Query psy15599
Match_columns 2347
No_of_seqs 558 out of 1689
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:46:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dyj_A Talin-1; helix bundles, 100.0 1.9E-67 6.5E-72 620.0 33.9 322 1749-2074 9-331 (332)
2 3ivf_A Talin-1; FERM domain, c 100.0 1.5E-65 5.1E-70 646.1 40.1 371 1-407 1-371 (371)
3 2x0c_A Talin-1; cytoskeleton, 100.0 6E-62 2E-66 583.1 30.8 304 1081-1384 6-309 (309)
4 1tr2_A Vinculin isoform 1; act 100.0 6.4E-56 2.2E-60 617.4 70.6 880 990-2072 38-1044(1066)
5 1sj8_A Talin 1; structural pro 100.0 1.5E-57 5.1E-62 527.6 30.3 299 489-797 1-307 (308)
6 1r0d_A HIP1-related, huntingti 100.0 1.7E-52 5.7E-57 463.5 14.7 199 2075-2279 6-205 (206)
7 3fyq_A CG6831-PA (talin); 5-he 100.0 4.1E-50 1.4E-54 435.5 22.1 191 1751-1942 2-192 (199)
8 2jsw_A Talin-1; C-terminal act 100.0 1.8E-49 6.2E-54 436.5 19.8 184 2078-2268 2-186 (189)
9 1h4r_A Merlin; FERM, neurofibr 100.0 9E-43 3.1E-47 429.6 32.1 283 85-411 20-313 (314)
10 1ef1_A Moesin; membrane, FERM 100.0 1.3E-42 4.3E-47 424.6 32.1 281 88-411 2-293 (294)
11 2i1j_A Moesin; FERM, coiled-co 100.0 1.8E-42 6.3E-47 452.7 32.5 284 85-411 2-296 (575)
12 1tr2_A Vinculin isoform 1; act 100.0 8.3E-39 2.8E-43 445.8 62.3 958 653-1914 14-1043(1066)
13 3qij_A Protein 4.1; cytoskelet 100.0 5E-41 1.7E-45 409.3 27.0 275 84-406 14-295 (296)
14 3au4_A Myosin-X; protein-prote 100.0 3.2E-38 1.1E-42 417.2 33.4 348 21-415 156-546 (555)
15 1sj7_A Talin 1; structural pro 100.0 1.6E-39 5.6E-44 347.5 14.3 168 489-666 1-174 (174)
16 4dxa_B KREV interaction trappe 100.0 8.5E-39 2.9E-43 394.9 22.9 295 85-409 3-318 (322)
17 4f7g_B Talin-1; alpha-helix bu 100.0 5.9E-38 2E-42 351.3 18.2 197 1369-1615 13-210 (216)
18 2al6_A Focal adhesion kinase 1 100.0 8.4E-37 2.9E-41 384.0 23.8 289 84-410 4-325 (375)
19 3pvl_A Myosin VIIA isoform 1; 100.0 1.4E-35 4.9E-40 393.0 26.0 294 84-407 260-570 (655)
20 4f7g_A Talin-1; alpha-helix bu 100.0 6.8E-35 2.3E-39 341.6 22.3 200 212-412 23-222 (222)
21 1mix_A Talin; focal adhesion, 100.0 2.6E-35 9E-40 341.5 16.1 205 201-406 1-205 (206)
22 4eku_A Protein-tyrosine kinase 100.0 3.7E-33 1.3E-37 349.5 25.5 284 86-408 20-340 (392)
23 2kvp_A Talin-1; VBS, vinculin, 99.9 2E-27 6.7E-32 257.6 15.7 154 1593-1752 11-165 (165)
24 4f7g_B Talin-1; alpha-helix bu 99.9 3.3E-26 1.1E-30 256.8 19.8 193 1740-1935 13-206 (216)
25 2l10_A Talin-1; helical bundle 99.9 4.2E-25 1.4E-29 237.8 18.8 154 928-1081 3-157 (158)
26 2b0h_A Talin-1; vinculin, heli 99.9 5.4E-25 1.9E-29 230.8 14.6 125 1628-1752 12-137 (137)
27 2j0j_A Focal adhesion kinase 1 99.9 3E-23 1E-27 279.9 25.2 284 86-407 6-322 (656)
28 1u89_A Talin 1, talin; 4-helix 99.9 2.5E-22 8.6E-27 209.7 14.3 131 765-895 6-138 (139)
29 3dyj_A Talin-1; helix bundles, 99.9 4.6E-20 1.6E-24 218.3 30.7 315 1378-1748 9-327 (332)
30 1sj8_A Talin 1; structural pro 99.9 4.6E-21 1.6E-25 223.3 19.4 216 592-850 89-307 (308)
31 4igg_A Catenin alpha-1; asymme 99.8 1.3E-17 4.6E-22 222.9 45.2 355 709-1080 333-757 (832)
32 2x0c_A Talin-1; cytoskeleton, 99.8 4.3E-19 1.5E-23 213.2 26.4 297 1379-1914 6-303 (309)
33 2l7a_A Talin-1; vinculin, bund 99.8 4.9E-20 1.7E-24 192.1 13.1 119 792-910 3-123 (131)
34 1h6g_A Alpha-1 catenin; adhesi 99.8 1.6E-17 5.5E-22 196.9 25.7 220 640-907 20-245 (256)
35 2kc2_A Talin-1, F1; FERM, adhe 99.8 1.3E-19 4.4E-24 188.8 6.7 126 79-208 3-128 (128)
36 2kvp_A Talin-1; VBS, vinculin, 99.7 1.2E-17 4.1E-22 181.3 12.6 150 1761-1914 9-162 (165)
37 2lgx_A Fermitin family homolog 99.7 2.2E-18 7.4E-23 168.1 4.6 90 1-96 22-112 (112)
38 2b0h_A Talin-1; vinculin, heli 99.7 1E-16 3.6E-21 168.4 15.7 123 1790-1914 12-134 (137)
39 2l7n_A Talin-1; integrin, bund 99.7 6.4E-17 2.2E-21 175.6 14.3 157 1081-1384 4-168 (168)
40 2l10_A Talin-1; helical bundle 99.6 2.1E-15 7.2E-20 162.7 16.0 155 1082-1380 4-158 (158)
41 2kmc_A Fermitin family homolog 99.6 7.1E-16 2.4E-20 148.6 8.0 83 1-89 15-102 (102)
42 4igg_A Catenin alpha-1; asymme 99.5 7E-08 2.4E-12 129.9 76.3 724 705-1747 3-755 (832)
43 2l7n_A Talin-1; integrin, bund 99.4 9.8E-12 3.4E-16 135.2 18.5 155 928-1086 4-168 (168)
44 1r0d_A HIP1-related, huntingti 99.3 4.3E-12 1.5E-16 141.5 13.8 152 676-850 20-191 (206)
45 2jsw_A Talin-1; C-terminal act 99.3 1.5E-11 5.2E-16 136.2 13.4 153 676-851 14-185 (189)
46 1h6g_A Alpha-1 catenin; adhesi 99.2 1.4E-09 4.7E-14 129.1 25.8 200 711-947 40-247 (256)
47 2qdq_A Talin-1; dimerisation d 99.1 1.1E-10 3.8E-15 98.7 5.1 48 2280-2327 2-49 (50)
48 3fyq_A CG6831-PA (talin); 5-he 98.9 3E-08 1E-12 108.9 18.0 161 1379-1540 1-163 (199)
49 1u89_A Talin 1, talin; 4-helix 98.8 1.4E-08 4.7E-13 106.8 10.3 102 819-926 13-135 (139)
50 2l7a_A Talin-1; vinculin, bund 98.5 5.6E-07 1.9E-11 94.4 11.0 107 833-953 22-128 (131)
51 3b08_A Polyubiquitin-C, ubiqui 98.2 2.2E-05 7.4E-10 85.8 15.8 115 8-133 3-121 (152)
52 1qkr_A Vinculin, tail domain; 98.2 5.2E-06 1.8E-10 92.0 10.3 115 967-1081 40-166 (188)
53 3rf3_A Vinculin, metavinculin; 98.0 0.00067 2.3E-08 80.1 25.7 207 829-1081 40-251 (258)
54 3vf0_A Vinculin, metavinculin; 97.9 5.6E-05 1.9E-09 87.3 13.2 116 966-1081 134-261 (283)
55 3rf3_A Vinculin, metavinculin; 97.7 0.0017 6E-08 76.6 22.1 166 712-887 41-215 (258)
56 1dow_A Alpha-catenin; four-hel 97.7 0.0075 2.6E-07 68.6 24.9 188 684-907 8-195 (205)
57 3rt3_B Ubiquitin-like protein 97.6 0.00098 3.4E-08 73.5 15.8 119 4-133 3-126 (159)
58 1dow_A Alpha-catenin; four-hel 97.5 0.01 3.5E-07 67.5 23.6 199 833-1079 6-204 (205)
59 3u30_A Ubiquitin, linear DI-ub 97.5 0.0012 4E-08 73.9 15.3 117 6-133 21-141 (172)
60 3s90_C Talin-1, metavinculin; 97.4 9.1E-05 3.1E-09 60.8 3.4 36 1236-1271 5-40 (40)
61 1u6h_B Talin; protein-protein 97.4 3.4E-05 1.2E-09 60.1 0.9 30 856-885 1-30 (31)
62 1wgr_A Growth factor receptor- 97.4 0.00022 7.7E-09 71.5 6.8 52 86-137 8-59 (100)
63 1sj7_A Talin 1; structural pro 97.3 0.00016 5.5E-09 78.5 5.2 84 592-694 89-172 (174)
64 3epy_A Acyl-COA-binding domain 96.9 0.0017 5.8E-08 64.2 7.5 85 218-317 4-89 (89)
65 2cb8_A Acyl-COA-binding protei 96.7 0.0021 7.2E-08 63.4 6.8 81 221-316 5-86 (87)
66 1hbk_A ACBP, acyl-COA binding 96.7 0.0036 1.2E-07 62.0 8.2 81 221-316 5-88 (89)
67 1j0w_A Downstream of tyrosine 96.6 0.013 4.5E-07 59.3 11.9 89 319-407 6-99 (103)
68 1st7_A ACBP, acyl-COA-binding 96.6 0.0026 8.8E-08 62.7 5.9 81 221-316 4-85 (86)
69 2lbb_A Acyl COA binding protei 96.5 0.0023 8E-08 63.9 5.0 80 222-316 14-95 (96)
70 2cop_A Acyl-coenzyme A binding 96.4 0.0074 2.5E-07 61.9 8.8 85 218-317 8-93 (109)
71 2dlw_A Docking protein 2, isof 96.3 0.01 3.6E-07 61.0 8.7 74 333-406 28-105 (113)
72 2cqu_A Peroxisomal D3,D2-enoyl 96.1 0.01 3.6E-07 61.3 7.7 84 219-317 17-101 (116)
73 2v76_A Docking protein 1; alte 96.0 0.024 8.1E-07 57.9 9.4 71 334-404 24-101 (107)
74 1xr0_B FGFR signalling adaptor 95.8 0.095 3.3E-06 54.7 13.4 93 312-406 6-101 (129)
75 2kc2_A Talin-1, F1; FERM, adhe 95.8 0.008 2.7E-07 63.2 5.6 80 5-88 13-124 (128)
76 1p5t_A DOK1, docking protein 1 95.8 0.03 1E-06 58.6 9.7 75 333-407 25-106 (127)
77 1zw2_B Talin, metavinculin; co 95.8 0.0025 8.7E-08 47.1 1.0 26 2127-2152 1-26 (26)
78 2kuq_A Fibroblast growth facto 95.7 0.059 2E-06 57.5 11.6 86 317-404 18-106 (153)
79 2kup_A Fibroblast growth facto 95.6 0.062 2.1E-06 57.1 11.1 85 317-403 18-105 (146)
80 3flv_A Acyl-COA-binding domain 95.3 0.031 1.1E-06 57.8 7.6 85 218-317 24-113 (119)
81 2wh5_A Acyl-COA-binding domain 95.2 0.036 1.2E-06 56.5 7.6 77 221-312 11-91 (106)
82 3fp5_A Acyl-COA binding protei 95.1 0.044 1.5E-06 55.8 7.7 81 221-316 7-92 (106)
83 1zvz_B Talin 1, metavinculin; 94.2 0.02 6.8E-07 43.3 2.0 25 828-852 2-26 (26)
84 1xwj_B Talin, metavinculin; ce 94.2 0.02 6.9E-07 43.3 2.0 25 1725-1749 2-26 (26)
85 3ml4_A Protein DOK-7; tyrosine 94.0 0.24 8.2E-06 56.4 11.3 85 318-403 116-204 (224)
86 3ivf_A Talin-1; FERM domain, c 93.9 0.093 3.2E-06 65.8 8.7 78 88-202 4-84 (371)
87 4gmv_A RAS-associated and plec 93.8 0.092 3.1E-06 62.8 7.9 52 86-137 30-81 (281)
88 1v6e_A Cytoskeleton-associated 93.5 0.14 4.8E-06 51.3 7.6 80 1-84 5-85 (95)
89 1qqg_A IRS-1, insulin receptor 93.3 0.37 1.3E-05 57.4 12.1 94 317-411 158-258 (264)
90 2al3_A TUG long isoform; TUG U 93.1 0.17 6E-06 49.6 7.1 45 89-134 11-55 (90)
91 4dbg_A Ranbp-type and C3HC4-ty 93.1 0.18 6.3E-06 51.3 7.5 72 2-83 21-96 (105)
92 2kj6_A Tubulin folding cofacto 92.1 0.23 7.9E-06 50.0 6.7 66 15-84 27-93 (97)
93 3vf0_A Vinculin, metavinculin; 91.9 2.4 8.1E-05 49.6 15.5 141 644-798 111-262 (283)
94 3s90_C Talin-1, metavinculin; 91.9 0.12 4E-06 42.9 3.4 35 1474-1508 6-40 (40)
95 2kjr_A CG11242; UBL, ubiquitin 91.9 0.26 8.7E-06 49.5 6.7 78 2-84 14-93 (95)
96 2bwf_A Ubiquitin-like protein 91.7 0.34 1.2E-05 46.0 7.2 69 6-84 5-73 (77)
97 1t01_B Talin 1; five helix bun 91.7 0.15 5.2E-06 36.2 3.3 25 616-640 1-25 (26)
98 1wjn_A Tubulin-folding protein 91.3 0.39 1.3E-05 48.2 7.5 79 3-85 9-91 (97)
99 1u6h_B Talin; protein-protein 90.8 0.1 3.5E-06 41.0 2.0 28 738-765 1-28 (31)
100 4b6w_A Tubulin-specific chaper 90.6 0.55 1.9E-05 46.2 7.5 66 15-84 15-81 (86)
101 1qkr_A Vinculin, tail domain; 90.4 1.6 5.4E-05 48.8 11.7 114 1636-1749 40-165 (188)
102 1t0y_A Tubulin folding cofacto 89.9 0.48 1.7E-05 49.7 7.0 76 5-84 6-84 (122)
103 1ndd_A NEDD8, protein (ubiquit 89.4 1.2 4E-05 42.0 8.7 44 89-133 2-45 (76)
104 3a9j_A Ubiquitin; protein comp 88.9 1.3 4.6E-05 41.5 8.7 44 89-133 2-45 (76)
105 2kdb_A Homocysteine-responsive 88.9 0.52 1.8E-05 47.6 6.1 74 2-83 22-98 (99)
106 1wh3_A 59 kDa 2'-5'-oligoadeny 88.8 1.5 5E-05 42.7 9.1 49 84-133 4-52 (87)
107 3plu_A Ubiquitin-like modifier 88.5 0.74 2.5E-05 45.8 6.6 68 6-83 22-90 (93)
108 1wx8_A Riken cDNA 4931431F19; 88.4 0.89 3E-05 45.3 7.4 71 6-86 18-88 (96)
109 3dbh_I NEDD8; cell cycle, acti 88.3 1 3.5E-05 43.9 7.6 71 6-86 13-84 (88)
110 1syq_B Talin 1; cytoskeleton, 88.2 0.47 1.6E-05 33.8 3.5 24 619-642 2-25 (26)
111 2uyz_B Small ubiquitin-related 88.1 0.55 1.9E-05 44.9 5.4 74 1-85 1-74 (79)
112 2hj8_A Interferon-induced 17 k 88.0 0.95 3.3E-05 44.4 7.2 71 3-84 4-74 (88)
113 1wh3_A 59 kDa 2'-5'-oligoadeny 87.9 0.97 3.3E-05 44.0 7.2 72 2-84 6-77 (87)
114 2kan_A Uncharacterized protein 87.8 0.79 2.7E-05 45.7 6.5 70 4-83 14-84 (94)
115 1ntv_A Disabled homolog 1; bet 87.7 2.1 7.1E-05 46.7 10.3 77 332-408 60-141 (152)
116 1zvz_B Talin 1, metavinculin; 87.7 0.23 7.7E-06 37.6 1.8 24 862-885 2-25 (26)
117 1wgd_A Homocysteine-responsive 87.7 0.79 2.7E-05 45.5 6.4 76 1-84 5-83 (93)
118 1aqc_A X11; PTB domain; 2.30A 87.7 2.1 7.2E-05 47.6 10.5 74 332-405 63-159 (172)
119 2faz_A Ubiquitin-like containi 87.6 1 3.4E-05 42.9 6.9 71 4-84 3-74 (78)
120 2cy5_A Epidermal growth factor 87.4 2.9 9.8E-05 44.6 10.7 80 327-406 43-133 (140)
121 2dzi_A Ubiquitin-like protein 87.4 1.5 5.1E-05 41.9 8.0 71 4-85 8-78 (81)
122 3phx_B Ubiquitin-like protein 87.3 2.2 7.6E-05 40.7 9.2 46 87-133 4-49 (79)
123 1v5o_A 1700011N24RIK protein; 87.3 1.2 4.2E-05 45.0 7.7 73 4-86 8-84 (102)
124 3a9j_A Ubiquitin; protein comp 87.3 0.97 3.3E-05 42.5 6.6 68 8-85 3-71 (76)
125 1yx5_B Ubiquitin; proteasome, 87.2 0.96 3.3E-05 45.3 6.8 76 14-99 10-88 (98)
126 1ndd_A NEDD8, protein (ubiquit 87.1 1 3.6E-05 42.3 6.7 69 7-85 2-71 (76)
127 3mtn_B UBA80, ubcep1, ubiquiti 87.0 1.2 4E-05 43.0 7.1 70 7-86 5-75 (85)
128 3d8d_A Amyloid beta A4 precurs 87.0 2.4 8.2E-05 45.5 9.8 75 333-408 55-139 (148)
129 3phx_B Ubiquitin-like protein 86.8 1.3 4.5E-05 42.3 7.2 70 6-85 5-75 (79)
130 3so6_A LDL receptor adaptor pr 86.6 3.7 0.00013 43.6 11.5 82 332-413 43-134 (137)
131 3f0w_A NUMB-R, NUMB-like prote 86.6 2.1 7E-05 47.5 9.6 79 332-410 77-163 (168)
132 3v6c_B Ubiquitin; structural g 86.5 1.3 4.3E-05 43.8 7.1 71 6-86 18-89 (91)
133 3dbh_I NEDD8; cell cycle, acti 86.4 1.7 5.8E-05 42.3 8.0 46 87-133 12-57 (88)
134 3hk0_A Growth factor receptor- 86.4 0.64 2.2E-05 54.9 5.7 55 84-138 5-59 (256)
135 3ddc_B RAS association domain- 86.2 0.62 2.1E-05 50.4 4.9 46 88-133 77-123 (163)
136 2uyz_B Small ubiquitin-related 86.2 2 7E-05 40.9 8.2 47 87-134 3-49 (79)
137 1we7_A SF3A1 protein; structur 86.0 1.3 4.4E-05 45.9 7.2 73 2-84 24-105 (115)
138 1wyw_B Ubiquitin-like protein 85.8 2 6.9E-05 43.0 8.3 49 85-134 19-67 (97)
139 1j8c_A Ubiquitin-like protein 85.4 1.1 3.8E-05 47.1 6.4 70 6-85 33-102 (125)
140 2dzi_A Ubiquitin-like protein 85.4 2.8 9.7E-05 39.9 8.9 48 85-133 5-52 (81)
141 3n3k_B Ubiquitin; hydrolase, p 85.4 0.96 3.3E-05 43.7 5.5 69 7-85 5-74 (85)
142 2l7r_A Ubiquitin-like protein 85.2 1.2 4.1E-05 44.3 6.2 69 6-85 20-88 (93)
143 2ojr_A Ubiquitin; lanthide-bin 85.2 3.3 0.00011 42.5 9.7 47 86-133 34-80 (111)
144 1wy8_A NP95-like ring finger p 85.0 1.8 6E-05 42.4 7.3 70 5-84 7-79 (89)
145 2wyq_A HHR23A, UV excision rep 84.9 1.8 6.2E-05 41.8 7.3 72 4-84 6-78 (85)
146 2klc_A Ubiquilin-1; ubiquitin- 84.8 1.3 4.3E-05 44.8 6.3 68 7-84 27-94 (101)
147 1wx7_A Ubiquilin 3; ubiquitin- 84.8 1.4 4.7E-05 44.9 6.6 69 6-84 18-86 (106)
148 4dbb_A Amyloid beta A4 precurs 84.8 4.3 0.00015 44.7 11.0 76 332-407 52-133 (162)
149 1yqb_A Ubiquilin 3; structural 84.6 1.5 5.2E-05 44.2 6.7 69 6-84 23-91 (100)
150 1wyw_B Ubiquitin-like protein 84.5 1.2 4.1E-05 44.6 5.9 71 5-85 21-92 (97)
151 3v6c_B Ubiquitin; structural g 84.4 2.9 0.0001 41.1 8.6 47 86-133 16-62 (91)
152 1wia_A Hypothetical ubiquitin- 84.4 1.3 4.6E-05 44.0 6.2 69 3-85 7-76 (95)
153 3mtn_B UBA80, ubcep1, ubiquiti 84.0 3.1 0.00011 40.0 8.5 45 88-133 4-48 (85)
154 3k9o_B Ubiquitin, UBB+1; E2-25 83.9 3.2 0.00011 41.1 8.8 45 88-133 2-46 (96)
155 2ela_A Adapter protein contain 83.9 3.4 0.00012 46.0 9.8 75 332-406 69-155 (175)
156 2ej8_A DCC-interacting protein 83.9 3.1 0.0001 45.7 9.3 75 333-407 57-143 (160)
157 2bwf_A Ubiquitin-like protein 83.9 3.7 0.00013 38.6 8.9 44 88-133 5-48 (77)
158 3tca_A Amyloid beta A4 precurs 83.8 1.6 5.5E-05 52.3 7.7 52 86-137 33-84 (291)
159 2kk8_A Uncharacterized protein 83.7 1.8 6.2E-05 42.2 6.6 68 6-83 11-80 (84)
160 1v2y_A 3300001G02RIK protein; 83.7 0.76 2.6E-05 46.9 4.0 76 6-87 8-96 (105)
161 2fnj_B Transcription elongatio 83.7 2 7E-05 44.6 7.2 85 6-108 3-94 (118)
162 1p3r_A Disabled homolog 2; PTB 83.6 3.3 0.00011 45.4 9.5 77 332-408 59-140 (160)
163 4dwf_A HLA-B-associated transc 83.5 1.9 6.4E-05 42.3 6.8 68 6-84 6-74 (90)
164 4dwf_A HLA-B-associated transc 83.5 4 0.00014 39.9 9.2 48 85-133 3-50 (90)
165 1wju_A NEDD8 ultimate buster-1 83.5 1.7 5.7E-05 43.9 6.4 72 2-83 14-88 (100)
166 3t6g_B Breast cancer anti-estr 83.5 28 0.00096 39.5 16.6 86 822-907 128-213 (229)
167 2kzr_A Ubiquitin thioesterase 83.4 1.8 6.1E-05 42.3 6.5 74 5-86 2-77 (86)
168 3vdz_A Ubiquitin-40S ribosomal 83.4 3.5 0.00012 42.4 9.0 47 86-133 34-80 (111)
169 1yx5_B Ubiquitin; proteasome, 83.4 3.5 0.00012 41.2 8.8 44 89-133 2-45 (98)
170 4hcn_B Polyubiquitin, ubiquiti 83.3 1.6 5.4E-05 43.8 6.2 71 5-86 24-94 (98)
171 1uel_A HHR23B, UV excision rep 83.2 2.1 7E-05 42.7 7.0 69 7-83 2-72 (95)
172 4fbj_B NEDD8; effector-HOST ta 83.1 1.9 6.6E-05 42.2 6.6 70 7-86 2-72 (88)
173 4eku_A Protein-tyrosine kinase 83.0 1.1 3.9E-05 56.2 6.1 69 5-74 23-98 (392)
174 1uh6_A Ubiquitin-like 5; beta- 83.0 1.7 5.7E-05 44.0 6.1 68 6-83 29-97 (100)
175 1x1m_A Ubiquitin-like protein 82.9 1 3.6E-05 45.9 4.8 75 2-84 11-97 (107)
176 1wju_A NEDD8 ultimate buster-1 82.5 2.8 9.6E-05 42.3 7.5 46 87-133 15-64 (100)
177 3k9o_B Ubiquitin, UBB+1; E2-25 82.5 2 6.9E-05 42.6 6.6 68 7-84 3-71 (96)
178 3qij_A Protein 4.1; cytoskelet 82.3 0.98 3.3E-05 54.7 5.0 67 3-74 17-83 (296)
179 3n3k_B Ubiquitin; hydrolase, p 82.2 2.8 9.6E-05 40.3 7.4 45 88-133 4-48 (85)
180 1we6_A Splicing factor, putati 82.1 2.2 7.4E-05 43.9 6.8 73 3-85 27-102 (111)
181 1wf9_A NPL4 family protein; be 82.0 3.8 0.00013 41.8 8.5 76 7-86 9-94 (107)
182 3m62_B UV excision repair prot 81.7 1.6 5.4E-05 44.5 5.6 69 7-85 3-72 (106)
183 4hcn_B Polyubiquitin, ubiquiti 81.3 3.8 0.00013 41.0 8.1 49 84-133 19-67 (98)
184 1wy8_A NP95-like ring finger p 81.0 6.2 0.00021 38.4 9.4 47 86-133 6-54 (89)
185 1ttn_A DC-UBP, dendritic cell- 80.9 2.4 8.1E-05 43.2 6.5 69 6-84 24-93 (106)
186 4eew_A Large proline-rich prot 80.6 2.9 9.8E-05 40.8 6.8 68 6-84 18-86 (88)
187 1ef1_A Moesin; membrane, FERM 80.5 2 7E-05 51.7 7.0 66 3-74 1-66 (294)
188 1sif_A Ubiquitin; hydrophobic 80.5 4.6 0.00016 39.5 8.3 47 86-133 8-54 (88)
189 1v2y_A 3300001G02RIK protein; 80.1 1.7 5.9E-05 44.3 5.1 39 87-125 7-45 (105)
190 2dzj_A Synaptic glycoprotein S 80.0 3.4 0.00012 40.6 7.1 72 6-84 11-86 (88)
191 4fbj_B NEDD8; effector-HOST ta 80.0 4.6 0.00016 39.5 8.0 44 89-133 2-45 (88)
192 2kk8_A Uncharacterized protein 79.8 6.2 0.00021 38.3 8.8 50 84-134 7-56 (84)
193 3m63_B Ubiquitin domain-contai 79.7 1.1 3.8E-05 45.3 3.6 70 6-85 29-98 (101)
194 3vdz_A Ubiquitin-40S ribosomal 79.7 2.8 9.4E-05 43.1 6.6 70 6-85 36-106 (111)
195 1sif_A Ubiquitin; hydrophobic 79.6 3.1 0.00011 40.8 6.7 69 7-85 11-80 (88)
196 2faz_A Ubiquitin-like containi 79.1 5.9 0.0002 37.5 8.4 45 88-133 3-49 (78)
197 2wyq_A HHR23A, UV excision rep 79.0 8 0.00028 37.1 9.4 48 85-133 3-53 (85)
198 2i1j_A Moesin; FERM, coiled-co 78.9 2 6.8E-05 56.7 6.5 67 3-75 4-70 (575)
199 4eew_A Large proline-rich prot 78.9 7.3 0.00025 37.8 9.1 48 85-133 15-62 (88)
200 1wxv_A BAG-family molecular ch 78.7 3.5 0.00012 40.6 6.8 69 6-84 8-82 (92)
201 2kd0_A LRR repeats and ubiquit 78.6 3.2 0.00011 40.4 6.4 61 13-83 20-80 (85)
202 2al6_A Focal adhesion kinase 1 78.5 1.2 4.1E-05 55.8 4.2 65 5-72 9-76 (375)
203 2daf_A FLJ35834 protein; hypot 78.4 2.9 9.8E-05 43.3 6.1 72 3-84 15-86 (118)
204 4ajy_B Transcription elongatio 77.9 3.6 0.00012 42.6 6.7 81 8-106 5-92 (118)
205 2pjh_A Protein NPL4, nuclear p 77.7 3.2 0.00011 40.2 5.9 75 4-85 5-79 (80)
206 2ojr_A Ubiquitin; lanthide-bin 77.7 3.4 0.00012 42.4 6.6 71 4-85 36-106 (111)
207 1wm3_A Ubiquitin-like protein 77.4 8.2 0.00028 36.3 8.6 47 87-134 1-47 (72)
208 1ttn_A DC-UBP, dendritic cell- 76.4 6.7 0.00023 39.8 8.3 46 87-133 23-68 (106)
209 3qx1_A FAS-associated factor 1 75.9 8.4 0.00029 37.4 8.5 46 87-134 7-52 (84)
210 3u30_A Ubiquitin, linear DI-ub 75.6 4.4 0.00015 44.8 7.3 63 14-86 106-168 (172)
211 2io0_B Small ubiquitin-related 75.6 8.5 0.00029 38.1 8.5 49 85-134 3-51 (91)
212 2io1_B Small ubiquitin-related 75.1 7.8 0.00027 38.6 8.1 49 85-134 5-53 (94)
213 1v86_A DNA segment, CHR 7, way 74.7 6.3 0.00021 39.2 7.4 68 4-84 18-85 (95)
214 2ch7_A Methyl-accepting chemot 74.2 74 0.0025 38.0 18.4 11 1789-1799 158-168 (309)
215 2dzk_A UBX domain-containing p 74.1 14 0.00047 37.9 9.8 50 86-136 12-61 (109)
216 3b08_A Polyubiquitin-C, ubiqui 74.1 8.2 0.00028 41.3 8.8 44 89-133 2-45 (152)
217 2dzm_A FAS-associated factor 1 73.8 5.4 0.00018 40.3 6.6 71 3-84 9-79 (100)
218 2hj8_A Interferon-induced 17 k 73.5 8.7 0.0003 37.5 8.0 46 87-133 4-49 (88)
219 1wgy_A RAP guanine nucleotide 73.1 12 0.00042 37.8 8.8 52 87-139 9-60 (104)
220 3rt3_B Ubiquitin-like protein 73.0 5.3 0.00018 43.4 7.0 68 7-84 83-151 (159)
221 2d07_B Ubiquitin-like protein 72.6 11 0.00039 37.3 8.6 49 85-134 15-63 (93)
222 1yqb_A Ubiquilin 3; structural 72.3 12 0.00042 37.5 9.0 48 84-133 19-66 (100)
223 1h4r_A Merlin; FERM, neurofibr 72.1 3.6 0.00012 50.1 5.9 65 3-74 22-86 (314)
224 1se9_A Ubiquitin family; ubiqu 71.5 9 0.00031 40.2 7.8 72 3-80 16-90 (126)
225 1wz0_A Ubiquitin-like protein 71.5 12 0.00039 38.1 8.5 49 85-134 22-70 (104)
226 2kzr_A Ubiquitin thioesterase 71.2 6 0.00021 38.5 6.2 44 89-134 2-46 (86)
227 2kdi_A Ubiquitin, vacuolar pro 71.0 4.8 0.00016 41.5 5.7 69 6-84 10-79 (114)
228 1wj4_A KIAA0794 protein; UBX d 70.9 8.6 0.00029 40.4 7.6 49 84-134 40-88 (124)
229 1wx7_A Ubiquilin 3; ubiquitin- 70.8 12 0.00042 37.8 8.7 46 86-133 16-61 (106)
230 1wgg_A Ubiquitin carboxyl-term 70.4 7.8 0.00027 38.7 6.9 69 3-84 7-76 (96)
231 3a4r_A Nfatc2-interacting prot 70.2 18 0.00062 34.7 9.2 49 85-134 5-54 (79)
232 1uel_A HHR23B, UV excision rep 69.9 16 0.00054 36.2 9.0 44 89-133 2-48 (95)
233 3l0w_B Monoubiquitinated proli 69.1 6.8 0.00023 43.3 6.8 68 8-85 3-71 (169)
234 2l05_A Serine/threonine-protei 69.0 9.8 0.00033 37.6 6.8 50 84-134 14-63 (95)
235 2j0j_A Focal adhesion kinase 1 68.2 3.8 0.00013 55.2 5.4 64 6-72 10-76 (656)
236 4a20_A Ubiquitin-like protein 68.0 10 0.00035 38.1 7.1 71 4-84 20-93 (98)
237 2klc_A Ubiquilin-1; ubiquitin- 67.9 18 0.00063 36.2 9.1 45 87-133 25-69 (101)
238 2kan_A Uncharacterized protein 67.7 18 0.00063 35.8 8.9 46 86-133 14-59 (94)
239 3m62_B UV excision repair prot 67.7 8.2 0.00028 39.2 6.5 45 88-133 2-46 (106)
240 1uh6_A Ubiquitin-like 5; beta- 67.5 13 0.00045 37.5 7.8 48 86-134 27-74 (100)
241 1xwj_B Talin, metavinculin; ce 66.9 3.3 0.00011 31.4 2.4 23 1891-1913 3-25 (26)
242 1j8c_A Ubiquitin-like protein 66.5 20 0.00067 37.6 9.3 45 87-133 32-76 (125)
243 1v5t_A 8430435I17RIK protein; 65.5 6.9 0.00023 38.5 5.3 72 4-84 8-80 (90)
244 3q3f_A Ribonuclease/ubiquitin 65.2 14 0.00048 41.6 8.3 45 88-133 106-150 (189)
245 2kdi_A Ubiquitin, vacuolar pro 65.0 18 0.00061 37.2 8.5 46 87-133 9-54 (114)
246 3b1l_X E3 ubiquitin-protein li 68.5 1.3 4.6E-05 41.7 0.0 63 14-86 10-72 (76)
247 3plu_A Ubiquitin-like modifier 64.5 22 0.00075 35.4 8.5 42 84-125 18-59 (93)
248 2dhz_A RAP guanine nucleotide 63.9 8.8 0.0003 39.8 5.7 54 87-140 9-67 (120)
249 1wxm_A A-RAF proto-oncogene se 63.8 12 0.00041 36.4 6.2 48 86-134 6-53 (86)
250 1wx8_A Riken cDNA 4931431F19; 63.8 12 0.00041 37.0 6.7 46 86-133 16-61 (96)
251 2l7r_A Ubiquitin-like protein 63.6 15 0.00052 36.2 7.4 44 88-134 20-63 (93)
252 1we6_A Splicing factor, putati 62.7 14 0.00046 37.8 7.1 49 84-133 24-76 (111)
253 2eke_C Ubiquitin-like protein 62.0 20 0.00068 36.5 8.0 49 84-134 28-76 (106)
254 3q3f_A Ribonuclease/ubiquitin 61.5 12 0.00042 42.0 7.0 70 6-85 106-176 (189)
255 2kdb_A Homocysteine-responsive 61.4 17 0.0006 36.5 7.4 49 86-134 22-73 (99)
256 4dx8_A Integrin beta-1-binding 60.5 65 0.0022 34.6 11.6 92 302-407 42-149 (154)
257 1we7_A SF3A1 protein; structur 60.3 27 0.00093 35.8 8.9 49 84-133 22-80 (115)
258 2jx0_A ARF GTPase-activating p 59.4 39 0.0013 35.5 9.5 111 2010-2143 14-127 (135)
259 2gow_A HCG-1 protein, ubiquiti 58.8 15 0.00051 38.6 6.6 70 4-80 18-91 (125)
260 1n3h_A SHC transforming protei 58.4 9.9 0.00034 43.5 5.6 66 332-397 119-192 (207)
261 1c1y_B Proto-onkogene serine/t 58.0 18 0.00061 34.6 6.2 45 89-134 3-47 (77)
262 3b1l_X E3 ubiquitin-protein li 62.6 2.1 7.2E-05 40.4 0.0 37 89-125 2-38 (76)
263 1oqy_A HHR23A, UV excision rep 56.9 9.2 0.00031 47.5 5.4 69 6-81 8-77 (368)
264 3kyd_D Small ubiquitin-related 56.8 33 0.0011 35.4 8.6 49 85-134 38-86 (115)
265 2k8h_A Small ubiquitin protein 56.1 18 0.00061 37.2 6.5 50 84-134 23-72 (110)
266 2cr5_A Reproduction 8; UBX dom 55.9 31 0.001 35.3 8.3 46 87-134 23-68 (109)
267 3l0w_B Monoubiquitinated proli 55.6 33 0.0011 37.8 9.1 44 89-133 2-45 (169)
268 1wgr_A Growth factor receptor- 55.6 18 0.0006 36.5 6.1 38 3-41 9-46 (100)
269 2ysz_A Amyloid beta A4 precurs 55.4 20 0.00069 40.0 7.3 107 332-439 53-165 (185)
270 1v5o_A 1700011N24RIK protein; 54.9 29 0.00098 34.8 7.8 45 88-133 8-56 (102)
271 1vd2_A Protein kinase C, IOTA 54.8 34 0.0012 33.7 7.9 51 87-138 6-56 (89)
272 3ny5_A Serine/threonine-protei 54.7 21 0.00074 35.3 6.3 48 86-134 12-59 (96)
273 2kd0_A LRR repeats and ubiquit 54.2 38 0.0013 32.7 8.3 41 92-133 16-56 (85)
274 2dyq_A Amyloid beta A4 precurs 53.5 54 0.0018 35.2 9.8 76 331-406 52-137 (144)
275 3u5e_m 60S ribosomal protein L 53.2 2.8 9.7E-05 44.2 0.0 68 14-98 10-77 (128)
276 3suz_A Amyloid beta A4 precurs 52.7 46 0.0016 41.6 10.9 74 332-405 65-161 (388)
277 3dxe_A Amyloid beta A4 protein 52.5 52 0.0018 35.2 9.6 50 331-380 44-95 (140)
278 3ddc_B RAS association domain- 52.3 12 0.00039 40.8 4.5 49 8-59 81-130 (163)
279 1wia_A Hypothetical ubiquitin- 52.0 22 0.00075 35.1 6.3 43 87-133 7-49 (95)
280 2lxa_A Ubiquitin-like protein 52.0 17 0.00058 35.7 5.3 57 16-82 13-73 (87)
281 2al3_A TUG long isoform; TUG U 51.9 18 0.0006 35.7 5.3 71 7-87 11-82 (90)
282 1wgh_A Ubiquitin-like 3, HCG-1 51.3 53 0.0018 34.0 9.1 52 83-134 12-70 (116)
283 3t6g_B Breast cancer anti-estr 51.2 1.9E+02 0.0064 33.0 13.9 111 966-1076 106-219 (229)
284 2daf_A FLJ35834 protein; hypot 49.7 52 0.0018 34.1 8.6 74 87-203 15-89 (118)
285 3m63_B Ubiquitin domain-contai 49.2 16 0.00055 36.7 4.8 62 70-133 10-72 (101)
286 3zx6_A HAMP, methyl-accepting 49.0 4.4E+02 0.015 32.0 28.5 25 2126-2150 273-297 (341)
287 3a4r_A Nfatc2-interacting prot 47.2 32 0.0011 33.0 6.3 70 4-83 8-77 (79)
288 1wz0_A Ubiquitin-like protein 46.9 37 0.0013 34.4 7.0 72 4-86 25-96 (104)
289 2pjh_A Protein NPL4, nuclear p 46.5 11 0.00038 36.3 3.0 47 88-136 5-51 (80)
290 1wgh_A Ubiquitin-like 3, HCG-1 46.3 36 0.0012 35.3 6.9 69 4-79 17-89 (116)
291 2cs4_A Protein C12ORF2; GTP bi 46.1 15 0.00052 36.5 3.9 51 86-139 6-57 (95)
292 2uwq_A Apoptosis-stimulating o 44.9 20 0.00067 35.0 4.3 49 87-139 6-56 (86)
293 1wvh_A Tensin, tensin1; beta s 43.9 79 0.0027 33.5 9.1 72 331-402 38-132 (134)
294 1wxa_A Afadin, AF-6 protein; R 43.6 29 0.001 35.9 5.8 41 95-135 21-63 (116)
295 1wgd_A Homocysteine-responsive 43.0 52 0.0018 32.2 7.4 47 87-134 7-57 (93)
296 2io1_B Small ubiquitin-related 42.6 30 0.001 34.4 5.5 72 6-87 8-80 (94)
297 1rrb_A RAF-1 RBD, RAF proto-on 42.1 41 0.0014 33.9 6.2 46 88-134 19-64 (107)
298 3ai5_A Yeast enhanced green fl 41.9 37 0.0013 41.0 7.2 70 7-86 235-305 (307)
299 2io0_B Small ubiquitin-related 41.8 40 0.0014 33.3 6.2 76 1-86 1-77 (91)
300 3gm3_A Protein tyrosine kinase 41.1 2.7E+02 0.0093 29.9 12.5 115 963-1078 19-138 (153)
301 2dzk_A UBX domain-containing p 41.0 49 0.0017 33.7 7.0 79 4-89 14-93 (109)
302 1vd2_A Protein kinase C, IOTA 40.4 45 0.0015 32.9 6.2 64 4-73 7-70 (89)
303 3u5c_f 40S ribosomal protein S 40.0 6 0.00021 43.0 0.0 68 14-98 10-77 (152)
304 2gow_A HCG-1 protein, ubiquiti 39.8 51 0.0017 34.6 7.0 50 85-134 15-71 (125)
305 4dbg_A Ranbp-type and C3HC4-ty 39.7 78 0.0027 32.2 8.0 44 83-126 18-65 (105)
306 1z23_A CRK-associated substrat 39.6 4.1E+02 0.014 29.0 15.0 115 964-1079 19-151 (163)
307 3goe_A DNA repair protein RAD6 39.2 1.2E+02 0.0042 29.1 8.5 40 95-134 17-56 (82)
308 2d07_B Ubiquitin-like protein 38.7 40 0.0014 33.4 5.7 71 6-86 18-89 (93)
309 1wgu_A APBB2, amyloid beta (A4 38.5 91 0.0031 33.1 8.7 69 332-400 53-127 (136)
310 1z23_A CRK-associated substrat 38.5 1.9E+02 0.0067 31.5 11.3 90 1660-1749 55-152 (163)
311 2d4y_A HAP1, flagellar HOOK-as 37.8 47 0.0016 42.6 7.8 74 1330-1403 41-115 (463)
312 3au4_A Myosin-X; protein-prote 37.5 35 0.0012 44.8 6.6 62 3-69 216-277 (555)
313 3gm3_A Protein tyrosine kinase 37.3 4.2E+02 0.014 28.5 14.5 114 648-765 24-140 (153)
314 1s3s_G P47 protein; AAA ATPase 37.1 38 0.0013 35.6 5.5 49 86-134 51-99 (127)
315 1wm3_A Ubiquitin-like protein 36.3 46 0.0016 31.1 5.5 68 5-83 3-70 (72)
316 3qx1_A FAS-associated factor 1 36.2 60 0.002 31.3 6.4 73 4-84 8-81 (84)
317 2k8h_A Small ubiquitin protein 36.2 57 0.0019 33.4 6.5 72 4-86 27-98 (110)
318 1x1m_A Ubiquitin-like protein 35.9 80 0.0027 31.8 7.7 47 87-134 12-73 (107)
319 3u5e_m 60S ribosomal protein L 35.8 7.7 0.00026 40.8 0.0 37 89-125 2-38 (128)
320 3cf6_E RAP guanine nucleotide 35.3 47 0.0016 44.9 7.4 51 87-139 352-402 (694)
321 3ai5_A Yeast enhanced green fl 35.3 76 0.0026 38.3 8.4 48 85-133 231-278 (307)
322 2eke_C Ubiquitin-like protein 35.1 49 0.0017 33.7 5.8 70 4-85 32-101 (106)
323 2c5l_C Phosphoinositide-specif 34.6 80 0.0027 32.6 7.2 49 87-135 7-64 (117)
324 1wf9_A NPL4 family protein; be 33.7 48 0.0017 33.5 5.6 37 88-125 8-45 (107)
325 2jxx_A Nfatc2-interacting prot 32.9 98 0.0034 31.0 7.4 50 84-134 22-72 (97)
326 1rax_A Protein (RA-domain of R 31.6 2.4E+02 0.0082 28.9 9.8 53 85-137 26-83 (115)
327 1wxv_A BAG-family molecular ch 31.2 1.5E+02 0.0052 28.7 8.6 45 87-133 7-56 (92)
328 1v5t_A 8430435I17RIK protein; 30.4 1.1E+02 0.0037 29.8 7.3 44 87-132 7-51 (90)
329 2fnj_B Transcription elongatio 29.3 1.5E+02 0.0052 30.7 8.3 44 88-133 3-46 (118)
330 1q1o_A Cell division control p 29.2 82 0.0028 31.6 6.0 51 88-138 6-67 (98)
331 1oey_A P67-PHOX, neutrophil cy 28.7 1.3E+02 0.0044 29.3 7.1 48 86-136 4-51 (83)
332 2bps_A YUKD protein; ubiquitin 28.5 97 0.0033 30.0 6.3 73 6-83 5-80 (81)
333 2dzj_A Synaptic glycoprotein S 27.9 1.1E+02 0.0036 30.0 6.6 44 88-132 11-58 (88)
334 1wj4_A KIAA0794 protein; UBX d 27.8 85 0.0029 32.8 6.3 74 4-85 44-118 (124)
335 3pge_A SUMO-modified prolifera 27.6 1.4E+02 0.0047 33.9 8.3 48 85-134 27-74 (200)
336 3shq_A UBLCP1; phosphatase, hy 27.6 84 0.0029 38.2 7.2 68 4-81 6-74 (320)
337 1oqy_A HHR23A, UV excision rep 27.5 74 0.0025 39.5 6.7 47 86-133 6-55 (368)
338 3u5c_f 40S ribosomal protein S 27.5 13 0.00044 40.4 0.0 37 89-125 2-38 (152)
339 2yt0_A Amyloid beta A4 protein 26.1 98 0.0034 34.3 6.7 68 332-399 99-172 (176)
340 2daj_A KIAA0977 protein, COBL- 25.7 1.1E+02 0.0037 29.8 5.8 66 4-77 11-76 (91)
341 2l81_A Enhancer of filamentati 25.4 2.5E+02 0.0087 30.9 9.5 91 1659-1749 58-164 (176)
342 3voq_A Target of rapamycin com 25.2 3.6E+02 0.012 28.2 10.0 93 313-410 13-121 (125)
343 3tix_A Ubiquitin-like protein 24.9 92 0.0032 34.9 6.1 47 85-133 55-101 (207)
344 1se9_A Ubiquitin family; ubiqu 24.7 1.7E+02 0.0057 30.7 7.7 36 86-121 15-51 (126)
345 2bps_A YUKD protein; ubiquitin 24.6 2.5E+02 0.0084 27.2 8.3 51 86-136 3-57 (81)
346 3zx6_A HAMP, methyl-accepting 24.0 1E+03 0.035 28.7 33.0 59 825-883 147-206 (341)
347 1wgg_A Ubiquitin carboxyl-term 23.6 1.5E+02 0.0053 29.2 7.1 44 88-133 8-52 (96)
348 2kjr_A CG11242; UBL, ubiquitin 23.0 3.6E+02 0.012 26.6 9.5 49 85-134 13-63 (95)
349 2l76_A Nfatc2-interacting prot 22.8 1.6E+02 0.0055 29.3 6.7 42 84-126 18-59 (95)
350 2jx0_A ARF GTPase-activating p 22.7 6.9E+02 0.024 26.3 12.3 109 967-1080 18-131 (135)
351 2ylm_A Ubiquitin carboxyl-term 22.6 3.5E+02 0.012 35.1 12.1 117 14-135 252-391 (530)
352 1v86_A DNA segment, CHR 7, way 22.1 1.2E+02 0.004 29.9 5.8 39 86-125 16-54 (95)
353 1lfd_A Ralgds; RAL, effector i 21.9 5.2E+02 0.018 25.3 9.8 49 89-137 5-58 (87)
354 3dad_A FH1/FH2 domain-containi 21.2 78 0.0027 38.6 5.0 50 87-136 15-78 (339)
355 4gmv_A RAS-associated and plec 21.1 99 0.0034 36.9 5.9 37 3-40 31-67 (281)
356 1v6e_A Cytoskeleton-associated 20.8 3.5E+02 0.012 26.3 9.0 46 88-134 8-54 (95)
357 1s3s_G P47 protein; AAA ATPase 20.8 1.3E+02 0.0044 31.5 6.0 70 4-80 53-122 (127)
358 2l81_A Enhancer of filamentati 20.7 8.8E+02 0.03 26.8 13.6 89 991-1079 60-163 (176)
359 2cr5_A Reproduction 8; UBX dom 20.4 1.5E+02 0.0052 30.1 6.3 73 4-84 24-96 (109)
360 2kj6_A Tubulin folding cofacto 20.4 4.3E+02 0.015 26.2 9.5 46 88-134 15-62 (97)
361 1syq_B Talin 1; cytoskeleton, 20.3 96 0.0033 22.5 3.2 22 745-766 2-23 (26)
362 4a20_A Ubiquitin-like protein 20.1 3E+02 0.01 27.4 8.2 48 85-133 17-67 (98)
No 1
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=100.00 E-value=1.9e-67 Score=620.00 Aligned_cols=322 Identities=62% Similarity=0.819 Sum_probs=308.8
Q ss_pred cCCCchhHHHHHHHhhhhhhhcHHHHHHHHhcCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q psy15599 1749 AGSRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAA 1828 (2347)
Q Consensus 1749 ~g~~G~qac~~a~~~vsgii~dLd~ti~fA~ag~l~~~~~~~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~aa 1828 (2347)
..+|||||||+|+++|+|||+||||+||||++|+|++++ +++|.+||++|++++|+|||+++.||++++++||+||+++
T Consensus 9 ~~~~GtqaC~~A~~~v~~ii~DLdtt~lFA~AGtL~~~~-~~~f~~~~e~Ilk~ak~Lve~~~~Lv~~a~~tqe~La~aa 87 (332)
T 3dyj_A 9 DPFTGTQACITAASAVSGIIADLDTTIMFATAGTLNREG-AETFADHREGILKTAKVLVEDTKVLVQNAAGSQEKLAQAA 87 (332)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCT-TCCGGGTHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 468999999999999999999999999999999999997 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q psy15599 1829 QNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSL 1908 (2347)
Q Consensus 1829 ~~~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~a~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~l 1908 (2347)
++++++|++|++++|.||+++++.||++||+|||++|||+.+|++||++||.++|+|.+||+|++||++||+|++||++|
T Consensus 88 ~~~a~~i~~La~~vK~gAAsl~~~d~~tQv~lLna~kdVa~al~~Li~atK~A~G~~~~dpa~~~Lk~aAk~mv~nV~sL 167 (332)
T 3dyj_A 88 QSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSL 167 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccchhHHHHHHHHHHHHHHhcCCccccCCCCCHHHHHHhhcchhHHHHHHHHcCCCCChhHHHHHHhhH
Q psy15599 1909 LKTVKAVEDEHTRGTRALESTIEAIAQEIRALNSVEQVKSTASPEELVRCTKPITQATAKAVAAGNSCKQEDVIVAANMG 1988 (2347)
Q Consensus 1909 l~tv~~v~~e~~rgt~ale~~~~~I~~~~~~lds~~~~~~~~tpe~lls~~~~~t~at~~ava~g~~~~q~dvI~~an~~ 1988 (2347)
|+||++||||++||||+||++|++|++|+..|++|..+.+..+||+|++++++++.++.++|++|++|.|+|||.++|.+
T Consensus 168 lktVk~vede~~rG~RaLEaai~~I~~el~~~~s~~~p~~~~tpE~li~~ak~vt~atakaVaA~ns~~qeDii~aan~~ 247 (332)
T 3dyj_A 168 LKTVKAVEDEATKGTRALEATTEHIRQELAVFCSPEPPAKTSTPEDFIRMTKGITMATAKAVAAGNSCRQEDVIATANLS 247 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHccCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhccCcchHHHHHHHHHHHH
Q psy15599 1989 RKAISDMLAVCKGCS-NAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQALPPISRRIAQSLTELVS 2067 (2347)
Q Consensus 1989 ~~aI~dll~~~Kg~a-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~s~~v~~~~~~l~~ 2067 (2347)
|++|+|||.+||+++ ++.++++.+.++++.+|+|+..|++||..++..+++|++ +.|++|.++||+|+++|++|++
T Consensus 248 r~aV~dll~~~k~aa~~~~~~~e~r~~~~~~~k~~a~~~~~LL~~v~~~~~~P~~---~~k~~L~~~Sr~VA~aVteLV~ 324 (332)
T 3dyj_A 248 RRAIADMLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPNP---DLKQQLTGHSKRVAGSVTELIQ 324 (332)
T ss_dssp HHHHHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 554477999999999999999999999999999988854 8999999999999999999999
Q ss_pred HHHHhcC
Q psy15599 2068 IAEQLKG 2074 (2347)
Q Consensus 2068 ~~~~l~~ 2074 (2347)
+++.|||
T Consensus 325 aa~~lkG 331 (332)
T 3dyj_A 325 AAEAMKG 331 (332)
T ss_dssp HHHTTC-
T ss_pred HHHhCCC
Confidence 9999986
No 2
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=100.00 E-value=1.5e-65 Score=646.10 Aligned_cols=371 Identities=67% Similarity=1.123 Sum_probs=343.8
Q ss_pred CcceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcc
Q psy15599 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDE 80 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~ 80 (2347)
|++++|||+|+ +++|||+|+|+|+|+|+|++|||++++.+.++|+||||||++++|++++||+++++|++|++++|+.
