
Q Consensus 400 ~gYi~-l~lk~rr~ 412 (2347)
..... -+-.++|.
T Consensus 119 ~q~f~~A~~~~kr~ 132 (133)
T cd01214 119 YQTLANALAEFKRE 132 (133)
T ss_pred HHHHHHHHHHhhhc
Confidence 76653 33345543
No 245
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=20.26 E-value=2.5e+02 Score=28.01 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc--ccCCchhhhhccCCccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL--EPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL--~~~~tL~~y~l~~~~~L 81 (2347)
-.|.|+++++. ...-+|.++.+|.+++..+...... ....|-|.-+ . |++ .|- +.+++|...++.++..|
T Consensus 5 ~~I~iRlPdG~-ri~~~F~~~~tl~~v~~~v~~~~~~----~~~~f~L~t~-~-Prk-~l~~~d~~~tL~e~gL~p~~~l 76 (80)
T smart00166 5 CRLQIRLPDGS-RLVRRFPSSDTLRTVYEFVSAALTD----GNDPFTLNSP-F-PRR-TFTKDDYSKTLLELALLPSSTL 76 (80)
T ss_pred EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHcccC----CCCCEEEEeC-C-CCc-CCccccccCCHHHCCCCCceEE
Confidence 35677777774 4677899999999999999553322 2355766552 2 443 233 23678998887766655
Q ss_pred cc
Q psy15599 82 EY 83 (2347)
Q Consensus 82 ~~ 83 (2347)
..
T Consensus 77 ~v 78 (80)
T smart00166 77 VL 78 (80)
T ss_pred EE
Confidence 43
No 246
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.05 E-value=2.6e+02 Score=29.33 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=40.0
Q ss_pred EEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 92 VRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 92 V~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
+...+|.++.+.|+...+-.|++..+++.+++... |.|.+..+.++
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~--~~lky~Lp~ed 62 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV--VTLKYQLPDED 62 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCC
Confidence 56789999999999999999999999999999865 88888766543
Done!