T Consensus 1 ~~~~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~ 78 (371)
T 3ivf_A 1 MVALSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDT 78 (371)
T ss_dssp -CCEEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCE
T ss_pred CccEEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCce
Confidence 89999999998 9999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhh
Q psy15599 81 LEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKER 160 (2347)
Q Consensus 81 L~~~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~ 160 (2347)
++++++++.++|+||||+.+++.||+++|++|+++.||.+|||++.++||||+...+++
T Consensus 79 l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~--------------------- 137 (371)
T 3ivf_A 79 MEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEK--------------------- 137 (371)
T ss_dssp EEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC-------------------------
T ss_pred eeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccc---------------------
Confidence 99999999999999999999999999999999999999999999999999998764211
Q ss_pred hHHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHH
Q psy15599 161 DLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDL 240 (2347)
Q Consensus 161 ~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ 240 (2347)
.++...||++.+++++|++.++++|+|||||||.+......|+++++|+|.|+++||++|++||+.++
T Consensus 138 ------------~~~~~~wL~~~k~l~~q~~~~~~~l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~c~~e~ 205 (371)
T 3ivf_A 138 ------------KDDELNWLDHGRTLREQGVEEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDK 205 (371)
T ss_dssp ------------------CCCTTSBTGGGTCCTTCEEEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ------------cchHHHHHhcCchhHhhCCCCCceEEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceeecCHHH
Confidence 02345899999999999988889999999999987666568999999999999999999999999999
Q ss_pred HHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEE
Q psy15599 241 ACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFF 320 (2347)
Q Consensus 241 ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F 320 (2347)
+++||||++|+++|||++..|.++|+.+++|+|+.+++.+. +++|.+.|++++|+++.+|+.+||++|++||+||++||
T Consensus 206 a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~-e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f 284 (371)
T 3ivf_A 206 ACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKG-ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFF 284 (371)
T ss_dssp HHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSCH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEE
T ss_pred HHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCchH-HHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCcEEE
Confidence 99999999999999999999999999999999999988777 88999999999999999999999999999999999999
Q ss_pred EEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCcCcEEEEechHHHHHHHHHH
Q psy15599 321 LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQIQQLIA 400 (2347)
Q Consensus 321 ~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~q~k~I~~LI~ 400 (2347)
.|+.+.+|++.+.+++||||++||+++++++++++..|||++|.+|+++++.|+|.+++.....|.|+|+++++|..||.
T Consensus 285 ~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~f~I~~~~~~~~~~~~~T~~~~~I~~Li~ 364 (371)
T 3ivf_A 285 LVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIA 364 (371)
T ss_dssp EEEEECTTSSCEEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEEETTEEEEECGGGSSSCEEEECSCHHHHHHHHH
T ss_pred EEEEeccCCCCCccEEEEEcCCcEEEEcCCCCceEEeeehhheeeeecCCCEEEEEECCccCcEEEEECChHHHHHHHHH
Confidence 99977567777889999999999999999999999999999999999999999999998766689999999999999999
Q ss_pred HHHHHHH
Q psy15599 401 GYIDIIL 407 (2347)
Q Consensus 401 gYi~l~l 407 (2347)
+||++|+
T Consensus 365 ~Yi~~i~ 371 (371)
T 3ivf_A 365 GYIDIIL 371 (371)
T ss_dssp HHHHC--
T ss_pred HHHHHhC
Confidence 9999874
No 3
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=100.00 E-value=6e-62 Score=583.08 Aligned_cols=304 Identities=51% Similarity=0.867 Sum_probs=300.9
Q ss_pred cCCChhhhHHHHHHHHhhccccCCCCCCCCcccHHHHHHHHHHhhhhHHHHHHHHHHHhhccCcchhhhhhhhhHHhhhh
Q psy15599 1081 ALPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICG 1160 (2347)
Q Consensus 1081 aapg~~E~D~Al~~I~~l~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~lg~amaql~~~a~~~~~~~~g~s~~~~a~al~~ 1160 (2347)
.+||++|||+|+|.|+.++.+|+++++|+|+++||+|++.|++++|.||++|++|.+++++||+.|||.+++++++++|+
T Consensus 6 ~a~gq~ecd~Al~~i~~~~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~Lg~~m~~l~~~a~~~~~~~~g~a~~~~a~al~~ 85 (309)
T 2x0c_A 6 TKHGQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALCG 85 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTCCCSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhhhHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhhhhhccccccccccCCcchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhhhcC
Q psy15599 1161 LCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSK 1240 (2347)
Q Consensus 1161 L~eaaa~aa~~vavsd~~s~~~~~~liD~~~~~ra~~~I~~a~~~l~~~~~~~~q~l~~a~~ia~~t~~l~~~c~~as~~ 1240 (2347)
|+|+++|+||+|||+||+|+||+|||||+++|.|+.+.|+++|..+.+|..+++++|.+|+.|++|+..||+.||.++.+
T Consensus 86 Lteaa~~aaylvgVs~p~s~~g~~glvD~~~~~ra~~~i~~ac~~~~~~~~~q~~vL~~A~~va~~t~~L~~~cr~as~~ 165 (309)
T 2x0c_A 86 FTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEPGCTQAQVLSAATIVAKHTSALCNSCRLASAR 165 (309)
T ss_dssp HHHHHHHHHHHHHHHSTTCBCCBCCSSCSHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhccccccccCccccchHHHHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhhhhccCchhhhhcccccCchhhhh
Q psy15599 1241 TTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTA 1320 (2347)
Q Consensus 1241 ~~n~~~~~~~~~~ak~v~~at~~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l~~~as~~efa~~~~~is~~~~~~ 1320 (2347)
+.||..|+||++++|+|++++++||++||.++..|++.+|++|.++++||.+|+++|+.|+++|||++++++|+++++.+
T Consensus 166 ~~n~~~k~ql~~~ak~va~st~~lV~~iK~ld~~~~~~~r~~~~~aa~~L~~Av~~Lv~~A~spefa~~~~~is~~~~~a 245 (309)
T 2x0c_A 166 TANPTAKRQFVQSAKEVANSTANLVKTIKALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAA 245 (309)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSCBCCBCCHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcChhhhhcccccChhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCCCcH
Q psy15599 1321 QEPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQK 1384 (2347)
Q Consensus 1321 q~~iv~~~k~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aPGQk 1384 (2347)
|+|||+++|+|+++|++||.+||+++.||+||+.||+|+.|+|+||||||+||++||++|||||
T Consensus 246 q~~il~a~r~v~~~s~~ll~taK~la~~P~dp~~~~~La~~ar~VSdsI~~Li~ai~~~aPGQ~ 309 (309)
T 2x0c_A 246 MEPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPGQL 309 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 4
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=100.00 E-value=6.4e-56 Score=617.42 Aligned_cols=880 Identities=16% Similarity=0.204 Sum_probs=713.2
Q ss_pred CchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy15599 990 ANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVAD 1069 (2347)
Q Consensus 990 ~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~~ 1069 (2347)
.+|...++.|+.++..|+..++++|++++|+..|.+|+.+++++...+.+|+.++|.+.+||.++..+++|..++|.|.+
T Consensus 38 ~~l~~~~~aV~~A~~~LV~~g~~~A~~~~D~~lk~~m~~A~~~v~~a~s~L~~aak~l~~dp~s~~~r~~Li~aAR~vl~ 117 (1066)
T 1tr2_A 38 PDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILS 117 (1066)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCTTCTTTTTTTHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCChh---hhHHHHHHHHhhccccCCCCCCCCcccHHHHHHHHHHhhhhHHHHHHHHHHHhhccC--
Q psy15599 1070 SINNLLNICTSA-LPGQK---ECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSE-- 1143 (2347)
Q Consensus 1070 sin~Lv~a~~~a-apg~~---E~D~Al~~I~~l~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~lg~amaql~~~a~~~~-- 1143 (2347)
+++.|+..|..+ + .+ +||.+++.|+.+... +|.++|+...|.||.+|.+|..+++...
T Consensus 118 sv~~LL~~~D~a~v--~kl~~a~~~v~~~L~~~~~~--------------~~~~elv~~~k~l~~~m~~l~~~~~~r~~~ 181 (1066)
T 1tr2_A 118 GTSDLLLTFDEAEV--RKIIRVCKGILEYLTVAEVV--------------ETMEDLVTYTKNLGPGMTKMAKMIDERQQE 181 (1066)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHGGGC--------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998876 4 55 799999999977762 5688999999999999999999999753
Q ss_pred c--chhhhhhhhhHHh---hhhhhhhHhhhhhhhhhcccc------ccccccCCcchHHHHHHHHHHHHHHhhcCCCCCc
Q psy15599 1144 Y--DAFGKCVNNVSDS---ICGLCEGVAQASYLVAISEAT------SNTANKGLIDQTQFSRAANAIKHACNTLTNPSTT 1212 (2347)
Q Consensus 1144 ~--~~~g~s~~~~a~a---l~~L~eaaa~aa~~vavsd~~------s~~~~~~liD~~~~~ra~~~I~~a~~~l~~~~~~ 1212 (2347)
+ ..++..+...... ++.+..++ ..+|+. +.++. +..++.+++ .++.++.+.|..+|+....+...
T Consensus 182 l~d~~~r~~L~~A~~~L~~~~~~L~~a-~k~~~~-~~~~~~~~~~~A~~~r~~~~--~~~~~a~~~Ii~a~q~~~~~~~~ 257 (1066)
T 1tr2_A 182 LTHQEHRVMLVNSMNTVKELLPVLISA-MKIFVT-TKNSKNQGIEEALKNRNFTV--EKMSAEINEIIRVLQLTSWDEDA 257 (1066)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHTSSSHHHHHHHHHHHH--HHHHHHHHHHHHHHTCCSSCSSS
T ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHc-CCCCCCcccHHHHHhhhHHH--HHHHHHHHHHHHHHhcCCCCccc
Confidence 2 4566655555555 44444444 677777 54432 333344455 35688899999999977766556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcCCCChhH---------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHh
Q psy15599 1213 QQQILTAATVIAKHTSSLCNACRIASSKTTNPVA---------KRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVC 1283 (2347)
Q Consensus 1213 ~~q~l~~a~~ia~~t~~l~~~c~~as~~~~n~~~---------~~~~~~~ak~v~~at~~Lv~~ik~~~~~~~~~~~~~~ 1283 (2347)
+++ ..++.+++++..+++.|..++....||.. +++|++.++.++.. ..|.++..|
T Consensus 258 ~~~--~~~~~l~~~~~~~~~~~~~a~~~~~~p~a~p~~~~~~a~r~~i~~a~~~a~~--------------~~p~~~~~~ 321 (1066)
T 1tr2_A 258 WAS--KDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQILDEAGKVGEL--------------CAGKERREI 321 (1066)
T ss_dssp HHH--HHHHHHHHHHHHHHTTHHHHHHHHSCSSCCTTSHHHHHHHHHHHHHHHHHTT--------------SCHHHHHHH
T ss_pred cch--hhHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchhHHHHHHHHHHHHHHHHh--------------cCcccHHHH
Confidence 655 67889999999999999988877667665 77777777776643 367899999
Q ss_pred hhhcchHHHHHhhhhhcc-----CchhhhhcccccCchhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHhhcCCCC
Q psy15599 1284 TQATKPLLDAVDSLVSFA-----YSPEFVNRSSHFGDSTLTAQEPILSAGEAIIE-------SSCSMIKTAKSLAVSPKD 1351 (2347)
Q Consensus 1284 ~~~~~~L~~a~~~l~~~a-----s~~efa~~~~~is~~~~~~q~~iv~~~k~i~~-------ss~~ll~tAk~la~~P~d 1351 (2347)
...+.++.+.+++|..|+ +.|+|...+..|+.+..+. .+++..++.+.+ ++.+||.+|+++..+|++
T Consensus 322 ~~l~~~l~~~~~~L~~Lr~~g~G~~~~a~~~~~~i~~~l~~~-~~~~~~~~~~~e~~~~~~~~~aqli~aA~~~~~~P~~ 400 (1066)
T 1tr2_A 322 LGTCKMLGQMTDQVADLRARGQGSSPVAMQKAQQVSQGLDVL-TAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNG 400 (1066)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTGGGSHHHHHSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccchhHHHHHHHHHhhccCCCc
Confidence 999999999999998887 8899999999998887766 788887777666 889999999999999999
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHhhhcCC---Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhh
Q psy15599 1352 RPTWKLLADHSKQVSDSIKRLVTSIRDVAP---GQ-------KECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASL 1421 (2347)
Q Consensus 1352 p~~~q~La~aaraVsdsI~~Lv~a~~~~aP---GQ-------kECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~~~~~~s~ 1421 (2347)
++. + .++|++|+.+++..+| || ++||+ |+.+...+.+ ++..+++..++.+
T Consensus 401 ~~~---~-------a~alk~l~~~~r~~a~~~~~~~~~~~il~~~~~-i~~~s~~l~~-----~~~~~~~~~~~~~---- 460 (1066)
T 1tr2_A 401 GPE---G-------EEQIRGALAEARKIAELCDDPKERDDILRSLGE-ISALTSKLAD-----LRRQGKGDSPEAR---- 460 (1066)
T ss_dssp CHH---H-------HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH-HHHHHHHHHH-----TTTSCCCTTTTSH----
T ss_pred chH---H-------HHHHHHHHHHHHHhccccCCchhHHHHHHHHHH-HHHHHHHHHH-----HHhhccCCChhHH----
Confidence 883 4 3477777777777655 99 77887 7777776666 3334555554444
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHH-----------------------HHhhHHHHh-hhHHHHhhhhchhhhhHHHhhhc
Q psy15599 1422 QMSAEKTEQAANEILTRLEPLRQA-----------------------AKYQAESIA-FSVNQLVTSFDSLASDSMNVASN 1477 (2347)
Q Consensus 1422 ~~~~e~~~~~~~~l~~~i~~l~~A-----------------------~~~~~e~l~-~~v~~~~~~~~~l~~~a~~aas~ 1477 (2347)
.+++++.++..++...|+++... .+.++.++| +.++.+..++.++. +.
T Consensus 461 -~~~~~v~~al~~l~~~ld~ai~~~~~~~~~~~~~~~~~qa~~~l~~p~~~~~~~~~~a~~~l~~~~~~la-------~~ 532 (1066)
T 1tr2_A 461 -ALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLA-------NV 532 (1066)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHCTTSCCCSHHHHHHHHHHHHHHHHH-------TT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHHH-------Hh
Confidence 38999999999999988877522 233445555 77777777666666 66
Q ss_pred ccChhhhhHHHHhhhHHHHHHHHHHHHHHhh-CCCCCCCccccchHHHHHHHHHHHHHHHhhhhhhcccccccccccccc
Q psy15599 1478 LIHSKQQMTLLDQTKTVAECLLQVLHLIKEA-GGNPDAVNIHPDLDESIEATKEALSDITSSLDHFTGVVNTFVDSITKS 1556 (2347)
Q Consensus 1478 ~~~~~~q~~~~~~sK~v~es~~~L~~~aK~~-~gnp~~~~~~~~~~~a~~~~~eav~~l~~~~~~~a~~~~~~~~~~~~~ 1556 (2347)
+.++. |.++++++|+|.++..+|++.++.. ||||++. ++...|.+++.+|...+.+.+
T Consensus 533 ~~~~~-r~~~l~~~k~v~~~s~qLl~~a~~~~~~~P~a~-------~~~~~L~~a~~~L~~~i~~~a------------- 591 (1066)
T 1tr2_A 533 MMGPY-RQDLLAKCDRVDQLTAQLADLAARGEGESPQAR-------ALASQLQDSLKDLKARMQEAM------------- 591 (1066)
T ss_dssp SCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCSSCSHHH-------HHHHHHHTHHHHHHHHHHHHH-------------
T ss_pred cCchh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchH-------HHHHHHHHHHHHHHHHHHHHH-------------
Confidence 77774 8899999999999999999665555 8999543 466778888888888766433
Q ss_pred cccCCCCCCCCCcccccccccchhcccccCCCCCcccccchhhhHHHHHHHHhhcCCCCCCCCCccccccccchhHhHHH
Q psy15599 1557 MQQIPDPNQPNSHYASDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTR 1636 (2347)
Q Consensus 1557 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~d~I~~~~~~l~~~~~~~~~~~~~~~~s~~~~qt~ 1636 (2347)
++.|. .+|.+|++.
T Consensus 592 ---------------------------------------------~~~i~---------------------d~f~d~~~~ 605 (1066)
T 1tr2_A 592 ---------------------------------------------TQEVS---------------------DVFSDTTTP 605 (1066)
T ss_dssp ---------------------------------------------HHHHH---------------------HHTTCCSHH
T ss_pred ---------------------------------------------HHHHh---------------------hhHhhhhhH
Confidence 23332 267777765
Q ss_pred HHHHHHHHHHHhHHhhhhcccCchhhhhhHHHHHHHHhhhhhHHhhhhhhCC-ChhhhhHHHHHHhhHHHHHHHHHHHHh
Q psy15599 1637 MVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASAS-NPEVSGRLCGAVHDLGTACINTVTMAA 1715 (2347)
Q Consensus 1637 m~~~ak~ia~~~~~~~~~a~~~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~-~~~~~~~i~~~~~~l~~s~~~lv~aa~ 1715 (2347)
.+.|+..+.++. ++.+++++++.++..|.++|..|+..++.+++.++ |++...+|+..++.|+..|.+|+.+++
T Consensus 606 ----l~~L~eaa~~~~-~~~~~~~~~~~~a~~~~~~~~~L~~~a~~~~~~~~~~~~~~~~i~~aa~~l~~~t~~lv~aar 680 (1066)
T 1tr2_A 606 ----IKLLAVAATAPP-DAPNREEVFDERAANFENHSGKLGATAEKAAAVGTANKSTVEGIQASVKTARELTPQVVSAAR 680 (1066)
T ss_dssp ----HHHHHHHHHSCT-TCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 677777776664 56788999999999999999999999999999999 899999999999999999999999999
Q ss_pred hccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhhhhhhcHHHHHHHHhcCCCccccCCchhhH
Q psy15599 1716 TCQTS-GDDYTHREFADTNRVLAEKVSQVLYALQAGSRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFAD 1794 (2347)
Q Consensus 1716 ~~~~~-~d~~t~~~l~~~ar~v~e~v~~l~aal~~g~~G~qac~~a~~~vsgii~dLd~ti~fA~ag~l~~~~~~~~f~d 1794 (2347)
....+ .|+..++.|.+.++.+.++|.+|+ +.|.+ |.|+| +||+++|
T Consensus 681 ~~~~~p~n~~Ak~~l~~~~~~~~~~v~~L~-----------------~~V~~-i~dl~--~f~aas~------------- 727 (1066)
T 1tr2_A 681 ILLRNPGNQAAYEHFETMKNQWIDNVEKMT-----------------GLVDE-AIDTK--SLLDASE------------- 727 (1066)
T ss_dssp HTTSSCSCTHHHHHHHHHHHHHHHHHHHHH-----------------HHHHT-TSCHH--HHHHHHH-------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhh-hcCHH--HHHHHHH-------------
Confidence 99888 689999999999999999999998 44477 78999 9999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCChh-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15599 1795 HRENILKTAKALVEDTKTLVAGAASSQE-QLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGD 1873 (2347)
Q Consensus 1795 ~~~~i~~~ak~lv~~~~~lv~~~~~~qe-~La~aa~~~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~a~~~ 1873 (2347)
..+.++++.++.+...+++ +|..+|+.++.++..|.+++|.++.+ ++||+.|+.|++++|+|..++.+
T Consensus 728 ---------~~i~ed~~~~~~a~~~~~~~~l~~~a~~i~~~~~~l~~vv~~~~~~--s~~p~~q~~v~~a~k~l~~s~~~ 796 (1066)
T 1tr2_A 728 ---------EAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVEN--SEDPKFREAVKAASDELSKTISP 796 (1066)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--BCCHHHHHHHHHHHHHHHHTHHH
T ss_pred ---------HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhhH
Confidence 2788999999988876666 99999999999999999999999998 67999999999999999999999
Q ss_pred HHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH---------HHHHHHhcCCcc
Q psy15599 1874 LIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEA---------IAQEIRALNSVE 1944 (2347)
Q Consensus 1874 li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~tv~~v~~e~~rgt~ale~~~~~---------I~~~~~~lds~~ 1944 (2347)
||.++|.+.|+|.|++.+.+|+++++.|.++|.+|+++|+.+++|..+|+-.++.+... +..+...+..|.
T Consensus 797 li~~aK~~a~~p~d~~~~~~l~~~~k~v~~~V~~l~~av~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1066)
T 1tr2_A 797 MVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPP 876 (1066)
T ss_dssp HHHHHHHHHHCTTCTTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC-------------------------------
T ss_pred HHHHHHHHhcCCCChHHHHHHHHhhHHHHHHHHHHHHHHhccCCccCCCCccHHHHhhcccCCCCCCCCcccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999998655543210 111333333332
Q ss_pred ccCC--------------------------------CCCHHHHHHhhcchhHHH---HHHHHcCCCCChhHHHHHHhhHH
Q psy15599 1945 QVKS--------------------------------TASPEELVRCTKPITQAT---AKAVAAGNSCKQEDVIVAANMGR 1989 (2347)
Q Consensus 1945 ~~~~--------------------------------~~tpe~lls~~~~~t~at---~~ava~g~~~~q~dvI~~an~~~ 1989 (2347)
.+.- ..++++|++.+|.++..+ .+++. |.+++..|+|.+++.++
T Consensus 877 ~p~e~~e~~~~~~~~~~~~~~i~~~~~~l~~e~~kW~~~~ndiI~~AK~ma~~m~~m~~~~~-g~~~~~~d~i~~Ak~ia 955 (1066)
T 1tr2_A 877 PPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVR-GGSGTKRALIQCAKDIA 955 (1066)
T ss_dssp --CCCCCCCCCCCSSCSCCHHHHHHHHHHHHHHTTBCCTTCHHHHHHHHHHHHHHTHHHHTS-CCSSHHHHHHHHHHHHH
T ss_pred CChhhhhhccchhcccccchhHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHH
Confidence 2210 367889999999998887 66665 66799999999999999
Q ss_pred HHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHc---CCCCCC-cchhhhccCcchHHHHHHH
Q psy15599 1990 KAISDMLAVCKGCS-NAAETHELCVKTLDAGQEVAVQY--RELLQTVLHIL---SRPGDR-IADSKQALPPISRRIAQSL 2062 (2347)
Q Consensus 1990 ~aI~dll~~~Kg~a-~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~---~~~~~~-~~~~~~~~~~~s~~v~~~~ 2062 (2347)
.++.+|+..+|.++ ... +...+..++..|..+...+ +++++.+|... +++... +++.++.|+.++|.+..+|
T Consensus 956 ~~~~~l~~~~r~~a~~~~-d~~~k~~ll~~~~~i~~~~~QL~ils~VKa~~~g~~~~~~~~~~~a~~~Li~~aknLm~aV 1034 (1066)
T 1tr2_A 956 KASDEVTRLAKEVAKQCT-DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSV 1034 (1066)
T ss_dssp HHHHHHHHHHHHHHHTBC-BHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999998 555 6788999999999999999 99999999877 333211 1246889999999999999
Q ss_pred HHHHHHHHHh
Q psy15599 2063 TELVSIAEQL 2072 (2347)
Q Consensus 2063 ~~l~~~~~~l 2072 (2347)
.++++.++..
T Consensus 1035 ~~~V~aa~~a 1044 (1066)
T 1tr2_A 1035 KETVREAEAA 1044 (1066)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 5
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=100.00 E-value=1.5e-57 Score=527.60 Aligned_cols=299 Identities=48% Similarity=0.694 Sum_probs=282.4
Q ss_pred ccCCCCcccccchhhhhchhHHHHhhhhHhhHHHHHHHHHhhccccCCCCCCCCccchhHHHhhhhhhhhhHHHHHHHHH
Q psy15599 489 IAHSPTTTQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQIAAMN 568 (2347)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~q~al~~~i~~~~~~v~~a~~el~~~~~~~~~~~d~as~~w~~~~~~~~k~~v~~~~~a~~ 568 (2347)
+||+|| +.+|||||+|||++|+++|+.+..||+.|.++|+||+|++|.+||+|+||++||+|+++++||+
T Consensus 1 ~~~~~~----------~~~~q~al~~ti~~~~~~~~~a~~~l~~~~~lp~lg~D~as~~W~~~~ld~sk~~V~s~vaA~~ 70 (308)
T 1sj8_A 1 RGHMPP----------LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQVDAIT 70 (308)
T ss_dssp ----CC----------CCHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCCCCCSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC----------cchHHHHHHHHhhhHHHHHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCC--CccchhhhhhhhhcchhhHhhhhHHHHhcCCC----hHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15599 569 AATAQVVTMTSGEVT--DYSGVESAITSISHTLPEMSKGVRMLAALTPS----GDELLDAARKLCFAFTDLLKAAQPHSN 642 (2347)
Q Consensus 569 a~~a~~~~~~a~~~~--d~~~v~~~i~~i~s~~~~~~~~~k~la~l~~~----~~~L~~aar~La~a~s~ll~~~~p~~~ 642 (2347)
++||+|||+|+|+|+ ||++||++|+||+|||+||+++||+|++||+| |++|++|+|.|+++|++|+++..|.++
T Consensus 71 aata~vv~lt~~~~~~~d~~avg~aittI~snl~e~~~~vk~laaL~~d~~~~~~~Ll~AAk~l~~Ais~Llkaa~~~~~ 150 (308)
T 1sj8_A 71 AGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASA 150 (308)
T ss_dssp HHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHhHhhhccCCCccccccchhhhHHHHHHhhhHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 999999999998887 99999999999999999999999999999855 789999999999999999999999999
Q ss_pred hhHhHHHHHHhHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-hhhhHHHHHHHHHHHH
Q psy15599 643 QPRQNLLNAATRVGEASHHVLTEIGES-QTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCAL 720 (2347)
Q Consensus 643 ~~rq~ll~AA~~l~~a~~~Ll~~i~e~-~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~-~~~q~~li~aA~~~a~ 720 (2347)
++||.|+++++++|++++.++.+||++ .+.+|++.|+++||+|++||+.||+++|++...++ |..|++||.+|++||.
T Consensus 151 e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~~~e~Li~aAKAVA~ATa~LV~~Ak~Va~~~~d~e~Q~~lI~AA~~~A~ 230 (308)
T 1sj8_A 151 EPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCAL 230 (308)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHhHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 78899999999999999999999999999999877 9999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15599 721 ATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVT 797 (2347)
Q Consensus 721 ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~ 797 (2347)
+|+|||+|+|+++|+|++|.||+||..++|.|+.+++.||..++..+.|+....+|..+++.|+.+|++||+|++.+
T Consensus 231 sTsQLVA~sKV~Apti~s~~cQeqL~~A~k~V~~av~~Lv~~~~~a~~d~~~~~~l~~aa~~V~~aL~~Ll~~~~~~ 307 (308)
T 1sj8_A 231 STSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVKAH 307 (308)
T ss_dssp HHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999854
No 6
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1
Probab=100.00 E-value=1.7e-52 Score=463.52 Aligned_cols=199 Identities=27% Similarity=0.432 Sum_probs=185.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCccCcccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 2075 SNWMDPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDETLNFDEMILEAAKSIAAATSALVKAASASQRELID 2154 (2347)
Q Consensus 2075 ~~~~~~~~~~~~~e~El~~aa~aIe~a~~~l~~~~~~~~~~~~~~~l~v~e~Il~~a~~i~~a~~~Lv~aa~~~q~eiv~ 2154 (2347)
+..++|+||++++|+||+.++.+|++|+.||++|+++++.++++++|+|||+||++|+.||.||..||++|+.+|+|||+
T Consensus 6 ~~~~~~~d~~~~~e~El~~aa~aIe~Aa~kL~~l~~~~~~~~~~~~l~v~e~IL~aa~~i~~Ai~~LV~aA~~aQ~EiV~ 85 (206)
T 1r0d_A 6 SLDVRQEELGAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTSTSLQKEIVE 85 (206)
T ss_dssp --CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCchHHHHhhhhhhhhhHHHHHHhhcC
Q psy15599 2155 AGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVK 2234 (2347)
Q Consensus 2155 ~gr~~~~~~~~~~~~~fy~~~~~w~egLisaak~Va~a~~~l~~~a~~~~~g~~~~E~li~aa~~vaastaqLv~asrvk 2234 (2347)
+|||..++. +||+||+|||||||||||+|+++|+.||++||++|+|++++|+|||++|+|||||||||+|||||
T Consensus 86 ~Gr~~~s~~------~fy~kn~~WtEGLISAAkaVa~at~~LveaAd~vv~g~~~~E~LIvaa~eVAAsTAQLvaAsrVK 159 (206)
T 1r0d_A 86 SGRGAATQQ------EFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHTGKYEELIVCSHEIAASTAQLVAASKVK 159 (206)
T ss_dssp HHCTTSCHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCCCCc------cccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998852 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccccc
Q psy15599 2235 ADPESDATHRLQSAGNAVKRATDNLVRAAQQAIQQ-DEERSLVLNR 2279 (2347)
Q Consensus 2235 a~~~s~~~~~L~~a~~~V~~a~~~lv~~~~~~~~~-~~~~~~~~~~ 2279 (2347)
++++|+++.+|+.|||+|++||++||++||++... ++.+++||+.
T Consensus 160 a~~~S~~~~~L~~Ask~V~~A~~~lV~avk~~~~~~e~~~~~D~s~ 205 (206)
T 1r0d_A 160 ANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSG 205 (206)
T ss_dssp CCSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCccc
Confidence 99999999999999999999999999999998543 5557899974
No 7
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=100.00 E-value=4.1e-50 Score=435.45 Aligned_cols=191 Identities=77% Similarity=1.025 Sum_probs=177.0
Q ss_pred CCchhHHHHHHHhhhhhhhcHHHHHHHHhcCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHH
Q psy15599 1751 SRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQN 1830 (2347)
Q Consensus 1751 ~~G~qac~~a~~~vsgii~dLd~ti~fA~ag~l~~~~~~~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~aa~~ 1830 (2347)
+|||||||+|+++|+|||+||||+||||+||+|+++. .++|.+||+.|++++|+|||++|.||++++++||+||.++++
T Consensus 2 srgtqAC~~A~s~V~~ii~DLDTt~lFA~AGtL~~~~-~~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a~~tQe~LA~aa~~ 80 (199)
T 3fyq_A 2 SRGTQACINAAHTVSGIIGDLDTTIMFATAGTLHSDG-DGSFADHREHILQTAKALVEDTKVLVTGAAGTQDQLANAAQN 80 (199)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHhHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999997 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy15599 1831 AVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLK 1910 (2347)
Q Consensus 1831 ~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~a~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~ 1910 (2347)
++++|.+|++++|.||++++|+||++||+|||++|||+.+|++||.+||.++|+|.+||+|.+||+++++|++||++||+
T Consensus 81 ~v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdVa~aL~~Li~atK~a~g~~~~d~~~~~Lk~sak~~~~nV~sLl~ 160 (199)
T 3fyq_A 81 AVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVASALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLLK 160 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccchhHHHHHHHHHHHHHHhcCC
Q psy15599 1911 TVKAVEDEHTRGTRALESTIEAIAQEIRALNS 1942 (2347)
Q Consensus 1911 tv~~v~~e~~rgt~ale~~~~~I~~~~~~lds 1942 (2347)
||++|+||++||||+||+++++|++|+..|+-
T Consensus 161 tV~~v~de~~rG~raLe~~i~~I~~el~~~~~ 192 (199)
T 3fyq_A 161 TVKAVEDEHTRGTRAMEATVEAISQEIRALEH 192 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998753
No 8
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-49 Score=436.51 Aligned_cols=184 Identities=71% Similarity=0.933 Sum_probs=179.4
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHHHHhccCCccCcccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15599 2078 MDP-DDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDETLNFDEMILEAAKSIAAATSALVKAASASQRELIDAG 2156 (2347)
Q Consensus 2078 ~~~-~~~~~~~e~El~~aa~aIe~a~~~l~~~~~~~~~~~~~~~l~v~e~Il~~a~~i~~a~~~Lv~aa~~~q~eiv~~g 2156 (2347)
++| +||++++|+||++++.+|++|+.||++|+++++.++.+++|+|||.||++|+.||.||..||++|+.+|+|||++|
T Consensus 2 ~~p~~d~~~~~E~EL~~aa~aIe~A~~~l~~l~~~~~~~~~~~~l~v~e~IL~aa~~i~~Ai~~Lv~aA~~aQ~Eiv~~G 81 (189)
T 2jsw_A 2 IDPFTDPTVIAENELLGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQG 81 (189)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCSSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCchHHHHhhhhhhhhhHHHHHHhhcCCC
Q psy15599 2157 RMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKAD 2236 (2347)
Q Consensus 2157 r~~~~~~~~~~~~~fy~~~~~w~egLisaak~Va~a~~~l~~~a~~~~~g~~~~E~li~aa~~vaastaqLv~asrvka~ 2236 (2347)
||+.++ +||+||+|||||||||||+|+++|+.||++||++|+|++++|+|||++++||+||||||+|||||++
T Consensus 82 r~~~~~-------~fy~~n~~WtEGLiSAAKaVa~at~~LveaAd~vv~g~~~~E~LIvaa~eVAAsTaQLvaAsrVKa~ 154 (189)
T 2jsw_A 82 KVGAIP-------ANALDDGQWSQGLISAARMVAAATNNLCEAANAAVQGHASQEKLISSAKQVAASTAQLLVACKVKAD 154 (189)
T ss_dssp CSCCSG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCc-------cccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 998875 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 2237 PESDATHRLQSAGNAVKRATDNLVRAAQQAIQ 2268 (2347)
Q Consensus 2237 ~~s~~~~~L~~a~~~V~~a~~~lv~~~~~~~~ 2268 (2347)
++|+++++|+.|||+|++||++||++++++++
T Consensus 155 ~~S~~q~~L~~Ask~V~~a~~~LV~~v~~a~~ 186 (189)
T 2jsw_A 155 QDSEAMKRLQAAGNAVKRASDNLVKAAQKAAA 186 (189)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998754
No 9
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=100.00 E-value=9e-43 Score=429.59 Aligned_cols=283 Identities=22% Similarity=0.392 Sum_probs=254.9
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHH
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKM 164 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~ 164 (2347)
++...|+|+|||| .+.+.|++++|++|+++.||.+|||.+.++|||++. .+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~--------------------------- 70 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IK--------------------------- 70 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ET---------------------------
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eC---------------------------
Confidence 4566799999999 677999999999999999999999999999999987 21
Q ss_pred HHHHhhhccCccccccccchhhhhcCC--CCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHH
Q psy15599 165 EQLRKKLKTDDEVNWIDFSKTLREQGI--DENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLAC 242 (2347)
Q Consensus 165 ~~Lk~~l~~~~~~~WLd~~ktL~eQgv--~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai 242 (2347)
+...||++.+++.+|+. ..+++|+||+|||+.++.....|+++++|+|.|+++||++|++||++++++
T Consensus 71 ----------~~~~wL~~~~~i~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~ 140 (314)
T 1h4r_A 71 ----------DTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASV 140 (314)
T ss_dssp ----------TEEEECCTTSBGGGSSCCCSSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred ----------CcCeeCCCccCHHHcCCCCCCCEEEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 12489999999999874 357899999999988765234789999999999999999999999999999
Q ss_pred HHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhh-----hhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCc
Q psy15599 243 QLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKV-----KGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGV 317 (2347)
Q Consensus 243 ~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~-----k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~ 317 (2347)
+||||++|+++|||++..|.++|+.+.+|+|+++++. +.|+++|.+.|++++|+++.+|+.+||++|++||+||+
T Consensus 141 ~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~ 220 (314)
T 1h4r_A 141 LLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGV 220 (314)
T ss_dssp HHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCc
Confidence 9999999999999999999999999999999998863 57999999999999999999999999999999999999
Q ss_pred EEEEEEEccCCCCcceeEEEEecCCceEEEeCCccc-eeeeeeccccceeeeeCceEEEEeCCCcCcEEEEech---HHH
Q psy15599 318 TFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKE-IMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTT---EAE 393 (2347)
Q Consensus 318 t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tke-vl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~---q~k 393 (2347)
+||.|+++ +| .+++|||+++||.+++++++. ++..|+|++|.+|.++++.|+|.+++.....|.|.|. .++
T Consensus 221 ~~f~v~~~-~g----~~~~LgI~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~~~k 295 (314)
T 1h4r_A 221 NYFAIRNK-KG----TELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNK 295 (314)
T ss_dssp EEEEEEET-TC----CEEEEEECSSEEEEECTTCSSSCSEEEEGGGEEEEEEETTEEEEEESSTTSCCEEEECCCHHHHH
T ss_pred eEEEeecC-CC----CEEEEEEeCCceEEEeCCCCcccceEEecccceEEEeeCCEEEEEEcCCCCceEEEEcCCHHHHH
Confidence 99999975 33 589999999999999999986 6789999999999999999999998765446778775 489
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy15599 394 QIQQLIAGYIDIILKKKM 411 (2347)
Q Consensus 394 ~I~~LI~gYi~l~lk~rr 411 (2347)
.|+.||.+||.+++++|+
T Consensus 296 ~i~~l~~~~h~f~~~~r~ 313 (314)
T 1h4r_A 296 LILQLCIGNHDLFMRRRK 313 (314)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999998875
No 10
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=100.00 E-value=1.3e-42 Score=424.60 Aligned_cols=281 Identities=20% Similarity=0.347 Sum_probs=252.8
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHHHH
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQL 167 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~L 167 (2347)
..|+|+|||| ..++.|++++|++|+++.||++|||.+.++||||+...+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~------------------------------ 50 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTK------------------------------ 50 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTT------------------------------
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCC------------------------------
Confidence 4789999999 567999999999999999999999999999999998542
Q ss_pred HhhhccCccccccccchhhhhcCC--CCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHH
Q psy15599 168 RKKLKTDDEVNWIDFSKTLREQGI--DENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLA 245 (2347)
Q Consensus 168 k~~l~~~~~~~WLd~~ktL~eQgv--~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LA 245 (2347)
+...||++.+++.+|++ ..+++|+||+|||+.++.....|+++++|+|.|+++||++|++||+.+++++||
T Consensus 51 -------~~~~wLd~~~~l~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~La 123 (294)
T 1ef1_A 51 -------GFSTWLKLNKKVTAQDVRKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLA 123 (294)
T ss_dssp -------SCEEECCSSSBGGGSCBCCCSSEEEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred -------CceeecccccCHHhhccCCCCCEEEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 12489999999999853 357899999999988765224789999999999999999999999999999999
Q ss_pred hHHHhhhcCCCCCCCCCCCccccccccchhhhhh-----hhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEE
Q psy15599 246 GIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKV-----KGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFF 320 (2347)
Q Consensus 246 ALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~-----k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F 320 (2347)
||++|+++|||++..|.++|+...+|+|+++++. +.|+++|.+.|++++|+++.+|+.+||++|++||+||++||
T Consensus 124 al~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~~~~~lp~yG~~~f 203 (294)
T 1ef1_A 124 SYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYF 203 (294)
T ss_dssp HHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSTTTTCEEE
T ss_pred HHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHcccCccCceEE
Confidence 9999999999999999999999999999998763 47999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCcceeEEEEecCCceEEEeCCcc-ceeeeeeccccceeeeeCceEEEEeCCCcCcEEEEechH---HHHHH
Q psy15599 321 LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTK-EIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTE---AEQIQ 396 (2347)
Q Consensus 321 ~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tk-evl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~q---~k~I~ 396 (2347)
.|+.+ +| .+++|||++.||.+++++++ .++..|+|++|.+|.++++.|+|.+++.....|.|.|.+ ++.|+
T Consensus 204 ~v~~~-~g----~~~~Lgv~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~~~k~l~ 278 (294)
T 1ef1_A 204 SIKNK-KG----SELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRIL 278 (294)
T ss_dssp EEECT-TC----CEEEEEEETTEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEESSSSSCCEEEECSSHHHHHHHH
T ss_pred eeecC-CC----CEEEEEEecCcEEEEeCCCccccceEEEcccceEeeecCCEEEEEEccCccceEEEEeCCHHHHHHHH
Confidence 99864 33 58999999999999999998 577899999999999999999999987544467777654 89999
Q ss_pred HHHHHHHHHHHhhhc
Q psy15599 397 QLIAGYIDIILKKKM 411 (2347)
Q Consensus 397 ~LI~gYi~l~lk~rr 411 (2347)
.||.+||.+++++|+
T Consensus 279 ~l~~~~h~f~~~~r~ 293 (294)
T 1ef1_A 279 ALCMGNHELYMRRRK 293 (294)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998875
No 11
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=1.8e-42 Score=452.65 Aligned_cols=284 Identities=21% Similarity=0.347 Sum_probs=254.1
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHH
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKM 164 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~ 164 (2347)
++...|+|+|||| .+.|.|++++|+.+|+..||.+|||.+.+|||||+.+.+
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~--------------------------- 53 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSK--------------------------- 53 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTT---------------------------
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecC---------------------------
Confidence 5678899999999 567999999999999999999999999999999998542
Q ss_pred HHHHhhhccCccccccccchhhhhcCC--CCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHH
Q psy15599 165 EQLRKKLKTDDEVNWIDFSKTLREQGI--DENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLAC 242 (2347)
Q Consensus 165 ~~Lk~~l~~~~~~~WLd~~ktL~eQgv--~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai 242 (2347)
+...||++.+++.+|++ ..+|.|+||+|||++++.....|+++++|||.|+++||+.|+|||+.++++
T Consensus 54 ----------~~~~WLd~~k~i~~q~~~~~~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c~~e~a~ 123 (575)
T 2i1j_A 54 ----------GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSV 123 (575)
T ss_dssp ----------SCEEECCTTSBGGGSCBCCCSSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred ----------cchhHhhccccHHHhcccCCCCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 12489999999999864 357899999999988765234789999999999999999999999999999
Q ss_pred HHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhh-----hhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCc
Q psy15599 243 QLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKV-----KGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGV 317 (2347)
Q Consensus 243 ~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~-----k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~ 317 (2347)
+||||++|++||||++..|.++|+....|+|+++++. ..|.++|...|+++.|+++.+|+..||++|++||+||+
T Consensus 124 ~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL~~a~~lp~YG~ 203 (575)
T 2i1j_A 124 LLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGV 203 (575)
T ss_dssp HHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhccccCC
Confidence 9999999999999999999999999999999998863 47999999999999999999999999999999999999
Q ss_pred EEEEEEEccCCCCcceeEEEEecCCceEEEeCCcc-ceeeeeeccccceeeeeCceEEEEeCCCcCcEEEEechH---HH
Q psy15599 318 TFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTK-EIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTE---AE 393 (2347)
Q Consensus 318 t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tk-evl~~~~~~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~q---~k 393 (2347)
+||.|+++ .| .++||||++.||++|+++++ .++.+|||++|.+|.++++.|+|.+++.....|.|.|++ ++
T Consensus 204 ~~F~vkd~-~g----~~l~LGV~~~GI~v~~~~~k~~~l~~f~w~~I~~isf~~k~F~I~~~~~~~~~l~F~t~~~~~ak 278 (575)
T 2i1j_A 204 NYFEIRNK-KN----TELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNK 278 (575)
T ss_dssp EEEEEECT-TC----CEEEEEECSSEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEESCTTSCCEEEECSCHHHHH
T ss_pred EEEEEEec-CC----CEEEEEEcCCeeEEEeCCCCcccceEecHHHhhcccCCCCeEEEEEccCCcceeEEEeCCchhHH
Confidence 99999864 33 58999999999999999988 567899999999999999999999987544457777654 89
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy15599 394 QIQQLIAGYIDIILKKKM 411 (2347)
Q Consensus 394 ~I~~LI~gYi~l~lk~rr 411 (2347)
.|+.||.+||.+|+++|+
T Consensus 279 ~i~~lc~~~H~ff~~~r~ 296 (575)
T 2i1j_A 279 RILALCMGNHELYMRRRK 296 (575)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 999999999999997754
No 12
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=100.00 E-value=8.3e-39 Score=445.79 Aligned_cols=958 Identities=13% Similarity=0.133 Sum_probs=650.4
Q ss_pred hHHHHHHHHHHHhhccc-cch-hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15599 653 TRVGEASHHVLTEIGES-QTN-EMQDTLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCALATSQLVACT 729 (2347)
Q Consensus 653 ~~l~~a~~~Ll~~i~e~-~~~-e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~-~~~q~~li~aA~~~a~ats~Lv~~A 729 (2347)
.-|....+.|.....+. .+. .+++ |..++++|+.|+..||..++..+..++ +.+|+.++.+++.|..++++|+.|+
T Consensus 14 ~p~~~qvt~Lv~~~e~~~~~~~~~~~-l~~~~~aV~~A~~~LV~~g~~~A~~~~D~~lk~~m~~A~~~v~~a~s~L~~aa 92 (1066)
T 1tr2_A 14 EPVAQQISHLVIMHEEGEVDGKAIPD-LTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAA 92 (1066)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCCC-CTTHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666443333 122 3444 888999999999999999999988766 8899999999999999999999999
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchHHHH
Q psy15599 730 KVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAV 809 (2347)
Q Consensus 730 k~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~~~~~ 809 (2347)
+++++.+.+|.|+++|+.+++.|..+|+.|+..|+... ..+|..+++.|.+.|+.
T Consensus 93 k~l~~dp~s~~~r~~Li~aAR~vl~sv~~LL~~~D~a~-----v~kl~~a~~~v~~~L~~-------------------- 147 (1066)
T 1tr2_A 93 QMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAE-----VRKIIRVCKGILEYLTV-------------------- 147 (1066)
T ss_dssp HHHHHCTTCTTTTTTTHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH--------------------
T ss_pred HHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHH--------------------
Confidence 99999999999999999999999999999998887664 35666666666666652
Q ss_pred HHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15599 810 EVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQ 889 (2347)
Q Consensus 810 ~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~ 889 (2347)
+...++.++|++++|.++.++..|+..++...+..+|+.++++|+.+++.|++.++.|+.++|.|..+|+
T Consensus 148 ----------~~~~~~~~elv~~~k~l~~~m~~l~~~~~~r~~~l~d~~~r~~L~~A~~~L~~~~~~L~~a~k~~~~~~~ 217 (1066)
T 1tr2_A 148 ----------AEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKN 217 (1066)
T ss_dssp ----------GGGCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 2334788999999999999999999999988888889999999999999999999999999999998554
Q ss_pred CHHHHHHHHHHHHHHHhhcchHHHHHhhhhccccccccCCcchHHHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHH
Q psy15599 890 DIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELS 969 (2347)
Q Consensus 890 d~~~q~~L~~AAe~L~~At~~~i~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~a~~~l~~~~~p~~~~~~~~~q~~L~ 969 (2347)
+. +..+.+|++++...+ ..+..+++.|..+......+. ..... ....
T Consensus 218 ~~--~~~~~~A~~~r~~~~------------------------~~~~~a~~~Ii~a~q~~~~~~-----~~~~~--~~~~ 264 (1066)
T 1tr2_A 218 SK--NQGIEEALKNRNFTV------------------------EKMSAEINEIIRVLQLTSWDE-----DAWAS--KDTE 264 (1066)
T ss_dssp HT--SSSHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTCCSSCS-----SSHHH--HHHH
T ss_pred CC--CcccHHHHHhhhHHH------------------------HHHHHHHHHHHHHHhcCCCCc-----cccch--hhHH
Confidence 33 344666666665552 222444555544433111111 11110 1111
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy15599 970 SAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRE--TQTKMLSSLKSVSTSSSKFLSTARSA 1047 (2347)
Q Consensus 970 ~aA~~L~~a~~~lv~~~~~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~--~q~~li~~~~~i~~~s~kLl~~aKa~ 1047 (2347)
.|..+++.|.+.++++++..+.-...+.+.. ++.++|..++.|.. +
T Consensus 265 ---------------------~l~~~~~~~~~~~~~a~~~~~~p~a~p~~~~~~a~r~~i~~a~~~a~----------~- 312 (1066)
T 1tr2_A 265 ---------------------AMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQILDEAGKVGE----------L- 312 (1066)
T ss_dssp ---------------------HHHHHHHHHHTTHHHHHHHHSCSSCCTTSHHHHHHHHHHHHHHHHHT----------T-
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHhcCCccCCcchhHHHHHHHHHHHHHHHH----------h-
Confidence 1233334444444444433333233333333 45566666666542 2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHhhccccCCCCCCCCcccHHHHHHHHHHhhhh
Q psy15599 1048 ALDPSASNSKSQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKS 1127 (2347)
Q Consensus 1048 ~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a~~~aapg~~E~D~Al~~I~~l~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~ 1127 (2347)
..|.|+....+|...+..++++|.+|+.......| .|....+.+...|..+ .|.-..+. .|.+.++..+|
T Consensus 313 -~~p~~~~~~~~l~~~l~~~~~~L~~Lr~~g~G~~~------~a~~~~~~i~~~l~~~-~~~~~~~~-~~~e~~~~~~~- 382 (1066)
T 1tr2_A 313 -CAGKERREILGTCKMLGQMTDQVADLRARGQGSSP------VAMQKAQQVSQGLDVL-TAKVENAA-RKLEAMTNSKQ- 382 (1066)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSH------HHHHSHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHH-
T ss_pred -cCcccHHHHHHHHHHHHHHHHHHHHHHHhccCCCh------HHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHhcccch-
Confidence 24678888888999999999999999876653322 4555555555555433 33333333 67788888888
Q ss_pred HHHHHHHHHHHhhcc--CcchhhhhhhhhHHhhhhhhhhHhhhhhhhhhccccccccccCCcchHHHHHHHHHHHHHHhh
Q psy15599 1128 LGEGMTGMANHAKHS--EYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNT 1205 (2347)
Q Consensus 1128 lg~amaql~~~a~~~--~~~~~g~s~~~~a~al~~L~eaaa~aa~~vavsd~~s~~~~~~liD~~~~~ra~~~I~~a~~~ 1205 (2347)
+|+|++..|+++ |+.+.|. .+.+++.|+.+....+ +.. ++++
T Consensus 383 ---~~aqli~aA~~~~~~P~~~~~----~a~alk~l~~~~r~~a---~~~-----~~~~--------------------- 426 (1066)
T 1tr2_A 383 ---SIAKKIDAAQNWLADPNGGPE----GEEQIRGALAEARKIA---ELC-----DDPK--------------------- 426 (1066)
T ss_dssp ---HHHHHHHHHHHTTTCSSCCHH----HHHHHHHHHHHHHHHH---HTC-----SCHH---------------------
T ss_pred ---hHHHHHHHHHhhccCCCcchH----HHHHHHHHHHHHHHhc---ccc-----CCch---------------------
Confidence 899999999998 4456552 6667777764333222 000 0100
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhhhcCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhh--hccCchhhhHh
Q psy15599 1206 LTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALD--MNYNEKNHQVC 1283 (2347)
Q Consensus 1206 l~~~~~~~~q~l~~a~~ia~~t~~l~~~c~~as~~~~n~~~~~~~~~~ak~v~~at~~Lv~~ik~~~--~~~~~~~~~~~ 1283 (2347)
.+..+|..+..|-..+..|...++.... .+|.. ....++|.++..+|.+.+..+- ..+.....
T Consensus 427 ------~~~~il~~~~~i~~~s~~l~~~~~~~~~--~~~~~----~~~~~~v~~al~~l~~~ld~ai~~~~~~~~~~--- 491 (1066)
T 1tr2_A 427 ------ERDDILRSLGEISALTSKLADLRRQGKG--DSPEA----RALAKQVATALQNLQTKTNRAVANSRPAKAAV--- 491 (1066)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHTTTSCCC--TTTTS----HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCS---
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHhhccC--CChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---
Confidence 2344555666666666666665542211 13322 2266777777777776664332 11100000
Q ss_pred hhhcchHHHHHhhhhhc---------cCchhhhhcccccCc--hhhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCC
Q psy15599 1284 TQATKPLLDAVDSLVSF---------AYSPEFVNRSSHFGD--STLTAQEPILSAGEAIIESSCSMI-KTAKSLAVSPKD 1351 (2347)
Q Consensus 1284 ~~~~~~L~~a~~~l~~~---------as~~efa~~~~~is~--~~~~~q~~iv~~~k~i~~ss~~ll-~tAk~la~~P~d 1351 (2347)
.....+.++...|..- ..+.+|.+...++.. .+. .|..+++.+++|.+.+.+|+ .++|.++.||++
T Consensus 492 -~~~~~~~qa~~~l~~p~~~~~~~~~~a~~~l~~~~~~la~~~~~~-~r~~~l~~~k~v~~~s~qLl~~a~~~~~~~P~a 569 (1066)
T 1tr2_A 492 -HLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGP-YRQDLLAKCDRVDQLTAQLADLAARGEGESPQA 569 (1066)
T ss_dssp -SHHHHHHHHHHHHHCTTSCCCSHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSHH
T ss_pred -cccchHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Confidence 0011222222222110 011111111111111 112 48899999999999999999 788888999999
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-chhhhhhHHHHHH
Q psy15599 1352 RPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYN-SASLQMSAEKTEQ 1430 (2347)
Q Consensus 1352 p~~~q~La~aaraVsdsI~~Lv~a~~~~aPGQkECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~~~~-~~s~~~~~e~~~~ 1430 (2347)
|+++++|..+.|.|.++|++++. +.|.. .|.+ +..+++|.|...
T Consensus 570 ~~~~~~L~~a~~~L~~~i~~~a~----------------~~i~d------------------~f~d~~~~l~~L~eaa~- 614 (1066)
T 1tr2_A 570 RALASQLQDSLKDLKARMQEAMT----------------QEVSD------------------VFSDTTTPIKLLAVAAT- 614 (1066)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHH----------------HHHHH------------------HTTCCSHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHhh------------------hHhhhhhHHHHHHHHHh-
Confidence 99999999999999999999933 33311 1122 122333322222
Q ss_pred HHHHHHhhhhHHHHHHHhhHHHHhhhHHHHhhhhchhhhhHHHhhhccc-ChhhhhHHHHhhhHHHHHHHHHHHHHHhhC
Q psy15599 1431 AANEILTRLEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLI-HSKQQMTLLDQTKTVAECLLQVLHLIKEAG 1509 (2347)
Q Consensus 1431 ~~~~l~~~i~~l~~A~~~~~e~l~~~v~~~~~~~~~l~~~a~~aas~~~-~~~~q~~~~~~sK~v~es~~~L~~~aK~~~ 1509 (2347)
+|. ...+.+++++..+..+..+...|+..|+.+++... |+..+..+...++.|+..+.+|+.++|.+-
T Consensus 615 ---------~~~--~~~~~~~~~~~~a~~~~~~~~~L~~~a~~~~~~~~~~~~~~~~i~~aa~~l~~~t~~lv~aar~~~ 683 (1066)
T 1tr2_A 615 ---------APP--DAPNREEVFDERAANFENHSGKLGATAEKAAAVGTANKSTVEGIQASVKTARELTPQVVSAARILL 683 (1066)
T ss_dssp ---------SCT--TCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---------ccc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111 11355668888888888889999999999999999 888899999999999999999999999999
Q ss_pred CCCCCCccccchHHHHHHHHHHHHHHHhhhhhhcccccccccccccccccCCCCCCCCCcccccccccchhcccccCCCC
Q psy15599 1510 GNPDAVNIHPDLDESIEATKEALSDITSSLDHFTGVVNTFVDSITKSMQQIPDPNQPNSHYASDSVDSYVDYHTRMVGSS 1589 (2347)
Q Consensus 1510 gnp~~~~~~~~~~~a~~~~~eav~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 1589 (2347)
.+|+++...+.|....+...+++.+|...+.++. ++
T Consensus 684 ~~p~n~~Ak~~l~~~~~~~~~~v~~L~~~V~~i~------------------dl-------------------------- 719 (1066)
T 1tr2_A 684 RNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAI------------------DT-------------------------- 719 (1066)
T ss_dssp SSCSCTHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------CH--------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------------CH--------------------------
Confidence 9999888888899999999999998876654322 00
Q ss_pred CcccccchhhhHHHHHHHHhhcCCCCCCCCCccccccccchhHh-HHHHHHHHHHHHHHhHHhhhhcccCchhhhhhHHH
Q psy15599 1590 SLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDY-HTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQ 1668 (2347)
Q Consensus 1590 ~~~~~~g~~~~~~d~I~~~~~~l~~~~~~~~~~~~~~~~s~~~~-qt~m~~~ak~ia~~~~~~~~~a~~~~~~l~~~~~~ 1668 (2347)
..|.+- ...|....+... . ....+++.+|...+..
T Consensus 720 --------------------------------------~~f~aas~~~i~ed~~~~~---~---a~~~~~~~~l~~~a~~ 755 (1066)
T 1tr2_A 720 --------------------------------------KSLLDASEEAIKKDLDKCK---V---AMANIQPQMLVAGATS 755 (1066)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHH---H---HHHHTCHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHH---H---HHhccChHHHHHHHHH
Confidence 011111 112222222221 1 2223456677777777
Q ss_pred HHHHHhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1669 LTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACINTVTMAATCQTS-GDDYTHREFADTNRVLAEKVSQVLYAL 1747 (2347)
Q Consensus 1669 ~s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~~~~-~d~~t~~~l~~~ar~v~e~v~~l~aal 1747 (2347)
+......|+..++.-+.+++||+.+..|++.++.|..+...|+.+++...++ .|+..|+.|.+++|.|.++|.+|+.++
T Consensus 756 i~~~~~~l~~vv~~~~~~s~~p~~q~~v~~a~k~l~~s~~~li~~aK~~a~~p~d~~~~~~l~~~~k~v~~~V~~l~~av 835 (1066)
T 1tr2_A 756 IARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAF 835 (1066)
T ss_dssp HHHHHHHHHHHHHHHHHTBCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCChHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999999888888 799999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHhhhhhh-hcHHHH-------HHHHhcCCCcc-ccCCchh--------------------------
Q psy15599 1748 QAGSRGTQACINAASTVSGII-GDLDTT-------IMFATAGTLHA-EKENDTF-------------------------- 1792 (2347)
Q Consensus 1748 ~~g~~G~qac~~a~~~vsgii-~dLd~t-------i~fA~ag~l~~-~~~~~~f-------------------------- 1792 (2347)
+...|...- ....+..|- ++-... -+.. -..+++ +.+.+.|
T Consensus 836 ~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~e~~e~~~~~~~~~~~~~~i~~~~~~l~~e~~k 911 (1066)
T 1tr2_A 836 QPQEPDFPP---PPPDLEQLRLTDELAPPKPPLPEGEVP-PPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARK 911 (1066)
T ss_dssp SCCCCCCCC---C----------------------------------CCCCCCCCCCCSSCSCCHHHHHHHHHHHHHHTT
T ss_pred hccCCccCC---CCccHHHHhhcccCCCCCCCCcccccC-CCCCCCChhhhhhccchhcccccchhHHHHHHHHHHHHhc
Confidence 876663320 001111111 000000 0000 011111 2111122
Q ss_pred -hHHHHHHHHHHHHHHHHH---HHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHH
Q psy15599 1793 -ADHRENILKTAKALVEDT---KTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVT 1868 (2347)
Q Consensus 1793 -~d~~~~i~~~ak~lv~~~---~~lv~~~~~~qe~La~aa~~~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~ 1868 (2347)
.+.-++|++.||.+..-+ ..++.|.+.+.++|=.+|+.++.....|...+|.-|..+. |+.....|+..+..+.
T Consensus 912 W~~~~ndiI~~AK~ma~~m~~m~~~~~g~~~~~~d~i~~Ak~ia~~~~~l~~~~r~~a~~~~--d~~~k~~ll~~~~~i~ 989 (1066)
T 1tr2_A 912 WSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCT--DKRIRTNLLQVCERIP 989 (1066)
T ss_dssp BCCTTCHHHHHHHHHHHHHHTHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBC--BHHHHHHHHHHHTHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 122347999999999998 8888888899999999999999999999999998888764 9999999999999999
Q ss_pred HHH--HHHHHHHhhcC---CCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1869 TAL--GDLIQATKAAS---GKTIN---DPCMNHLKESAKVMVTNVTSLLKTVKA 1914 (2347)
Q Consensus 1869 ~a~--~~li~atk~a~---g~p~~---~~~~~~L~~~a~~~~~~v~~ll~tv~~ 1914 (2347)
.-| ..++.+-|+.. ++|.. +.++..|..+||.+..+|..+.++...
T Consensus 990 ~~~~QL~ils~VKa~~~g~~~~~~~~~~~a~~~Li~~aknLm~aV~~~V~aa~~ 1043 (1066)
T 1tr2_A 990 TISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEA 1043 (1066)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 66677777776 67654 346888999999999999999888776
No 13
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=100.00 E-value=5e-41 Score=409.34 Aligned_cols=275 Identities=18% Similarity=0.314 Sum_probs=241.9
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHH
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLK 163 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k 163 (2347)
.++.+.|+|+||||+.+++.||+++|+.|+++.||.+|||.+.++|||++.+.+
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~-------------------------- 67 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNA-------------------------- 67 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEET--------------------------
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCC--------------------------
Confidence 456789999999999999999999999999999999999999999999988542
Q ss_pred HHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHH
Q psy15599 164 MEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQ 243 (2347)
Q Consensus 164 ~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~ 243 (2347)
++..||++.+++.+|..+.+++|+||+|||+.++.. ..|+++++|+|.|++++|+.|++||+.+++++
T Consensus 68 -----------~~~~wLd~~k~i~~q~~~~~~~l~frvkfy~~~~~~-l~~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~ 135 (296)
T 3qij_A 68 -----------TSKTWLDSAKEIKKQVRGVPWNFTFNVKFYPPDPAQ-LTEDITRYYLCLQLRQDIVAGRLPCSFATLAL 135 (296)
T ss_dssp -----------TEEEECCTTSBHHHHC---CCEEEEEESSCCSCGGG-SSCHHHHHHHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred -----------CccchhccchhHHHhcCCCCcEEEEEEEEeCCCchh-ccCHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 124899999999999877789999999999988774 58999999999999999999999999999999
Q ss_pred HHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEEE
Q psy15599 244 LAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVK 323 (2347)
Q Consensus 244 LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~Vk 323 (2347)
||||++|+++|||++..+.++|+....|+|.. .++|+++|.+.|++++|+|+.+|+.+||++|++||+||++||.|+
T Consensus 136 LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~---~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk 212 (296)
T 3qij_A 136 LGSYTIQSELGDYDPELHGVDYVSDFKLAPNQ---TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAK 212 (296)
T ss_dssp HHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSC---CHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEE
T ss_pred HHHHHHHHhcCCCCccccchhhCcHhhcCCcC---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEE
Confidence 99999999999999888888999889999986 468999999999999999999999999999999999999999998
Q ss_pred EccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc----Cc--EEEEech-HHHHHH
Q psy15599 324 EKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS----DN--YYSVQTT-EAEQIQ 396 (2347)
Q Consensus 324 ~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~----~~--~f~~~T~-q~k~I~ 396 (2347)
.+ . ..++||||++.||.+++++++ +..|||++|.+|.++++.|+|++.+.. .. .|.+.+. .|+.||
T Consensus 213 ~~-~----~~~~~LgV~~~Gi~v~~~~~k--l~~f~w~~I~~~s~~~k~F~i~~~~~~~~~~~~~~~f~~~~~~~~k~l~ 285 (296)
T 3qij_A 213 DL-E----GVDIILGVCSSGLLVYKDKLR--INRFPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLW 285 (296)
T ss_dssp CT-T----SCEEEEEECSSEEEEEETTEE--EEEEEGGGEEEEEEETTEEEEEEC-------CEEEEEECSSHHHHHHHH
T ss_pred cC-C----CCEEEEEECCCeEEEEeCCCe--EEEEEhhhcCEEEecCCEEEEEEecCccCCccceEEEECCCHHHHHHHH
Confidence 64 2 248999999999999999876 689999999999999999999986432 12 3555554 489999
Q ss_pred HHHHHHHHHH
Q psy15599 397 QLIAGYIDII 406 (2347)
Q Consensus 397 ~LI~gYi~l~ 406 (2347)
.+|.++|.++
T Consensus 286 ~~c~~~h~ff 295 (296)
T 3qij_A 286 KVCVEHHTFF 295 (296)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhcccc
Confidence 9999999875
No 14
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=100.00 E-value=3.2e-38 Score=417.18 Aligned_cols=348 Identities=20% Similarity=0.308 Sum_probs=272.5
Q ss_pred ecCCCcHHHHHHHHH----hhcCcccCCCccccccccccCCCc-cccccccCCc-hhhhhccCCccccccccceeEEEEe
Q psy15599 21 FDPSTSVYDACRIIR----DKISEANFGEAKDYGLFLSDGDVK-KGVWLEPGRN-LEYYILRNGDELEYRRKMRTLKVRM 94 (2347)
Q Consensus 21 f~~~~~v~~~~~~i~----e~~~~~~~~~~~dyglf~~~~~~~-k~~WL~~~~t-L~~y~l~~~~~L~~~~~~r~lkV~L 94 (2347)
|-|+..+...+.... +..+.. +..+||.|..+...+ .+||..|++. +... ..++...++|+|
T Consensus 156 f~Ps~~~~~~l~~~l~~~~~~~~~~---~~~~~a~~c~~~L~rtg~R~~~Ps~~Ei~a~---------~~~~~~~~~V~l 223 (555)
T 3au4_A 156 FLPSRGILKYLKFHLKRIREQFPGT---EMEKYALFTYESLKKTKCREFVPSRDEIEAL---------IHRQEMTSTVYC 223 (555)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHTTCCCCSSCCCHHHHHHH---------HTTCCEEEEEEE
T ss_pred cCCcHHHHHHHHHHHHhhhhccCCc---cHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH---------HhCCCcceEEEe
Confidence 778777666654322 222322 236799999776654 6888888542 2221 134567899999
Q ss_pred CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHHHHHhhhcc
Q psy15599 95 LDGTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQLRKKLKT 173 (2347)
Q Consensus 95 ~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~~Lk~~l~~ 173 (2347)
|||+.+++.|+.++|+.|+++.||++|||.+ .++||||+...+.+. +| .++.+.++-+.
T Consensus 224 ~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~---------~L------~~~~~i~D~~~----- 283 (555)
T 3au4_A 224 HGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDK---------AI------ESRTVVADVLA----- 283 (555)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEE---------EC------CTTSBHHHHHH-----
T ss_pred cCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeE---------ec------CCCCchhHHHH-----
Confidence 9999999999999999999999999999997 799999987543210 11 11112222111
Q ss_pred CccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhc
Q psy15599 174 DDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQF 253 (2347)
Q Consensus 174 ~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~ 253 (2347)
.|.+..++... ...+|+|+||++||+.+.. ...|+++++|+|.|+++||++|++||+++++++||||++|+++
T Consensus 284 ----~we~~~~~~~~--~~~~~~l~fR~~ff~~~~~-~~~d~~~~~lly~Q~~~dil~G~~~~~~e~a~~LAAl~lQ~~~ 356 (555)
T 3au4_A 284 ----KFEKLAATSEV--GDLPWKFYFKLYCFLDTDN-VPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQ 356 (555)
T ss_dssp ----HHHHHTTSCCT--TCCCCEEEEEEEECSCCTT-CCTTSHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHhhccCC--CCCceEEEEEEEeecCccc-CCcchHHHHhhHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHc
Confidence 34443332221 1348999999999864433 3578999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccccchhhhhh-----------------------------------hhHHHHHHHHHHhccCCCH
Q psy15599 254 GDYNPSKHKPPFLDLKEFLPQSYVKV-----------------------------------KGIEKKIFSEHKNHVGLSE 298 (2347)
Q Consensus 254 GD~~~~k~~~~~l~l~~~lP~~~lk~-----------------------------------k~~~~~I~~~hk~l~glS~ 298 (2347)
|||++..+. ..+++|+|+.+++. +.++++|.+.|++++|+++
T Consensus 357 GD~~~~~~~---~~l~~~lP~~~l~~~~~~~~k~~s~~~~~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~ 433 (555)
T 3au4_A 357 GDYTLHAAI---PPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQ 433 (555)
T ss_dssp CSCCTTCCC---CCGGGTSCCHHHHHHHHHTTCCEECCTTSCCEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred CCCccccch---hhhhhhCCHHHhhhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999875432 36789999976543 2348899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeee-eCceEEEEe
Q psy15599 299 LDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGA-SSNVFTLDF 377 (2347)
Q Consensus 299 ~eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~-~~~~f~I~~ 377 (2347)
.+|+.+||+++++||+||++||.|+.+ +++.+.+++|||+..||+++++++++++.+|||++|.+|.. ..+.|+|.+
T Consensus 434 ~eA~~~yL~~~~~lp~yG~~~F~v~~~--~~~~~~~l~LgV~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~~f~i~~ 511 (555)
T 3au4_A 434 EQAMAKYMALIKEWPGYGSTLFDVECK--EGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKIVV 511 (555)
T ss_dssp HHHHHHHHHHHTTSTTTTCEEEEEEEE--ESSSCSEEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCceEEEEEec--CCCCCceEEEEEcccceEEECCCCCeeEEEEEhhheeeecCCCCCEEEEEE
Confidence 999999999999999999999999875 23346789999999999999999999999999999999995 678999999
Q ss_pred CCCcCcEEEEechHHHHHHHHHHHHHHHHHhhhcccCC
Q psy15599 378 GDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMSKDH 415 (2347)
Q Consensus 378 ~d~~~~~f~~~T~q~k~I~~LI~gYi~l~lk~rr~kd~ 415 (2347)
++. .|.|+|+++.+|..||.+|++.++++|+++..
T Consensus 512 ~~~---~l~f~T~qa~~i~~LI~~Yi~~l~~~r~~~~~ 546 (555)
T 3au4_A 512 DER---ELLFETSEVVDVAKLMKAYISMIVKKRYSTTR 546 (555)
T ss_dssp TTE---EEEEECTTHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CCc---EEEEECCCHHHHHHHHHHHHHHHHHhhhccCC
Confidence 864 69999999999999999999999998877643
No 15
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1
Probab=100.00 E-value=1.6e-39 Score=347.53 Aligned_cols=168 Identities=45% Similarity=0.674 Sum_probs=156.6
Q ss_pred ccCCCCcccccchhhhhchhHHHHhhhhHhhHHHHHHHHHhhccccCCCCCCCCccchhHHHhhhhhhhhhHHHHHHHHH
Q psy15599 489 IAHSPTTTQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQIAAMN 568 (2347)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~q~al~~~i~~~~~~v~~a~~el~~~~~~~~~~~d~as~~w~~~~~~~~k~~v~~~~~a~~ 568 (2347)
+||+|| +.+|||||++||+.++++|+.+..||+.|.++|+||+|++|++||+|+||++||+|+++++||+
T Consensus 1 ~~~~~~----------~~~~q~Al~~tI~~~~~av~~a~~el~~~~~lP~lg~D~aS~~W~~~~ld~skq~V~s~vaAm~ 70 (174)
T 1sj7_A 1 RGHMPP----------LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQVDAIT 70 (174)
T ss_dssp ----------------CCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC----------cchHHHHHHHHhhhHHHHHHHHHHhhcccccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999 6779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCC--CccchhhhhhhhhcchhhHhhhhHHHHhcCCC----hHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15599 569 AATAQVVTMTSGEVT--DYSGVESAITSISHTLPEMSKGVRMLAALTPS----GDELLDAARKLCFAFTDLLKAAQPHSN 642 (2347)
Q Consensus 569 a~~a~~~~~~a~~~~--d~~~v~~~i~~i~s~~~~~~~~~k~la~l~~~----~~~L~~aar~La~a~s~ll~~~~p~~~ 642 (2347)
++||+|||+|+|+|+ ||++||++||||+|||+||+++||+|++||+| |++|++|+|.||++|+|||++++|++.
T Consensus 71 AaTA~vV~lT~~~~~~~d~taVG~AittI~SNl~em~k~vk~laAL~~de~~~g~~Ll~Aar~L~~A~s~lLk~~~p~~~ 150 (174)
T 1sj7_A 71 AGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASA 150 (174)
T ss_dssp HHHHHHHHHSCSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHhHhhhccCCCcccccccchhhHHHHHHhhhHHHHHHHHHHHhhccCCccccHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999998887 99999999999999999999999999999855 789999999999999999999999999
Q ss_pred hhHhHHHHHHhHHHHHHHHHHHhh
Q psy15599 643 QPRQNLLNAATRVGEASHHVLTEI 666 (2347)
Q Consensus 643 ~~rq~ll~AA~~l~~a~~~Ll~~i 666 (2347)
++||+||+||++||+++++||.+|
T Consensus 151 ~~rq~ll~AA~~Vg~as~~lL~~i 174 (174)
T 1sj7_A 151 EPRQNLLQAAGNVGQASGELLQQI 174 (174)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999764
No 16
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=100.00 E-value=8.5e-39 Score=394.88 Aligned_cols=295 Identities=20% Similarity=0.378 Sum_probs=240.8
Q ss_pred ccceeEEEEeCCCcEEEEEEcC--CCcHHHHHHHHHHHhCCCC--CCcceeEEecCCcccccCCCCcccchhchhhhhhh
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDD--SQPVANLMVVICTKIGITN--HDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKER 160 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~--sttv~evv~~Ic~~LGL~~--~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~ 160 (2347)
++.+.|+|+||||+.+.+.|+. ++|++|+ |++|||+. .++||||+..+..+. .| .++
T Consensus 3 ~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e~---------~L------~~~ 63 (322)
T 4dxa_B 3 PEFEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLSL---------QL------KPY 63 (322)
T ss_dssp --CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCEE---------EC------CTT
T ss_pred CCceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCcccc---------cc------Ccc
Confidence 5678999999999999999999 9999999 56789974 589999999774331 11 122
Q ss_pred hHHHHHHHhhhccCccccccccchhhhhcCC-CCCceEEEEEEeecC-CCCCCCCChhhHHHHHHHhHhhhccCCCcCCH
Q psy15599 161 DLKMEQLRKKLKTDDEVNWIDFSKTLREQGI-DENEPVLLRRKFFFS-DGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQ 238 (2347)
Q Consensus 161 ~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv-~e~~~L~LRrKff~~-d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~se 238 (2347)
+..++.+ ..|++..+.+..+.+ .+.++|+|||+||++ +......|+++++|+|.|++++|+.|++||+.
T Consensus 64 ~~~~d~~---------~~W~~~l~~~~~~~~~~~~p~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~ 134 (322)
T 4dxa_B 64 HKPLQHV---------RDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPD 134 (322)
T ss_dssp CCHHHHH---------HTHHHHHHHHCSCCCCCCCCEEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCH
T ss_pred ccHHHHH---------HHHHHHHHHhcCCCCCCCceEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCH
Confidence 2222221 267777776665532 346799999999975 44333579999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhcCCCCCCCCCCCccc---cccccchhhhhh--hhHHHHHHHHHHhc---cCCCHH--HHHHHHHHH
Q psy15599 239 DLACQLAGIQTHIQFGDYNPSKHKPPFLD---LKEFLPQSYVKV--KGIEKKIFSEHKNH---VGLSEL--DAKVLYTKT 308 (2347)
Q Consensus 239 e~ai~LAALqlQie~GD~~~~k~~~~~l~---l~~~lP~~~lk~--k~~~~~I~~~hk~l---~glS~~--eAk~~YL~~ 308 (2347)
+++++||||++|+++|||++..|.++|+. +++|+|+++++. ..|+++|.+.|+++ +|+++. +|+.+||++
T Consensus 135 e~a~~LAAl~~q~e~Gd~~~~~~~~~~l~~~~l~~~lP~~~~~~~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~ 214 (322)
T 4dxa_B 135 AKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQN 214 (322)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHSSSCSCHHHHTTTSCTTTTTTTGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccccchhhhhhhCCHHHHhcCHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHH
Confidence 99999999999999999998888888875 789999998864 36999999999999 999865 569999999
Q ss_pred hccCCCCCcEEEEEEEccC--C-CCcceeEEEEecCCceEEEeCCccceeeeeeccccceeee--eCceEEEEeCCCcCc
Q psy15599 309 CRSLPTYGVTFFLVKEKMK--G-KNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGA--SSNVFTLDFGDYSDN 383 (2347)
Q Consensus 309 ~rslp~YG~t~F~Vk~k~~--g-~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~--~~~~f~I~~~d~~~~ 383 (2347)
|++||+||++||.|+...+ | .+...++|||||.+||+++++++++++.+|||.+|. |.+ +.+.|+|.+++...
T Consensus 215 ~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~~~~tk~~l~~~~~~~is-w~~s~~~~~f~i~~~~~~~- 292 (322)
T 4dxa_B 215 CWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFM-WQLGDTDTCFQIHSMENKM- 292 (322)
T ss_dssp HHTSTTTTCEEEEEEEECC-------EEEEEEEECSSEEEEEETTTCCEEEEEETTSEE-EEECSSTTEEEEEESSSCC-
T ss_pred HhcCCCcCeEEEEEEEeccCCCCccCCCeEEEEEccCceEEEcCCCceeeeccccceeE-EeecCCCCEEEEEECCCCc-
Confidence 9999999999999996422 2 123568999999999999999999999999999996 995 45899999998643
Q ss_pred EEEEechHHHHHHHHHHHHHHHHHhh
Q psy15599 384 YYSVQTTEAEQIQQLIAGYIDIILKK 409 (2347)
Q Consensus 384 ~f~~~T~q~k~I~~LI~gYi~l~lk~ 409 (2347)
.|.|+|+++.+|..||.+|++.+.++
T Consensus 293 ~~~~~t~q~~~i~~li~~~~~~~~~~ 318 (322)
T 4dxa_B 293 SFIVHTKQAGLVVKLLMKLNGQLMPT 318 (322)
T ss_dssp EEEEECTTHHHHHHHHHHHHHTC---
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999755
No 17
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=100.00 E-value=5.9e-38 Score=351.33 Aligned_cols=197 Identities=38% Similarity=0.526 Sum_probs=167.3
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHhhhhHHHHHHHh
Q psy15599 1369 IKRLVTSIRDVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKY 1448 (2347)
Q Consensus 1369 I~~Lv~a~~~~aPGQkECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~~~~~~s~~~~~e~~~~~~~~l~~~i~~l~~A~~~ 1448 (2347)
.-.||++||++||||+|||+||++|+.+|++||+++|++++++|+++.+ +++++|+|+++..+++|++.++|+..|+++
T Consensus 13 ~~~lisaird~APGQ~eCd~AI~~in~~i~dLd~AsLaA~s~~L~~~~~-~s~~~~qeq~~~~~~eL~~~i~~l~~AAk~ 91 (216)
T 4f7g_B 13 LGTENLYFQSKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREG-ISQEALHTQMLTAVQEISHLIEPLASAARA 91 (216)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-ccHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Confidence 4679999999999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred hHHHHhhhHHHHhhhhchhhhhHHHhhhcccChhhhhHHHHhhhHHHHHHHHHHHHHHhhCCCCC-CCccccchHHHHHH
Q psy15599 1449 QAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQVLHLIKEAGGNPD-AVNIHPDLDESIEA 1527 (2347)
Q Consensus 1449 ~~e~l~~~v~~~~~~~~~l~~~a~~aas~~~~~~~q~~~~~~sK~v~es~~~L~~~aK~~~gnp~-~~~~~~~~~~a~~~ 1527 (2347)
++|++||+|+++++||+||++++++++|+|.|+++|+.||+++|+|+|++++||+++|+.||||+ +.|.|+.++++++.
T Consensus 92 ~~e~LG~av~~~a~~~epLv~aa~gaAS~t~ds~~Q~~lLdq~Ktv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa~~ 171 (216)
T 4f7g_B 92 EASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQM 171 (216)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccccCCCCCCCCCcccccccccchhcccccCCCCCcccccchhhhHHHHHHH
Q psy15599 1528 TKEALSDITSSLDHFTGVVNTFVDSITKSMQQIPDPNQPNSHYASDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSITK 1607 (2347)
Q Consensus 1528 ~~eav~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~d~I~~ 1607 (2347)
++|+|++|..++++++ ++.|+|.|++|+|++
T Consensus 172 l~eai~d~~~tl~~~a-------------------------------------------------se~G~v~g~vd~i~~ 202 (216)
T 4f7g_B 172 MTEAVEDLTTTLNEAA-------------------------------------------------SAAGVVGGMVDSITQ 202 (216)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------------------------------HHTTCC---------
T ss_pred HHHHHHHHHHHHHHHH-------------------------------------------------HhhccccccHhhHHH
Confidence 9999999999999988 889999999999999
Q ss_pred HhhcCCCC
Q psy15599 1608 SMQQIPDP 1615 (2347)
Q Consensus 1608 ~~~~l~~~ 1615 (2347)
+|.++++.
T Consensus 203 a~~~~~~~ 210 (216)
T 4f7g_B 203 AINQLDEG 210 (216)
T ss_dssp --------
T ss_pred HHHhhccc
Confidence 99999874
No 18
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=100.00 E-value=8.4e-37 Score=384.00 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=246.1
Q ss_pred cccceeEEEEeCCCc----EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhh
Q psy15599 84 RRKMRTLKVRMLDGT----LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKE 159 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~----~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~ 159 (2347)
.+..+.++|+|+||+ .+.+.+++++|++|++..||++|||.+.++||||+.....
T Consensus 4 ~~~~~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~--------------------- 62 (375)
T 2al6_A 4 ERVLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQS--------------------- 62 (375)
T ss_dssp CCEEEEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTS---------------------
T ss_pred ccccceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCC---------------------
Confidence 456678999999998 9999999999999999999999999999999999975411
Q ss_pred hhHHHHHHHhhhccCccccccccchhhhhcC-------CCCCceEEEEEEeecCCCC-CCCCChhhHHHHHHHhHhhhcc
Q psy15599 160 RDLKMEQLRKKLKTDDEVNWIDFSKTLREQG-------IDENEPVLLRRKFFFSDGN-IDSHDPVQLNLLYVQARDAVLD 231 (2347)
Q Consensus 160 ~~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQg-------v~e~~~L~LRrKff~~d~~-~~~~D~v~l~lLY~Qar~dIL~ 231 (2347)
++..||++++++.++. ...+|+|+||+|||+.+.. ....|+++++|+|.|+|+||++
T Consensus 63 ---------------~~~~wL~~~~~l~~~~~k~~~~~~~~~~~l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~ 127 (375)
T 2al6_A 63 ---------------EEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYML 127 (375)
T ss_dssp ---------------SCEEEECTTSBHHHHHHHHHTTSCGGGEEEEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------------CceEeeCCccchhhhhhhhhcccCCCceEEEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHc
Confidence 1247888888887652 2347999999999988653 2346999999999999999999
Q ss_pred CC-CcCCHHHHHHHHhHHHhhhcCCCCCCCC--C--CCc----cccccccchhhhh---hhhHHHHHHHHHHhccCCCHH
Q psy15599 232 GT-HPVTQDLACQLAGIQTHIQFGDYNPSKH--K--PPF----LDLKEFLPQSYVK---VKGIEKKIFSEHKNHVGLSEL 299 (2347)
Q Consensus 232 G~-~p~see~ai~LAALqlQie~GD~~~~k~--~--~~~----l~l~~~lP~~~lk---~k~~~~~I~~~hk~l~glS~~ 299 (2347)
|+ +||+.++++.||||++|++||||+...+ + .+| ..+++|+|+.+++ .+.|+++|...|+++.|+++.
T Consensus 128 g~~~~~~~e~al~LAaL~~q~~~gD~~~~~~~~k~~~~~l~k~~~l~~flP~~~~~~~~~~~~~k~I~~~~k~~~g~s~~ 207 (375)
T 2al6_A 128 EIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNRE 207 (375)
T ss_dssp HTTTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTCGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHhhhccchhhcccCCHHHhhhcccHHHhCCHHHHHHhChHHHHHHHHHHHHHhhCCCHH
Confidence 99 8999999999999999999999975421 1 122 2478999999974 468999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeee-------Cce
Q psy15599 300 DAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS-------SNV 372 (2347)
Q Consensus 300 eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~-------~~~ 372 (2347)
+||.+||+++++||+||+++|.|+.. .|++.+.+++||++. ||.+++++.+++...|+|++|.+|.+. ...
T Consensus 208 eAk~~yL~~~~~l~~yG~~~F~v~~~-~~~~~~~~l~lg~~~-GI~~~~~~~~~~~~~~~f~~I~~i~~~~~~~~~~~~~ 285 (375)
T 2al6_A 208 ESILKFFEILSPVYRFDKECFKCALG-SSWIISVELAIGPEE-GISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGM 285 (375)
T ss_dssp HHHHHHHHHHTTTCCCSCEEEEEEEC-SSSCEEEEEEEETTT-EEEEESSTTSCEEEEECGGGEEEEEEECCSSSCCCEE
T ss_pred HHHHHHHHHHhhcccCCcEEEEEeec-CCCCcceEEEEecCC-CEEEEeCCCCceEEEechhHccEEEEEeccccCCceE
Confidence 99999999999999999999999985 566778889999975 999999888889899999999999762 246
Q ss_pred EEEEeCCC-cCcEEEEec-hHHHHHHHHHHHHHHHHHhhh
Q psy15599 373 FTLDFGDY-SDNYYSVQT-TEAEQIQQLIAGYIDIILKKK 410 (2347)
Q Consensus 373 f~I~~~d~-~~~~f~~~T-~q~k~I~~LI~gYi~l~lk~r 410 (2347)
|+|.+.+. ....|.|+| .+++.|..||.||++++++.+
T Consensus 286 ~~I~v~~~~~~~~f~~~t~~~a~~i~~Li~gY~rl~~~~~ 325 (375)
T 2al6_A 286 LQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGAT 325 (375)
T ss_dssp EEEEETTCSSCEEEEESSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred EEEEECCCCCcEEEEeCCHHHHHHHHHHHhhheEEecCCC
Confidence 88887664 345899999 589999999999999999654
No 19
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=100.00 E-value=1.4e-35 Score=392.98 Aligned_cols=294 Identities=20% Similarity=0.236 Sum_probs=238.2
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHH
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLK 163 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k 163 (2347)
.++...++|+||||+.+++.||+++|+.|++..||.+|||.+.++||||+...++.. ++. ...++.
T Consensus 260 ~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~dk~~---------sll-----~~~e~v 325 (655)
T 3pvl_A 260 SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVS---------SLG-----SGSDHV 325 (655)
T ss_dssp HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETTEEE---------EEE-----TSSCBH
T ss_pred cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCCcee---------ecc-----cCceEe
Confidence 345677999999999999999999999999999999999999999999997553211 000 011112
Q ss_pred HHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCH-HHHH
Q psy15599 164 MEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQ-DLAC 242 (2347)
Q Consensus 164 ~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~se-e~ai 242 (2347)
++.++ .|.+..+....+....+++|+||+|||++.... ..|+++++|+|.|+++||+.|+|||+. ++++
T Consensus 326 lD~l~---------~~E~~~k~~~~~~~~~~~~L~FRvkff~p~~~~-~~d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~ 395 (655)
T 3pvl_A 326 MDAIS---------QCEQYAKEQGAQERNAPWRLFFRKEVFTPWHNP-SEDNVATNLIYQQVVRGVKFGEYRCEKEDDLA 395 (655)
T ss_dssp HHHHH---------HHHHHHHTTTCCGGGCCCEEEEEECCCCTTCCG-GGCHHHHHHHHHHHHHHHHHTSSCCSSHHHHH
T ss_pred ecHHH---------HHHHHHHhhccccCCCCeEEEEEEEEecCCccc-ccCHHHHHHHHHHHhcccccCccCCChHHHHH
Confidence 22111 233222222222234589999999999765444 479999999999999999999999985 5999
Q ss_pred HHHhHHHhhhcCCCCCCCCCCCccccccccchhhhh----hhhHHHHHHHHHHhc----cCCCHHHHHHHHHHHh-ccCC
Q psy15599 243 QLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVK----VKGIEKKIFSEHKNH----VGLSELDAKVLYTKTC-RSLP 313 (2347)
Q Consensus 243 ~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk----~k~~~~~I~~~hk~l----~glS~~eAk~~YL~~~-rslp 313 (2347)
+||||++|+++|||.+..+. +..+++|+|..+++ .+.|+++|.+.|+++ .|+++.+|+.+||+++ ++||
T Consensus 396 ~LAAl~~Qae~Gd~~~~~~~--~~~L~~~lP~~~l~~~~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp 473 (655)
T 3pvl_A 396 ELASQQYFVDYGSEMILERL--LSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWP 473 (655)
T ss_dssp HHHHHHHHHHHTTCCCHHHH--HHHHHHHSCGGGCCSSSCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcchhhH--HHHHHHhCCHHHHhccCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999754332 23578999999864 358999999999999 8999999999999999 7999
Q ss_pred CCCcEEEEEEEccCCCCcc-eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC------ceEEEEeCCCcCcEEE
Q psy15599 314 TYGVTFFLVKEKMKGKNKL-VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS------NVFTLDFGDYSDNYYS 386 (2347)
Q Consensus 314 ~YG~t~F~Vk~k~~g~~~~-~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~------~~f~I~~~d~~~~~f~ 386 (2347)
+||++||.|+.. .|++.+ .++|||||+.||++++++++..+ .|||++|.+|.+++ ++|+|...+. ..|.
T Consensus 474 ~YG~~fF~vk~~-~g~~lp~~~l~LgVn~~GV~v~d~~~k~ll-~f~~~eI~~is~~~~~~~~~~~ftl~~~~~--~~~~ 549 (655)
T 3pvl_A 474 LLFSRFYEAYKF-SGPPLPKSDVIVAVNWTGVYFVDEQEQVLL-ELSFPEIMAVSSSRGTKMMAPSFTLATIKG--DEYT 549 (655)
T ss_dssp TTSCEEEEEEEE-ESSCCSCSEEEEEEETTEEEEECTTCCEEE-EEEGGGEEEEEEECCCSSSCCEEEEEETTS--CEEE
T ss_pred ccCcEEEEEEec-CCCCCCCccEEEEEcCCceEEEcCCCceEE-EechhHceEEeccCcccccccEEEEEeccC--ceEE
Confidence 999999999975 566655 38999999999999999998554 89999999999987 5899987543 4799
Q ss_pred EechHHHHHHHHHHHHHHHHH
Q psy15599 387 VQTTEAEQIQQLIAGYIDIIL 407 (2347)
Q Consensus 387 ~~T~q~k~I~~LI~gYi~l~l 407 (2347)
|.|++++.|..||.+|++.+-
T Consensus 550 F~T~~a~~I~~LI~~yi~~Lk 570 (655)
T 3pvl_A 550 FTSSNAEDIRDLVVTFLEGLR 570 (655)
T ss_dssp EECTTHHHHHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998873
No 20
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=100.00 E-value=6.8e-35 Score=341.59 Aligned_cols=200 Identities=69% Similarity=1.090 Sum_probs=183.7
Q ss_pred CCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHH
Q psy15599 212 SHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHK 291 (2347)
Q Consensus 212 ~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk 291 (2347)
..||++++|+|.|+++||++|++||+.+++++||||++|+++|||++..+.++|+.+++|+|+++++.+ |+++|.+.|+
T Consensus 23 ~~Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~-~~~~I~~~h~ 101 (222)
T 4f7g_A 23 SRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQK-GERKIFQAHK 101 (222)
T ss_dssp ---CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGGC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhhh-hHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999988654 6889999999
Q ss_pred hccCCCHHHHHHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCc
Q psy15599 292 NHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSN 371 (2347)
Q Consensus 292 ~l~glS~~eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~ 371 (2347)
+++|+++.+|+.+||++|++||+||++||.|+.+.+|++.+.+++|||+++||.++++++++++..|||++|.+|.++++
T Consensus 102 ~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~~~I~~~~~~~~ 181 (222)
T 4f7g_A 102 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPK 181 (222)
T ss_dssp TTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEGGGCCEEEECSS
T ss_pred hccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccHHHeeeeccCCC
Confidence 99999999999999999999999999999999875577777899999999999999999999999999999999999999
Q ss_pred eEEEEeCCCcCcEEEEechHHHHHHHHHHHHHHHHHhhhcc
Q psy15599 372 VFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMS 412 (2347)
Q Consensus 372 ~f~I~~~d~~~~~f~~~T~q~k~I~~LI~gYi~l~lk~rr~ 412 (2347)
.|+|.+++..++.|.|+|+++++|..||.+||++++++||+
T Consensus 182 ~f~I~~~~~~~~~~~~~T~q~~~I~~Li~~Yi~~~~~~r~~ 222 (222)
T 4f7g_A 182 SFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKKKS 222 (222)
T ss_dssp EEEEECCTTSSSCEEEECSCHHHHHHHHHHHHHHTC-----
T ss_pred EEEEEECCccceEEEEECCcHHHHHHHHHHHHHHHHHhhcC
Confidence 99999998877789999999999999999999999988763
No 21
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=100.00 E-value=2.6e-35 Score=341.45 Aligned_cols=205 Identities=68% Similarity=1.125 Sum_probs=193.3
Q ss_pred EEeecCCCCCCCCChhhHHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhh
Q psy15599 201 RKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVK 280 (2347)
Q Consensus 201 rKff~~d~~~~~~D~v~l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k 280 (2347)
+||||+|++....||++++++|.|+++||++|++||+.+++++||||++|+++|||++.+|.++|+.+.+|+|+++++.+
T Consensus 1 vkf~~~d~~~~~~d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~ 80 (206)
T 1mix_A 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK 80 (206)
T ss_dssp CCCCCCHHHHHTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTC
T ss_pred CcccCCCCCCCcCCHHHHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcc
Confidence 48998887755789999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeec
Q psy15599 281 GIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPL 360 (2347)
Q Consensus 281 ~~~~~I~~~hk~l~glS~~eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~ 360 (2347)
+ +++|.+.|++++|+++.+|+.+||++|++||+||++||.|+.+.+|++.+.++||||+++||+++++++++++.+|||
T Consensus 81 ~-~~~i~~~~~~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~ 159 (206)
T 1mix_A 81 G-ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL 159 (206)
T ss_dssp C-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEG
T ss_pred c-HHHHHHHHHHccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeeh
Confidence 7 899999999999999999999999999999999999999998755777788999999999999999999999999999
Q ss_pred cccceeeeeCceEEEEeCCCcCcEEEEechHHHHHHHHHHHHHHHH
Q psy15599 361 TTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDII 406 (2347)
Q Consensus 361 ~~I~~w~~~~~~f~I~~~d~~~~~f~~~T~q~k~I~~LI~gYi~l~ 406 (2347)
++|.+|.++++.|+|.+++..+..|.|+|+++++|+.||.+||+++
T Consensus 160 ~~I~~~~~~~~~f~i~~~~~~~~~~~~~t~~~~~i~~Li~~Yi~~~ 205 (206)
T 1mix_A 160 TNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDII 205 (206)
T ss_dssp GGCCEEEECSSEEEEECGGGSSSCEEEECSCHHHHHHHHHTTSCCC
T ss_pred hHeeecccCCCEEEEEeCcccceEEEEECCcHHHHHHHHHHHHHHh
Confidence 9999999999999999998866689999999999999999999764
No 22
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=349.52 Aligned_cols=284 Identities=19% Similarity=0.239 Sum_probs=240.0
Q ss_pred cceeEEEEe------CCCcEEEEEEcCCCcHHHHHHHHH--HHhCC--CCCCcceeEEecCCcccccCCCCcccchhchh
Q psy15599 86 KMRTLKVRM------LDGTLKTLLVDDSQPVANLMVVIC--TKIGI--TNHDEYSLVRENPEDEVENKPNFGTLTLKRKK 155 (2347)
Q Consensus 86 ~~r~lkV~L------~DG~~~~v~Vd~sttv~evv~~Ic--~~LGL--~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~ 155 (2347)
+.|.++|++ |||+++.|++|.++||+||+..|| .++|| .+.++|||++....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~------------------ 81 (392)
T 4eku_A 20 DVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMK------------------ 81 (392)
T ss_dssp GEEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESS------------------
T ss_pred eeeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECC------------------
Confidence 578899999 999999999999999999999999 68885 67899999987431
Q ss_pred hhhhhhHHHHHHHhhhccCccccccccchhhhhcC-------CCCCceEEEEEEeecCCC-CCCCCChhhHHHHHHHhHh
Q psy15599 156 EEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQG-------IDENEPVLLRRKFFFSDG-NIDSHDPVQLNLLYVQARD 227 (2347)
Q Consensus 156 ~~~~~~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQg-------v~e~~~L~LRrKff~~d~-~~~~~D~v~l~lLY~Qar~ 227 (2347)
.+...||++++++.++. ....|+|+||+||||.+. +....|+++++|||.|+|.
T Consensus 82 ------------------~~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~ylY~Q~r~ 143 (392)
T 4eku_A 82 ------------------SDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRN 143 (392)
T ss_dssp ------------------SCCEEEECTTSBHHHHHHHSTTTSCGGGEEEEEEECSCCTTTHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CCceEECCCCCcHHHHHhhhhhccCCCceEEEEEEEEEcCCHHHhhhcChHHHHHHHHHHHH
Confidence 11347888888887642 224789999999998875 4445799999999999999
Q ss_pred hhccCC-CcCCHHHHHHHHhHHHhhhcCCCCCCC--CCC------Cccccccccchhhhh---hhhHHHHHHHHHHhccC
Q psy15599 228 AVLDGT-HPVTQDLACQLAGIQTHIQFGDYNPSK--HKP------PFLDLKEFLPQSYVK---VKGIEKKIFSEHKNHVG 295 (2347)
Q Consensus 228 dIL~G~-~p~see~ai~LAALqlQie~GD~~~~k--~~~------~~l~l~~~lP~~~lk---~k~~~~~I~~~hk~l~g 295 (2347)
||++|. ++|+.|++++||||++|+.|||++... ++. ++..+++|+|+.+++ .+.|+++|...|+++.|
T Consensus 144 D~l~g~~~~~~~e~al~LAaL~~q~~~gd~~~~a~~~k~~~~~l~k~~~lk~flP~~l~~~ik~k~~rk~I~~~~kk~~~ 223 (392)
T 4eku_A 144 DYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYAS 223 (392)
T ss_dssp HHHHHTTTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHHTCGGGTSCHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhccCCCHHHHhhhccHHHhcCHHHHhhcCHHHHHHHHHHHHHHhcC
Confidence 999998 789999999999999999999997532 111 123578999999865 46899999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC-----
Q psy15599 296 LSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS----- 370 (2347)
Q Consensus 296 lS~~eAk~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~----- 370 (2347)
+++.+||.+||+.+++||+||+++|.|+.. .|++.+..++||+ +||.+++++++++...|+|.+|.+|....
T Consensus 224 ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~-s~~~~~~~L~Vg~--~GIs~~~~k~~~~~~~~~f~~I~~Is~~~~s~~~ 300 (392)
T 4eku_A 224 LREEECVMKFFNTLAGFANIDQETYRCELI-QGWNITVDLVIGP--KGIRQLTSQDAKPTCLAEFKQIRSIRCLPLEEGQ 300 (392)
T ss_dssp CCHHHHHHHHHHHHTTSSCCSCEEEEEEEE-SSSCCCEEEEEET--TEEEEECSSCSCCEEEECGGGBCCCCEEEETTTE
T ss_pred CCHHHHHHHHHHHHHhhhccCcEEEEEEec-cCCcceeEEEEcC--CcEEEECCCCCceeEEechHHceEEEEEeccCCc
Confidence 999999999999999999999999999984 6666666666665 59999999999999999999999997532
Q ss_pred ceEEEEeCCCc-CcEEEEec-hHHHHHHHHHHHHHHHHHh
Q psy15599 371 NVFTLDFGDYS-DNYYSVQT-TEAEQIQQLIAGYIDIILK 408 (2347)
Q Consensus 371 ~~f~I~~~d~~-~~~f~~~T-~q~k~I~~LI~gYi~l~lk 408 (2347)
..|+|.+++.. ...|.|+| .+++.|+.||.||++++..
T Consensus 301 ~~v~I~~~~~~~~l~~~~~s~~~A~~~~~LidGY~RL~~d 340 (392)
T 4eku_A 301 AVLQLGIEGAPQALSIKTSSLAEAENMADLIDGYCRLQGE 340 (392)
T ss_dssp EEEEECBTTCSSCEEEEESCHHHHHHHHHHHHHHHHHHSS
T ss_pred eEEEEEECCCCcceEEEeCCHHHHHHHHHHHHHHHhhccC
Confidence 46888888765 34799999 8899999999999999963
No 23
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=99.95 E-value=2e-27 Score=257.57 Aligned_cols=154 Identities=40% Similarity=0.540 Sum_probs=144.9
Q ss_pred cccchhhhHHHHHHHHhhcCCCCCCCCCccccccccchhHhHHHHHHHHHHHHHHhHHhhhhcccCchhhhhhHHHHHHH
Q psy15599 1593 HFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQ 1672 (2347)
Q Consensus 1593 ~~~g~~~~~~d~I~~~~~~l~~~~~~~~~~~~~~~~s~~~~qt~m~~~ak~ia~~~~~~~~~a~~~~~~l~~~~~~~s~~ 1672 (2347)
++.|.+.|++|+|+++|.++++... ... .++|+||||+|++++|+||+++++|++++.++|++||+|+.+|+++
T Consensus 11 se~g~v~glvd~I~~ai~~l~~~~~----~~~--~~sf~dYQt~m~~~~K~iA~~aq~mv~k~~~~p~eL~~la~~it~~ 84 (165)
T 2kvp_A 11 SAAGVVGGMVDSITQAINQLDEGPM----GDP--EGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSD 84 (165)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHCCC----CCC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHhhcccC----CCC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999988421 112 2599999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy15599 1673 YSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACINTVTMAATCQTS-GDDYTHREFADTNRVLAEKVSQVLYALQAGS 1751 (2347)
Q Consensus 1673 ~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~~~~-~d~~t~~~l~~~ar~v~e~v~~l~aal~~g~ 1751 (2347)
|..||.+++||+.+++|++++++|++.||+||.+|+.||+++|..+++ .|++++++|++++|.|+|+|.+||++|++|+
T Consensus 85 y~~La~~~~~A~~t~~~~~i~~~Ik~~Vq~LG~sc~~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsekVs~vLaALqaGs 164 (165)
T 2kvp_A 85 YGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAGN 164 (165)
T ss_dssp HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999998 6999999999999999999999999999998
Q ss_pred C
Q psy15599 1752 R 1752 (2347)
Q Consensus 1752 ~ 1752 (2347)
|
T Consensus 165 r 165 (165)
T 2kvp_A 165 R 165 (165)
T ss_dssp C
T ss_pred c
Confidence 6
No 24
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=99.94 E-value=3.3e-26 Score=256.76 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=161.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhhhhhcHHHHHHHHhcCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15599 1740 VSQVLYALQAGSRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAAS 1819 (2347)
Q Consensus 1740 v~~l~aal~~g~~G~qac~~a~~~vsgii~dLd~ti~fA~ag~l~~~~~~~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~ 1819 (2347)
+..|+.+|++++||+.+|++|+..++.+|+|||.++|||.+|+|.++. +.+...+++.|+..+++|.+....|+..+.+
T Consensus 13 ~~~lisaird~APGQ~eCd~AI~~in~~i~dLd~AsLaA~s~~L~~~~-~~s~~~~qeq~~~~~~eL~~~i~~l~~AAk~ 91 (216)
T 4f7g_B 13 LGTENLYFQSKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPRE-GISQEALHTQMLTAVQEISHLIEPLASAARA 91 (216)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CccHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Confidence 578999999999999999999999999999999999999999999884 6689999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CchhhHHHHHHH
Q psy15599 1820 SQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTI-NDPCMNHLKESA 1898 (2347)
Q Consensus 1820 ~qe~La~aa~~~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~a~~~li~atk~a~g~p~-~~~~~~~L~~~a 1898 (2347)
++|+||++++++.+++++|+..+|. |+|. ..|+.+|+.||+++|.|++++.+||+++|+++|||+ +...|..|++++
T Consensus 92 ~~e~LG~av~~~a~~~epLv~aa~g-aAS~-t~ds~~Q~~lLdq~Ktv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa 169 (216)
T 4f7g_B 92 EASQLGHKVSQMAQYFEPLTLAAVG-AASK-TLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAV 169 (216)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHH-HHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHhHHHHHHHHH-HHHc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHH
Confidence 9999999999999999999999955 4455 569999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q psy15599 1899 KVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAIAQ 1935 (2347)
Q Consensus 1899 ~~~~~~v~~ll~tv~~v~~e~~rgt~ale~~~~~I~~ 1935 (2347)
+.|+|+|++|+.||..+.+|.|.+++++|++.++|.+
T Consensus 170 ~~l~eai~d~~~tl~~~ase~G~v~g~vd~i~~a~~~ 206 (216)
T 4f7g_B 170 QMMTEAVEDLTTTLNEAASAAGVVGGMVDSITQAINQ 206 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHhhHHHHHHh
Confidence 9999999999999999999999999999999998843
No 25
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=99.93 E-value=4.2e-25 Score=237.81 Aligned_cols=154 Identities=31% Similarity=0.519 Sum_probs=149.9
Q ss_pred CCcchHHHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhHhhHHHHHHHHHH
Q psy15599 928 LLPGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVK-NPANLPASSKQYSHSLQNL 1006 (2347)
Q Consensus 928 ~lpgq~~l~~Aie~i~~a~~~l~~~~~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~-~~~~L~~~sk~~a~~~~~L 1006 (2347)
.||||||||+|++.|..+...+..+.||+++++|+++|.+|+.+|.+||++++++|.++| +|.+|+.++++|+.+|.+|
T Consensus 3 ~LPGqrdvd~Ai~~I~~as~~l~~~~~~~~~~~~~~~Q~eL~~aA~~Ln~A~~~vv~aargsp~~La~as~~f~~~~~~l 82 (158)
T 2l10_A 3 DPFTQRDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRGTPQDLARASGRFGQDFSTF 82 (158)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHTTTCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999988899999999999999999999999999999999988 6779999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15599 1007 VDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNICTSA 1081 (2347)
Q Consensus 1007 ~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a~~~a 1081 (2347)
++++++||++|+|++.|.+||+.+++++..+++||.++|++..||++|+++++|.+++|.|+++||+||+.|+.+
T Consensus 83 ~~ag~~mag~~~~~~~r~~iv~~L~~vs~~s~~LL~~ak~~~~dp~~pn~~~~L~sAaR~VtesIN~Lv~~ct~~ 157 (158)
T 2l10_A 83 LEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLITMCTQQ 157 (158)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
No 26
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=99.92 E-value=5.4e-25 Score=230.81 Aligned_cols=125 Identities=42% Similarity=0.576 Sum_probs=122.8
Q ss_pred cchhHhHHHHHHHHHHHHHHhHHhhhhcccCchhhhhhHHHHHHHHhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHH
Q psy15599 1628 DSYVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTAC 1707 (2347)
Q Consensus 1628 ~s~~~~qt~m~~~ak~ia~~~~~~~~~a~~~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~ 1707 (2347)
++|+||||+|++++|+||+++++|++++.++|++||+|+.+|+++|..||.+++||+++++|++++++|+..|++||.+|
T Consensus 12 ~sfvdYQt~m~~~~K~iA~~aqemv~ks~~~p~eL~~la~~lt~~Y~~La~~~~~A~~~~~~~~v~~~Ir~~Vq~LG~ac 91 (137)
T 2b0h_A 12 GSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGC 91 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15599 1708 INTVTMAATCQTS-GDDYTHREFADTNRVLAEKVSQVLYALQAGSR 1752 (2347)
Q Consensus 1708 ~~lv~aa~~~~~~-~d~~t~~~l~~~ar~v~e~v~~l~aal~~g~~ 1752 (2347)
+.||+.+|..+++ .|++++++|++++|.|+|+|.+||++|++|+|
T Consensus 92 ~~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsEkVs~vLAALqaGsr 137 (137)
T 2b0h_A 92 SALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAGNR 137 (137)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999998 69999999999999999999999999999986
No 27
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.90 E-value=3e-23 Score=279.90 Aligned_cols=284 Identities=15% Similarity=0.212 Sum_probs=227.9
Q ss_pred cceeEEEEeCCCc----EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhh
Q psy15599 86 KMRTLKVRMLDGT----LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERD 161 (2347)
Q Consensus 86 ~~r~lkV~L~DG~----~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~ 161 (2347)
..+.|+|+++||. ++.|+++..+||++++..||+++||.+.++|||.+....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~------------------------ 61 (656)
T 2j0j_A 6 VLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQ------------------------ 61 (656)
T ss_dssp EEEEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESS------------------------
T ss_pred hhhheEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecc------------------------
Confidence 4567889999998 999999999999999999999999999999999987541
Q ss_pred HHHHHHHhhhccCccccccccchhhhh------cC-CCCCceEEEEEEeecCCCCCC-CCChhhHHHHHHHhHhhhccCC
Q psy15599 162 LKMEQLRKKLKTDDEVNWIDFSKTLRE------QG-IDENEPVLLRRKFFFSDGNID-SHDPVQLNLLYVQARDAVLDGT 233 (2347)
Q Consensus 162 ~k~~~Lk~~l~~~~~~~WLd~~ktL~e------Qg-v~e~~~L~LRrKff~~d~~~~-~~D~v~l~lLY~Qar~dIL~G~ 233 (2347)
.++..||++.+++.+ +. ...+|++.||+||||.++..+ ..|..++++||.|+|.||++|+
T Consensus 62 ------------~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~ 129 (656)
T 2j0j_A 62 ------------SEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEI 129 (656)
T ss_dssp ------------SCCEEEECTTSBHHHHHHHHTTTSCTTSEEEEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ------------cCceeeeCCCCcHHHHHhhhcccCCCcceEEEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhcc
Confidence 023489999888776 33 335899999999999877654 4788899999999999999999
Q ss_pred Cc-CCHHHHHHHHhHHHhhhcCCCCCCCCC--------CCccccccccchhhhh---hhhHHHHHHHHHHhccCCCHHHH
Q psy15599 234 HP-VTQDLACQLAGIQTHIQFGDYNPSKHK--------PPFLDLKEFLPQSYVK---VKGIEKKIFSEHKNHVGLSELDA 301 (2347)
Q Consensus 234 ~p-~see~ai~LAALqlQie~GD~~~~k~~--------~~~l~l~~~lP~~~lk---~k~~~~~I~~~hk~l~glS~~eA 301 (2347)
.+ |..++++.||+|.+|..|||++..... .....+++|||+.+++ .+.++++|.+.|+++.++++.++
T Consensus 130 ~~~~~~~~al~La~l~~~~~~~d~~~~a~~~~~~~~~~~k~~~~~~fiP~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~~ 209 (656)
T 2j0j_A 130 ADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREES 209 (656)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTTGGGTSCHHHHHHSCHHHHHHHHHHHHGGGTTCCHHHH
T ss_pred cccccHhHHHHHHHHHHHHHhhhccchhhhcCCCHHHHHhhccHHHhCCHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHH
Confidence 86 899999999999999999999653110 1123578999999875 45789999999999999999999
Q ss_pred HHHHHHHhccCCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeee----C---ceEE
Q psy15599 302 KVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS----S---NVFT 374 (2347)
Q Consensus 302 k~~YL~~~rslp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~----~---~~f~ 374 (2347)
+++||+.++.++.||...|.|+.. .|++....++||... ||.....+.+.+...+.|++|.++.+. . ..+.
T Consensus 210 ~lk~l~~l~~~~~yg~e~f~~~~~-~g~~~~~~l~vg~~~-GI~~~~~~~~~~~~~~~f~~I~~I~~~~~~~~~~k~~~~ 287 (656)
T 2j0j_A 210 ILKFFEILSPVYRFDKECFKCALG-SSWIISVELAIGPEE-GISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQ 287 (656)
T ss_dssp HHHHHHHHGGGCCTTSEEEEEEEE-SSSEEEEEEEEETTT-EEEECCSSSSCCEEEECGGGEEEBCEEECSSSSCCEEEE
T ss_pred HHHHHHHhccccccCceEEeeccC-CCCcccEEEEECCCC-CeEEECCCCCCceecccccceeEEEEeeccccCCcceEE
Confidence 999999999999999999999985 554323444555422 999887766677778999999999654 1 3455
Q ss_pred EEeC-CCcCcEEEEec-hHHHHHHHHHHHHHHHHH
Q psy15599 375 LDFG-DYSDNYYSVQT-TEAEQIQQLIAGYIDIIL 407 (2347)
Q Consensus 375 I~~~-d~~~~~f~~~T-~q~k~I~~LI~gYi~l~l 407 (2347)
+... +.....+.+.+ ..++.+..||.||..+..
T Consensus 288 ~~~~~~~~~l~i~~~s~~~ae~~a~LidGy~rL~~ 322 (656)
T 2j0j_A 288 LKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVN 322 (656)
T ss_dssp EEESSCSSCEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred EEeccCCcceEEECCCchhhHHHHHhhcceeeeec
Confidence 5443 33233556655 358999999999988864
No 28
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=99.88 E-value=2.5e-22 Score=209.71 Aligned_cols=131 Identities=45% Similarity=0.628 Sum_probs=121.5
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcch--HHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHH
Q psy15599 765 ETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDV--ETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQ 842 (2347)
Q Consensus 765 ~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~--~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~ 842 (2347)
.++.|+..+.+|..|++.|+.+|++||+|+|.....+.+.+ ++.||+|++++++||.++|+|++||++||.|++++.+
T Consensus 6 ~A~~d~~~~~~l~~AA~~Vt~aL~dLL~hik~~~~~~~~~~~~~~~~d~Il~~t~~l~~s~gd~~eMvrqak~Laqat~~ 85 (139)
T 1u89_A 6 AATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSD 85 (139)
T ss_dssp CCCTTCHHHHTHHHHHHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999998755444333 8999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q psy15599 843 LIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQE 895 (2347)
Q Consensus 843 Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~ 895 (2347)
||+.+|.+|+..+||+.|++||.+||.|+++|++||+++|+|+.||+|++.|+
T Consensus 86 LV~~iK~eAe~~~D~~~q~rLL~AAk~lAdATa~mVeAAk~~a~nP~~~~~q~ 138 (139)
T 1u89_A 86 LVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQ 138 (139)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSCCCC
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhc
Confidence 99999999999999999999999999999999999999999999999987653
No 29
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=99.86 E-value=4.6e-20 Score=218.32 Aligned_cols=315 Identities=16% Similarity=0.188 Sum_probs=271.2
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHhhhhHHHHHHHhhHHHHhhhH
Q psy15599 1378 DVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFSV 1457 (2347)
Q Consensus 1378 ~~aPGQkECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~~~~~~s~~~~~e~~~~~~~~l~~~i~~l~~A~~~~~e~l~~~v 1457 (2347)
+.+||+.+|++|+..++.+|.|||..+|-+.++.|.+..+ .+...++|++...++.|-+.+++|..+.+...|+|+..+
T Consensus 9 ~~~~GtqaC~~A~~~v~~ii~DLdtt~lFA~AGtL~~~~~-~~f~~~~e~Ilk~ak~Lve~~~~Lv~~a~~tqe~La~aa 87 (332)
T 3dyj_A 9 DPFTGTQACITAASAVSGIIADLDTTIMFATAGTLNREGA-ETFADHREGILKTAKVLVEDTKVLVQNAAGSQEKLAQAA 87 (332)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTT-CCGGGTHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 5799999999999999999999999999999999998776 889999999999999999999999999999999999999
Q ss_pred HHHhhhhchhhhhHHHhhhcc--cChhhhhHHHHhhhHHHHHHHHHHHHHHhhCCCCCCCccccchHHHHHHHHHHHHHH
Q psy15599 1458 NQLVTSFDSLASDSMNVASNL--IHSKQQMTLLDQTKTVAECLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDI 1535 (2347)
Q Consensus 1458 ~~~~~~~~~l~~~a~~aas~~--~~~~~q~~~~~~sK~v~es~~~L~~~aK~~~gnp~~~~~~~~~~~a~~~~~eav~~l 1535 (2347)
+..++++.+|...++..++.+ .||+.|+.|+..+|.|+.++.+|+++.|...|+|.+...+..|.++...|.++|..|
T Consensus 88 ~~~a~~i~~La~~vK~gAAsl~~~d~~tQv~lLna~kdVa~al~~Li~atK~A~G~~~~dpa~~~Lk~aAk~mv~nV~sL 167 (332)
T 3dyj_A 88 QSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSL 167 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887 999999999999999999999999999999999997777888999999999999999
Q ss_pred HhhhhhhcccccccccccccccccCCCCCCCCCcccccccccchhcccccCCCCCcccccchhhhHHHHHHHHhhcCCCC
Q psy15599 1536 TSSLDHFTGVVNTFVDSITKSMQQIPDPNQPNSHYASDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSITKSMQQIPDP 1615 (2347)
Q Consensus 1536 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~d~I~~~~~~l~~~ 1615 (2347)
..++..+. ++...|.+ .....++.|++.+..+..|
T Consensus 168 lktVk~ve-------de~~rG~R--------------------------------------aLEaai~~I~~el~~~~s~ 202 (332)
T 3dyj_A 168 LKTVKAVE-------DEATKGTR--------------------------------------ALEATTEHIRQELAVFCSP 202 (332)
T ss_dssp HHHHHHHH-------HHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhh-------ccccchhH--------------------------------------HHHHHHHHHHHHHHccCCC
Confidence 98854222 11111100 1335788888888766554
Q ss_pred CCCCCccccccccchhHhHHHHHHHHHHHHHHhHHhhhhccc-CchhhhhhHHHHHHHHhhhhhHHhhhhhhCC-Chhhh
Q psy15599 1616 NQPSSHYASDSVDSYVDYHTRMVGSSKEIARISQEMMTKSWS-DVKSMSGLSSQLTHQYSKLCTDCIGAVASAS-NPEVS 1693 (2347)
Q Consensus 1616 ~~~~~~~~~~~~~s~~~~qt~m~~~ak~ia~~~~~~~~~a~~-~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~-~~~~~ 1693 (2347)
..+ . + -.-.+++++++|.|...+-.++.+..+ .+++|...++..-..+..|...+++++..++ +++++
T Consensus 203 ~~p------~--~--~~tpE~li~~ak~vt~atakaVaA~ns~~qeDii~aan~~r~aV~dll~~~k~aa~~~~~~~e~r 272 (332)
T 3dyj_A 203 EPP------A--K--TSTPEDFIRMTKGITMATAKAVAAGNSCRQEDVIATANLSRRAIADMLRACKEAAFHPEVAPDVR 272 (332)
T ss_dssp SCC------S--S--CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCHHHH
T ss_pred CCC------c--C--CCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 211 1 0 124678999999999999899888887 7999999999999999999999999998888 88999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1694 GRLCGAVHDLGTACINTVTMAATCQTSGDDYTHREFADTNRVLAEKVSQVLYALQ 1748 (2347)
Q Consensus 1694 ~~i~~~~~~l~~s~~~lv~aa~~~~~~~d~~t~~~l~~~ar~v~e~v~~l~aal~ 1748 (2347)
.+....++++..++..|+.+++.-..++.+..+++|.+.+|.|.++|.+|+.+-+
T Consensus 273 ~~~~~~~k~~a~~~~~LL~~v~~~~~~P~~~~k~~L~~~Sr~VA~aVteLV~aa~ 327 (332)
T 3dyj_A 273 LRALHYGRECANGYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQAAE 327 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776666778899999999999999999998753
No 30
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=99.86 E-value=4.6e-21 Score=223.28 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=175.6
Q ss_pred hhhhhcchhhHhhhhHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhccccc
Q psy15599 592 ITSISHTLPEMSKGVRMLAALTPSGDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQT 671 (2347)
Q Consensus 592 i~~i~s~~~~~~~~~k~la~l~~~~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~~~ 671 (2347)
++.+|+.|+.+..|++.++ ...|.|+. +..++++..+.||+|++.|.+++.+|++.. .+..
T Consensus 89 ~~avg~aittI~snl~e~~----------~~vk~laa--------L~~d~~~~~~~Ll~AAk~l~~Ais~Llkaa-~~~~ 149 (308)
T 1sj8_A 89 YTAVGCAVTTISSNLTEMS----------RGVKLLAA--------LLEDEGGNGRPLLQAAKGLAGAVSELLRSA-QPAS 149 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHH--------HHHTTSSCCHHHHHHHHHHHHHHHHHHHHH-CTTC
T ss_pred cchhhhHHHHHHhhhHHHH----------HHHHHHHh--------hcCCCccchHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence 5667777777777777733 33444332 233343445679999999999999999976 5666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q psy15599 672 NEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKE 751 (2347)
Q Consensus 672 ~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~ 751 (2347)
+++++.|+++|+.|+.++..++...+.. ..+..+|++|+++||+||++|+.||.+||.|+.+++||++|++||.++++
T Consensus 150 ~e~rq~ll~AA~~Vg~as~~~l~~i~e~--~~d~~~~e~Li~aAKAVA~ATa~LV~~Ak~Va~~~~d~e~Q~~lI~AA~~ 227 (308)
T 1sj8_A 150 AEPRQNLLQAAGNVGQASGELLQQIGES--DTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQ 227 (308)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHTTCC--CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSSSSHHHHHHHHH
T ss_pred cchHHHHHHHHHhHhHHHHHHHHhcCcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 6788999999999999999988777642 34677999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh---ccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHHhcCChhH
Q psy15599 752 VANAVEGLVAMCNE---TCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPE 828 (2347)
Q Consensus 752 va~at~~Lv~aa~~---~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~~~~~a~~ 828 (2347)
|+.+|+|||.++|- .+++|.|+++|.+|++.|+.+++.|+..++.+.... +++..++.+
T Consensus 228 ~A~sTsQLVA~sKV~Apti~s~~cQeqL~~A~k~V~~av~~Lv~~~~~a~~d~----------------~~~~~l~~a-- 289 (308)
T 1sj8_A 228 CALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDG----------------QLLRGVGAA-- 289 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS----------------HHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------------HHHHHHHHH--
Confidence 99999999999884 478899999999999999999999999999776433 256666665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy15599 829 MVRQARILGQATAQLIQAIKGD 850 (2347)
Q Consensus 829 mv~~Ak~va~a~~~Lv~~~k~~ 850 (2347)
++.|.+++++|++++|..
T Consensus 290 ----a~~V~~aL~~Ll~~~~~~ 307 (308)
T 1sj8_A 290 ----ATAVTQALNELLQHVKAH 307 (308)
T ss_dssp ----HHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHHHHHHhhcc
Confidence 999999999999999865
No 31
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=99.83 E-value=1.3e-17 Score=222.90 Aligned_cols=355 Identities=12% Similarity=0.183 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch---HHHHHHHHHHHHH
Q psy15599 709 TSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENL---NKDLTKAAAEVTK 785 (2347)
Q Consensus 709 ~~li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~---~eqL~~Aa~~V~~ 785 (2347)
+.|-..+......+.+|+..|+.+..-+.|+...+.|..++.++...++|+|.+++..+.+|.+ .|+|..-.+.|.+
T Consensus 333 e~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~ 412 (832)
T 4igg_A 333 KEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEK 412 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 5777788899999999999999998888899999999999999999999999999999887766 8999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHH----------hcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy15599 786 TLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLA----------ASGDAPEMVRQARILGQATAQLIQAIKGDAENEP 855 (2347)
Q Consensus 786 al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~----------~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~ 855 (2347)
.++.|..+++...+ .++||.+++.-+. +.++++++.+.|..|++.++++++.++++.++.+
T Consensus 413 ~v~~L~~avDdi~d---------i~dFL~vSe~~i~~dv~~c~~Al~~~~~~~~~~~A~~I~gRa~rV~~V~~~Emdn~e 483 (832)
T 4igg_A 413 QVRVLTDAVDDITS---------IDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYE 483 (832)
T ss_dssp HHHHHHHHHHHTSC---------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998874 4568888776543 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCHHHHHHHHHHHHHHHhhcchHHHHHhhhhccccccccCCc
Q psy15599 856 DSELQRRLLAAAKNLAEATARMV-----EAARQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLP 930 (2347)
Q Consensus 856 d~~~~~~Ll~aAk~La~ats~LV-----~aaK~~a~~p~d~~~q~~L~~AAe~L~~At~~~i~~~~~~~l~~~~~~~~lp 930 (2347)
||.+.+++..+.+.|.+...+|+ .+++.++.||.|+.....|+++++.|-++.. .|+.++.--..|++ ++
T Consensus 484 dp~y~~~V~~av~~L~~~v~P~~~~~~~~a~~~~a~~p~~~~~~~~f~das~~l~~~V~-~VR~Av~~~~~p~e----l~ 558 (832)
T 4igg_A 484 PGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIR-DIRKAVLMIRTPEE----LD 558 (832)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSSSCCSCHHHHHHHHHHHHHHHH-HHHHHHHSSCCC--------
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHH-HHHHHHccCCCchh----hc
Confidence 99999999999999999877777 4568889999999999999999999876622 22222211001110 00
Q ss_pred chHHHHHHHHHHHHHhhh----------------hccCCCCCCC-CchhHHHHHHHHHHHHHHHH---------------
Q psy15599 931 GQQEIEEITEIIESTYEQ----------------IHTDDFPRST-KPIGRLQQELSSAATGLSET--------------- 978 (2347)
Q Consensus 931 gq~~l~~Aie~i~~a~~~----------------l~~~~~p~~~-~~~~~~q~~L~~aA~~L~~a--------------- 978 (2347)
..+++. +.+...... ..++.+|.+. ..+.+.-.....++.+|.+.
T Consensus 559 -~~~~~~--e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~eek~ki~~~~~~~~~~~~~l~~E~~kWd~~~n~iv~~a 635 (832)
T 4igg_A 559 -DSDFET--EDFDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLA 635 (832)
T ss_dssp -----------------------------CCSHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHH
T ss_pred -ccccch--hhcccccCCCCCCCCCCCCCCcchhhcccCCCchhhhHHHHHHHHHHHHHhhHHHHHHHHhccCCcHHHHH
Confidence 011110 000000000 0000111100 01111112333444444443
Q ss_pred ------HHHHHhhcC--C----CCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhh--hHHHHHHHH
Q psy15599 979 ------TNEVISSVK--N----PANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVST--SSSKFLSTA 1044 (2347)
Q Consensus 979 ------~~~lv~~~~--~----~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~--~s~kLl~~a 1044 (2347)
+.++....| + ..+|+.++|.|++...++...+++++.+|+|+..+.+|+.++++|.. +.++++..+
T Consensus 636 k~m~~~m~~m~~~~rg~g~lk~~~dli~~Ak~ia~~~~~~~~~~~~~a~~c~d~~~k~~ll~~~~~i~~~~~QL~i~~~v 715 (832)
T 4igg_A 636 KQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKV 715 (832)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 344444443 2 25899999999999999999999999999999999999999999954 566666666
Q ss_pred HhhcCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15599 1045 RSAALDPSA------SNSKSQLSAAARNVADSINNLLNICTS 1080 (2347)
Q Consensus 1045 Ka~~~~p~d------~~a~~qL~~aAr~l~~sin~Lv~a~~~ 1080 (2347)
|+.+.+.+. ....++|-++||||+.+|.++|.+|+.
T Consensus 716 ka~~~~~~~~~~~s~~d~~~~li~~aknlm~~v~~~v~~~~~ 757 (832)
T 4igg_A 716 KAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYV 757 (832)
T ss_dssp TTTSSSSCCSSCEEHHHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred cccccCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676655442 245559999999999999999998854
No 32
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=99.83 E-value=4.3e-19 Score=213.16 Aligned_cols=297 Identities=19% Similarity=0.294 Sum_probs=229.6
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCchhhhhhHHHHHHHHHHHHhhhhHHHHHHHhhHHHHhhhH
Q psy15599 1379 VAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIP-HYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFSV 1457 (2347)
Q Consensus 1379 ~aPGQkECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~-~~~~~s~~~~~e~~~~~~~~l~~~i~~l~~A~~~~~e~l~~~v 1457 (2347)
.+|||+|||+|||.|+.+...|+. .+.| .++
T Consensus 6 ~a~gq~ecd~Al~~i~~~~~~L~~--------~~~Pv~~~---------------------------------------- 37 (309)
T 2x0c_A 6 TKHGQKECDNALRQLETVRELLEN--------PVQPINDM---------------------------------------- 37 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTC--------CCSCSSSC----------------------------------------
T ss_pred cCCChHHHHHHHHHHHHHHHHhhc--------ccCCCCCC----------------------------------------
Confidence 579999999999999887766665 3333 222
Q ss_pred HHHhhhhchhhhhHHHhhhcccChhhhhHHHHhhhHHHHHHHHHHHHHHhhCCCCCCCccccchHHHHHHHHHHHHHHHh
Q psy15599 1458 NQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITS 1537 (2347)
Q Consensus 1458 ~~~~~~~~~l~~~a~~aas~~~~~~~q~~~~~~sK~v~es~~~L~~~aK~~~gnp~~~~~~~~~~~a~~~~~eav~~l~~ 1537 (2347)
+||+++.. ++..+|.|+++|.+|..++|.. .++.+.++++.+.++++.|++
T Consensus 38 ----t~~~c~~~-----------------l~~~sK~Lg~~m~~l~~~a~~~--------~~~~~g~a~~~~a~al~~Lte 88 (309)
T 2x0c_A 38 ----SYFGCLDS-----------------VMENSKVLGEAMTGISQNAKNG--------NLPEFGDAIATASKALCGFTE 88 (309)
T ss_dssp ----CHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHH-----------------HHHHhhHHHHHHHHHHHHHHcC--------ChhhhhHHHHHHHHHHHHHHH
Confidence 78888886 9999999999999999999983 244699999999999999999
Q ss_pred hhhhhcccccccccccccccccCCCCCCCCCcccccccccchhcccccCCCCCcccccchhhhHHHHHHHHhhcCCCCCC
Q psy15599 1538 SLDHFTGVVNTFVDSITKSMQQIPDPNQPNSHYASDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSITKSMQQIPDPNQ 1617 (2347)
Q Consensus 1538 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~d~I~~~~~~l~~~~~ 1617 (2347)
.+.+.+|+||+++|.+++|++++||+.+ |.+..+.|..+|..+.+|.
T Consensus 89 aa~~aaylvgVs~p~s~~g~~glvD~~~--------------------------------~~ra~~~i~~ac~~~~~~~- 135 (309)
T 2x0c_A 89 AAAQAAYLVGVSDPNSQAGQQGLVEPTQ--------------------------------FARANQAIQMACQSLGEPG- 135 (309)
T ss_dssp HHHHHHHHHHHHSTTCBCCBCCSSCSHH--------------------------------HHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHhhhhhccccccccCccccchHHH--------------------------------HHHHHHHHHHHHhccCCcc-
Confidence 9999999999999999999999999976 7889999999998777751
Q ss_pred CCCccccccccchhHhHHHHHHHHHHHHHHhHHhhhhcccCchhhhhhHHHHHHHHhhhhhHHhhhhhhCCChhhhhHHH
Q psy15599 1618 PSSHYASDSVDSYVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLC 1697 (2347)
Q Consensus 1618 ~~~~~~~~~~~s~~~~qt~m~~~ak~ia~~~~~~~~~a~~~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~~~~~~~~i~ 1697 (2347)
.-|.+++.+++.|+ .+-..||..++.++..+.||..+.+|.
T Consensus 136 --------------~~q~~vL~~A~~va-------------------------~~t~~L~~~cr~as~~~~n~~~k~ql~ 176 (309)
T 2x0c_A 136 --------------CTQAQVLSAATIVA-------------------------KHTSALCNSCRLASARTANPTAKRQFV 176 (309)
T ss_dssp --------------CCHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred --------------ccHHHHHHHHHHHH-------------------------HhhHHHHHHHHHHhcCcCCchHHHHHH
Confidence 12445555555555 445567778888888888888888888
Q ss_pred HHHhhHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhhhhhhcHHHHHHH
Q psy15599 1698 GAVHDLGTACINTVTMAATCQTSGDDYTHREFADTNRVLAEKVSQVLYALQAGSRGTQACINAASTVSGIIGDLDTTIMF 1777 (2347)
Q Consensus 1698 ~~~~~l~~s~~~lv~aa~~~~~~~d~~t~~~l~~~ar~v~e~v~~l~aal~~g~~G~qac~~a~~~vsgii~dLd~ti~f 1777 (2347)
..+|++..++..+|...|..-....+..+.+
T Consensus 177 ~~ak~va~st~~lV~~iK~ld~~~~~~~r~~------------------------------------------------- 207 (309)
T 2x0c_A 177 QSAKEVANSTANLVKTIKALDGDFTEENRAQ------------------------------------------------- 207 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchhHHH-------------------------------------------------
Confidence 8888888888888865544432222233333
Q ss_pred HhcCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCHHHH
Q psy15599 1778 ATAGTLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQ 1857 (2347)
Q Consensus 1778 A~ag~l~~~~~~~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~aa~~~~~~~~~La~~~k~gAas~~~~~~~~q 1857 (2347)
+...++.|.+-+.+||.-+. +|| ++.. ++.+++++-..|
T Consensus 208 ---------------------~~~aa~~L~~Av~~Lv~~A~-spe-fa~~------------------~~~is~~~~~aq 246 (309)
T 2x0c_A 208 ---------------------CRAATAPLLEAVDNLSAFAS-NPE-FSSV------------------PAQISPEGRAAM 246 (309)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHT-SSS-SSCB------------------CCBCCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHhc-Chh-hhhc------------------ccccChhhHHHH
Confidence 44444444444444444443 331 2211 114444356679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1858 VLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKA 1914 (2347)
Q Consensus 1858 ~~l~~a~kdv~~a~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~tv~~ 1914 (2347)
.-|+.+.|.|..++..||..+|....+|.+.+.+..|-.++|.|.+.|..|+..+..
T Consensus 247 ~~il~a~r~v~~~s~~ll~taK~la~~P~dp~~~~~La~~ar~VSdsI~~Li~ai~~ 303 (309)
T 2x0c_A 247 EPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRD 303 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999875
No 33
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=99.82 E-value=4.9e-20 Score=192.06 Aligned_cols=119 Identities=44% Similarity=0.602 Sum_probs=108.1
Q ss_pred HHhhhcCCCCCcc--hHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q psy15599 792 NHIKVTTTEPAQD--VETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKN 869 (2347)
Q Consensus 792 ~~~k~~~~~~~~~--~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~ 869 (2347)
+|+|.....+.+. .++.|++|+.++++|+.++|+|++||+++|.|++++++||+.+|.+|++++||+++++|+++|+.
T Consensus 3 ~h~k~~~~~~~~~~~~~~~~~~il~~t~~l~~s~~~p~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~ 82 (131)
T 2l7a_A 3 DPFTAHATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKI 82 (131)
T ss_dssp CCBTSSSBCCCCCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cHHHhhccCCCcchhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455444433333 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcch
Q psy15599 870 LAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATP 910 (2347)
Q Consensus 870 La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~At~~ 910 (2347)
|+++|++||+++|+|+.||+|++.|++|++|+++|+.+|..
T Consensus 83 La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~at~~ 123 (131)
T 2l7a_A 83 LADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATNA 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988543
No 34
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=99.77 E-value=1.6e-17 Score=196.91 Aligned_cols=220 Identities=16% Similarity=0.213 Sum_probs=164.3
Q ss_pred CCChhHhHHHHHHhHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCC-CChhhhHHHHHHHHHH
Q psy15599 640 HSNQPRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVAST-LPPNQQTSVITSATKC 718 (2347)
Q Consensus 640 ~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~-~~~~~q~~li~aA~~~ 718 (2347)
+...+++.|++||.. | ++.. +.+ ....|++.+..++ ..++.++.. +++..++.++.++++|
T Consensus 20 ~~~~pl~~L~~AA~~-g----~~~~-~~~-~~~~f~~~~~~l~-----------~~aklva~~s~~~~~~~~v~~aa~~~ 81 (256)
T 1h6g_A 20 ETNVPLLVLIEAAKN-G----NEKE-VKE-YAQVFREHANKLI-----------EVANLACSISNNEEGVKLVRMSASQL 81 (256)
T ss_dssp CCHHHHHHHHHHHHT-T----CHHH-HHH-HHHHHHHHHHHHH-----------HHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHh-C----cHHH-HHH-HHHHHHHHHHHHH-----------HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 355677778777766 2 2222 211 2334555444443 333333333 3477888888888888
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy15599 719 ALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTT 798 (2347)
Q Consensus 719 a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~ 798 (2347)
...+.|+|.|+|++++++++|.|+|+|....++....++.|..+++..+..+. |..++ -+.+..+.
T Consensus 82 ~~l~pQvv~aar~l~~~p~s~~a~E~l~~~~~~w~~~v~~L~~~vd~~~~~~~----fl~as------e~~i~~~~---- 147 (256)
T 1h6g_A 82 EALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDD----FLAVS------ENHILEDV---- 147 (256)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH----HHHHH------HHHHHHHH----
T ss_pred HHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH----HHHHH------HHHHHHHH----
Confidence 88888888888888888888888888888888888888888888887776532 22222 11111111
Q ss_pred CCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHH-HHHH
Q psy15599 799 TEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEA-TARM 877 (2347)
Q Consensus 799 ~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~a-ts~L 877 (2347)
+.|+.++ +.|+|++|+++|+.|++.+++|++.+|+++++.+||.++++|+.+++.|+++ |++|
T Consensus 148 --------~~c~~al--------~~~d~~~~~~~a~~i~~~a~rv~~v~k~e~d~~ed~~~~~~v~~a~~~L~~a~~p~m 211 (256)
T 1h6g_A 148 --------NKCVIAL--------QEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRF 211 (256)
T ss_dssp --------HHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred --------HHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhchHHH
Confidence 1122211 5689999999999999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHh----hcCCCCHHHHHHHHHHHHHHHhh
Q psy15599 878 VEAARQC----ASHPQDIMKQEALVTTVEELRQA 907 (2347)
Q Consensus 878 V~aaK~~----a~~p~d~~~q~~L~~AAe~L~~A 907 (2347)
|+++|.+ +.||+|+..++.|+++++.|+++
T Consensus 212 v~~ak~~~~~~a~np~d~~~~~~~~~a~~~L~~~ 245 (256)
T 1h6g_A 212 TEQVEAAVEALSSDPAQPMDENEFIDASRLVYDG 245 (256)
T ss_dssp HHHHHHHHHHHTSSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999987
No 35
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-19 Score=188.76 Aligned_cols=126 Identities=54% Similarity=0.913 Sum_probs=106.2
Q ss_pred ccccccccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhh
Q psy15599 79 DELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEK 158 (2347)
Q Consensus 79 ~~L~~~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~ 158 (2347)
..|+|+|+||+++|.||||+.+++.||++.||++++..||+++||.++++|+|.....+..++. ..|++ .+.+...
T Consensus 3 ~~l~f~~k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~--~~~~l--~~~~~~~ 78 (128)
T 2kc2_A 3 GLVPRGSHMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDE--GTGTL--RKDKTLL 78 (128)
T ss_dssp CCCSCSSEEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCC--CSSCC--SSSSSCS
T ss_pred ceeEeccCCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccccccccccccc--Cchhh--ccccccc
Confidence 4689999999999999999999999999999999999999999999999999998766543322 12433 3323333
Q ss_pred hhhHHHHHHHhhhccCccccccccchhhhhcCCCCCceEEEEEEeecCCC
Q psy15599 159 ERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDG 208 (2347)
Q Consensus 159 ~~~~k~~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKff~~d~ 208 (2347)
....++++++++|+.++..+|||++++|+|||+.++.+|+|||||||+|.
T Consensus 79 ~~~~~~~~~k~kL~~dd~~~WLD~srtL~EQGI~e~~tllLRrKfffsd~ 128 (128)
T 2kc2_A 79 RDEKKMEKLKQKLHTDDELNWLDHGRTLREQGVEEHETLLLRRKFFYSDQ 128 (128)
T ss_dssp CCSCCSCSSCCSCCCSSSEEEECSSSCHHHHTCCTTSEEEEEESSCCCCC
T ss_pred cchhHHHHHHHHhcccCCCCcccCCCcHHHcCCCCCCEEEEEEEEeccCC
Confidence 34556777899999999999999999999999999999999999999873
No 36
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=181.28 Aligned_cols=150 Identities=22% Similarity=0.310 Sum_probs=133.0
Q ss_pred HHhhhhhhhcHHHHHHHHhc----CCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q psy15599 1761 ASTVSGIIGDLDTTIMFATA----GTLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIV 1836 (2347)
Q Consensus 1761 ~~~vsgii~dLd~ti~fA~a----g~l~~~~~~~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~aa~~~~~~~~ 1836 (2347)
.++..|++++|..+|-.|.+ |.+ ++. .++|+|||++|++.+|+|+...++||+++.++|++|+.++.++++.|.
T Consensus 9 ~~se~g~v~glvd~I~~ai~~l~~~~~-~~~-~~sf~dYQt~m~~~~K~iA~~aq~mv~k~~~~p~eL~~la~~it~~y~ 86 (165)
T 2kvp_A 9 AASAAGVVGGMVDSITQAINQLDEGPM-GDP-EGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYG 86 (165)
T ss_dssp SCSSCSSSCSHHHHHHHHHHHHHHCCC-CCC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHHHHHHHHhhcccC-CCC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 33444666666666665553 444 333 359999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1837 QLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKA 1914 (2347)
Q Consensus 1837 ~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~a~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~tv~~ 1914 (2347)
+|+..+|.+++.++ |++.+..|++.|++|+.+|.+||++++..++.|.|..++++|.+++|.+.|+|++||.+|++
T Consensus 87 ~La~~~~~A~~t~~--~~~i~~~Ik~~Vq~LG~sc~~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsekVs~vLaALqa 162 (165)
T 2kvp_A 87 RLASQAKPAAVAAE--NEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQA 162 (165)
T ss_dssp HHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988777765 99999999999999999999999999999999998888999999999999999999999997
No 37
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=168.05 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=76.2
Q ss_pred CcceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhhhccCCc
Q psy15599 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYYILRNGD 79 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y~l~~~~ 79 (2347)
+++|+|+|+|++.+..+++|+.|+.||+++|++|+|++... .+|+|||||| |+|++||.+ +++||+|+++++.
T Consensus 22 d~SWeL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~--~dWSDhaLWW----p~k~~WLlkt~~tLDk~giqADa 95 (112)
T 2lgx_A 22 DGTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVK--KDWSDHALWW----EKKRTWLLKTHWTLDKYGIQADA 95 (112)
T ss_dssp SSCCCEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSC--CCSSSSBEEE----TTTTEEECCTTSCHHHHTCCTTC
T ss_pred cCcEEEEEEEecCCccEEEEEeeccccccchhhhhhhhccc--ccchHhhhhh----hhhchhhhcchhhHhhhceeccc
Confidence 57999999999999999999999999999999999999877 8999999999 999999987 9999999999999
Q ss_pred cccccccceeEEEEeCC
Q psy15599 80 ELEYRRKMRTLKVRMLD 96 (2347)
Q Consensus 80 ~L~~~~~~r~lkV~L~D 96 (2347)
.|+|+|+|++++|+|||
T Consensus 96 ~L~ftp~hk~lrvqLPd 112 (112)
T 2lgx_A 96 KLQFTPQHKLLRLQLPN 112 (112)
T ss_dssp BBCBBC-----------
T ss_pred cceecCCCCccEeeCCC
Confidence 99999999999999997
No 38
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=99.70 E-value=1e-16 Score=168.37 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=118.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCHHHHHHHHHHHHHHHH
Q psy15599 1790 DTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTT 1869 (2347)
Q Consensus 1790 ~~f~d~~~~i~~~ak~lv~~~~~lv~~~~~~qe~La~aa~~~~~~~~~La~~~k~gAas~~~~~~~~q~~l~~a~kdv~~ 1869 (2347)
++|+|||++|++.+|+|+...++||+++.++|++|+.++.++++.|.+|+..+|.+++.+. +++.+..|+++|++|+.
T Consensus 12 ~sfvdYQt~m~~~~K~iA~~aqemv~ks~~~p~eL~~la~~lt~~Y~~La~~~~~A~~~~~--~~~v~~~Ir~~Vq~LG~ 89 (137)
T 2b0h_A 12 GSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAE--NEEIGAHIKHRVQELGH 89 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHhH
Confidence 4999999999999999999999999999999999999999999999999999977777765 99999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1870 ALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKA 1914 (2347)
Q Consensus 1870 a~~~li~atk~a~g~p~~~~~~~~L~~~a~~~~~~v~~ll~tv~~ 1914 (2347)
+|.+||++++..++.|.|..++++|.+++|.+.|+|++||.+|++
T Consensus 90 ac~~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsEkVs~vLAALqa 134 (137)
T 2b0h_A 90 GCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQA 134 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888999999999999999999999997
No 39
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=99.70 E-value=6.4e-17 Score=175.59 Aligned_cols=157 Identities=20% Similarity=0.344 Sum_probs=135.9
Q ss_pred cCCChhhhHHHHHHHHhhccccC--------CCCCCCCcccHHHHHHHHHHhhhhHHHHHHHHHHHhhccCcchhhhhhh
Q psy15599 1081 ALPGQKECDNAIRNIQSMKPFLD--------KPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVN 1152 (2347)
Q Consensus 1081 aapg~~E~D~Al~~I~~l~~~L~--------~~~~Pv~~~t~~~c~~~l~~~sK~lg~amaql~~~a~~~~~~~~g~s~~ 1152 (2347)
.+||+.|+|+|++.|+++...|. +.++|+|++++++|.+.|+.++|+||++|+||++.+++||+.|.|.+++
T Consensus 4 e~Cg~~eld~Ale~V~~L~~eL~~~~~aa~~g~L~plPget~e~~~~~L~atsk~vgs~~aQLltaa~qgne~y~g~aar 83 (168)
T 2l7n_A 4 PFTGPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKLLGEIAQGNENYAGIAAR 83 (168)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTSSCCBSCCHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhhhhHHHH
Confidence 48999999999999999999886 7889999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhHhhhhhhhhhccccccccccCCcchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhhHHHH
Q psy15599 1153 NVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCN 1232 (2347)
Q Consensus 1153 ~~a~al~~L~eaaa~aa~~vavsd~~s~~~~~~liD~~~~~ra~~~I~~a~~~l~~~~~~~~q~l~~a~~ia~~t~~l~~ 1232 (2347)
+++.+++.|+.++. .|+.+
T Consensus 84 ~~A~aL~~lt~avr----gvaat--------------------------------------------------------- 102 (168)
T 2l7n_A 84 DVAGGLRSLAQAAR----GVAAL--------------------------------------------------------- 102 (168)
T ss_dssp HHHHHHHHHHHHHH----HHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH----Hhhhc---------------------------------------------------------
Confidence 99999999984222 11111
Q ss_pred HHHhhhcCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhhhhccCchhhhhcccc
Q psy15599 1233 ACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSH 1312 (2347)
Q Consensus 1233 ~c~~as~~~~n~~~~~~~~~~ak~v~~at~~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l~~~as~~efa~~~~~ 1312 (2347)
+.
T Consensus 103 --------t~---------------------------------------------------------------------- 104 (168)
T 2l7n_A 103 --------TS---------------------------------------------------------------------- 104 (168)
T ss_dssp --------CC----------------------------------------------------------------------
T ss_pred --------CC----------------------------------------------------------------------
Confidence 11
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCCCcH
Q psy15599 1313 FGDSTLTAQEPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQK 1384 (2347)
Q Consensus 1313 is~~~~~~q~~iv~~~k~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aPGQk 1384 (2347)
++..|..||+.++.|...|..||..+|....+|.||+..++|...+|.|+.+.+++|+.+ ||||
T Consensus 105 ----d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak~vs~aL~~~v~cL----PGqr 168 (168)
T 2l7n_A 105 ----DPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSCL----PGQR 168 (168)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHHHHHHHHHHHHHSS----CCCC
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhcC----CCCC
Confidence 123566677777778888888899999999999999999999999999999999999855 9986
No 40
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=99.63 E-value=2.1e-15 Score=162.73 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=126.2
Q ss_pred CCChhhhHHHHHHHHhhccccCCCCCCCCcccHHHHHHHHHHhhhhHHHHHHHHHHHhhccCcchhhhhhhhhHHhhhhh
Q psy15599 1082 LPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGL 1161 (2347)
Q Consensus 1082 apg~~E~D~Al~~I~~l~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~lg~amaql~~~a~~~~~~~~g~s~~~~a~al~~L 1161 (2347)
.|||+|+|+|++.|++....|.....|.++++|.++-.+|......|..+..+|+..++ |.+..++.+++..+.+.+.|
T Consensus 4 LPGqrdvd~Ai~~I~~as~~l~~~~~~~~~~~~~~~Q~eL~~aA~~Ln~A~~~vv~aar-gsp~~La~as~~f~~~~~~l 82 (158)
T 2l10_A 4 PFTQRDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASR-GTPQDLARASGRFGQDFSTF 82 (158)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTTTCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998888865556777779999999999999999999999999876 45666666666665555555
Q ss_pred hhhHhhhhhhhhhccccccccccCCcchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhhhcCC
Q psy15599 1162 CEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKT 1241 (2347)
Q Consensus 1162 ~eaaa~aa~~vavsd~~s~~~~~~liD~~~~~ra~~~I~~a~~~l~~~~~~~~q~l~~a~~ia~~t~~l~~~c~~as~~~ 1241 (2347)
.++.
T Consensus 83 ~~ag---------------------------------------------------------------------------- 86 (158)
T 2l10_A 83 LEAG---------------------------------------------------------------------------- 86 (158)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4210
Q ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhhhhccCchhhhhcccccCchhhhhH
Q psy15599 1242 TNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQ 1321 (2347)
Q Consensus 1242 ~n~~~~~~~~~~ak~v~~at~~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l~~~as~~efa~~~~~is~~~~~~q 1321 (2347)
=.+++.. ...+.|
T Consensus 87 ---------------------------~~mag~~----------------------------------------~~~~~r 99 (158)
T 2l10_A 87 ---------------------------VEMAGQA----------------------------------------PSQEDR 99 (158)
T ss_dssp ---------------------------HHHHTTC----------------------------------------SSHHHH
T ss_pred ---------------------------HHHHHcC----------------------------------------CCHhHH
Confidence 0011000 123458
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcC
Q psy15599 1322 EPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVA 1380 (2347)
Q Consensus 1322 ~~iv~~~k~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~a 1380 (2347)
.+||+++|+|+++|++||.++|.+++||++||++|+|+.++|+|+|+||+||+.|+..|
T Consensus 100 ~~iv~~L~~vs~~s~~LL~~ak~~~~dp~~pn~~~~L~sAaR~VtesIN~Lv~~ct~~a 158 (158)
T 2l10_A 100 AQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLITMCTQQA 158 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999998753
No 41
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=99.61 E-value=7.1e-16 Score=148.55 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=77.5
Q ss_pred CcceEEEEEEecCC----eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhhhc
Q psy15599 1 MATLSLKICIVDRN----VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYYIL 75 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~----~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y~l 75 (2347)
+++|+|+|+|++.+ ..+++|+.|+.||+++|++|+|++... .+|+|||||| |+|++||.+ +++|++|++
T Consensus 15 d~SWeL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~--~dWSDhaLWW----~~k~~WLlkt~~tLDkygi 88 (102)
T 2kmc_A 15 SASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA--QDWSDYALWW----EQKRCWLLKTHWTLDKCGV 88 (102)
T ss_dssp CCCEEEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS--SCCSSEEEEE----TTTTEEECCTTSBHHHHTC
T ss_pred cCcEEEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc--cchHHhhhhh----hhhchhhhhhhhhhhhhce
Confidence 57999999999954 779999999999999999999999877 7999999999 999999987 999999999
Q ss_pred cCCcccccccccee
Q psy15599 76 RNGDELEYRRKMRT 89 (2347)
Q Consensus 76 ~~~~~L~~~~~~r~ 89 (2347)
+++..|+|+|+|++
T Consensus 89 qADa~L~ftp~hk~ 102 (102)
T 2kmc_A 89 QADANLLFTPQHKM 102 (102)
T ss_dssp CTTSCEEEEECCCC
T ss_pred eeeeeeeccCCCCC
Confidence 99999999999873
No 42
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=99.53 E-value=7e-08 Score=129.93 Aligned_cols=724 Identities=12% Similarity=0.141 Sum_probs=396.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHH
Q psy15599 705 PNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVT 784 (2347)
Q Consensus 705 ~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~ 784 (2347)
|.+++.+-.+...+-.+...|...+........+..-++.||.+|+.+=.+|..|+=.++.+ ...+|..+++.|.
T Consensus 3 ~~Lk~eM~~A~~~v~~ag~~l~~aa~~l~~DP~s~~~R~~lV~aAR~LLs~vTrLLllaD~~-----~VrkIi~~~~~Vl 77 (832)
T 4igg_A 3 QFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMA-----DVYKLLVQLKVVE 77 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666777777777766666666544433 4455555555555
Q ss_pred HHHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Q psy15599 785 KTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLL 864 (2347)
Q Consensus 785 ~al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll 864 (2347)
+.++.| ....+-.+++...+.++..+..|...+..-...-.|+..+++|.
T Consensus 78 ~~L~~l------------------------------e~v~s~~eLv~~f~~f~~~m~eL~~lt~~Rq~dLk~~~~R~~L~ 127 (832)
T 4igg_A 78 DGILKL------------------------------RNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMA 127 (832)
T ss_dssp HHHHHH------------------------------HTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHH------------------------------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 555444 23345567777788888877777777776666667898899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcchHHHHHhhhhccccccccCCcchHHHHHHHHHHHH
Q psy15599 865 AAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIES 944 (2347)
Q Consensus 865 ~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~At~~~i~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~ 944 (2347)
.+=..|...++-|+-++|.|..+|+.++.+..=.-....+ +.|++.|..
T Consensus 128 aAr~~Lk~~spmLlta~Kt~lrhp~~~~A~~nRd~v~~qm-------------------------------~~al~~Ii~ 176 (832)
T 4igg_A 128 AARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQL-------------------------------QQAVTGISN 176 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH-------------------------------HHHHHHHHH
Confidence 9999999999999999999999999976655433333333 334444444
Q ss_pred HhhhhccCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHhhHHHHHHHHHHHHHHHHHhh-cCCCHHH
Q psy15599 945 TYEQIHTDD-FPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIIS-TTESRET 1022 (2347)
Q Consensus 945 a~~~l~~~~-~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~~~~~L~~~sk~~a~~~~~L~~~~~~~a~-~~~d~~~ 1022 (2347)
..+.-..+. .+..+. .+ ..|..+-..+ -+.++..+.+... ......+...+..++..+..++. .|+.+..
T Consensus 177 vlq~~~~~e~~~~~~~-~g---~~l~~al~~~---~~~i~~~p~~~~e-~~~r~~L~~~Le~iv~~a~~~aDs~~t~~~~ 248 (832)
T 4igg_A 177 AAQATASDDASQHQGG-GG---GELAYALNNF---DKQIIVDPLSFSE-ERFRPSLEERLESIISGAALMADSSCTRDDR 248 (832)
T ss_dssp HHTCCSCSTTTTCCSS-CS---CHHHHHHHHH---HHHHHSCCCSSCC-SSHHHHHHHHHHHHHHHHHHHHSSTTSCHHH
T ss_pred HHhcCCCCcccccccc-hH---HHHHHHHHHH---HHHHhcCcccccc-chhhHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 332111111 010001 01 0122222222 2222222111000 01123566778888888888887 5889999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHhhcccc
Q psy15599 1023 QTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQSMKPFL 1102 (2347)
Q Consensus 1023 q~~li~~~~~i~~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a~~~aapg~~E~D~Al~~I~~l~~~L 1102 (2347)
|..++..|+++.+.-..|+.. ...+++...-...|..++.++...+.+|.....++ +++.|
T Consensus 249 Re~Iv~~C~~vrq~L~dLl~~---~~~~~g~~~~s~~l~~ai~~l~~k~~dL~r~L~~A---------vvdqv------- 309 (832)
T 4igg_A 249 RERIVAECNAVRQALQDLLSE---YMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKA---------VMDHV------- 309 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhccccccCChHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-------
Confidence 999999999997766666652 22334332223445455555555555555443222 00000
Q ss_pred CCCCCCCCcccHHHHHHHHHHhhhhHHHHHHHHHHHhhccCcchhhhhhhhhHHhhhhhhhhHhhhhhhhhhcccccccc
Q psy15599 1103 DKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTA 1182 (2347)
Q Consensus 1103 ~~~~~Pv~~~t~~~c~~~l~~~sK~lg~amaql~~~a~~~~~~~~g~s~~~~a~al~~L~eaaa~aa~~vavsd~~s~~~ 1182 (2347)
....-++...|..|++++.. |
T Consensus 310 ---------------------------------------------sD~F~dt~~pL~~Li~Aa~~--------------g 330 (832)
T 4igg_A 310 ---------------------------------------------SDSFLETNVPLLVLIEAAKN--------------G 330 (832)
T ss_dssp ---------------------------------------------HHHTSSSSHHHHHHHHHHHT--------------T
T ss_pred ---------------------------------------------HHHHHhcCchHHHHHHHHHc--------------C
Confidence 01111122223333321110 0
Q ss_pred ccCCcchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhhhcCCCChhHhHHHHHHHHHHHHHHH
Q psy15599 1183 NKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA 1262 (2347)
Q Consensus 1183 ~~~liD~~~~~ra~~~I~~a~~~l~~~~~~~~q~l~~a~~ia~~t~~l~~~c~~as~~~~n~~~~~~~~~~ak~v~~at~ 1262 (2347)
+ ...+-..+...-.|+..+...|+++..-..|+...+.+..++..
T Consensus 331 ~-----------------------------ee~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~------ 375 (832)
T 4igg_A 331 N-----------------------------EKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQ------ 375 (832)
T ss_dssp C-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------
T ss_pred c-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH------
Confidence 0 01111223333345555555555443333343332222222111
Q ss_pred HHHHHHHHhhhccCchhhhHhhhhcchHHHHHhhhhhccCchhhhhcccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1263 NLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAIIESSCSMIKTA 1342 (2347)
Q Consensus 1263 ~Lv~~ik~~~~~~~~~~~~~~~~~~~~L~~a~~~l~~~as~~efa~~~~~is~~~~~~q~~iv~~~k~i~~ss~~ll~tA 1342 (2347)
| -.-..++|.+|
T Consensus 376 ----------------------------------l----------------------------------e~L~PQVI~Aa 387 (832)
T 4igg_A 376 ----------------------------------L----------------------------------EALCPQVINAA 387 (832)
T ss_dssp ----------------------------------H----------------------------------HHHHHHHHHHH
T ss_pred ----------------------------------H----------------------------------HHHhHHHHHHH
Confidence 1 11136778888
Q ss_pred HHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCCchhh
Q psy15599 1343 KSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQKECDQAIEAISS-RLRELDEVAMLAVSQGQIPHYNSASL 1421 (2347)
Q Consensus 1343 k~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~aPGQkECd~Ai~~l~~-~i~~ld~~s~~~~~~~l~~~~~~~s~ 1421 (2347)
+.|+.+|.+.-++..|-.-.+.=.+.++.|.+++.+..-= ++=|..-+. ...+++....+.
T Consensus 388 r~L~~~P~Sk~A~Enle~f~~~W~~~v~~L~~avDdi~di----~dFL~vSe~~i~~dv~~c~~Al-------------- 449 (832)
T 4igg_A 388 LALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSI----DDFLAVSENHILEDVNKCVIAL-------------- 449 (832)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 9999999998888888888888888888887766543221 111111111 122333322211
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhhHHHHhhhHHHHhhhhchhhhhHHHhhhcccChhhhhHHHHhhhHHHHHHHHH
Q psy15599 1422 QMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQV 1501 (2347)
Q Consensus 1422 ~~~~e~~~~~~~~l~~~i~~l~~A~~~~~e~l~~~v~~~~~~~~~l~~~a~~aas~~~~~~~q~~~~~~sK~v~es~~~L 1501 (2347)
..++++.+-..+..+..-..-.+.-+..=..+..+|.-...+.+.++.|.+...-+
T Consensus 450 ------------------------~~~~~~~~~~~A~~I~gRa~rV~~V~~~Emdn~edp~y~~~V~~av~~L~~~v~P~ 505 (832)
T 4igg_A 450 ------------------------QEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPR 505 (832)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHTHHHH
T ss_pred ------------------------HccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhHH
Confidence 12222222223333322222333333334455566666666777777777765555
Q ss_pred H-----HHHHhhCCCCCCCccccchHHHHHHHHHHHHHHHhhhhhhccccccccc-----cc--ccccccCCCCCCCCCc
Q psy15599 1502 L-----HLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSLDHFTGVVNTFVD-----SI--TKSMQQIPDPNQPNSH 1569 (2347)
Q Consensus 1502 ~-----~~aK~~~gnp~~~~~~~~~~~a~~~~~eav~~l~~~~~~~a~~~~~~~~-----~~--~~~~~~~~~~~~~~~~ 1569 (2347)
+ .++|....||......+.|.++.+.+.++|.++...+.... -|.-..+ +. ...+++...+ .|.+.
T Consensus 506 ~~~~~~~a~~~~a~~p~~~~~~~~f~das~~l~~~V~~VR~Av~~~~-~p~el~~~~~~~e~~~~~s~~~~~~~-~~~~~ 583 (832)
T 4igg_A 506 FTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIR-TPEELDDSDFETEDFDVRSRTSVQTE-DDQLI 583 (832)
T ss_dssp HHHHHHHHHHHHTTSSSCCSCHHHHHHHHHHHHHHHHHHHHHHHSSC-CC------------------------------
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHccCC-CchhhcccccchhhcccccCCCCCCC-CCCCC
Confidence 4 44577788888777777788888888888888877753111 0000000 00 0000000000 00000
Q ss_pred ccccccccchhcccccCCCCCcccccchhhhHHHHHHHHhhcCCCCCCCCCccccccccchhHhHHHHHHHHHHHHHHhH
Q psy15599 1570 YASDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVGSSKEIARISQ 1649 (2347)
Q Consensus 1570 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~d~I~~~~~~l~~~~~~~~~~~~~~~~s~~~~qt~m~~~ak~ia~~~~ 1649 (2347)
.+ .+.+.....+ .+++.+. ....++.++..-.+++. + ...+-+.-..++..||.|+..+-
T Consensus 584 --~~--~~~~~~~~~~-p~eek~k----i~~~~~~~~~~~~~l~~----------E-~~kWd~~~n~iv~~ak~m~~~m~ 643 (832)
T 4igg_A 584 --AG--QSARAIMAQL-PQEQKAK----IAEQVASFQEEKSKLDA----------E-VSKWDDSGNDIIVLAKQMCMIMM 643 (832)
T ss_dssp ---C--CSHHHHHHTC-CHHHHHH----HHHHHHHHHHHHHHHHH----------H-HTTCSCSSSHHHHHHHHHHHHHH
T ss_pred --CC--cchhhcccCC-CchhhhH----HHHHHHHHHHHHhhHHH----------H-HHHHhccCCcHHHHHHHHHHHHH
Confidence 00 0011111111 0000000 00011112111111111 0 00112223489999999999999
Q ss_pred HhhhhcccC-----chhhhhhHHHHHHHHhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhccCC---C
Q psy15599 1650 EMMTKSWSD-----VKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACINTVTMAATCQTS---G 1721 (2347)
Q Consensus 1650 ~~~~~a~~~-----~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~~~~---~ 1721 (2347)
.|.--++.+ ..+|-+.++.|++.-..+..-++.-+..++|...+..|+...+.+..-|.||...++..... .
T Consensus 644 ~m~~~~rg~g~lk~~~dli~~Ak~ia~~~~~~~~~~~~~a~~c~d~~~k~~ll~~~~~i~~~~~QL~i~~~vka~~~~~~ 723 (832)
T 4igg_A 644 EMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLG 723 (832)
T ss_dssp HHHHHTTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSSC
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhHHHHHHHHHHhccccccCCC
Confidence 999988774 58999999999999999999999999999999999999999999999999999877754332 1
Q ss_pred -C-hhhHH----HHHHHHHHHHHHHHHHHHHH
Q psy15599 1722 -D-DYTHR----EFADTNRVLAEKVSQVLYAL 1747 (2347)
Q Consensus 1722 -d-~~t~~----~l~~~ar~v~e~v~~l~aal 1747 (2347)
+ ..++. .|..++|++...|.+++.+-
T Consensus 724 ~~~~~s~~d~~~~li~~aknlm~~v~~~v~~~ 755 (832)
T 4igg_A 724 GELVVSGVDSAMSLIQAAKNLMNAVVQTVKAS 755 (832)
T ss_dssp CSSCEEHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333 48889999988888886554
No 43
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=99.38 E-value=9.8e-12 Score=135.21 Aligned_cols=155 Identities=17% Similarity=0.342 Sum_probs=139.7
Q ss_pred CCcchHHHHHHHHHHHHHhhhhc-------cCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-CCCch-hHhhH
Q psy15599 928 LLPGQQEIEEITEIIESTYEQIH-------TDD-FPRSTKPIGRLQQELSSAATGLSETTNEVISSVK-NPANL-PASSK 997 (2347)
Q Consensus 928 ~lpgq~~l~~Aie~i~~a~~~l~-------~~~-~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~-~~~~L-~~~sk 997 (2347)
.++|..+|+.|++.|+....+|. .+. .|.|+.+++.+-+.|+.+++.++.++.+++.+++ +++.+ +.+++
T Consensus 4 e~Cg~~eld~Ale~V~~L~~eL~~~~~aa~~g~L~plPget~e~~~~~L~atsk~vgs~~aQLltaa~qgne~y~g~aar 83 (168)
T 2l7n_A 4 PFTGPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKLLGEIAQGNENYAGIAAR 83 (168)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTSSCCBSCCHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhhhhHHHH
Confidence 46788999999999998777664 233 3789999999999999999999999999999887 66655 55559
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 998 QYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNI 1077 (2347)
Q Consensus 998 ~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a 1077 (2347)
+.+.++.+|..++++++.+++||..|.+||+..+.|...+.+|+..+|.+..+|+|++...+|.+.+|.|+.++++++.
T Consensus 84 ~~A~aL~~lt~avrgvaatt~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak~vs~aL~~~v~- 162 (168)
T 2l7n_A 84 DVAGGLRSLAQAARGVAALTSDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVS- 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HhhcCCChh
Q psy15599 1078 CTSALPGQK 1086 (2347)
Q Consensus 1078 ~~~aapg~~ 1086 (2347)
+.|||+
T Consensus 163 ---cLPGqr 168 (168)
T 2l7n_A 163 ---CLPGQR 168 (168)
T ss_dssp ---SSCCCC
T ss_pred ---cCCCCC
Confidence 699985
No 44
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1
Probab=99.34 E-value=4.3e-12 Score=141.48 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC---CChhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------------
Q psy15599 676 DTLLSLAKAVANTTAALVLKAKSVAST---LPPNQQTSVITSATKCALATSQLVACTKVVAPTLE--------------- 737 (2347)
Q Consensus 676 d~L~~~AkaVa~Ata~Lv~~ak~~~~~---~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti~--------------- 737 (2347)
++|+.++++|..|+..|.......... .+.++++.|+.+|+.++.++..||.+++..+.+|.
T Consensus 20 ~El~~aa~aIe~Aa~kL~~l~~~~~~~~~~~~l~v~e~IL~aa~~i~~Ai~~LV~aA~~aQ~EiV~~Gr~~~s~~~fy~k 99 (206)
T 1r0d_A 20 KEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRGAATQQEFYAK 99 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Confidence 579999999999999988754433321 22789999999999999999999999988755443
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHh--hhcCCCCCcchHHHHHHHHhh
Q psy15599 738 NPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHI--KVTTTEPAQDVETAVEVMMSS 815 (2347)
Q Consensus 738 ~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~--k~~~~~~~~~~~~~~~~il~a 815 (2347)
|+.|.|+||+|+|.|+.+++.||.+++.+..+....|+|+.++++|+.++.+|+.+| |..+++++
T Consensus 100 n~~WtEGLISAAkaVa~at~~LveaAd~vv~g~~~~E~LIvaa~eVAAsTAQLvaAsrVKa~~~S~~------------- 166 (206)
T 1r0d_A 100 NSRWTEGLISASKAVGWGATQLVEAADKVVLHTGKYEELIVCSHEIAASTAQLVAASKVKANKHSPH------------- 166 (206)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTT-------------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChh-------------
Confidence 445999999999999999999999999999988899999999999999999999997 44555544
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15599 816 SDRLLAASGDAPEMVRQARILGQATAQLIQAIKGD 850 (2347)
Q Consensus 816 t~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~ 850 (2347)
+..+..+ +|.|.++|..||..+|..
T Consensus 167 ----~~~L~~A------sk~V~~A~~~lV~avk~~ 191 (206)
T 1r0d_A 167 ----LSRLQEC------SRTVNERAANVVASTKSG 191 (206)
T ss_dssp ----HHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3333333 778888888888877754
No 45
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus}
Probab=99.28 E-value=1.5e-11 Score=136.15 Aligned_cols=153 Identities=23% Similarity=0.256 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccCC--------------CC
Q psy15599 676 DTLLSLAKAVANTTAALVLKAKSVAS---TLPPNQQTSVITSATKCALATSQLVACTKVVAPTL--------------EN 738 (2347)
Q Consensus 676 d~L~~~AkaVa~Ata~Lv~~ak~~~~---~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti--------------~~ 738 (2347)
++|+.++++|.+|+..|......... ..++++++.|+.+|+.++.+++.||.+++..+.+| .|
T Consensus 14 ~EL~~aa~aIe~A~~~l~~l~~~~~~~~~~~~l~v~e~IL~aa~~i~~Ai~~Lv~aA~~aQ~Eiv~~Gr~~~~~~fy~~n 93 (189)
T 2jsw_A 14 NELLGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAIPANALDD 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCCSSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccC
Confidence 57999999999999998776444332 22378999999999999999999999998864443 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCcchHHHHHHHHhhH
Q psy15599 739 PACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIK--VTTTEPAQDVETAVEVMMSSS 816 (2347)
Q Consensus 739 p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k--~~~~~~~~~~~~~~~~il~at 816 (2347)
+.|.|+||+++|.|+.+|+.||.+++.+..+...+|+|+.++++|+.++.+|+.+++ ..+.+..
T Consensus 94 ~~WtEGLiSAAKaVa~at~~LveaAd~vv~g~~~~E~LIvaa~eVAAsTaQLvaAsrVKa~~~S~~-------------- 159 (189)
T 2jsw_A 94 GQWSQGLISAARMVAAATNNLCEAANAAVQGHASQEKLISSAKQVAASTAQLLVACKVKADQDSEA-------------- 159 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHH--------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH--------------
Confidence 569999999999999999999999999988877899999999999999999999985 3333211
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15599 817 DRLLAASGDAPEMVRQARILGQATAQLIQAIKGDA 851 (2347)
Q Consensus 817 ~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A 851 (2347)
+..+..+ +|.|.+++..||..++...
T Consensus 160 ---q~~L~~A------sk~V~~a~~~LV~~v~~a~ 185 (189)
T 2jsw_A 160 ---MKRLQAA------GNAVKRASDNLVKAAQKAA 185 (189)
T ss_dssp ---HHHHHHH------HHHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 3333333 7777777777777777544
No 46
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=99.21 E-value=1.4e-09 Score=129.13 Aligned_cols=200 Identities=10% Similarity=0.089 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchHHHHHHHHHHHHHHH
Q psy15599 711 VITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETC---TDENLNKDLTKAAAEVTKTL 787 (2347)
Q Consensus 711 li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~---~~~~~~eqL~~Aa~~V~~al 787 (2347)
|-..+...-..+.+|+.+||.++..+.||..+++++.++++++..++|+|.+++..+ +++.++|+|....+.|.+++
T Consensus 40 ~~~~~~~f~~~~~~l~~~aklva~~s~~~~~~~~v~~aa~~~~~l~pQvv~aar~l~~~p~s~~a~E~l~~~~~~w~~~v 119 (256)
T 1h6g_A 40 VKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQV 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344566667777888899999999999999999999999999999999999999764 45677999999999999999
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Q psy15599 788 NQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAA 867 (2347)
Q Consensus 788 ~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aA 867 (2347)
+.|...++...+. ++|+.+++.-+. +.. ......+ ...|| +.|.+++
T Consensus 120 ~~L~~~vd~~~~~---------~~fl~ase~~i~---------~~~-------~~c~~al-----~~~d~---~~~~~~a 166 (256)
T 1h6g_A 120 RVLTDAVDDITSI---------DDFLAVSENHIL---------EDV-------NKCVIAL-----QEKDV---DGLDRTA 166 (256)
T ss_dssp HHHHHHHHHHHCS---------HHHHHHHHHHHH---------HHH-------HHHHHHH-----HTTCH---HHHHHHH
T ss_pred HHHHHHHHHhcCh---------HHHHHHHHHHHH---------HHH-------HHHHHHH-----HcCCH---HHHHHHH
Confidence 9999999977743 246655544321 111 1111111 33354 5899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh-cchHHHHHhhh----hccccccccCCcchHHHHHHHHHH
Q psy15599 868 KNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQA-ATPTLRYKLFN----KSQTNEFEGLLPGQQEIEEITEII 942 (2347)
Q Consensus 868 k~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~A-t~~~i~~~~~~----~l~~~~~~~~lpgq~~l~~Aie~i 942 (2347)
+.++..+.++++.+|..++|-.||..+++|++|++.|+++ +..|+.....+ ..+|++... +..++++.+.|
T Consensus 167 ~~i~~~a~rv~~v~k~e~d~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~----~~~~~~a~~~L 242 (256)
T 1h6g_A 167 GAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMD----ENEFIDASRLV 242 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHH----HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 77788888776 556665554 67777777777
Q ss_pred HHHhh
Q psy15599 943 ESTYE 947 (2347)
Q Consensus 943 ~~a~~ 947 (2347)
..++.
T Consensus 243 ~~~v~ 247 (256)
T 1h6g_A 243 YDGIR 247 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 47
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=99.06 E-value=1.1e-10 Score=98.68 Aligned_cols=48 Identities=52% Similarity=0.703 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q psy15599 2280 KMVGGIAQEINARSEVLRIERQLEEARGRLTAIRQAKYKLKGGDGSAS 2327 (2347)
Q Consensus 2280 ~~~~~k~~eme~qv~il~le~~L~~~r~~L~~~rk~~Y~~~~~~~~~~ 2327 (2347)
+|+++|++||++|.+||++|+|||.||++|+.||+..|...+++.+++
T Consensus 2 ~~v~~~aqEi~Aqe~iLr~ErELEeAr~~La~iR~~kY~~~~~~~~~~ 49 (50)
T 2qdq_A 2 AMVGGIAQIIAAQEEMLRKERELEEARKKLAQIRQQQYKFLPSELRDE 49 (50)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 478999999999999999999999999999999999999876665544
No 48
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=98.90 E-value=3e-08 Score=108.89 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=139.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHhhhhHHHHHHHhhHHHHhhhHH
Q psy15599 1379 VAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFSVN 1458 (2347)
Q Consensus 1379 ~aPGQkECd~Ai~~l~~~i~~ld~~s~~~~~~~l~~~~~~~s~~~~~e~~~~~~~~l~~~i~~l~~A~~~~~e~l~~~v~ 1458 (2347)
+.+|-.-|++|+..|+..|.|||..+|=+-+++|.+..+ .+-..++|++...++.|-+....|..+.+...|+|+..++
T Consensus 1 ~srgtqAC~~A~s~V~~ii~DLDTt~lFA~AGtL~~~~~-~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a~~tQe~LA~aa~ 79 (199)
T 3fyq_A 1 MSRGTQACINAAHTVSGIIGDLDTTIMFATAGTLHSDGD-GSFADHREHILQTAKALVEDTKVLVTGAAGTQDQLANAAQ 79 (199)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhHHHhHHHHHHHHHcCCCCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 357899999999999999999999999999999998766 7778999999999999999999999999999999999999
Q ss_pred HHhhhhchhhhhHHHhhhcc--cChhhhhHHHHhhhHHHHHHHHHHHHHHhhCCCCCCCccccchHHHHHHHHHHHHHHH
Q psy15599 1459 QLVTSFDSLASDSMNVASNL--IHSKQQMTLLDQTKTVAECLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDIT 1536 (2347)
Q Consensus 1459 ~~~~~~~~l~~~a~~aas~~--~~~~~q~~~~~~sK~v~es~~~L~~~aK~~~gnp~~~~~~~~~~~a~~~~~eav~~l~ 1536 (2347)
..+..+..|....+..|+.+ .||+.|..|+..+|.|+-++-+|+.+.|...|+|...-..+.|.++...+.++|..|.
T Consensus 80 ~~v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdVa~aL~~Li~atK~a~g~~~~d~~~~~Lk~sak~~~~nV~sLl 159 (199)
T 3fyq_A 80 NAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVASALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLL 159 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888887 8999999999999999999999999999999999544446679999999999999888
Q ss_pred hhhh
Q psy15599 1537 SSLD 1540 (2347)
Q Consensus 1537 ~~~~ 1540 (2347)
.++.
T Consensus 160 ~tV~ 163 (199)
T 3fyq_A 160 KTVK 163 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8755
No 49
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=98.79 E-value=1.4e-08 Score=106.77 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=85.6
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CHHH----------------HHHHHHHHHHHHHHHHHH
Q psy15599 819 LLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEP-----DSEL----------------QRRLLAAAKNLAEATARM 877 (2347)
Q Consensus 819 L~~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~-----d~~~----------------~~~Ll~aAk~La~ats~L 877 (2347)
++..++.+ |+.|.+++++|++++|....... |... -.+|++++|.|+++|++|
T Consensus 13 ~~~~l~~A------A~~Vt~aL~dLL~hik~~~~~~~~~~~~~~~~d~Il~~t~~l~~s~gd~~eMvrqak~Laqat~~L 86 (139)
T 1u89_A 13 LLRGVGAA------ATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDL 86 (139)
T ss_dssp HHHTHHHH------HHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 45555555 99999999999999996533211 1100 147999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcchHHHHHhhhhccccccc
Q psy15599 878 VEAARQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFE 926 (2347)
Q Consensus 878 V~aaK~~a~~p~d~~~q~~L~~AAe~L~~At~~~i~~~~~~~l~~~~~~ 926 (2347)
|+++|..|+.-.|++.|++|+.||+.|++||.+||++...+.-+|++..
T Consensus 87 V~~iK~eAe~~~D~~~q~rLL~AAk~lAdATa~mVeAAk~~a~nP~~~~ 135 (139)
T 1u89_A 87 VNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEE 135 (139)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSC
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 9999999999999999999999999999999999999999999887543
No 50
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=98.47 E-value=5.6e-07 Score=94.36 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcchHH
Q psy15599 833 ARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTL 912 (2347)
Q Consensus 833 Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~At~~~i 912 (2347)
...|-.++.+|+... .|| .+|+++++.|++++++||+++|..+++..||+.|++|..|++.|.+++.+||
T Consensus 22 ~~~il~~t~~l~~s~-------~~p---~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MV 91 (131)
T 2l7a_A 22 TDTILTVTENIFSSM-------GDA---GEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMV 91 (131)
T ss_dssp HHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666665332 344 5799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccccccCCcchHHHHHHHHHHHHHhhhhccCC
Q psy15599 913 RYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDD 953 (2347)
Q Consensus 913 ~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~a~~~l~~~~ 953 (2347)
...+.+..+|++... |..|++|.+.|+.+++.+..++
T Consensus 92 eaAK~~A~NP~d~~~----q~~Lr~Aae~L~~at~~~~~~a 128 (131)
T 2l7a_A 92 EAAKGAAAHPDSEEQ----QQRLREAAEGLRMATNAAAQNA 128 (131)
T ss_dssp HHHHHHHHSSSCHHH----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987766 8899999999999887765544
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.17 E-value=2.2e-05 Score=85.84 Aligned_cols=115 Identities=27% Similarity=0.338 Sum_probs=93.9
Q ss_pred EEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccccc
Q psy15599 8 ICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRK 86 (2347)
Q Consensus 8 v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~ 86 (2347)
|+|.. .+.+.++.|.|+.+|.++...|.++...+ +++.-|++ .|++|+++++|..|++.+++.+++..+
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip----~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC----hHHeEEEE------CCeECcCcccHHHhccCCCCeeEEEee
Confidence 44432 24567899999999999999999987543 56666666 267899999999999999999987544
Q ss_pred ---ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 ---MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ---~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...+.|..++|....+.++.+.|+.++-..|+.+.|++ ++.+.|++
T Consensus 73 ~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~qrL~~ 121 (152)
T 3b08_A 73 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF 121 (152)
T ss_dssp CTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred cccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhhEEEEE
Confidence 35788999999999999999999999999999999987 45566654
No 52
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=98.16 E-value=5.2e-06 Score=91.97 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcC----CCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh--hhHHHH
Q psy15599 967 ELSSAATGLSETTNEVISSVK----NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVS--TSSSKF 1040 (2347)
Q Consensus 967 ~L~~aA~~L~~a~~~lv~~~~----~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~--~~s~kL 1040 (2347)
++...|+....-+-++....| +..+|+.+++.|++...+|...+++++.+|+|++.+.+|+..+++|. -+.+++
T Consensus 40 dII~~Ak~Ma~~m~~M~~ftrG~g~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll~~~~rI~t~~~QLkI 119 (188)
T 1qkr_A 40 DIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKI 119 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455555544444544444 44589999999999999999999999999999999999999999994 567777
Q ss_pred HHHHHhhcC---CC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15599 1041 LSTARSAAL---DP---SASNSKSQLSAAARNVADSINNLLNICTSA 1081 (2347)
Q Consensus 1041 l~~aKa~~~---~p---~d~~a~~qL~~aAr~l~~sin~Lv~a~~~a 1081 (2347)
+.++|+... .+ .|..+..+|.++||||+.+|.++|.+|+.+
T Consensus 120 ls~VKA~~~g~~~~~~~~~~~a~e~LIq~AkNLM~aV~~tVka~~~a 166 (188)
T 1qkr_A 120 LSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAA 166 (188)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888652 11 234567899999999999999999999875
No 53
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=98.04 E-value=0.00067 Score=80.14 Aligned_cols=207 Identities=13% Similarity=0.166 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q psy15599 829 MVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAA 908 (2347)
Q Consensus 829 mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~At 908 (2347)
+..-+..|..|+..||......+...+||+.+.+|..|++.+.++-..|..++.....+|.+...+..|..||+.|-.++
T Consensus 40 ~~~~~~aV~~Av~nfv~vG~~ia~~~ed~~lk~eM~~A~~~v~~ag~~l~~aa~~~~~dP~s~~~R~~lV~aAR~lLs~v 119 (258)
T 3rf3_A 40 LTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGT 119 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHH
Confidence 45568889999999999999999888999999999999999999999999999999999999999999999999987663
Q ss_pred chHHHHHhhhhccccccccCCcchHHHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15599 909 TPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKN 988 (2347)
Q Consensus 909 ~~~i~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~a~~~l~~~~~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~~ 988 (2347)
..-+.-. |.+. .+.|-.+.+.+.+.... +....+
T Consensus 120 trlLlla--------D~~d----Vr~il~~~~~v~~~l~~----------------------------------l~~~~~ 153 (258)
T 3rf3_A 120 SDLLLTF--------DEAE----VRKIIRVCKGILEYLTV----------------------------------AEVVET 153 (258)
T ss_dssp HHHHHHH--------HHHH----HHHHHHHHHHHHHHHTT----------------------------------GGGCCS
T ss_pred HHHHHHH--------HHHH----HHHHHHHHHHHHHHHHH----------------------------------HHhCCC
Confidence 3221100 0000 11111222222222111 112224
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC-----CCchhHHHHHHHH
Q psy15599 989 PANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALD-----PSASNSKSQLSAA 1063 (2347)
Q Consensus 989 ~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa~~~~-----p~d~~a~~qL~~a 1063 (2347)
..+|...-+.|.....+|...+..=+..-.|+..|.+|..+...+...+.-|+.+.|....+ |+-+.++.-=.-.
T Consensus 154 ~~el~~~~~~f~~~~~~L~~~~~~Rq~eL~~~~~r~~l~~Ar~~Lk~~~p~L~ta~k~~lrh~~~~~~~~~~a~~nRd~v 233 (258)
T 3rf3_A 154 MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFT 233 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHhHHHH
Confidence 45677777788888877877777766777799999999999999999999999999997655 7777777776778
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy15599 1064 ARNVADSINNLLNICTSA 1081 (2347)
Q Consensus 1064 Ar~l~~sin~Lv~a~~~a 1081 (2347)
.+.+.++|++++++.+.-
T Consensus 234 ~~~m~~al~~I~~vlq~~ 251 (258)
T 3rf3_A 234 VEKMSAEINEIIRVLQLT 251 (258)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 899999999999988654
No 54
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=97.92 E-value=5.6e-05 Score=87.33 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC----CCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH--hhhHHH
Q psy15599 966 QELSSAATGLSETTNEVISSVK----NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSV--STSSSK 1039 (2347)
Q Consensus 966 ~~L~~aA~~L~~a~~~lv~~~~----~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i--~~~s~k 1039 (2347)
.++...|+.+..-+-++....| +..+|+.++|.|++...+|...++++|.+|+|++.+.+|+..+++| .-..++
T Consensus 134 NdII~~AK~MA~mM~~Ms~ftRGg~kTt~DLI~~AK~IAe~g~~l~k~ar~iA~qCtD~r~K~~LL~~lerIpti~~QLk 213 (283)
T 3vf0_A 134 NDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLK 213 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhhhhHHHHHH
Confidence 4677777777776666666555 3458999999999999999999999999999999999999999999 556777
Q ss_pred HHHHHHhhc---CCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15599 1040 FLSTARSAA---LDPS---ASNSKSQLSAAARNVADSINNLLNICTSA 1081 (2347)
Q Consensus 1040 Ll~~aKa~~---~~p~---d~~a~~qL~~aAr~l~~sin~Lv~a~~~a 1081 (2347)
++.++|+.. .+.+ +..+.++|.++||||+.+|.++|.+|..+
T Consensus 214 Ils~VKA~~lg~q~~s~~~~~sa~esLIqnAKNLM~aV~~tVka~eaA 261 (283)
T 3vf0_A 214 ILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAA 261 (283)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888865 3333 35678899999999999999999999865
No 55
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=97.73 E-value=0.0017 Score=76.63 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch---HHHHHHHHHHHHHHHH
Q psy15599 712 ITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENL---NKDLTKAAAEVTKTLN 788 (2347)
Q Consensus 712 i~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~~~~~~~~---~eqL~~Aa~~V~~al~ 788 (2347)
..-+..+..|+.+||..+..++.+.+||..++.+..|.+.|..+...|..++..-..||.+ +..|..+++.+=.++.
T Consensus 41 ~~~~~aV~~Av~nfv~vG~~ia~~~ed~~lk~eM~~A~~~v~~ag~~l~~aa~~~~~dP~s~~~R~~lV~aAR~lLs~vt 120 (258)
T 3rf3_A 41 TAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHH
Confidence 3334556777777888777777777778888888888888888888877777665555533 5777777777777777
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHHhhHHHHH------HhcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHH
Q psy15599 789 QLLNHIKVTTTEPAQDVETAVEVMMSSSDRLL------AASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRR 862 (2347)
Q Consensus 789 ~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~------~~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~ 862 (2347)
.||-..+.+. +..|+.+..... ...++..+++...+.++..+..|...+..-...-.|+.+|++
T Consensus 121 rlLllaD~~d----------Vr~il~~~~~v~~~l~~l~~~~~~~el~~~~~~f~~~~~~L~~~~~~Rq~eL~~~~~r~~ 190 (258)
T 3rf3_A 121 DLLLTFDEAE----------VRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVM 190 (258)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSCHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 7776665443 333444444433 355677789999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15599 863 LLAAAKNLAEATARMVEAARQCASH 887 (2347)
Q Consensus 863 Ll~aAk~La~ats~LV~aaK~~a~~ 887 (2347)
|..+=..|...++-|+-+.|.|..+
T Consensus 191 l~~Ar~~Lk~~~p~L~ta~k~~lrh 215 (258)
T 3rf3_A 191 LVNSMNTVKELLPVLISAMKIFVTT 215 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999987
No 56
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=97.65 E-value=0.0075 Score=68.61 Aligned_cols=188 Identities=14% Similarity=0.144 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 684 AVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMC 763 (2347)
Q Consensus 684 aVa~Ata~Lv~~ak~~~~~~~~~~q~~li~aA~~~a~ats~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~aa 763 (2347)
+|..|+..||..+...+.++ |.+++.+..|...+-.+...|...+........+..-++.|+.+++.+=.+|..|+=.+
T Consensus 8 aV~~Av~nfv~vG~~ia~e~-~~lk~dM~~A~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~lV~aaR~lLs~vtrlLlla 86 (205)
T 1dow_A 8 SVEQATENFLEKGDKIAKES-QFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILA 86 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665554322 34666666666666666666666666666665566666677777777666666666555
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q psy15599 764 NETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQL 843 (2347)
Q Consensus 764 ~~~~~~~~~~eqL~~Aa~~V~~al~~Ll~~~k~~~~~~~~~~~~~~~~il~at~~L~~~~~~a~~mv~~Ak~va~a~~~L 843 (2347)
+.+ ...+|..+.+.|-+.++.|. ...+-++++...+.++..+-.|
T Consensus 87 D~~-----~Vrkil~~~~~v~~~L~~le------------------------------~~~s~~el~~~f~~f~~~m~~l 131 (205)
T 1dow_A 87 DMA-----DVYKLLVQLKVVEDGILKLR------------------------------NAGNEQDLGIQYKALKPEVDKL 131 (205)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHH------------------------------TCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHH------------------------------hcCCHHHHHHHHHHHhHHHHHH
Confidence 443 34555555555554444442 3345567777778888777777
Q ss_pred HHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q psy15599 844 IQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQA 907 (2347)
Q Consensus 844 v~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~A 907 (2347)
-..+..-...-.|+..+++|..+-..|...++-|+-+.|.|..+|+.++.+..=.-...+++.+
T Consensus 132 ~~l~~~Rq~dLk~~~~rd~l~aAr~~Lk~~sp~L~ta~k~~lrhp~~~~a~~nRd~v~~qm~~a 195 (205)
T 1dow_A 132 NIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQA 195 (205)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 7777766666678988999999999999999999999999999999988766544455555544
No 57
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.56 E-value=0.00098 Score=73.47 Aligned_cols=119 Identities=23% Similarity=0.144 Sum_probs=91.6
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccc-cccCCCccccccccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLF-LSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf-~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
+.|.|... .+.+.++.+.|+.+|.++-..|.++...+ ++.--|+ + +.|..|+.+++|..|++.+|+.++
T Consensus 3 m~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip----~~~QrL~~~-----~~g~~L~d~~tL~~y~i~~~~~l~ 72 (159)
T 3rt3_B 3 WDLTVKML-AGNEFQVSLSSSMSVSELKAQITQKIGVH----AFQQRLAVH-----PSGVALQDRVPLASQGLGPGSTVL 72 (159)
T ss_dssp CEEEEEET-TSCEEEEECCTTCCHHHHHHHHHHHHCCC----GGGEEEEEE-----TTCCBCCTTSCGGGGTCCTTCEEE
T ss_pred eEEEEEEC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCC----HHHEEEEEc-----CCCCCCCCCCCHHHcCCCCCCEEE
Confidence 34444432 34667899999999999999999987654 3333344 3 013458889999999999999998
Q ss_pred ccc----cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 83 YRR----KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 83 ~~~----~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+.- ....+.|..++|...++.|+++.|+.++-..|+.+.|++ ++.+-|++
T Consensus 73 l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~ 126 (159)
T 3rt3_B 73 LVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ-DDLFWLTF 126 (159)
T ss_dssp EEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred EEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC-HHHEEEEE
Confidence 753 345688899999999999999999999999999999986 44555655
No 58
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=97.52 E-value=0.01 Score=67.49 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhcchHH
Q psy15599 833 ARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTL 912 (2347)
Q Consensus 833 Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AAe~L~~At~~~i 912 (2347)
..+|..|...||...+..+...+| -+++|..|+..+-++-..|+.+++....+|.+...+..|..||+.|-.++..-+
T Consensus 6 ~~aV~~Av~nfv~vG~~ia~e~~~--lk~dM~~A~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~lV~aaR~lLs~vtrlL 83 (205)
T 1dow_A 6 AASVEQATENFLEKGDKIAKESQF--LKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLL 83 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999988877666 499999999999999999999999999999999999999999999977733222
Q ss_pred HHHhhhhccccccccCCcchHHHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCch
Q psy15599 913 RYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANL 992 (2347)
Q Consensus 913 ~~~~~~~l~~~~~~~~lpgq~~l~~Aie~i~~a~~~l~~~~~p~~~~~~~~~q~~L~~aA~~L~~a~~~lv~~~~~~~~L 992 (2347)
.-. |.+. .+.|-.+.+.+.+....+ ....+..+|
T Consensus 84 lla--------D~~~----Vrkil~~~~~v~~~L~~l----------------------------------e~~~s~~el 117 (205)
T 1dow_A 84 ILA--------DMAD----VYKLLVQLKVVEDGILKL----------------------------------RNAGNEQDL 117 (205)
T ss_dssp HHH--------HHHH----HHHHHHHHHHHHHHHHHH----------------------------------HTCSSHHHH
T ss_pred HHH--------HHHH----HHHHHHHHHHHHHHHHHH----------------------------------HhcCCHHHH
Confidence 111 0000 122222222222222111 112234456
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q psy15599 993 PASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSIN 1072 (2347)
Q Consensus 993 ~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa~~~~p~d~~a~~qL~~aAr~l~~sin 1072 (2347)
...-+.|....-+|...+..=+..-.|+..|-.|..+...+...+.-|+.+.|....+|+.+.++..=.-..+++.++++
T Consensus 118 ~~~f~~f~~~m~~l~~l~~~Rq~dLk~~~~rd~l~aAr~~Lk~~sp~L~ta~k~~lrhp~~~~a~~nRd~v~~qm~~al~ 197 (205)
T 1dow_A 118 GIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVT 197 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777776666677899999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy15599 1073 NLLNICT 1079 (2347)
Q Consensus 1073 ~Lv~a~~ 1079 (2347)
+++++.+
T Consensus 198 ~I~~v~q 204 (205)
T 1dow_A 198 GISNAAQ 204 (205)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998764
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.48 E-value=0.0012 Score=73.90 Aligned_cols=117 Identities=26% Similarity=0.334 Sum_probs=92.0
Q ss_pred EEEEEe-cCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIV-DRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~-~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
..|+|. -.+.+.++.+.|+.+|.++-.+|.++...+ +++--|++ .|+.|+.+++|..|++.+++.+++.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip----~~~QrL~~------~g~~L~d~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC----hHHEEEEE------CCccccccCCHhHcCCcccceeeee
Confidence 455554 234667899999999999999999987643 34444554 2456888999999999999998876
Q ss_pred cc---ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 85 RK---MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~---~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
-+ ...+.|..++|....+.|+.+.|+.++-..|..+.||+. +.+-|++
T Consensus 91 ~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~ 141 (172)
T 3u30_A 91 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 141 (172)
T ss_dssp ECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCCEEE
T ss_pred ecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc-eeEEEEE
Confidence 33 446788889999999999999999999999999999963 4445544
No 60
>3s90_C Talin-1, metavinculin; four-helix bundle, cell adhesion, focal adhesion; 1.97A {Mus musculus}
Probab=97.40 E-value=9.1e-05 Score=60.84 Aligned_cols=36 Identities=75% Similarity=0.917 Sum_probs=25.9
Q ss_pred hhhcCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1236 IASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKAL 1271 (2347)
Q Consensus 1236 ~as~~~~n~~~~~~~~~~ak~v~~at~~Lv~~ik~~ 1271 (2347)
++|.++.||..|+||++++++|+++|++||+.||++
T Consensus 5 laS~kt~nP~~K~~Fv~~AkeVa~~Ta~Lv~~ikaL 40 (40)
T 3s90_C 5 SASARTANPTAKRQFVQSAKEVANSTANLVKTIKAL 40 (40)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccCCchhhHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 478899999999999999999999999999999874
No 61
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=97.39 E-value=3.4e-05 Score=60.13 Aligned_cols=30 Identities=63% Similarity=0.721 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15599 856 DSELQRRLLAAAKNLAEATARMVEAARQCA 885 (2347)
Q Consensus 856 d~~~~~~Ll~aAk~La~ats~LV~aaK~~a 885 (2347)
||+.|++|+++||.|+++|++||+++|+|+
T Consensus 1 D~~~q~rLl~aak~vaeata~mVeaak~~a 30 (31)
T 1u6h_B 1 DLENSRKLLSAAKILADATAKMVEAAKGAA 30 (31)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577899999999999999999999999986
No 62
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=97.38 E-value=0.00022 Score=71.53 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=48.5
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPE 137 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~ 137 (2347)
+...|+||+.||+.++|.|+...|+.|+++.++.+.++.....|+||...++
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~ 59 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPH 59 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETT
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 3458999999999999999999999999999999999999999999998774
No 63
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1
Probab=97.31 E-value=0.00016 Score=78.53 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=64.6
Q ss_pred hhhhhcchhhHhhhhHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCCCChhHhHHHHHHhHHHHHHHHHHHhhccccc
Q psy15599 592 ITSISHTLPEMSKGVRMLAALTPSGDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQT 671 (2347)
Q Consensus 592 i~~i~s~~~~~~~~~k~la~l~~~~~~L~~aar~La~a~s~ll~~~~p~~~~~rq~ll~AA~~l~~a~~~Ll~~i~e~~~ 671 (2347)
++.+|++|+.+.+|+++++. + .|.|+. +..+++.....|++|+++|++++++||+.. +++.
T Consensus 89 ~taVG~AittI~SNl~em~k----~------vk~laA--------L~~de~~~g~~Ll~Aar~L~~A~s~lLk~~-~p~~ 149 (174)
T 1sj7_A 89 YTAVGCAVTTISSNLTEMSR----G------VKLLAA--------LLEDEGGNGRPLLQAAKGLAGAVSELLRSA-QPAS 149 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----H------HHHHHH--------HHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-CTTC
T ss_pred ccchhhHHHHHHhhhHHHHH----H------HHHHHh--------hccCCccccHHHHHHHHHHHHHHHHHHhcc-CCcc
Confidence 57889999999999988432 3 333333 122332334579999999999999999975 6677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy15599 672 NEMQDTLLSLAKAVANTTAALVL 694 (2347)
Q Consensus 672 ~e~~d~L~~~AkaVa~Ata~Lv~ 694 (2347)
+++|+.|+++|+.|+.|+.+|+.
T Consensus 150 ~~~rq~ll~AA~~Vg~as~~lL~ 172 (174)
T 1sj7_A 150 AEPRQNLLQAAGNVGQASGELLQ 172 (174)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999764
No 64
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=96.89 E-value=0.0017 Score=64.22 Aligned_cols=85 Identities=26% Similarity=0.299 Sum_probs=67.9
Q ss_pred HHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCC
Q psy15599 218 LNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLS 297 (2347)
Q Consensus 218 l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS 297 (2347)
+.--|.++...|-.-.-..+.++.++|=||.=|+..||++.. +|+++++. ....| ++|+++.|||
T Consensus 4 L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~--~Pg~~d~~--------~~aKw-----~AW~~l~g~s 68 (89)
T 3epy_A 4 LQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIA--CPGMLDLK--------GKAKW-----EAWNLKKGLS 68 (89)
T ss_dssp HHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC--CTTTTCHH--------HHHHH-----HHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCC--CCcccchH--------HHHHH-----HHHHHhhCCC
Confidence 556788899888877777899999999999999999998753 45544422 11123 7999999999
Q ss_pred HHHHHHHHHHHhccC-CCCCc
Q psy15599 298 ELDAKVLYTKTCRSL-PTYGV 317 (2347)
Q Consensus 298 ~~eAk~~YL~~~rsl-p~YG~ 317 (2347)
+.+||..||+++.++ |.||.
T Consensus 69 ~eeA~~~Yi~~v~~l~~ky~~ 89 (89)
T 3epy_A 69 TEDATSAYISKAKELIEKYGI 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhhhcC
Confidence 999999999999876 77773
No 65
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=96.74 E-value=0.0021 Score=63.38 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=63.1
Q ss_pred HHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHH
Q psy15599 221 LYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELD 300 (2347)
Q Consensus 221 LY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~e 300 (2347)
-|.++...|-.-.-..+.++.++|=||.=|+..||++. .+|+++++. .+.=.++|+++.|||+.+
T Consensus 5 ~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~--~~Pg~~d~~-------------~~aKw~AW~~l~gms~ee 69 (87)
T 2cb8_A 5 EFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT--ERPGMLDFT-------------GKAKWDAWNELKGTSKED 69 (87)
T ss_dssp HHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCS--CCCCTTCHH-------------HHHHHHHHHTTTTCCHHH
T ss_pred HHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCC--CCCCcccHH-------------HHHHHHHHHHcCCCCHHH
Confidence 46777777766555679999999999999999999974 346554321 122248999999999999
Q ss_pred HHHHHHHHhccC-CCCC
Q psy15599 301 AKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 301 Ak~~YL~~~rsl-p~YG 316 (2347)
||..||+++..+ |.||
T Consensus 70 A~~~Yi~~v~~l~~~~~ 86 (87)
T 2cb8_A 70 AMKAYINKVEELKKKYG 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 999999999865 7776
No 66
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=96.71 E-value=0.0036 Score=62.02 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=63.0
Q ss_pred HHHHhHhhhccCC--CcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCH
Q psy15599 221 LYVQARDAVLDGT--HPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSE 298 (2347)
Q Consensus 221 LY~Qar~dIL~G~--~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~ 298 (2347)
.|..+...|-.-. ...+.++.++|=||.=|+..||++. .+|+++++. .+.=.++|+++.|||+
T Consensus 5 ~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~--~~Pg~~d~~-------------~~aKw~AW~~l~gms~ 69 (89)
T 1hbk_A 5 VFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNI--KEPSAHKYI-------------DRKKYEAWKSVENLNR 69 (89)
T ss_dssp HHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCS--CCCCTTSHH-------------HHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCC--CCCCccCHH-------------hHHHHHHHHHhcCCCH
Confidence 4677777776644 6789999999999999999999975 345544321 1222489999999999
Q ss_pred HHHHHHHHHHhccC-CCCC
Q psy15599 299 LDAKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 299 ~eAk~~YL~~~rsl-p~YG 316 (2347)
.+||..||+++.++ |.||
T Consensus 70 eeA~~~YI~~v~~l~~~~~ 88 (89)
T 1hbk_A 70 EDAQKRYVDIVSEIFPYWQ 88 (89)
T ss_dssp HHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHccccc
Confidence 99999999999865 8886
No 67
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=96.63 E-value=0.013 Score=59.31 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=71.8
Q ss_pred EEEEEEccCCC-CcceeEEEEecCCceEEEeCCc-cceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHH
Q psy15599 319 FFLVKEKMKGK-NKLVPRLLGVTKDSVLRLDERT-KEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAE 393 (2347)
Q Consensus 319 ~F~Vk~k~~g~-~~~~~vlLGI~~~GI~ild~~t-kevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k 393 (2347)
.|.|......+ .-..+.+|=|+.++|.+.++.+ +.++..|||..|++|+.+++.|.++-|..- .+.|.|.|.+++
T Consensus 6 ~F~V~v~ps~~~~l~G~~~L~l~~~~l~L~~~~~~~~~l~~Wp~~~LRRyG~~~~~FsFEaGRrC~tG~G~f~F~~~~~~ 85 (103)
T 1j0w_A 6 RFNVYLMPSPNLDVHGECALQITYEYICLWDVQNPRVKLISWPLSALRRYGRDTTWFTFEAGRMCETGEGLFIFQTRDGE 85 (103)
T ss_dssp EEEEEECCCSSCSCCEEEEEEECSSEEEEEESSSTTBEEEEEEGGGEEEEEECSSEEEEEECSSSSSCSEEEEEECSCHH
T ss_pred eeEEEEEeCCCCCCCccEEEEECCCEEEEEecCCCCcceEEeeHHHHhhcCccCCEEEEEeCCCCCCCCcEEEEEcCCHH
Confidence 57776542221 1235789999999999999875 467899999999999999999999998542 358999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy15599 394 QIQQLIAGYIDIIL 407 (2347)
Q Consensus 394 ~I~~LI~gYi~l~l 407 (2347)
+|..++..++..+-
T Consensus 86 ~If~~v~~ai~a~~ 99 (103)
T 1j0w_A 86 AIYQKVHSAALAIA 99 (103)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 68
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0026 Score=62.68 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=62.5
Q ss_pred HHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHH
Q psy15599 221 LYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELD 300 (2347)
Q Consensus 221 LY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~e 300 (2347)
.|..+...|-.-.-..+.++.++|=||.=|+..||++. .+|+++++. .+.=.++|+++.|||+.+
T Consensus 4 ~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~--~~Pg~~d~~-------------~raKw~AW~~l~gms~ee 68 (86)
T 1st7_A 4 LFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDK--EKPGIFNMK-------------DRYKWEAWENLKGKSQED 68 (86)
T ss_dssp HHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCC--CCCCSSCHH-------------HHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCC--CCCCccCHH-------------HHHHHHHHHHcCCCCHHH
Confidence 46777777766555679999999999999999999975 346544321 122248999999999999
Q ss_pred HHHHHHHHhccC-CCCC
Q psy15599 301 AKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 301 Ak~~YL~~~rsl-p~YG 316 (2347)
||..||+++..+ |.||
T Consensus 69 A~~~YI~~v~~l~~~~~ 85 (86)
T 1st7_A 69 AEKEYIALVDQLIAKYS 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 999999999765 6665
No 69
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=96.46 E-value=0.0023 Score=63.89 Aligned_cols=80 Identities=26% Similarity=0.298 Sum_probs=61.8
Q ss_pred HHHhHhhhccCC-CcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCHHH
Q psy15599 222 YVQARDAVLDGT-HPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELD 300 (2347)
Q Consensus 222 Y~Qar~dIL~G~-~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~~e 300 (2347)
|..+...|-.-. ...+.++.++|=||.=|+..||++. .+|+++++. .+.=.++|+++.|||+.+
T Consensus 14 F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~--~~Pg~~d~~-------------graKw~AW~~l~gmS~ee 78 (96)
T 2lbb_A 14 FDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNK--PKPGMLQLQ-------------EKYKWEAWNALRGMSTES 78 (96)
T ss_dssp HHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCC--CCCCSSCSH-------------HHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCC--CCCCcccHH-------------hHHHHHHHHHhcCCCHHH
Confidence 566666666544 6678999999999999999999975 346555421 122248999999999999
Q ss_pred HHHHHHHHhccC-CCCC
Q psy15599 301 AKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 301 Ak~~YL~~~rsl-p~YG 316 (2347)
||..||+++..+ |.||
T Consensus 79 Am~~YI~lv~~l~~~~~ 95 (96)
T 2lbb_A 79 AKEAYVKLLDTLAPSWR 95 (96)
T ss_dssp HHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHhchhc
Confidence 999999999764 7776
No 70
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.0074 Score=61.91 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=67.1
Q ss_pred HHHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCC
Q psy15599 218 LNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLS 297 (2347)
Q Consensus 218 l~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS 297 (2347)
+.-.|..+...|-.-.-..+.++.++|=||.=|+..||++.. +|+++++. .+.=.++|+++.|||
T Consensus 8 l~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~--~Pg~~d~~-------------~raKw~AW~~l~gms 72 (109)
T 2cop_A 8 LAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTP--KPSFFDFE-------------GKQKWEAWKALGDSS 72 (109)
T ss_dssp SHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSC--CCCSSCHH-------------HHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCC--CCCccCHH-------------HHHHHHHHHHhcCCC
Confidence 345688888888776667899999999999999999999863 56554321 112248999999999
Q ss_pred HHHHHHHHHHHhccC-CCCCc
Q psy15599 298 ELDAKVLYTKTCRSL-PTYGV 317 (2347)
Q Consensus 298 ~~eAk~~YL~~~rsl-p~YG~ 317 (2347)
+.+||..||+++..+ |.|+.
T Consensus 73 ~eeAm~~YI~lv~~l~~~~~~ 93 (109)
T 2cop_A 73 PSQAMQEYIAVVKKLDPGWNP 93 (109)
T ss_dssp HHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999865 88874
No 71
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.27 E-value=0.01 Score=60.97 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=65.9
Q ss_pred eeEEEEecCCceEE-EeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHHHHHH
Q psy15599 333 VPRLLGVTKDSVLR-LDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGYIDII 406 (2347)
Q Consensus 333 ~~vlLGI~~~GI~i-ld~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gYi~l~ 406 (2347)
.+.+|-|..++|.+ .++.++..+..|||..|++|+++.+.|.++.|..- .+.|.|.|.++.+|...|..+|+-.
T Consensus 28 G~y~L~l~~~~l~L~~~~~~~~~l~~Wpl~~LRryG~d~~~FsfEaGRrC~tGeG~f~F~t~~~~~if~~l~~~i~~~ 105 (113)
T 2dlw_A 28 GSYTLRAGESALELWGGPEPGTQLYDWPYRFLRRFGRDKVTFSFEAGRRCVSGEGNFEFETRQGNEIFLALEEAISAQ 105 (113)
T ss_dssp SEEEEEECSSBEECCCSSSSCCCSSCCBGGGCCCEEEETTEEEEEECSSCSSCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcCCEEEEEecCCCCCceEEEEhHHhhhcCccCCEEEEEecCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 37899999999999 67888999999999999999999999999998542 3589999999999999999987654
No 72
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.11 E-value=0.01 Score=61.28 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHHHHHhHhhhccCCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCCCH
Q psy15599 219 NLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSE 298 (2347)
Q Consensus 219 ~lLY~Qar~dIL~G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~glS~ 298 (2347)
.--|.++...|-.-.-..+.++.++|=||.=|+..||++. .+|+++++. .... .++|+++.||++
T Consensus 17 ~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~--~~Pg~~d~~--------graK-----w~AW~~l~gms~ 81 (116)
T 2cqu_A 17 QKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNM--PKPGVFDLI--------NKAK-----WDAWNALGSLPK 81 (116)
T ss_dssp HHHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCS--CCCCTTCHH--------HHHH-----HHHHHHHCSCCH
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCC--CCCCcccHH--------HHHH-----HHHHHHhcCCCH
Confidence 3457777777666445578999999999999999999974 345544321 1112 489999999999
Q ss_pred HHHHHHHHHHhccC-CCCCc
Q psy15599 299 LDAKVLYTKTCRSL-PTYGV 317 (2347)
Q Consensus 299 ~eAk~~YL~~~rsl-p~YG~ 317 (2347)
.+||..||+++..+ |.|+.
T Consensus 82 eeAm~~YI~lv~~l~~~~~~ 101 (116)
T 2cqu_A 82 EAARQNYVDLVSSLSPSLES 101 (116)
T ss_dssp HHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHHHcccccc
Confidence 99999999999865 77764
No 73
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=95.96 E-value=0.024 Score=57.89 Aligned_cols=71 Identities=24% Similarity=0.435 Sum_probs=62.0
Q ss_pred eEEEEecCCceEEEeC----CccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHHHH
Q psy15599 334 PRLLGVTKDSVLRLDE----RTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGYID 404 (2347)
Q Consensus 334 ~vlLGI~~~GI~ild~----~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gYi~ 404 (2347)
+.+|-|....|.+++. ..++.+..|||..|++|+++.+.|.++.|..- .+.|.|.|.++.+|.+.|..+|+
T Consensus 24 ~y~L~v~~~~l~L~~~~~~~~~~~~~~~Wp~~~LRryG~d~~~FsFEaGRrc~tG~G~f~F~~~~~~~If~~l~~~i~ 101 (107)
T 2v76_A 24 SYVLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVETAIH 101 (107)
T ss_dssp EEEEEECSSEEEEEEEC----CEEEEEEEEGGGEEEEEECSSEEEEEECTTSTTCSEEEEEECSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCEEEEEecCccCCCCceeEEEEhHHhhhcCccCCEEEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 7899999999999874 46778899999999999999999999998542 35899999999999999998875
No 74
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=95.85 E-value=0.095 Score=54.73 Aligned_cols=93 Identities=17% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEe
Q psy15599 312 LPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQ 388 (2347)
Q Consensus 312 lp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~ 388 (2347)
+|.---..|.|..-....+...+.+|-|....|.+++++. .+..|||..+++|+++.+.|.++-|..- .+.|.|.
T Consensus 6 ~~~~~~~~F~V~~~~~~~~e~g~~~L~lt~~~L~L~~~~~--~~~~Wp~~~LRrYG~d~~~FsFEaGRRC~tGeGiF~F~ 83 (129)
T 1xr0_B 6 VPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKR--DSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFK 83 (129)
T ss_dssp CCCCCCCEEEEEEECSSCCCCCCEEEEECSSCEEEEETTT--EEEEECSTTEEEEEECSSEEEEEECSCSTTCSEEEEEE
T ss_pred ccccccCEEEEEEeCCCCCcceeEEEEEecCEEEEEeCCC--CeeEcchHHhhhcCccCCEEEEEcCCCCCCCCcEEEEE
Confidence 3444456777764322223356789999999999987553 4569999999999999999999997542 4589999
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy15599 389 TTEAEQIQQLIAGYIDII 406 (2347)
Q Consensus 389 T~q~k~I~~LI~gYi~l~ 406 (2347)
|.++++|..++..+++-.
T Consensus 84 t~~~~~If~~l~~~i~~~ 101 (129)
T 1xr0_B 84 CARAEELFNMLQEIMQNN 101 (129)
T ss_dssp CSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcc
Confidence 999999999999887633
No 75
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.84 E-value=0.008 Score=63.17 Aligned_cols=80 Identities=31% Similarity=0.380 Sum_probs=65.1
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCC-------------------------c
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDV-------------------------K 59 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~-------------------------~ 59 (2347)
.|+|...|+ ..++++++.+.+|++++..|..+++.. +..+|+|-.....+ +
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~kigI~---n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k 88 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARIGIT---NHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLK 88 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHHTCC---CCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSC
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHhCCC---CcccccccccccccccccCchhhccccccccchhHHHHHH
Confidence 478888866 779999999999999999999999876 45778776543323 1
Q ss_pred -c------ccccccCCchhhhhccCCccccccccce
Q psy15599 60 -K------GVWLEPGRNLEYYILRNGDELEYRRKMR 88 (2347)
Q Consensus 60 -k------~~WL~~~~tL~~y~l~~~~~L~~~~~~r 88 (2347)
+ ..||.++++|-.+|+..++.|.+++++.
T Consensus 89 ~kL~~dd~~~WLD~srtL~EQGI~e~~tllLRrKff 124 (128)
T 2kc2_A 89 QKLHTDDELNWLDHGRTLREQGVEEHETLLLRRKFF 124 (128)
T ss_dssp CSCCCSSSEEEECSSSCHHHHTCCTTSEEEEEESSC
T ss_pred HHhcccCCCCcccCCCcHHHcCCCCCCEEEEEEEEe
Confidence 1 2799999999999999999999888753
No 76
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=95.82 E-value=0.03 Score=58.64 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=64.8
Q ss_pred eeEEEEecCCceEEEeC----CccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHHHHHHHHHHHHHH
Q psy15599 333 VPRLLGVTKDSVLRLDE----RTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAEQIQQLIAGYIDI 405 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~----~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k~I~~LI~gYi~l 405 (2347)
.+.+|-|..+.|.++++ ..++.+..|||..|++|+++.+.|.++.|..- .+.|.|.|.++.+|..+|..+|+-
T Consensus 25 G~y~L~vt~~~l~L~~~~~~~~~~~~l~~Wp~~~LRryG~d~~~FsFEaGRrC~tGeG~f~F~t~~~~~If~~l~~~i~~ 104 (127)
T 1p5t_A 25 GSYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTSQGNDIFQAVEAAIQQ 104 (127)
T ss_dssp SEEEEEECSSEEEEEEECTTTCSEEEEEEEEGGGEEEEEECSSEEEEEECTTSTTCSEEEEEECSCHHHHHHHHHHHHHH
T ss_pred ccEEEEEcCCEEEEEecCcccCCCcceEEEehHHhhhcCccCCEEEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 37899999999999974 35778899999999999999999999998542 358999999999999999988765
Q ss_pred HH
Q psy15599 406 IL 407 (2347)
Q Consensus 406 ~l 407 (2347)
..
T Consensus 105 ~k 106 (127)
T 1p5t_A 105 QK 106 (127)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 77
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus}
Probab=95.78 E-value=0.0025 Score=47.09 Aligned_cols=26 Identities=92% Similarity=0.920 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 2127 ILEAAKSIAAATSALVKAASASQREL 2152 (2347)
Q Consensus 2127 Il~~a~~i~~a~~~Lv~aa~~~q~ei 2152 (2347)
||++|+.|+.|+..||++|+.+|+|+
T Consensus 1 IL~aak~i~~a~~~Lvk~A~aAqrEl 26 (26)
T 1zw2_B 1 ILEAAKSIAAATSALVKAASAAQREX 26 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-----
T ss_pred CchHHHHHHHHHHHHHHHhhhcccCC
Confidence 69999999999999999999999996
No 78
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=95.73 E-value=0.059 Score=57.48 Aligned_cols=86 Identities=22% Similarity=0.395 Sum_probs=68.2
Q ss_pred cEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHH
Q psy15599 317 VTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAE 393 (2347)
Q Consensus 317 ~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k 393 (2347)
-..|.|.....+.+...+.+|-|+...|.+++++.+ +..|||..|++|+.+.+.|.++-|..- .+.|.|.|.+++
T Consensus 18 ~~~F~V~v~~~~~~e~G~~~L~lt~~~L~L~~~~~~--~~~WPy~~LRRYG~d~~~FsFEaGRRC~tGeGiF~F~t~~~e 95 (153)
T 2kuq_A 18 PTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRRE--AVRWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAE 95 (153)
T ss_dssp SSEEEEEEECTTCCEEEEEEEEECSSCEEEECSSSC--CEEECGGGEEEEEEETTEEEEEECTTSTTCSEEEEEECTTHH
T ss_pred CCEeEEEEeCCCCCceeeEEEEEcCCEEEEEeCCCC--ceEccHHHhhhcCccCCEEEEECCCCCCCCCcEEEEEcCCHH
Confidence 456777654233333467899999999999988754 359999999999999999999997542 358999999999
Q ss_pred HHHHHHHHHHH
Q psy15599 394 QIQQLIAGYID 404 (2347)
Q Consensus 394 ~I~~LI~gYi~ 404 (2347)
+|..++..+|+
T Consensus 96 ~If~~l~~~iq 106 (153)
T 2kuq_A 96 EIFNLLQDLMQ 106 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 79
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=95.58 E-value=0.062 Score=57.14 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=67.6
Q ss_pred cEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEechHHH
Q psy15599 317 VTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQTTEAE 393 (2347)
Q Consensus 317 ~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T~q~k 393 (2347)
-..|.|.....+.+...+.+|-|+...|.+++.+ ..+..|||..|++|+++.+.|.++-|..- .+.|.|.|.+++
T Consensus 18 ~~~F~V~v~~~~~~e~G~~~L~Lt~~~L~L~~~~--~~~~~WPy~~LRRYG~d~~~FsFEaGRrC~tGeGiF~F~t~~~e 95 (146)
T 2kup_A 18 PTKFKVTNVDDEGVELGSGVMELTQSELVLHLHR--REAVRWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAE 95 (146)
T ss_dssp SSEEEEEEECTTCCEEEEEEEEECSSCEEEECSS--SCCEEECGGGCSCEEEETTEEEEEECTTSSSCSEEEEEECTTHH
T ss_pred CCEEEEEEeCCCCCcceeEEEEEccCEEEEEcCC--CCeeEcCHHHhhhcCccCCEEEEEcCCCCCCCCCEEEEEcCCHH
Confidence 4567776542333334678899999999998765 34669999999999999999999997542 358999999999
Q ss_pred HHHHHHHHHH
Q psy15599 394 QIQQLIAGYI 403 (2347)
Q Consensus 394 ~I~~LI~gYi 403 (2347)
+|..++..++
T Consensus 96 ~If~~l~~~i 105 (146)
T 2kup_A 96 EIFNLLQDLM 105 (146)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 80
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=95.32 E-value=0.031 Score=57.82 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=64.1
Q ss_pred HHHHHHHhHhhhcc----CCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhc
Q psy15599 218 LNLLYVQARDAVLD----GTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNH 293 (2347)
Q Consensus 218 l~lLY~Qar~dIL~----G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l 293 (2347)
+.--|.++...|.. |.+..+.++.++|=||.=|+..||++. .+|+++++. ....| ++|+++
T Consensus 24 Le~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~--~~Pg~~d~~--------graKw-----~AW~~l 88 (119)
T 3flv_A 24 HETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKL--SRPGFWDPI--------GRYKW-----DAWSSL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCS--CCCCTTCHH--------HHHHH-----HHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCC--CCCCccCHH--------HHHHH-----HHHHHc
Confidence 55567777776654 455679999999999999999999974 345554422 11134 799999
Q ss_pred cCCCHHHHHHHHHHHhccC-CCCCc
Q psy15599 294 VGLSELDAKVLYTKTCRSL-PTYGV 317 (2347)
Q Consensus 294 ~glS~~eAk~~YL~~~rsl-p~YG~ 317 (2347)
.|||+.+||..||+++..+ +.|+.
T Consensus 89 ~gmS~eeAm~~YI~~v~~l~~~~~~ 113 (119)
T 3flv_A 89 GDMTKEEAMIAYVEEMKKIIETMPM 113 (119)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999765 66654
No 81
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=95.22 E-value=0.036 Score=56.49 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=58.4
Q ss_pred HHHHhHhhhcc----CCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCC
Q psy15599 221 LYVQARDAVLD----GTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGL 296 (2347)
Q Consensus 221 LY~Qar~dIL~----G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~gl 296 (2347)
.|.++...|-. |.+..+.++.++|=||.=|+..||++. .+|+++++. .... .++|+++.||
T Consensus 11 ~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~--~~Pg~~d~~--------~~aK-----w~AW~~l~gm 75 (106)
T 2wh5_A 11 QFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLV--PRPGFWDPI--------GRYK-----WDAWNSLGKM 75 (106)
T ss_dssp HHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCS--CCCCTTCHH--------HHHH-----HHHHHTTTTC
T ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCC--CCCCcccHH--------HHHH-----HHHHHHhcCC
Confidence 46666666543 445789999999999999999999974 345544321 1112 4899999999
Q ss_pred CHHHHHHHHHHHhccC
Q psy15599 297 SELDAKVLYTKTCRSL 312 (2347)
Q Consensus 297 S~~eAk~~YL~~~rsl 312 (2347)
|+.+||..||+++..+
T Consensus 76 s~eeA~~~YI~~v~~l 91 (106)
T 2wh5_A 76 SREEAMSAYITEMKLV 91 (106)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 82
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=95.07 E-value=0.044 Score=55.81 Aligned_cols=81 Identities=21% Similarity=0.172 Sum_probs=60.6
Q ss_pred HHHHhHhhhcc----CCCcCCHHHHHHHHhHHHhhhcCCCCCCCCCCCccccccccchhhhhhhhHHHHHHHHHHhccCC
Q psy15599 221 LYVQARDAVLD----GTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGL 296 (2347)
Q Consensus 221 LY~Qar~dIL~----G~~p~see~ai~LAALqlQie~GD~~~~k~~~~~l~l~~~lP~~~lk~k~~~~~I~~~hk~l~gl 296 (2347)
.|.++...|-. |....+.++.++|=||.=|+..||++.. +|+++++. ....| ++|+++.||
T Consensus 7 ~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~--~Pg~~d~~--------~raKw-----~AW~~l~gm 71 (106)
T 3fp5_A 7 KFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNIS--RPGLMDFT--------GKAKW-----DAWKSVEGT 71 (106)
T ss_dssp HHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSC--CCCTTCHH--------HHHHH-----HHHHTTTTC
T ss_pred HHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCC--CCCccchH--------HHHHH-----HHHHHccCC
Confidence 46666666644 3357899999999999999999999753 45554421 11234 799999999
Q ss_pred CHHHHHHHHHHHhccC-CCCC
Q psy15599 297 SELDAKVLYTKTCRSL-PTYG 316 (2347)
Q Consensus 297 S~~eAk~~YL~~~rsl-p~YG 316 (2347)
|+.+||..||+++..+ |.||
T Consensus 72 S~eeA~~~YI~~v~~l~~~~~ 92 (106)
T 3fp5_A 72 SKEVAYQKYVEKLLEILKKAD 92 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhcccC
Confidence 9999999999998764 4454
No 83
>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus gallus}
Probab=94.17 E-value=0.02 Score=43.26 Aligned_cols=25 Identities=72% Similarity=0.925 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15599 828 EMVRQARILGQATAQLIQAIKGDAE 852 (2347)
Q Consensus 828 ~mv~~Ak~va~a~~~Lv~~~k~~A~ 852 (2347)
+||+++|.|++++++||+.+|.+|+
T Consensus 2 ~mv~qak~laqat~~Li~~~K~~a~ 26 (26)
T 1zvz_B 2 EMVRQARILAQATSDLVNAIKADAX 26 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5788888888888888888887653
No 84
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=94.16 E-value=0.02 Score=43.28 Aligned_cols=25 Identities=52% Similarity=0.676 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15599 1725 THREFADTNRVLAEKVSQVLYALQA 1749 (2347)
Q Consensus 1725 t~~~l~~~ar~v~e~v~~l~aal~~ 1749 (2347)
++++|++++|.|+|+|.+||++|++
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLqa 26 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQA 26 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4679999999999999999999974
No 85
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=94.04 E-value=0.24 Score=56.35 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=69.2
Q ss_pred EEEEEEEccCCCC-cceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCC---cCcEEEEechHHH
Q psy15599 318 TFFLVKEKMKGKN-KLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDY---SDNYYSVQTTEAE 393 (2347)
Q Consensus 318 t~F~Vk~k~~g~~-~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~---~~~~f~~~T~q~k 393 (2347)
..|.|... .+.+ ...+.+|-|....+.+.+..+..++..||+.+++++++.++.|.++-|.. -.+.|.|.|.+++
T Consensus 116 ~rF~V~v~-Ps~kL~sG~a~Lhl~~~~l~L~~~~~~~~l~~W~L~~LRRYG~~~~~F~FE~grrC~~geG~f~f~t~qge 194 (224)
T 3ml4_A 116 HRFHVTVA-PGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSAEGE 194 (224)
T ss_dssp EEEEEEEC-SSSSSCCEEEEEEEETTEEEEEETTTTEEEEEEEGGGEEEEEEETTEEEEEECGGGGGGCEEEEEECSCHH
T ss_pred ceEEEEec-CccccCCCcEEEEecCCcEEEccCCCccEEEEcchHHhhhhcccCCEeEEecCCcCCCCCCEEEEecCcHH
Confidence 67777653 2222 23568999999999999998888999999999999999999999988744 2468999999999
Q ss_pred HHHHHHHHHH
Q psy15599 394 QIQQLIAGYI 403 (2347)
Q Consensus 394 ~I~~LI~gYi 403 (2347)
+|..++..-+
T Consensus 195 ~I~~lfd~~~ 204 (224)
T 3ml4_A 195 QMSFLFDCIV 204 (224)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998876544
No 86
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.88 E-value=0.093 Score=65.77 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=65.5
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhC---CCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHH
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIG---ITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKM 164 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LG---L~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~ 164 (2347)
..++|+++ +.++++.+++++||.|++..|++++. ..+.+.||||..+.+..
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~------------------------- 57 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPK------------------------- 57 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGG-------------------------
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCC-------------------------
Confidence 46899999 99999999999999999999999997 66889999999765321
Q ss_pred HHHHhhhccCccccccccchhhhhcCCCCCceEEEEEE
Q psy15599 165 EQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRK 202 (2347)
Q Consensus 165 ~~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrK 202 (2347)
...||+..++|..=++..+..+.++++
T Consensus 58 -----------~~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 58 -----------KGIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp -----------GCEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred -----------cCEeccCCCCHHHhCCCCCceeeccCc
Confidence 138999999988777877788888754
No 87
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=93.81 E-value=0.092 Score=62.80 Aligned_cols=52 Identities=29% Similarity=0.359 Sum_probs=48.4
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPE 137 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~ 137 (2347)
+...|+|++.||+.++|.|++.+|+.||+..++.+.++...+.|+||+..++
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~ 81 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSE 81 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGG
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCC
Confidence 4567999999999999999999999999999999999999999999998775
No 88
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.55 E-value=0.14 Score=51.27 Aligned_cols=80 Identities=14% Similarity=0.038 Sum_probs=57.0
Q ss_pred CcceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCc
Q psy15599 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGD 79 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~ 79 (2347)
|+.+.|.|.-.......+++|.|+++|.++-.+|.++...+ ++.--|++...+++.-.|| +..++|.+|++++|.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip----~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~ 80 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP----ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGC 80 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC----TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTC
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC----HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCC
Confidence 66666666654333367899999999999999999987654 4555666643322222254 679999999999998
Q ss_pred ccccc
Q psy15599 80 ELEYR 84 (2347)
Q Consensus 80 ~L~~~ 84 (2347)
.|++.
T Consensus 81 ~l~v~ 85 (95)
T 1v6e_A 81 RIHVI 85 (95)
T ss_dssp EEEEB
T ss_pred EEEEE
Confidence 87764
No 89
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=93.31 E-value=0.37 Score=57.36 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=70.8
Q ss_pred cEEEEEEEccCC----CCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc---CcEEEEec
Q psy15599 317 VTFFLVKEKMKG----KNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS---DNYYSVQT 389 (2347)
Q Consensus 317 ~t~F~Vk~k~~g----~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~---~~~f~~~T 389 (2347)
-..|.|..+.+| ++-..+-.|-+..+.|.+++.+.+.++..|||..|++++..++.|.|+.|-.- .+.|.|+|
T Consensus 158 ~~~~~V~v~~~~~~~~~~L~G~y~l~l~~~~l~L~~~~~~~~~~~wpl~~lRr~G~~~~~F~fEaGR~c~~G~G~f~f~t 237 (264)
T 1qqg_A 158 KEVWQVILKPKGLGQTKNLIGIYRLCLTSKTISFVKLNSEAAAVVLQLMNIRRCGHSENFFFIEVGRSAVTGPGEFWMQV 237 (264)
T ss_dssp SEEEEEEEEEEEHHHHTTCCEEEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEETTEEEEEECTTSTTCSEEEEEEC
T ss_pred cceEEEEEEecccccccCCCCceEEEEeCcEEEEEecCCCcceEEeehhheecccccCcEEEEEecCCCCCCCcEEEEec
Confidence 445777654222 22335678899999999999999999999999999999999999999998553 35899999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc
Q psy15599 390 TEAEQIQQLIAGYIDIILKKKM 411 (2347)
Q Consensus 390 ~q~k~I~~LI~gYi~l~lk~rr 411 (2347)
.+ ..|.+-|-.-|.--|+..+
T Consensus 238 ~~-~~i~~~i~~~i~~~~~~~~ 258 (264)
T 1qqg_A 238 DD-SVVAQNMHETILEAMRAMS 258 (264)
T ss_dssp SC-HHHHHHHHHHHHHHHHGGG
T ss_pred Cc-HHHHHHHHHHHHHHHHHHH
Confidence 99 5566666555555554443
No 90
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.10 E-value=0.17 Score=49.63 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=40.5
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.|..++|+..+|+|.++++..||+++.|+++|+. ++.|.|...
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~-~~~~~Lkh~ 55 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN-PSEYDLKFQ 55 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC-GGGCEEEET
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC-hhhCeEEeC
Confidence 678999999999999999999999999999999994 678888654
No 91
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=93.09 E-value=0.18 Score=51.31 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=54.3
Q ss_pred cceEEEEEEecCC---eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhc-cC
Q psy15599 2 ATLSLKICIVDRN---VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYIL-RN 77 (2347)
Q Consensus 2 ~~~~L~v~~~~~~---~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l-~~ 77 (2347)
+.+.|+|+|.|.. .+.++.+.|+++|.++-..|.++...+ ++.-- |+. .++.++.+++|..|++ ++
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip----p~~QR-li~-----ggkll~D~~TL~~ygI~~~ 90 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP----PVLQQ-WVI-----GQRLARDQETLHSHGVRQN 90 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC----GGGEE-EEE-----TTEEECTTCBTGGGTCCST
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC----HHHEE-Eec-----cCeEccCcCcHHHcCCCCC
Confidence 4689999998876 788999999999999999999887654 12222 331 1235567999999999 48
Q ss_pred Cccccc
Q psy15599 78 GDELEY 83 (2347)
Q Consensus 78 ~~~L~~ 83 (2347)
|+.+++
T Consensus 91 G~t~hL 96 (105)
T 4dbg_A 91 GDSAYL 96 (105)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 887763
No 92
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.10 E-value=0.23 Score=50.00 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=50.1
Q ss_pred eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCcccccc
Q psy15599 15 VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 15 ~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~~L~~~ 84 (2347)
...+++|.|+++|.++-.+|.++...+ ++.--|++...+++.-.|| +..++|.+|++++|++|+..
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip----~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTS----VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCC----TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcC----HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 468899999999999999999987654 3444555544333444476 77999999999999988753
No 93
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=91.93 E-value=2.4 Score=49.62 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=105.1
Q ss_pred hHhHHHHHHhHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhhHHHHHHHHHHHHHHH
Q psy15599 644 PRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATS 723 (2347)
Q Consensus 644 ~rq~ll~AA~~l~~a~~~Ll~~i~e~~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~~~~q~~li~aA~~~a~ats 723 (2347)
.-+.++.|+.+|-.-+. + -.+.. ..|+.+||..+.-...|-.-+++. +..-..||.+|+.+|....
T Consensus 111 ~~~pi~~Aa~~ld~Ev~---K-Wdd~~-----NdII~~AK~MA~mM~~Ms~ftRGg-----~kTt~DLI~~AK~IAe~g~ 176 (283)
T 3vf0_A 111 VNQPILAAAQSLHREAT---K-WSSKG-----NDIIAAAKRMALLMAEMSRLVRGG-----SGTKRALIQCAKDIAKASD 176 (283)
T ss_dssp CCHHHHHHHHHHHHHHH---T-BCCTT-----CHHHHHHHHHHHHHHHHHHHTTCC-----TTHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH---h-hccCC-----ChHHHHHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHH
Confidence 34567777777743222 1 11112 258899999999999988877651 2334689999999999999
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHH--hhhcc---CC------cchHHHHHHHHHHHHHHHHHHHH
Q psy15599 724 QLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAM--CNETC---TD------ENLNKDLTKAAAEVTKTLNQLLN 792 (2347)
Q Consensus 724 ~Lv~~Ak~vA~ti~~p~~qeqLi~Aak~va~at~~Lv~a--a~~~~---~~------~~~~eqL~~Aa~~V~~al~~Ll~ 792 (2347)
.|...++.+|..|.|+.|++.|+..+..+..-..||--. ++... .+ ....++|+..++.+-.++-++|.
T Consensus 177 ~l~k~ar~iA~qCtD~r~K~~LL~~lerIpti~~QLkIls~VKA~~lg~q~~s~~~~~sa~esLIqnAKNLM~aV~~tVk 256 (283)
T 3vf0_A 177 EVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 256 (283)
T ss_dssp HHHHHHHHHHTTBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhhhhHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998543 33332 11 22357899999999999999998
Q ss_pred HhhhcC
Q psy15599 793 HIKVTT 798 (2347)
Q Consensus 793 ~~k~~~ 798 (2347)
.|..+.
T Consensus 257 a~eaAS 262 (283)
T 3vf0_A 257 EAEAAS 262 (283)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 886554
No 94
>3s90_C Talin-1, metavinculin; four-helix bundle, cell adhesion, focal adhesion; 1.97A {Mus musculus}
Probab=91.87 E-value=0.12 Score=42.89 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=25.5
Q ss_pred hhhcccChhhhhHHHHhhhHHHHHHHHHHHHHHhh
Q psy15599 1474 VASNLIHSKQQMTLLDQTKTVAECLLQVLHLIKEA 1508 (2347)
Q Consensus 1474 aas~~~~~~~q~~~~~~sK~v~es~~~L~~~aK~~ 1508 (2347)
|+.+|.||.+|++|+..+|+|++++..||..+|++
T Consensus 6 aS~kt~nP~~K~~Fv~~AkeVa~~Ta~Lv~~ikaL 40 (40)
T 3s90_C 6 ASARTANPTAKRQFVQSAKEVANSTANLVKTIKAL 40 (40)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccCCchhhHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 44589999999999999999999999999999863
No 95
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=91.86 E-value=0.26 Score=49.48 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=54.3
Q ss_pred cceEEEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCc
Q psy15599 2 ATLSLKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGD 79 (2347)
Q Consensus 2 ~~~~L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~ 79 (2347)
+.++|.|.-... +...+++|.|+++|.++-.+|.++...+ ++.--|++.+ +++...+| +.+++|.+|++++|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP----~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gs 88 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC----AGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGL 88 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC----TTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSC
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC----HHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCC
Confidence 345555554322 2478999999999999999999987654 3444455533 22333466 779999999999999
Q ss_pred ccccc
Q psy15599 80 ELEYR 84 (2347)
Q Consensus 80 ~L~~~ 84 (2347)
+|+..
T Consensus 89 tihlv 93 (95)
T 2kjr_A 89 RLHVV 93 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88753
No 96
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=91.72 E-value=0.34 Score=46.01 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=52.3
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|...+...++.|.++.+|.++...|.++...+ +++.-|++ +|+.|..+++|..|++.+|+.+++.
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~----~~~qrL~~------~gk~L~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIP----VANQRLIY------SGKILKDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCC----HHHEEEEE------CCeEcCCCCCHHHcCCCCCCEEEEE
Confidence 444443356678899999999999999999876543 45555555 2456888899999999999888764
No 97
>1t01_B Talin 1; five helix bundle, cell adhesion, structural protein; 2.06A {Mus musculus}
Probab=91.69 E-value=0.15 Score=36.24 Aligned_cols=25 Identities=48% Similarity=0.678 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15599 616 GDELLDAARKLCFAFTDLLKAAQPH 640 (2347)
Q Consensus 616 ~~~L~~aar~La~a~s~ll~~~~p~ 640 (2347)
|..|+++|+.|+++++.|+++.+|.
T Consensus 1 grpllqaakglagavsellrsaqp~ 25 (26)
T 1t01_B 1 GRPLLQAAKGLAGAVSELLRSAQPX 25 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CchHHHHHHHhHHHHHHHHHhcCCC
Confidence 4679999999999999999999984
No 98
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.32 E-value=0.39 Score=48.23 Aligned_cols=79 Identities=22% Similarity=0.200 Sum_probs=58.5
Q ss_pred ceEEEEEEe--cCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccC-CCccccccc-cCCchhhhhccCC
Q psy15599 3 TLSLKICIV--DRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDG-DVKKGVWLE-PGRNLEYYILRNG 78 (2347)
Q Consensus 3 ~~~L~v~~~--~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~-~~~k~~WL~-~~~tL~~y~l~~~ 78 (2347)
++.|.|..+ ..+.....+|.++++|.++..+|...+..+ ++..-|++.+. ++.....|. ..++|.+|++.+|
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip----~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP----VSELLLSYESSKMPGREIELENDLQPLQFYSVENG 84 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC----TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC----hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCC
Confidence 456666554 345677889999999999999999988654 46666777653 244566674 5899999999999
Q ss_pred ccccccc
Q psy15599 79 DELEYRR 85 (2347)
Q Consensus 79 ~~L~~~~ 85 (2347)
+.|+..-
T Consensus 85 ~~I~V~d 91 (97)
T 1wjn_A 85 DCLLVRW 91 (97)
T ss_dssp CEEEEEC
T ss_pred CEEEEEe
Confidence 9887643
No 99
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=90.84 E-value=0.1 Score=40.96 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15599 738 NPACQQQLMAAVKEVANAVEGLVAMCNE 765 (2347)
Q Consensus 738 ~p~~qeqLi~Aak~va~at~~Lv~aa~~ 765 (2347)
||..|+.|+.+|+.|+.+|.+||++++.
T Consensus 1 D~~~q~rLl~aak~vaeata~mVeaak~ 28 (31)
T 1u6h_B 1 DLENSRKLLSAAKILADATAKMVEAAKG 28 (31)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666554
No 100
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=90.58 E-value=0.55 Score=46.17 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=51.5
Q ss_pred eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcc-ccccccCCchhhhhccCCcccccc
Q psy15599 15 VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKK-GVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 15 ~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k-~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
....++|.++++|.++-.+|.++...+ ++.--|++.+.+... +.-|+.+++|.+|++++|..|++.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip----~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATP----PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCC----GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCC----HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 445799999999999999999887654 455567665554433 566778999999999999988864
No 101
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=90.36 E-value=1.6 Score=48.77 Aligned_cols=114 Identities=8% Similarity=0.130 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhHHhhhhcc---cCchhhhhhHHHHHHHHhhhhhHHhhhhhhCCChhhhhHHHHHHhhHHHHHHHHHH
Q psy15599 1636 RMVGSSKEIARISQEMMTKSW---SDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACINTVT 1712 (2347)
Q Consensus 1636 ~m~~~ak~ia~~~~~~~~~a~---~~~~~l~~~~~~~s~~~~~l~~~a~~a~~~~~~~~~~~~i~~~~~~l~~s~~~lv~ 1712 (2347)
.++..||.++..+-.|.-.++ ....+|-+.++.|++.-..+...++.-+..++|+..+..|+...+.+..-|.||..
T Consensus 40 dII~~Ak~Ma~~m~~M~~ftrG~g~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll~~~~rI~t~~~QLkI 119 (188)
T 1qkr_A 40 DIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKI 119 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhhHHHHHHHH
Confidence 688999999999999988887 56889999999999999999999999999999999999999999999999999987
Q ss_pred HHhhcc---C--C----CChhhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15599 1713 MAATCQ---T--S----GDDYTHREFADTNRVLAEKVSQVLYALQA 1749 (2347)
Q Consensus 1713 aa~~~~---~--~----~d~~t~~~l~~~ar~v~e~v~~l~aal~~ 1749 (2347)
.++... | + .|...-..|..++|++-.+|.+++.+-..
T Consensus 120 ls~VKA~~~g~~~~~~~~~~~a~e~LIq~AkNLM~aV~~tVka~~~ 165 (188)
T 1qkr_A 120 LSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEA 165 (188)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544221 1 1 12233568899999999999988877644
No 102
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=89.93 E-value=0.48 Score=49.69 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=53.7
Q ss_pred EEEEEEecCCe--eEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCccc
Q psy15599 5 SLKICIVDRNV--TKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 5 ~L~v~~~~~~~--~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~~L 81 (2347)
.++|+|.-.+. ..+++|.|+++|.++..+|.++...+ ++.--|++...+++.-.+| +.+++|.+|++++|..|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip----~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~i 81 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT----VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC----TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC----HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEE
Confidence 45555544443 67899999999999999999887654 3555566543322222265 67999999999988888
Q ss_pred ccc
Q psy15599 82 EYR 84 (2347)
Q Consensus 82 ~~~ 84 (2347)
++.
T Consensus 82 hvv 84 (122)
T 1t0y_A 82 HAV 84 (122)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 103
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=89.42 E-value=1.2 Score=41.97 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=38.0
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|....+.++.+.|+.++-..|+.+.|++ ++..-|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~ 45 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP-PQQQRLIY 45 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence 578899999999999999999999999999999986 34555654
No 104
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=88.91 E-value=1.3 Score=41.52 Aligned_cols=44 Identities=32% Similarity=0.383 Sum_probs=38.2
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|....+.++.+.|+.++-..|+.+.|++ ++..-|++
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~ 45 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF 45 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence 578899999999999999999999999999999986 34566665
No 105
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=88.91 E-value=0.52 Score=47.59 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=51.5
Q ss_pred cceEEEEEEecCCe-eEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhh--hccCC
Q psy15599 2 ATLSLKICIVDRNV-TKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYY--ILRNG 78 (2347)
Q Consensus 2 ~~~~L~v~~~~~~~-~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y--~l~~~ 78 (2347)
..+.|+|....... ..++.+.|+.+|.++-.+|.++++.. .++++--|++ .|++|+.+++|..| ++.++
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy------~Gk~L~D~~tL~~y~~~I~~~ 93 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVY------SGRLLPDHLQLKDILRKQDEY 93 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEE------TTEEECTTSBTHHHHTTTCSE
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEE------CCEECCCCCCHHHHhcCCCCC
Confidence 34555555544432 45888899999999999999876432 1224444544 37789999999999 98887
Q ss_pred ccccc
Q psy15599 79 DELEY 83 (2347)
Q Consensus 79 ~~L~~ 83 (2347)
..|++
T Consensus 94 ~tihL 98 (99)
T 2kdb_A 94 HMVHL 98 (99)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 77653
No 106
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.76 E-value=1.5 Score=42.70 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=41.3
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+....|.|..++|....+.|+.+.|+.++-..|+.+.|++. +..-|++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~qrL~~ 52 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK-KQQQLEF 52 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT-TTEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh-HHEEEEE
Confidence 455678899999999999999999999999999999999863 4555554
No 107
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=88.51 E-value=0.74 Score=45.77 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=52.4
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
..|+|.+ .+-+.++.++|+.+|+++-..|-++...+ |+.--|.. .|++|+..++|+.|++++|++|++
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip----~~qQrLif------~Gk~LkD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ----PNKIVLQK------GGSVLKDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC----HHHEEEEe------CCEEccCcCCHHHcCCCCCCEEEE
Confidence 4566643 46778899999999999999998886543 44433322 377899999999999999998874
No 108
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.37 E-value=0.89 Score=45.32 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=52.8
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
++|+|...+...++.|.++.+|.++...|.++...+ +++.-|++ +++.|+.+++|..|++.+++.+++..
T Consensus 18 m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip----~~~qrL~~------~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 18 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCN----ADRLVLIF------TGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp EEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSC----TTTBCCEE------TTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred EEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCC----HHHEEEEE------CCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 445554446677899999999999999999986543 34444444 25578889999999999998887654
Q ss_pred c
Q psy15599 86 K 86 (2347)
Q Consensus 86 ~ 86 (2347)
+
T Consensus 88 ~ 88 (96)
T 1wx8_A 88 R 88 (96)
T ss_dssp C
T ss_pred e
Confidence 3
No 109
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=88.28 E-value=1 Score=43.87 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=53.1
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|.. .+.+.++.+.|+.+|.++...|.++...+ +++.-|++ +++.|+.+++|..|++.+++.+++.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip----~~~qrL~~------~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP----PQQQRLIY------SGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGCCEEE------TTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC----HHHEEEEE------CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4555543 34667899999999999999999886543 45555554 3456888999999999999988865
Q ss_pred cc
Q psy15599 85 RK 86 (2347)
Q Consensus 85 ~~ 86 (2347)
-+
T Consensus 83 ~r 84 (88)
T 3dbh_I 83 LR 84 (88)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 110
>1syq_B Talin 1; cytoskeleton, vinculin, cell adhesion; 2.42A {Homo sapiens}
Probab=88.24 E-value=0.47 Score=33.81 Aligned_cols=24 Identities=50% Similarity=0.652 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q psy15599 619 LLDAARKLCFAFTDLLKAAQPHSN 642 (2347)
Q Consensus 619 L~~aar~La~a~s~ll~~~~p~~~ 642 (2347)
|+++++.|+++++.|+++.+|.+.
T Consensus 2 llqaakglagavsellrsaqpasa 25 (26)
T 1syq_B 2 LLQAAKGLAGAVSELLRSAQPASA 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HhHHHhHhHHHHHHHHHhcCcccc
Confidence 789999999999999999999753
No 111
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=88.11 E-value=0.55 Score=44.94 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=53.4
Q ss_pred CcceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcc
Q psy15599 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDE 80 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~ 80 (2347)
|..+.|+|.-.+ +-+.++.+.|+.+|.++...|.++...+ ++..-|++ .|+.|+++++|..|++.+++.
T Consensus 1 m~~m~i~vk~~~-g~~~~~~v~~~~tv~~lk~~i~~~~gi~----~~~qrL~~------~G~~L~d~~tl~~~~i~~~~~ 69 (79)
T 2uyz_B 1 MEYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVP----MNSLRFLF------EGQRIADNHTPKELGMEEEDV 69 (79)
T ss_dssp CCEEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTCCHHHHTCCTTEE
T ss_pred CCeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCCC----cccEEEEE------CCEEeCCCCCHHHcCCCCCCE
Confidence 444444444322 3567899999999999999999986543 45555555 256788899999999999998
Q ss_pred ccccc
Q psy15599 81 LEYRR 85 (2347)
Q Consensus 81 L~~~~ 85 (2347)
+++..
T Consensus 70 i~l~~ 74 (79)
T 2uyz_B 70 IEVYQ 74 (79)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87643
No 112
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=88.03 E-value=0.95 Score=44.43 Aligned_cols=71 Identities=15% Similarity=0.050 Sum_probs=51.4
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
.+.|.|.... +.+.++.|.|+.+|.++...|.++...+ +++--|++ .|+.|+.+++|..|++.+|+.|+
T Consensus 4 ~m~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip----~~~qrL~~------~Gk~L~D~~tL~~~~I~~g~~i~ 72 (88)
T 2hj8_A 4 PLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQ----DDLFWLTF------EGKPLEDQLPLGEYGLKPLSTVF 72 (88)
T ss_dssp EEEEEEEETT-SCEEEEEEESSSBHHHHHHHHHHHTCSC----TTTEEEES------SSSCCCTTSBHHHHHCSTTCEEE
T ss_pred cEEEEEECCC-CCEEEEEECCCCcHHHHHHHHHHHhCCC----hhHEEEEE------CCEECCCCCcHHHcCCCCCCEEE
Confidence 3444444433 3566899999999999999999886543 34444554 24568889999999999998877
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
+.
T Consensus 73 l~ 74 (88)
T 2hj8_A 73 MN 74 (88)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 113
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.95 E-value=0.97 Score=44.01 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=52.9
Q ss_pred cceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccc
Q psy15599 2 ATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 2 ~~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L 81 (2347)
..+.|.|...+ +.+.++.|.++.+|.++...|.++...+ +++.-|++ .++-|.++++|..|++.+++.+
T Consensus 6 ~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~----~~~qrL~~------~Gk~L~d~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 6 SGIQVFVKNPD-GGSYAYAINPNSFILGLKQQIEDQQGLP----KKQQQLEF------QGQVLQDWLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHHHHTCCC----TTTEEEEE------TTEECCSSSBHHHHTCCTTEEE
T ss_pred CCEEEEEEcCC-CCEEEEEeCCCChHHHHHHHHHHHhCCC----hHHEEEEE------CCEEccCCCCHHHCCCCCCCEE
Confidence 44555555533 3567899999999999999999986543 45555554 2456788999999999999887
Q ss_pred ccc
Q psy15599 82 EYR 84 (2347)
Q Consensus 82 ~~~ 84 (2347)
++.
T Consensus 75 ~l~ 77 (87)
T 1wh3_A 75 ILS 77 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 114
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=87.78 E-value=0.79 Score=45.73 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=52.6
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccC-CchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPG-RNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~-~tL~~y~l~~~~~L~ 82 (2347)
..+.|+|...+-+.++.|.|+.+|.++..+|.++...+ +++--|++ .|+.|+.+ ++|..|++.++..|+
T Consensus 14 ~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 14 RKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTP----IKRMQLYY------SGIELADDYRNLNEYGITEFSEIV 83 (94)
T ss_dssp CCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSC----TTTEEEEE------TTEEECCTTSBHHHHTCCTTEEEE
T ss_pred CCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcC----HHHEEEEE------CCEECCCCcccHHHCCCCCCCEEE
Confidence 34566665554478999999999999999999986543 34444544 25678888 999999999988776
Q ss_pred c
Q psy15599 83 Y 83 (2347)
Q Consensus 83 ~ 83 (2347)
+
T Consensus 84 l 84 (94)
T 2kan_A 84 V 84 (94)
T ss_dssp E
T ss_pred E
Confidence 4
No 115
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=87.73 E-value=2.1 Score=46.66 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=59.7
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcCc-EEEEech-HHHHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSDN-YYSVQTT-EAEQIQQLIAGYIDII 406 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~~-~f~~~T~-q~k~I~~LI~gYi~l~ 406 (2347)
+.+++|-|+.+||.++|+.+++++..+|+.+|.-+..++ +.|.....+.... +|.|++. .+..|...|+.=.++.
T Consensus 60 ~~~v~L~IS~~GI~v~d~~tk~~~~~~~l~~ISf~a~d~~d~r~FafI~k~~~~h~f~v~~s~~~A~~I~~tigqAF~~a 139 (152)
T 1ntv_A 60 KQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLI 139 (152)
T ss_dssp CEEEEEEEETTEEEEEETTTCCEEEEECGGGEEEEEECTTCTTEEEEEESSTTCCEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCeEEEEECCCCceEeeeecCcEEEEeCCCCCCcEEEEEEEcCCeEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999997666643 5788777655433 5566765 5788888777766664
Q ss_pred Hh
Q psy15599 407 LK 408 (2347)
Q Consensus 407 lk 408 (2347)
.+
T Consensus 140 y~ 141 (152)
T 1ntv_A 140 YE 141 (152)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 116
>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus gallus}
Probab=87.72 E-value=0.23 Score=37.62 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy15599 862 RLLAAAKNLAEATARMVEAARQCA 885 (2347)
Q Consensus 862 ~Ll~aAk~La~ats~LV~aaK~~a 885 (2347)
.|++++|.|+++|++||+++|..+
T Consensus 2 ~mv~qak~laqat~~Li~~~K~~a 25 (26)
T 1zvz_B 2 EMVRQARILAQATSDLVNAIKADA 25 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999765
No 117
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.68 E-value=0.79 Score=45.49 Aligned_cols=76 Identities=14% Similarity=0.032 Sum_probs=54.0
Q ss_pred CcceEEEEEEecCCe-eEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhh--hccC
Q psy15599 1 MATLSLKICIVDRNV-TKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYY--ILRN 77 (2347)
Q Consensus 1 ~~~~~L~v~~~~~~~-~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y--~l~~ 77 (2347)
|..+.|.|....... +.++.+.++.+|.++-..|.++.+.. -++++.-|++ +|+.|+.+++|..| ++.+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~--i~~~~QrLi~------~Gk~L~D~~tL~~~~~~i~~ 76 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER--PRPEDQRLIY------SGKLLLDHQCLRDLLPKQEK 76 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC--CCTTTCEEEE------TTEECCSSSCHHHHSCSSSC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC--CChHHeEEEE------CCEECcCcCCHHHHhcCCCC
Confidence 445666666644432 55666779999999999999987422 1345555555 36788889999999 9888
Q ss_pred Ccccccc
Q psy15599 78 GDELEYR 84 (2347)
Q Consensus 78 ~~~L~~~ 84 (2347)
+..+++.
T Consensus 77 ~~~i~lv 83 (93)
T 1wgd_A 77 RHVLHLV 83 (93)
T ss_dssp SEEEEEE
T ss_pred CCEEEEE
Confidence 8877754
No 118
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=87.66 E-value=2.1 Score=47.57 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=58.7
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc-----------------------CcEEEEe
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS-----------------------DNYYSVQ 388 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~-----------------------~~~f~~~ 388 (2347)
..++.|-|+.+||.++|+.+++++..+|+.+|.-|.-..+.|.+...+.. ..+|.|.
T Consensus 63 ~~~V~L~IS~~gikv~d~~t~~il~~~~l~~ISf~aD~~~~FayIar~~~~~~~~~~n~~~~~~~~~~~~~~~~~CHVF~ 142 (172)
T 1aqc_A 63 MTEVDLFILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQDGKRQYKMICHVFE 142 (172)
T ss_dssp -CEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEEETTEEEEEECCC----------------------CEEEEEEEE
T ss_pred CcEEEEEEECCeEEEEeCCCCceEeccccceEEEEeeCCcEEEEEecCCCccccccccccccccccccCCCCcEEEEEEE
Confidence 45899999999999999999999999999999888756677777766542 1368888
Q ss_pred chHHHHHHHHHHHHHHH
Q psy15599 389 TTEAEQIQQLIAGYIDI 405 (2347)
Q Consensus 389 T~q~k~I~~LI~gYi~l 405 (2347)
+.++..|..-|+.=.++
T Consensus 143 s~~A~~I~~tIGqAF~~ 159 (172)
T 1aqc_A 143 SEDAQLIAQSIGQAFSV 159 (172)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 88888888777665543
No 119
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=87.55 E-value=1 Score=42.95 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=51.2
Q ss_pred eEEEEEEecCCeeEEEE-ecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQ-FDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~-f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
+.+.|....+....++. +.|+.+|.++...|.++...+ +++.-|++ .|+.|+++++|..|++.+|+.++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip----~~~qrL~~------~g~~L~d~~tL~~~~i~~g~~i~ 72 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE----PGLQRLFY------RGKQMEDGHTLFDYEVRLNDTIQ 72 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTCBTTTTTCCTTCEEE
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC----hhhEEEEE------CCEECCCCCCHHHcCCCCCCEEE
Confidence 44455544443435788 999999999999999876543 45545554 24568889999999999998877
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
+.
T Consensus 73 l~ 74 (78)
T 2faz_A 73 LL 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 120
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=87.39 E-value=2.9 Score=44.64 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=61.1
Q ss_pred CCCCcceeEEEEecCCceEEEeCCccceeeeeeccccceeeee------CceEEEEeCCCc---C--cEEEEechHHHHH
Q psy15599 327 KGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS------SNVFTLDFGDYS---D--NYYSVQTTEAEQI 395 (2347)
Q Consensus 327 ~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~------~~~f~I~~~d~~---~--~~f~~~T~q~k~I 395 (2347)
+|+-|..+++|-|+..+|.++|..|++.+..||++.|....+- ++-+.|.+.+.. . ..|.|..-.+..|
T Consensus 43 kg~iW~Q~m~L~v~~~~v~LlD~et~eelE~fpl~~I~~~~av~~~~~y~siLllv~q~~~~~~~~iH~FQc~ev~A~~v 122 (140)
T 2cy5_A 43 QGRVWAQEMLLRVSPSQVTLLDPVSKEELESYPLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELI 122 (140)
T ss_dssp TTCCCCEEEEEEECSSEEEEECTTTCCEEEEEEGGGEEEEEEECCSSCSSCEEEEEECCTTCSSCEEEEEEECTTHHHHH
T ss_pred cCCcccceeEEEECCCeEEEEccCccchhhcCChhhceeccccCCccccCcEEEEEEecCCCCCccEEEEEeccccHHHH
Confidence 4555667899999999999999999999999999999988542 256777775443 1 2566666678888
Q ss_pred HHHHHHHHHHH
Q psy15599 396 QQLIAGYIDII 406 (2347)
Q Consensus 396 ~~LI~gYi~l~ 406 (2347)
..=|.+++.-+
T Consensus 123 ~~di~~al~~~ 133 (140)
T 2cy5_A 123 REDIQGALQNY 133 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777777444
No 121
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.38 E-value=1.5 Score=41.91 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=51.7
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|.|.... +...++.|.++.+|.++...|.++...+ +++.-|++ +|+-|.++++|..|++.+|+.+++
T Consensus 8 m~i~vk~~~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~----~~~qrL~~------~gk~L~d~~tL~~~~i~~g~~i~l 76 (81)
T 2dzi_A 8 MQLTVKALQ-GRECSLQVPEDELVSTLKQLVSEKLNVP----VRQQRLLF------KGKALADGKRLSDYSIGPNSKLNL 76 (81)
T ss_dssp EEEEEEETT-SCEEEEEECSSCBHHHHHHHHHHHTCCC----TTTCEEEE------TTEECCTTSBGGGGTCCSSBCCEE
T ss_pred EEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcC----HHHEEEEE------CCeECCCCCcHHHcCCCCCCEEEE
Confidence 344444322 4567899999999999999999876543 45555555 255678889999999999998876
Q ss_pred cc
Q psy15599 84 RR 85 (2347)
Q Consensus 84 ~~ 85 (2347)
.-
T Consensus 77 ~~ 78 (81)
T 2dzi_A 77 VV 78 (81)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 122
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=87.34 E-value=2.2 Score=40.66 Aligned_cols=46 Identities=26% Similarity=0.210 Sum_probs=39.3
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...+.|..++|....+.|+++.|+.++-..|+.+.|++. +..-|++
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrL~~ 49 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTF 49 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH-HHEEEEE
Confidence 356889999999999999999999999999999999964 3455554
No 123
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.32 E-value=1.2 Score=45.00 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=52.7
Q ss_pred eEEEEEEecCC---eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccC-CchhhhhccCCc
Q psy15599 4 LSLKICIVDRN---VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPG-RNLEYYILRNGD 79 (2347)
Q Consensus 4 ~~L~v~~~~~~---~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~-~tL~~y~l~~~~ 79 (2347)
+.|.|.....+ .+.++.+.++++|.++...|.++.... +++--|++ .++.|+.+ ++|..|++.+++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip----~~~qrL~~------~gk~L~D~~~tL~~ygI~~g~ 77 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP----AEEAQIVY------MEQLLTDDHCSLGSYGLKDGD 77 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC----GGGBCEEE------TTEEECCSSSBHHHHTCCTTE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC----hHHeEEEE------CCEECCCCcccHHHCCCCCCC
Confidence 45556554332 566799999999999999999886543 45555555 23457665 799999999999
Q ss_pred ccccccc
Q psy15599 80 ELEYRRK 86 (2347)
Q Consensus 80 ~L~~~~~ 86 (2347)
.|++..+
T Consensus 78 ~l~l~~~ 84 (102)
T 1v5o_A 78 MVVLLQK 84 (102)
T ss_dssp EEEECBC
T ss_pred EEEEEEC
Confidence 8876543
No 124
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=87.31 E-value=0.97 Score=42.51 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=51.1
Q ss_pred EEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 8 ICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 8 v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
|+|.. .+.+.++.|.++.+|.++...|.++...+ +++.-|++ +++.|.+.++|..|++.+|+.+++..
T Consensus 3 i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~----~~~q~L~~------~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC----HHHeEEEE------CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 44432 24567899999999999999999876543 45655665 24568888999999999998877543
No 125
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=87.22 E-value=0.96 Score=45.29 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=49.2
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccccc---eeE
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRKM---RTL 90 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~~---r~l 90 (2347)
+.+.++.|.++.+|.++...|.++...+ +++.-|++ .|+.|.+.++|..|++.+|+.+++..+. ..+
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~----~~~qrL~~------~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCC----GGGEEEEE------TTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcC----hhhEEEEE------CCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 3567899999999999999999886543 45555555 2557888999999999999988754332 234
Q ss_pred EEEeCCCcE
Q psy15599 91 KVRMLDGTL 99 (2347)
Q Consensus 91 kV~L~DG~~ 99 (2347)
-+...+|..
T Consensus 80 ~~~~v~~~~ 88 (98)
T 1yx5_B 80 NSSSVDKLA 88 (98)
T ss_dssp ---------
T ss_pred ccccCCCch
Confidence 444444443
No 126
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=87.14 E-value=1 Score=42.27 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=51.3
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|.. .+.+.++.|.++.+|.++...|.++...+ +++.-|++ +|+-|.++++|..|++.+|+.+++..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~----~~~q~L~~------~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP----PQQQRLIY------SGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC----hHHEEEEE------CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 355543 24567899999999999999999876543 45555555 24568889999999999998877543
No 127
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=87.02 E-value=1.2 Score=43.02 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=52.3
Q ss_pred EEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|... +.+.++.+.++.+|.++...|.++...+ +++.-|++ +++.|...++|..|++.+++.+++..
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~----~~~qrL~~------~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC----hHHEEEEE------CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4444332 4667899999999999999999987543 45555554 34578889999999999998887654
Q ss_pred c
Q psy15599 86 K 86 (2347)
Q Consensus 86 ~ 86 (2347)
+
T Consensus 75 r 75 (85)
T 3mtn_B 75 R 75 (85)
T ss_dssp C
T ss_pred E
Confidence 3
No 128
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=87.01 E-value=2.4 Score=45.50 Aligned_cols=75 Identities=15% Similarity=0.325 Sum_probs=60.5
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC-----ceEEEEeCCCcCc-----EEEEechHHHHHHHHHHHH
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS-----NVFTLDFGDYSDN-----YYSVQTTEAEQIQQLIAGY 402 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~-----~~f~I~~~d~~~~-----~f~~~T~q~k~I~~LI~gY 402 (2347)
++.+|-|+..+|.++|+.++..|..||+..|+-|+... +.|.+...+.... .|.|+ ..++.|..-+.++
T Consensus 55 q~~~L~v~~~tlrLvD~~tk~~L~~~pI~~I~f~~~gr~~~~~~dFAfv~rd~~t~~~~CHvFrCe-~~a~~Ia~al~~~ 133 (148)
T 3d8d_A 55 KDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRCE-APAKNIATSLHEI 133 (148)
T ss_dssp CEEEEEEETTEEEEECTTTCCEEEEEEGGGCCEEEECCCC--CCEEEEEEECTTTCCEEEEEEEES-SCHHHHHHHHHHH
T ss_pred ceEEEEEcCCeEEEecCCCCceEEEeeEEEEEEEeCCCCCCccccEEEEEecCCCcceEeEEEEcC-CchHHHHHHHHHH
Confidence 47899999999999999999999999999999999854 2588877554322 46665 5588999999999
Q ss_pred HHHHHh
Q psy15599 403 IDIILK 408 (2347)
Q Consensus 403 i~l~lk 408 (2347)
...+|-
T Consensus 134 c~~~~~ 139 (148)
T 3d8d_A 134 CSKIMA 139 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877763
No 129
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=86.78 E-value=1.3 Score=42.25 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=51.8
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
..|+|.. .+-+.++.+.|+.+|.++-..|.++...+ +++.-|++ .|+.|+.+++|..|++.+|+.+++.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip----~~~qrL~~------~G~~L~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ----DDLFWLTF------EGKPLEDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC----HHHEEEEE------CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 3455533 34667899999999999999998876543 34444444 3556888999999999999988764
Q ss_pred c
Q psy15599 85 R 85 (2347)
Q Consensus 85 ~ 85 (2347)
-
T Consensus 75 ~ 75 (79)
T 3phx_B 75 L 75 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 130
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=86.65 E-value=3.7 Score=43.57 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=60.2
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcC---cEEEEech---HHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSD---NYYSVQTT---EAEQIQQLIAGY 402 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~---~~f~~~T~---q~k~I~~LI~gY 402 (2347)
+.+++|-|+.+||.++|+.+++.+..+|+..|.-|..++ +.|-....+... ..+.|.+. .+..|...|..-
T Consensus 43 ~~~v~L~Vs~~gi~l~d~~~~~~~~~~~i~~Isf~~~d~~~~~~FafI~r~~~~~~~~CHvF~c~~~~~A~~i~~~l~~A 122 (137)
T 3so6_A 43 LQKVTLKVSPRGIILTDSLTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQA 122 (137)
T ss_dssp CEEEEEEEETTEEEEEETTTCCEEEEEEGGGEEEEEECSSSTTEEEEEEECSSSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCeEEEEECCCCcEEEeeccCEEEEEEecCCCCCEEEEEEEcCCCCeEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999998888754 577776654422 24555543 577888777766
Q ss_pred HHHHHh-hhccc
Q psy15599 403 IDIILK-KKMSK 413 (2347)
Q Consensus 403 i~l~lk-~rr~k 413 (2347)
..+..+ ++++|
T Consensus 123 F~~a~~~~q~~~ 134 (137)
T 3so6_A 123 FKVAFEFWQVSL 134 (137)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 655544 44443
No 131
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=86.56 E-value=2.1 Score=47.46 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=58.5
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcC---cEEEEec--hHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSD---NYYSVQT--TEAEQIQQLIAGYI 403 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~---~~f~~~T--~q~k~I~~LI~gYi 403 (2347)
+.++.|-|+..||.++|+++++++..+|+..|.-+...+ +.|-....+... .++.|.+ ..+..|..-|..=.
T Consensus 77 ~~~V~L~VS~~GI~l~d~~t~~~l~~~~i~~ISf~~~d~~~~~~FafIar~~~~~~~~CHvF~c~~~~A~~I~~aIgqAF 156 (168)
T 3f0w_A 77 SVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAF 156 (168)
T ss_dssp CEEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEECSSCTTEEEEEEEETTTTEEEEEEEEESSSCHHHHHHHHHHHH
T ss_pred CcEEEEEEECCEEEEEeCCCCeEEEeeecCcEEEEecCCCCCcEEEEEEecCCCCcEEEEEEEeccchHHHHHHHHHHHH
Confidence 357899999999999999999999999999998888754 577766654322 2444544 33888888777776
Q ss_pred HHHHhhh
Q psy15599 404 DIILKKK 410 (2347)
Q Consensus 404 ~l~lk~r 410 (2347)
.....++
T Consensus 157 ~~a~~~k 163 (168)
T 3f0w_A 157 AACLERK 163 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555443
No 132
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=86.54 E-value=1.3 Score=43.80 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=52.7
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.+|+|.. .+.+.++.+.++.+|.++-..|.++.... +++.-|++ +|+-|..+++|..|++.+|+.+++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrL~~------~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC----hhhEEEEE------CCeECCCcCcHHHCCCCCCCEEEEE
Confidence 4555542 34667899999999999999999887543 34444444 3456888999999999999988765
Q ss_pred cc
Q psy15599 85 RK 86 (2347)
Q Consensus 85 ~~ 86 (2347)
-+
T Consensus 88 ~r 89 (91)
T 3v6c_B 88 LR 89 (91)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 133
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=86.41 E-value=1.7 Score=42.25 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=39.2
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..++|....+.|+++.||.++-..|+.+.|++. +..-|++
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrL~~ 57 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIY 57 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCCEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH-HHEEEEE
Confidence 467889999999999999999999999999999999873 4445554
No 134
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=86.40 E-value=0.64 Score=54.94 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=41.7
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCc
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPED 138 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~ 138 (2347)
..+...|+|++.||+.++|.|+..+|+.||+..+..+-+......|+||+..++.
T Consensus 5 ~~~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l 59 (256)
T 3hk0_A 5 AAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHL 59 (256)
T ss_dssp ---CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTT
T ss_pred CCCceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCc
Confidence 4456789999999999999999999999999999988887778999999998754
No 135
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=86.22 E-value=0.62 Score=50.42 Aligned_cols=46 Identities=9% Similarity=0.260 Sum_probs=40.8
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~ 133 (2347)
+.-.+|+|.|+.+.|.|.+.+|+.+|+..+.+++.+.+ +..|+||.
T Consensus 77 ~~TSfflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV~dnP~kFALye 123 (163)
T 3ddc_B 77 KRTSFYLPLDAIKQMHISSTTTVSEVIQGLLDKFMVVDNPQKFALFK 123 (163)
T ss_dssp ---CEEEEEEEEEEEEEETTCCHHHHHHHHHHHTTCCSCGGGEEEEE
T ss_pred cceeEECCCCceEEEEEccCCcHHHHHHHHHHHhcccCChhheEEEE
Confidence 34569999999999999999999999999999999975 68999999
No 136
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=86.19 E-value=2 Score=40.89 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.7
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+..+.|..++|....+.|++++|+.++...++.+.|++. +..-|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~-~~qrL~~~ 49 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-NSLRFLFE 49 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEET
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc-ccEEEEEC
Confidence 357889999999999999999999999999999999964 35555543
No 137
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=86.04 E-value=1.3 Score=45.89 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=55.9
Q ss_pred cceEEEEEEec---------CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhh
Q psy15599 2 ATLSLKICIVD---------RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEY 72 (2347)
Q Consensus 2 ~~~~L~v~~~~---------~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~ 72 (2347)
+.+.|+|.++. .+-+.++.|.++.+|.++...|.++...+ ++.--|++ .|+-|+.+++|..
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrL~~------~Gk~L~D~~tL~~ 93 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMP----AGKQKLQY------EGIFIKDSNSLAY 93 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCC----TTTEEEEE------TTEEECTTSBHHH
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCC----hHHEEEEE------CCEECCCCCCHHH
Confidence 56788888875 24578899999999999999999986543 34444554 2456788899999
Q ss_pred hhccCCcccccc
Q psy15599 73 YILRNGDELEYR 84 (2347)
Q Consensus 73 y~l~~~~~L~~~ 84 (2347)
|++.++..+++.
T Consensus 94 y~i~~g~~i~lv 105 (115)
T 1we7_A 94 YNMASGAVIHLA 105 (115)
T ss_dssp HTCCSSCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 999999887653
No 138
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=85.80 E-value=2 Score=42.96 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=41.1
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+....|.|..++|....+.|+.++|+.++...|+.+.||+. +.+-|++.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~-~~qrLif~ 67 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-NSLRFLFE 67 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEET
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh-hhEEEEEC
Confidence 34567889999999999999999999999999999999964 35556553
No 139
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.43 E-value=1.1 Score=47.11 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=51.5
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
++|+|...+...++.|.++.+|.++...|.++.... +++.-|++ +|+.|+.+++|..|++.+|+.|++..
T Consensus 33 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQ----TDQLVLIF------AGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp EEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSC----SSSEEEEE------TTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcC----cceEEEEE------CCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 344443346677899999999999999999987543 34444444 25568889999999999888877543
No 140
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.37 E-value=2.8 Score=39.90 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=39.9
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+....+.|..++|....+.|+.+.|+.++-..|+.+.|++. +..-|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~qrL~~ 52 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV-RQQRLLF 52 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT-TTCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-HHEEEEE
Confidence 34567888889999999999999999999999999999864 4455554
No 141
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=85.37 E-value=0.96 Score=43.71 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=51.4
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|.. .+.+.++.+.|+.+|.++...|.++...+ +++.-|++ +++.|...++|..|++.+++.+++..
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip----~~~qrL~~------~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 5 RIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp EEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC----HHHEEEEE------CCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 344432 23567899999999999999999887543 45555555 34568889999999999998887543
No 142
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=85.20 E-value=1.2 Score=44.29 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=52.4
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
++|+|.. +.+.++.|.|+.+|.++...|.++...+ +++.-|++ .++-|++.++|..|++.+++.|++..
T Consensus 20 m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 20 MQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIA----PEDQVVLL------AGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCC----GGGCEEEE------TTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred EEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcC----hhHEEEEE------CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 4566655 5677899999999999999999886543 34545554 24568889999999999998887643
No 143
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=85.20 E-value=3.3 Score=42.49 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=39.6
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..++|....+.|+.+.||.++-..|+.+.|++. +..-|++
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~ 80 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 80 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT-TTEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc-ccEEEEE
Confidence 4567889999999999999999999999999999999864 3455554
No 144
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.97 E-value=1.8 Score=42.37 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=50.3
Q ss_pred EEEEEEec--CCeeEEE-EecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccc
Q psy15599 5 SLKICIVD--RNVTKTM-QFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 5 ~L~v~~~~--~~~~kt~-~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L 81 (2347)
..+|+|.. ...+.++ .|.|+.+|.++...|.++...+ +++.-|++ .++-|..+++|..|++.+++.+
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip----~~~qrL~~------~gk~L~d~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR----PECQRLFY------RGKQLENGYTLFDYDVGLNDII 76 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC----TTTEEEEE------TTEECCSSSBHHHHTCCTTCEE
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC----hhhEEEEE------CCeECCCCCCHHHCCCCCCCEE
Confidence 34555533 3246788 5999999999999999876543 34444554 2456788999999999998887
Q ss_pred ccc
Q psy15599 82 EYR 84 (2347)
Q Consensus 82 ~~~ 84 (2347)
++.
T Consensus 77 ~l~ 79 (89)
T 1wy8_A 77 QLL 79 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 145
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=84.95 E-value=1.8 Score=41.81 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=51.0
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcC-cccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKIS-EANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~-~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
+.|.|...+ +...++.|.++.+|.++...|.+++. .. -++++.-|++ .|+.|+.+++|..|++.+|+.++
T Consensus 6 m~i~vk~~~-g~~~~~~v~~~~TV~~lK~~i~~~~~~~g--ip~~~qrLi~------~Gk~L~D~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 6 VTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDA--FPVAGQKLIY------AGKILSDDVPIRDYRIDEKNFVV 76 (85)
T ss_dssp EEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHCTTT--CCGGGEEEEE------TTEECCTTSBGGGGCCCTTSEEE
T ss_pred EEEEEEECC-CCEEEEEECCCCCHHHHHHHHHhhccccC--CCHHHeEEEE------CCEECcCCCCHHHcCCCCCCEEE
Confidence 444444432 45668999999999999999999742 11 1345555554 25678889999999999998887
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
+.
T Consensus 77 l~ 78 (85)
T 2wyq_A 77 VM 78 (85)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 146
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=84.85 E-value=1.3 Score=44.84 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=50.2
Q ss_pred EEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 7 KICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 7 ~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+|+|...+...++.|.++.+|.++...|.++...+ +++--|++ +|+-|.+.++|..|++.+|+.+++.
T Consensus 27 ~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 27 KVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSH----TDQLVLIF------AGKILKDQDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp EEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCC----GGGEEEEE------TTEEECTTCCTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcC----hhhEEEEE------CCEECCCcCcHHHcCCCCCCEEEEE
Confidence 34443335677899999999999999999876543 34444444 2456788899999999998887654
No 147
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.77 E-value=1.4 Score=44.93 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=49.5
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|...+-..++.|.++.+|.++..+|.++.... +.+.-|++ +++.|+.+++|..|++.++..|++.
T Consensus 18 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH----PDQLVLIF------AGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp EEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCC----TTTEEEEE------TTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcC----hhhEEEEE------CCEECCCcCcHHHcCCCCCCEEEEE
Confidence 344443333235899999999999999999876543 34444444 2456888999999999988877754
No 148
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=84.76 E-value=4.3 Score=44.67 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=60.8
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCc------CcEEEEechHHHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS------DNYYSVQTTEAEQIQQLIAGYIDI 405 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~------~~~f~~~T~q~k~I~~LI~gYi~l 405 (2347)
+.++.|-|+.+||.++++++++++..+++.+|.-+....+.|.....+.. ..++.|.+..+..|..-|+.=..+
T Consensus 52 ~~~V~L~IS~~gIkv~d~~t~~~i~~~~l~~ISf~a~~~~~f~fIar~~~~~~~~~~~CHVF~~~~A~~I~~tigqAF~~ 131 (162)
T 4dbb_A 52 MTEVDLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQYKMICHVFESEDAQLIAQSIGQAFSV 131 (162)
T ss_dssp CEEEEEEEESSEEEEEETTTCCEEEEEEGGGEEEEEEETTEEEEEEEECCSTTCEEEEEEEEECTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCEEEEEECCCCcEEeeeecceeEEEEECCCEEEEEeccCCCCCCCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999888877788877665432 136788887788888877666655
Q ss_pred HH
Q psy15599 406 IL 407 (2347)
Q Consensus 406 ~l 407 (2347)
..
T Consensus 132 ay 133 (162)
T 4dbb_A 132 AY 133 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 149
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=84.57 E-value=1.5 Score=44.17 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=50.4
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|...+-..++.|.++.+|.++...|.++...+ +++--|++ +|+.|+..++|..|++.+++.+++.
T Consensus 23 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH----PDQLVLIF------AGKILKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp EEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred EEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcC----hhhEEEEE------CCEECCCcCcHHHCCCCCCCEEEEE
Confidence 455554443345899999999999999999876543 34444544 2556888999999999998887654
No 150
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=84.54 E-value=1.2 Score=44.63 Aligned_cols=71 Identities=7% Similarity=0.112 Sum_probs=54.4
Q ss_pred EEEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 5 SLKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 5 ~L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
.++|+|... +-+.++.+.|+.+|.++...|.++...+ ++..-|++ .|+.|...++|..|++..++.|++
T Consensus 21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip----~~~qrLif------~Gk~L~d~~tl~dy~i~~g~~I~l 90 (97)
T 1wyw_B 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP----MNSLRFLF------EGQRIADNHTPKELGMEEEDVIEV 90 (97)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTCCHHHHTCCTTCEEEE
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC----hhhEEEEE------CCeEcCCCCCHHHCCCCCCCEEEE
Confidence 356666443 4667899999999999999999987653 45555555 256788999999999999998876
Q ss_pred cc
Q psy15599 84 RR 85 (2347)
Q Consensus 84 ~~ 85 (2347)
.-
T Consensus 91 ~~ 92 (97)
T 1wyw_B 91 YQ 92 (97)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 151
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=84.44 E-value=2.9 Score=41.13 Aligned_cols=47 Identities=32% Similarity=0.326 Sum_probs=39.2
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..++|....+.|+.+.||.++-..|+.+.|+.. +..-|++
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~ 62 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 62 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh-hhEEEEE
Confidence 3457889999999999999999999999999999999864 3345554
No 152
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.41 E-value=1.3 Score=43.96 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=50.2
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccC-CchhhhhccCCccc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPG-RNLEYYILRNGDEL 81 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~-~tL~~y~l~~~~~L 81 (2347)
.+.|.|... .+...++.|.++.+|.++..+|.++. +.+.-|++ +|+.|+.+ ++|..|++.+|+.|
T Consensus 7 ~m~i~Vk~~-~g~~~~~~v~~~~TV~~LK~~i~~~~-------~~~qrLi~------~Gk~L~D~~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 7 GINVRLKFL-NDTEELAVARPEDTVGTLKSKYFPGQ-------ESQMKLIY------QGRLLQDPARTLSSLNITNNCVI 72 (95)
T ss_dssp SEEEEEEET-TTEEEEEEECSSSBHHHHHHHHSSST-------TTTCEEEE------TTEECCCSSCBTTTTTCCTTEEE
T ss_pred eEEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHhhC-------cCcEEEEE------CCEEccCCcCCHHHcCCCCCCEE
Confidence 444555432 34567899999999999999888765 23444444 36688888 99999999999887
Q ss_pred cccc
Q psy15599 82 EYRR 85 (2347)
Q Consensus 82 ~~~~ 85 (2347)
++..
T Consensus 73 ~l~~ 76 (95)
T 1wia_A 73 HCHR 76 (95)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7643
No 153
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=83.97 E-value=3.1 Score=40.01 Aligned_cols=45 Identities=31% Similarity=0.363 Sum_probs=38.4
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..+.|..++|....+.|+++.||.++-..|+.+.|++. +.+-|++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~qrL~~ 48 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 48 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-HHEEEEE
Confidence 56889999999999999999999999999999999864 3445554
No 154
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=83.95 E-value=3.2 Score=41.10 Aligned_cols=45 Identities=31% Similarity=0.363 Sum_probs=38.0
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..|.|..++|....+.|+.+.||.++-..|+.+.|++. +..-|++
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~-~~qrL~~ 46 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 46 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh-hHEEEEE
Confidence 35789999999999999999999999999999999864 3445554
No 155
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=83.94 E-value=3.4 Score=46.00 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=57.6
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCC------cC--cEEEEech-HHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDY------SD--NYYSVQTT-EAEQIQQLI 399 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~------~~--~~f~~~T~-q~k~I~~LI 399 (2347)
+.++.|-|+.+||.++|+.+++++..+|+.+|.-|...+ +.|-+...+. .+ .++.|.+. .+..|..-|
T Consensus 69 ~~~V~L~VS~~gI~l~d~~tk~~i~~~~i~~ISfca~d~~d~r~FafIar~~~~~~~~~~~~~CHVF~~~~~A~~I~~tI 148 (175)
T 2ela_A 69 MTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDSV 148 (175)
T ss_dssp CEEEEEEECSSEEEEECTTTCCEEEEEEGGGEEEEEEETTEEEEEEEEEEEC-------CEEEEEEEEESSCHHHHHHHH
T ss_pred CCEEEEEEECCeEEEEeCCCCcEEEEeecCEEEEEEeCCCCCcEEEEEEecCccccCCCcceEEEEEEcchhHHHHHHHH
Confidence 347899999999999999999999999999999998876 4677776554 22 36777766 577777777
Q ss_pred HHHHHHH
Q psy15599 400 AGYIDII 406 (2347)
Q Consensus 400 ~gYi~l~ 406 (2347)
+.=.++.
T Consensus 149 gqAF~~a 155 (175)
T 2ela_A 149 GLAKQIA 155 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 156
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=83.94 E-value=3.1 Score=45.71 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=58.1
Q ss_pred eeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCC------c--CcEEEEech-HHHHHHHHHH
Q psy15599 333 VPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDY------S--DNYYSVQTT-EAEQIQQLIA 400 (2347)
Q Consensus 333 ~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~------~--~~~f~~~T~-q~k~I~~LI~ 400 (2347)
.++.|-|+.+||.++|+.+++++..||+.+|.-|...+ +.|-+...+. . ..++.|.+. .+..|..-|+
T Consensus 57 ~~v~L~VS~~gi~l~d~~tk~~~~~~~i~~ISfca~d~~~~r~FafIar~~~~~~~~~~~~~CHVF~~~~~A~~I~~tig 136 (160)
T 2ej8_A 57 TESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDSVG 136 (160)
T ss_dssp CEEEEEEESSEEEEECTTTCCEEEEEEGGGEEEEEEETTEEEEEEEEEEECC------CEEEEEEEEESSCHHHHHHHHH
T ss_pred CEEEEEEECCeEEEEeCCCCeEEEEeeCCeEEEEEecCCCCeEEEEEEecCCcccCCCccEEEEEEEcchhHHHHHHHHH
Confidence 46899999999999999999999999999999998876 4677766553 2 236777766 5788887776
Q ss_pred HHHHHHH
Q psy15599 401 GYIDIIL 407 (2347)
Q Consensus 401 gYi~l~l 407 (2347)
.=.++..
T Consensus 137 qAF~~ay 143 (160)
T 2ej8_A 137 LAKQIAL 143 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 157
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=83.90 E-value=3.7 Score=38.63 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=37.2
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..+.|.. +|...++.|+.+.|+.++-..|+...|++ ++..-|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP-VANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEEE
Confidence 5677887 89999999999999999999999999986 44556654
No 158
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=83.80 E-value=1.6 Score=52.32 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=47.4
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPE 137 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~ 137 (2347)
+...++|+++||..+++.|++.+|+.||+..|+.+.++.....|+||...++
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~ 84 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPE 84 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETT
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccc
Confidence 4567999999999999999999999999999999999988888999988664
No 159
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=83.69 E-value=1.8 Score=42.17 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=51.7
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccc-cccCCchhhhhccCCccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVW-LEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~W-L~~~~tL~~y~l~~~~~L~~ 83 (2347)
.+|+|.. .+-+.++.|.|+.+|.++-..|.++...+ +++--|++ +|+. |+.+++|..|++.+|+.+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP----VSKQTLIV------DGIVILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCCSSSBHHHHTCCTTSCEEE
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC----hHHEEEEE------CCEEecCCcCCHHHcCCCCCCEEEE
Confidence 4677743 34667899999999999999999986543 45545554 2456 78899999999999988764
No 160
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.69 E-value=0.76 Score=46.87 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=54.9
Q ss_pred EEEEE-ecCCeeEEEEecCCCcHHHHHHHHHhhcCcccC-----------CCccccccccccCCCccccccc-cCCchhh
Q psy15599 6 LKICI-VDRNVTKTMQFDPSTSVYDACRIIRDKISEANF-----------GEAKDYGLFLSDGDVKKGVWLE-PGRNLEY 72 (2347)
Q Consensus 6 L~v~~-~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~-----------~~~~dyglf~~~~~~~k~~WL~-~~~tL~~ 72 (2347)
.+|+| .-.+.+.++.+.|+.+|.++-..|.++...+.. ..|..|-|.. .|.-|. .+++|..
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~------~Gk~L~dD~~tL~d 81 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS------AGEKLTEDRKKLRD 81 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES------SSCEECCSSSBHHH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe------CCcCccCCcCCHHH
Confidence 45666 334577899999999999999999998754310 1245565554 234565 5799999
Q ss_pred hhccCCccccccccc
Q psy15599 73 YILRNGDELEYRRKM 87 (2347)
Q Consensus 73 y~l~~~~~L~~~~~~ 87 (2347)
|++++|+.|+|....
T Consensus 82 ygI~~g~~l~lv~~l 96 (105)
T 1v2y_A 82 YGIRNRDEVSFIKKL 96 (105)
T ss_dssp HTCCSSEEEEEEECS
T ss_pred cCCCCCCEEEEEehh
Confidence 999999999986653
No 161
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=83.67 E-value=2 Score=44.59 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=60.3
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhcc-------CC
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILR-------NG 78 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~-------~~ 78 (2347)
+-|+|...+.+.++.+.|+.+|.++-.+|.++...+ +++--|+. .|+.|+.+++|..|++. .+
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP----~~qQrLi~------~Gk~LeD~~TLsdy~I~~~~a~~q~~ 72 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP----PEEQRLYK------DDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC----HHHeEEEE------CCeECCCCCCHHHcCcccccccCCCC
Confidence 445555566778999999999999999999886543 45545554 24578999999999998 34
Q ss_pred ccccccccceeEEEEeCCCcEEEEEEcCCC
Q psy15599 79 DELEYRRKMRTLKVRMLDGTLKTLLVDDSQ 108 (2347)
Q Consensus 79 ~~L~~~~~~r~lkV~L~DG~~~~v~Vd~st 108 (2347)
..|+ +.++ .||.+-.+.|++-.
T Consensus 73 stL~-------L~lr-~~g~fe~l~i~~~s 94 (118)
T 2fnj_B 73 ATVG-------LAFR-ADDTFEALRIEPFS 94 (118)
T ss_dssp EEEE-------EEEB-SSSCBCCCCBCCCC
T ss_pred CEEE-------EEec-CCCceeeeEEecCC
Confidence 4443 2233 67877777776543
No 162
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=83.61 E-value=3.3 Score=45.42 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=57.9
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC---ceEEEEeCCCcC-cEEEEech-HHHHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS---NVFTLDFGDYSD-NYYSVQTT-EAEQIQQLIAGYIDII 406 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~---~~f~I~~~d~~~-~~f~~~T~-q~k~I~~LI~gYi~l~ 406 (2347)
+.++.|-|+..||.++|+++++++..||+.+|.-+..++ +.|-....+... .+|.|++. .+..|...|+.=.++.
T Consensus 59 ~~~V~L~IS~~GI~v~d~~tk~~~~~~~l~~ISfca~d~~d~r~FafI~k~~~~h~c~vf~s~~~A~~I~~tigqAF~~a 138 (160)
T 1p3r_A 59 KQRIWVNISLSGIKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFGYVCGGEGQHQFFAIKTGQQAEPLVVDLKDLFQVI 138 (160)
T ss_dssp CEEEEEEEETTEEEEEETTTCCEEEEECGGGEEEEEECTTCTTEEEEEESSTTCEEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCeEEEEECCCCeEEEecccCeEEEEecCCCCCcEEEEEEecCCEEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999997766654 568777765532 25667764 4677777776665544
Q ss_pred Hh
Q psy15599 407 LK 408 (2347)
Q Consensus 407 lk 408 (2347)
.+
T Consensus 139 y~ 140 (160)
T 1p3r_A 139 YN 140 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 163
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=83.55 E-value=1.9 Score=42.32 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=49.5
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|... +.+.++.+.++.+|.++..+|.++.... +++.-|++ +|+.|+.+++|..|++ .|+.+++.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip----~~~qrLi~------~Gk~L~d~~tL~~~~i-~g~~i~l~ 74 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP----SEKQRLIY------QGRVLQDDKKLQEYNV-GGKVIHLV 74 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC----HHHEEEEE------CCeECCCCCCHHHcCC-CCcEEEEE
Confidence 44555433 4667899999999999999999886543 34444444 3567888999999999 77777653
No 164
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=83.54 E-value=4 Score=39.92 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=40.1
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+....|.|..++|....+.|+.+.||.++-..|+.+.|+.. +..-|++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrLi~ 50 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS-EKQRLIY 50 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG-GGEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEE
Confidence 34567899999999999999999999999999999999854 3345554
No 165
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.51 E-value=1.7 Score=43.93 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=54.4
Q ss_pred cceEEEEEEecC---CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCC
Q psy15599 2 ATLSLKICIVDR---NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNG 78 (2347)
Q Consensus 2 ~~~~L~v~~~~~---~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~ 78 (2347)
+.-.|+|++++. +-..++.+.|+.+|.++-..|.++...+ ++..-|-+ .|+.|+.+++|+.|++.++
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip----~~qQrLI~------~GKiL~D~~TL~~y~I~~g 83 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ----ENYIKIVI------NKKQLQLGKTLEEQGVAHN 83 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC----STTCEEEE------TTEECCTTSBHHHHTCCSS
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC----HHHeEEEe------CCeECCCCCcHHHcCCCCC
Confidence 345788888662 4677899999999999999999987654 22222222 2678899999999999998
Q ss_pred ccccc
Q psy15599 79 DELEY 83 (2347)
Q Consensus 79 ~~L~~ 83 (2347)
..+..
T Consensus 84 sti~v 88 (100)
T 1wju_A 84 VKAMV 88 (100)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87753
No 166
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=83.51 E-value=28 Score=39.53 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=72.9
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy15599 822 ASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTV 901 (2347)
Q Consensus 822 ~~~~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~~~~Ll~aAk~La~ats~LV~aaK~~a~~p~d~~~q~~L~~AA 901 (2347)
+..+|...|.+.|-|--.+.+||.-.-........++.+.+++..+..|-++-..+|-++|.+|-+=-++.+-+.+.+.+
T Consensus 128 ~nQPP~iFVahsK~VIlsAHKLVfIGDTL~r~~~~~dvr~~Vl~~sn~Lc~~LK~~VlATK~AAl~YPS~~AlQeMvd~v 207 (229)
T 3t6g_B 128 TNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVATTKAAALQYPSPSAAQDMVERV 207 (229)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred cCCCchhhHhcCCEEEEEeeeeeeecchHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44678899999999999999999655555555566788999999999999999999999999998877888888888888
Q ss_pred HHHHhh
Q psy15599 902 EELRQA 907 (2347)
Q Consensus 902 e~L~~A 907 (2347)
+.|..-
T Consensus 208 ~eLs~~ 213 (229)
T 3t6g_B 208 KELGHS 213 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887644
No 167
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=83.45 E-value=1.8 Score=42.30 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=51.8
Q ss_pred EEEEEEecCCeeEEEE-ecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccc-cCCchhhhhccCCcccc
Q psy15599 5 SLKICIVDRNVTKTMQ-FDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLE-PGRNLEYYILRNGDELE 82 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~-f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~-~~~tL~~y~l~~~~~L~ 82 (2347)
.|+|...++ ...+. |.++.+|.++...|.++.+.. +..+-|... + |.|..-+. .+++|..|++.+|+.|+
T Consensus 2 ~i~vr~~~G--~~~v~~l~~~~Tv~~Lk~~I~~~~gi~----~~~qrL~~~-~-p~k~l~l~~~~~tL~~~gl~~g~~l~ 73 (86)
T 2kzr_A 2 RVRCKAKGG--THLLQGLSSRTRLRELQGQIAAITGIA----PGSQRILVG-Y-PPECLDLSDRDITLGDLPIQSGDMLI 73 (86)
T ss_dssp CEEEEETTE--EEEECSCCTTCBHHHHHHHHHHHTCCC----TTTCCCEES-S-CCCCCCCCCSSCBTTTSSCCTTCEEE
T ss_pred EEEEEcCCC--CEEeeecCCCCCHHHHHHHHHHHhCCC----ccceEEEeC-C-CCcccccCCCCCCHHHcCCCCCCEEE
Confidence 355555443 45688 999999999999999987643 355555542 2 33333234 68899999999999988
Q ss_pred cccc
Q psy15599 83 YRRK 86 (2347)
Q Consensus 83 ~~~~ 86 (2347)
+...
T Consensus 74 v~~~ 77 (86)
T 2kzr_A 74 VEED 77 (86)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 7654
No 168
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=83.43 E-value=3.5 Score=42.36 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=39.9
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..++|....+.|+++.||.++-..|+.+.|++. +..-|++
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~ 80 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 80 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh-HHEEEEE
Confidence 3567889999999999999999999999999999999863 4455554
No 169
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=83.42 E-value=3.5 Score=41.18 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=37.7
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.|.|..++|....+.|+.+.|+.++-..|+...|++. +..-|++
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~-~~qrL~~ 45 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 45 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCG-GGEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEE
Confidence 5789999999999999999999999999999999863 4555554
No 170
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=83.33 E-value=1.6 Score=43.79 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=52.0
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.|.|... .+.+.++.+.++.+|.++-..|.++...+ +++.-|++ +|+.|...++|..|++.+|+.+++.
T Consensus 24 ~I~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 24 QIFVKTL-TGKTITLEVESSDTIDNVKSKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp EEEEEET-TCCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCTTCBSGGGTCCTTEEEEEE
T ss_pred EEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHhCCC----hhHEEEEE------CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 3444433 34567899999999999999999987643 45544554 3456888999999999999888765
Q ss_pred cc
Q psy15599 85 RK 86 (2347)
Q Consensus 85 ~~ 86 (2347)
-+
T Consensus 93 ~r 94 (98)
T 4hcn_B 93 LR 94 (98)
T ss_dssp CB
T ss_pred Ee
Confidence 43
No 171
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.24 E-value=2.1 Score=42.68 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=49.6
Q ss_pred EEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcC-cccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 7 KICIVDR-NVTKTMQFDPSTSVYDACRIIRDKIS-EANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 7 ~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~-~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+|+|... +...++.|.++.+|.++...|.++++ .. -++++.-|++ +|+.|+.+++|..|++.+|+.+++
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g--ip~~~qrLi~------~Gk~L~D~~tL~~ygI~~g~~i~l 72 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA--FPVAGQKLIY------AGKILNDDTALKEYKIDEKNFVVV 72 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT--CCTTTEEEEE------TTEECCTTSBGGGGTCCSSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC--CChhhEEEEE------CCEECCCcCcHHHCCCCCCCEEEE
Confidence 3445332 45668999999999999999998743 11 1244445554 256788899999999999887764
No 172
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=83.15 E-value=1.9 Score=42.25 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|.. .+.+.++.+.|+.+|.++-..|.++...+ +++.-|++ +|+.|+.+++|..|++.+|+.+++.-
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP----PQQQRLIY------SGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC----hhHEEEEE------CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 345532 34567899999999999999998886543 34444444 35678889999999999998877654
Q ss_pred c
Q psy15599 86 K 86 (2347)
Q Consensus 86 ~ 86 (2347)
+
T Consensus 72 r 72 (88)
T 4fbj_B 72 A 72 (88)
T ss_dssp B
T ss_pred E
Confidence 3
No 173
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=83.05 E-value=1.1 Score=56.22 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=53.0
Q ss_pred EEEEEEe-----cCCeeEEEEecCCCcHHHHHHHHH--hhcCcccCCCccccccccccCCCccccccccCCchhhhh
Q psy15599 5 SLKICIV-----DRNVTKTMQFDPSTSVYDACRIIR--DKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 5 ~L~v~~~-----~~~~~kt~~f~~~~~v~~~~~~i~--e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
-|||+.. =.+..|+++|+++++|.+|+..|. .++... +..+.-|||++.....+..+||.+.++|.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~-i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~ 98 (392)
T 4eku_A 23 ILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPN-IRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQ 98 (392)
T ss_dssp EEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSS-CCCGGGEEEEEEESSSCCEEEECTTSBHHHHH
T ss_pred eEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCC-cCccceEEEEEEECCCCceEECCCCCcHHHHH
Confidence 3788773 224789999999999999999998 465432 23567899999766556789999988887654
No 174
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.05 E-value=1.7 Score=43.96 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=51.7
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|..+ +-+.++.+.|+.+|.++-..|.++...+ +++--|.. .|+.|+++++|..|++.++..|++
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip----~~qQrLi~------~Gk~L~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR----WNKIVLKK------WYTIFKDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCSSCBHHHHTCCTTEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC----HHHEEEEE------CCEECCCCCCHHHcCCCCCCEEEE
Confidence 45666444 5677899999999999999999986543 45544443 156788899999999999988765
No 175
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.89 E-value=1 Score=45.94 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=50.7
Q ss_pred cceEEEEEEecC--CeeEEEEecC---------CCcHHHHHHHHHhhcCcccCCCccc-cccccccCCCccccccccCCc
Q psy15599 2 ATLSLKICIVDR--NVTKTMQFDP---------STSVYDACRIIRDKISEANFGEAKD-YGLFLSDGDVKKGVWLEPGRN 69 (2347)
Q Consensus 2 ~~~~L~v~~~~~--~~~kt~~f~~---------~~~v~~~~~~i~e~~~~~~~~~~~d-yglf~~~~~~~k~~WL~~~~t 69 (2347)
..|.|.|..... .-+.++.|.+ +.+|.++...|.++.+.. -++.+ .-|++ +|+.|+..++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g--ip~~~~qrLi~------~Gk~L~D~~t 82 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES--VPDPELIDLIY------CGRKLKDDQT 82 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT--CCCSSSEEEEE------TTEECCTTCB
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC--CChhhcEEEEE------CCeECCCCCc
Confidence 345555555333 1356788555 599999999999987422 12344 44444 3567888999
Q ss_pred hhhhhccCCcccccc
Q psy15599 70 LEYYILRNGDELEYR 84 (2347)
Q Consensus 70 L~~y~l~~~~~L~~~ 84 (2347)
|..|++.++..+++.
T Consensus 83 L~~y~i~~g~~i~lv 97 (107)
T 1x1m_A 83 LDFYGIQPGSTVHVL 97 (107)
T ss_dssp HHHHTCCTTCEEEEE
T ss_pred HHHcCCCCCCEEEEE
Confidence 999999999887764
No 176
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.52 E-value=2.8 Score=42.31 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=38.8
Q ss_pred ceeEEEEeCC----CcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLD----GTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~D----G~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.-+++|++++ +...++.|+++.||.++-..|+.+.|++ ++..-|.+
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip-~~qQrLI~ 64 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ-ENYIKIVI 64 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC-STTCEEEE
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC-HHHeEEEe
Confidence 3479999999 7789999999999999999999999985 45555544
No 177
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=82.52 E-value=2 Score=42.61 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=50.8
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+|+|.. .+.+.++.+.++.+|.++...|.++...+ +++.-|++ +++.|..+++|..|++.+++.+++.
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip----~~~qrL~~------~G~~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC----hhHEEEEE------CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 345533 24667899999999999999999987543 45555554 3456888999999999999887754
No 178
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=82.32 E-value=0.98 Score=54.71 Aligned_cols=67 Identities=13% Similarity=0.279 Sum_probs=55.5
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhh
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
.+.++|++.|+ ..+++.|++.+++.+++..+.+++... +..-||||..+. .....||.+.+.+....
T Consensus 17 ~~~~~V~lldg-t~~~~~vd~~tt~~el~~~v~~~l~L~---e~~~FgL~~~~~-~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 17 QGHCKVSLLDD-TVYECVVEKHAKGQDLLKRVCEHLNLL---EEDYFGLAIWDN-ATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CCEEEEECTTS-CEEEEECCTTCBHHHHHHHHHHHHTCS---SGGGEEEEEEEE-TTEEEECCTTSBHHHHC
T ss_pred eEEEEEEccCC-CEEEEEECCCCCHHHHHHHHHHHcCCC---CcceeEEEEEcC-CCccchhccchhHHHhc
Confidence 46788988776 678999999999999999999999876 568899998765 34568999988887654
No 179
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=82.23 E-value=2.8 Score=40.35 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=38.4
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..+.|..++|....+.|+++.||.++-..|+.+.|++. +.+-|++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~-~~qrL~~ 48 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 48 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEE
Confidence 46889999999999999999999999999999999865 3455554
No 180
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=82.08 E-value=2.2 Score=43.86 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=53.0
Q ss_pred ceEEEEEEec--CCeeEEEEecC-CCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCc
Q psy15599 3 TLSLKICIVD--RNVTKTMQFDP-STSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 3 ~~~L~v~~~~--~~~~kt~~f~~-~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
.+.|.|.... .+...++.|.| +.+|.++-..|.++...+ +++--|++ .+.-|+..++|.+|++.+|+
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip----~~~QrL~~------~Gk~L~D~~tL~~y~I~~g~ 96 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP----ANKQKLSG------KAGFLKDNMSLAHYNVGAGE 96 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC----TTTSEEEC------SSSBCCTTSBTTTTTCSSSC
T ss_pred cEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC----HHHeEEEE------CCEECCCCCcHHHCCCCCCC
Confidence 4556665542 34566799998 999999999999986543 34444554 24467889999999999998
Q ss_pred cccccc
Q psy15599 80 ELEYRR 85 (2347)
Q Consensus 80 ~L~~~~ 85 (2347)
.|++.-
T Consensus 97 ~l~l~~ 102 (111)
T 1we6_A 97 ILTLSL 102 (111)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 877543
No 181
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=81.99 E-value=3.8 Score=41.79 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=51.2
Q ss_pred EEEEecCCeeEEEEec-CCCcHHHHHHHHHhhcCcccCCCccccccccccCC-----Ccc-ccc---cccCCchhhhhcc
Q psy15599 7 KICIVDRNVTKTMQFD-PSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGD-----VKK-GVW---LEPGRNLEYYILR 76 (2347)
Q Consensus 7 ~v~~~~~~~~kt~~f~-~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~-----~~k-~~W---L~~~~tL~~y~l~ 76 (2347)
.|+|...+-...+.++ |+.+|.++...|.++++.+ ++..-|++.... +.. ... ++++++|..|++.
T Consensus 9 ~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip----~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 9 MLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIP----IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp EEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCC----TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred EEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcC----cccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 3455334434478999 9999999999999988754 344445442220 100 022 5779999999999
Q ss_pred CCcccccccc
Q psy15599 77 NGDELEYRRK 86 (2347)
Q Consensus 77 ~~~~L~~~~~ 86 (2347)
+|+.|++...
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999887643
No 182
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=81.75 E-value=1.6 Score=44.52 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=50.9
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|.. .+...++.|.++.+|.++-.+|.++.... +++--|++ +|+.|+.+++|..|++.+|+.+++.-
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE----ESQIKLIY------SGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC----GGGCEEEE------TTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC----hhhEEEEE------CCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 344433 34667899999999999999999987543 34444444 35678889999999999998877643
No 183
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=81.34 E-value=3.8 Score=41.01 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=39.1
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
......|.|..++|....+.|+.+.||.++-..|+.+.|++. +..-|++
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~ 67 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIF 67 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGCEEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh-hHEEEEE
Confidence 334567889999999999999999999999999999999864 3345554
No 184
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.99 E-value=6.2 Score=38.42 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=38.8
Q ss_pred cceeEEEEeCCC-cEEEE-EEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDG-TLKTL-LVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG-~~~~v-~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..++| ...++ .|+.+.||.++-..|+.+.|++ ++..-|++
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip-~~~qrL~~ 54 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR-PECQRLFY 54 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC-TTTEEEEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 446788999999 68999 5999999999999999999986 34555554
No 185
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.87 E-value=2.4 Score=43.18 Aligned_cols=69 Identities=9% Similarity=0.049 Sum_probs=50.8
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|.. .+.+.++.|.++.+|.++...|.++.... +...-|++ .|+.|..+++|..|++.+|+.|++.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE----PGSQRWFF------SGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC----STTCEEEE------TTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC----cccEEEEE------CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 3444432 24667899999999999999999876543 34444554 2567888999999999999887754
No 186
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=80.58 E-value=2.9 Score=40.80 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=49.5
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|... +.+.++.+.|+.+|.++-..|.++...+ +++--|++ +|+-|..+++|..|++ +|+.+++.
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP----SEKQRLIY------QGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC----HHHEEEEE------CCEECCCCCcHHHcCC-CCcEEEEE
Confidence 45555443 5667899999999999999999886543 34444443 3567888999999999 78777653
No 187
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.48 E-value=2 Score=51.69 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=53.8
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhh
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
++.++|++.|+ +..+.+++.+++.+++..|.+++... +..-||||..+. .....||.+.+.+...+
T Consensus 1 ~i~~~V~l~d~--~~~~~v~~~tt~~el~~~v~~~l~L~---e~~~FgL~~~~~-~~~~~wLd~~~~l~~q~ 66 (294)
T 1ef1_A 1 TISVRVTTMDA--ELEFAIQPNTTGKQLFDQVVKTIGLR---EVWFFGLQYQDT-KGFSTWLKLNKKVTAQD 66 (294)
T ss_dssp CEEEEEEETTE--EEEEEECTTCBHHHHHHHHHHHHTCC---CGGGEEEEEEBT-TSCEEECCSSSBGGGSC
T ss_pred CEEEEEEECCc--eEEEEECCCCcHHHHHHHHHHHcCCC---CcceeEEEEECC-CCceeecccccCHHhhc
Confidence 47899999875 46799999999999999999998875 567899999764 34568999988876654
No 188
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=80.45 E-value=4.6 Score=39.49 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=39.0
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+...+.|..++|....+.|+++.|+.++-..|+...|++. +..-|++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~ 54 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP-DQQRLIF 54 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG-GGCEEEE
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-hhEEEEE
Confidence 3457889999999999999999999999999999999863 4555655
No 189
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.07 E-value=1.7 Score=44.27 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=35.4
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~ 125 (2347)
...|.|..++|...++.|+++.||.++-..|..+.|++.
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~ 45 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQ 45 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 367889999999999999999999999999999998753
No 190
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.00 E-value=3.4 Score=40.63 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=48.2
Q ss_pred EEEEEecCC---eeEEE-EecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccc
Q psy15599 6 LKICIVDRN---VTKTM-QFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 6 L~v~~~~~~---~~kt~-~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L 81 (2347)
.+|.|.... ..-++ .+.|+.+|.++-..|.++.+.- +++.--|.+ ..+|.-|+.+++|..|++.++..|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i---~~~~QrL~~----~~~Gk~L~D~~tL~~y~i~~~stl 83 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQW---YPARQSLRL----DPKGKSLKDEDVLQKLPVGTTATL 83 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSS---CTTTCCEES----STTSCCCCTTCBTTTSSCCSEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCC---ChHHeEEEe----cCCCcCcCCCCCHHHcCCCCCCEE
Confidence 455554442 22357 8999999999999998843211 122323333 234667888999999999999888
Q ss_pred ccc
Q psy15599 82 EYR 84 (2347)
Q Consensus 82 ~~~ 84 (2347)
+|+
T Consensus 84 ~~K 86 (88)
T 2dzj_A 84 YFR 86 (88)
T ss_dssp EEC
T ss_pred EEE
Confidence 764
No 191
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=79.98 E-value=4.6 Score=39.52 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=37.4
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|...++.|+++.||.++-..|+.+.|++. +..-|++
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~ 45 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIY 45 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGCEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-hHEEEEE
Confidence 5788999999999999999999999999999999864 3445554
No 192
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=79.77 E-value=6.2 Score=38.34 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=42.0
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
...+..+.|..++|...++.|+++.|+.++-..|..+.|++ ++..-|++.
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~~ 56 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP-VSKQTLIVD 56 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEEET
T ss_pred ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEEC
Confidence 34577899999999999999999999999999999999985 445556553
No 193
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.73 E-value=1.1 Score=45.33 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=52.1
Q ss_pred EEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 6 LKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
++|+|...+...++.+.++.+|.++-..|.++...+ +++--|++ +|+-|+..++|..|++.+|+.+++..
T Consensus 29 i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 29 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIP----VANQRLIY------SGKILKDDQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCC----STTCCEEE------TTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcC----hHHEEEEE------CCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 445554466667899999999999999998887543 34444444 35678889999999999998877643
No 194
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=79.70 E-value=2.8 Score=43.11 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=52.1
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
++|+|.. .+.+.++.+.|+.+|.++...|.++...+ +...-|++ +++.|...++|..|++.+++.+++.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC----hHHEEEEE------CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 4555543 34567899999999999999999887543 45555554 3456888999999999999887765
Q ss_pred c
Q psy15599 85 R 85 (2347)
Q Consensus 85 ~ 85 (2347)
-
T Consensus 106 ~ 106 (111)
T 3vdz_A 106 L 106 (111)
T ss_dssp E
T ss_pred E
Confidence 4
No 195
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=79.58 E-value=3.1 Score=40.75 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=51.3
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
.|+|.. .+.+.++.|.++.+|.++...|.++...+ ++..-|++ +|+-|.+.++|..|++.+++.+++..
T Consensus 11 ~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrL~~------~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 11 QLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp EEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC----hhhEEEEE------CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 455533 34667899999999999999999887543 34444554 24568889999999999998877543
No 196
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=79.07 E-value=5.9 Score=37.46 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=37.3
Q ss_pred eeEEEEeCCCcEE-EEE-EcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLK-TLL-VDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~-~v~-Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..+.|..++|... ++. |+.+.|+.++-..|+.+.|++ ++..-|++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~~ 49 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLFY 49 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 4678889999875 898 999999999999999999986 34555554
No 197
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=79.03 E-value=8 Score=37.15 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHh---CCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKI---GITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~L---GL~~~e~FsL~~ 133 (2347)
|....+.|..++|....+.|+.+.||.++-..|+.++ |++ ++..-|++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip-~~~qrLi~ 53 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP-VAGQKLIY 53 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC-GGGEEEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC-HHHeEEEE
Confidence 4556788999999999999999999999999999984 454 45555654
No 198
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.88 E-value=2 Score=56.70 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=54.2
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYIL 75 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l 75 (2347)
.+.++|++.|+ +..+.|++.+++.++|..|..++... ++.-||||+.+. .....||.+.+++...++
T Consensus 4 ~i~v~V~llDg--t~e~~vd~~tt~~ell~~V~~~LgL~---e~~~FGL~~~d~-~~~~~WLd~~k~i~~q~~ 70 (575)
T 2i1j_A 4 SMNVRVTTMDA--ELEFAIQQTTTGKQLFDQVVKTIGLR---EVWFFGLQYTDS-KGDLTWIKLYKKVMQQDV 70 (575)
T ss_dssp EEEEEEECSSC--EEEEEEETTCBHHHHHHHHHHHHTCC---CGGGEEEEEEBT-TSCEEECCTTSBGGGSCB
T ss_pred eEEEEEEeCCC--eEEEEECCCCCHHHHHHHHHHHcCCC---CccceeEEEEec-CcchhHhhccccHHHhcc
Confidence 47889999875 45699999999999999999998775 568899999765 344679999888766543
No 199
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=78.88 E-value=7.3 Score=37.85 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=40.2
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+....+.|..++|....+.|+++.||.++-..|+.+.|++. +..-|++
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrLi~ 62 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS-EKQRLIY 62 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG-GGEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEE
Confidence 44567899999999999999999999999999999999864 3445554
No 200
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.72 E-value=3.5 Score=40.63 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=49.5
Q ss_pred EEEEEecCCeeEEEEecCC-----CcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccccc-CCchhhhhccCCc
Q psy15599 6 LKICIVDRNVTKTMQFDPS-----TSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEP-GRNLEYYILRNGD 79 (2347)
Q Consensus 6 L~v~~~~~~~~kt~~f~~~-----~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~-~~tL~~y~l~~~~ 79 (2347)
++|+|...+-..++.|.++ .+|.++...|.++...+ +..--|++ +|+.|.. .++|..|++.++.
T Consensus 8 ~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip----~~~qrL~~------~Gk~L~D~~~~L~~~~i~~g~ 77 (92)
T 1wxv_A 8 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP----QSFQKLIF------KGKSLKEMETPLSALGIQDGC 77 (92)
T ss_dssp EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC----TTTCEEEE------TTEEECCSSSBHHHHTCCSSE
T ss_pred EEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC----HHHEEEEE------CCeecCCCcccHHHCCCCCCC
Confidence 4445543456678999996 99999999999876543 34444544 2556776 6789999998888
Q ss_pred ccccc
Q psy15599 80 ELEYR 84 (2347)
Q Consensus 80 ~L~~~ 84 (2347)
.|++.
T Consensus 78 ~i~l~ 82 (92)
T 1wxv_A 78 RVMLI 82 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
No 201
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=78.63 E-value=3.2 Score=40.43 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 13 RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 13 ~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
.+...++.|.++.+|.++...|.++...+ +++--|+. +|+.|+..++|..|++.+|+.+++
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrL~~------~Gk~L~D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVL----PRGQKLIF------KGKVLVETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCC----TTTCEEEE------TTEECCTTCBTTTTTCCTTEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcC----hHHEEEEE------CCeECCCcCCHHHCCCCCCCEEEE
Confidence 55677899999999999999998876543 34444443 256788899999999998887764
No 202
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=78.50 E-value=1.2 Score=55.78 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=53.4
Q ss_pred EEEEEEecC---CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhh
Q psy15599 5 SLKICIVDR---NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEY 72 (2347)
Q Consensus 5 ~L~v~~~~~---~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~ 72 (2347)
.|+|++.++ +..+++.|++.+++.++|..+.+++... ...-||||..+......+||.+++.|..
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~---~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK---NVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS---CGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC---eEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 467778665 3489999999999999999999999874 5688999997654456789999888754
No 203
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.41 E-value=2.9 Score=43.26 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=55.3
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
.+++||.+...+...++-|.++.+|.++-..+-+++..+ .+.--|-+ .|+-|+...+|..|++.+|..++
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP----~e~qrLIy------~GKiLKD~eTL~~~gIk~g~TIh 84 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP----HSVLQIRY------SGKILKNNETLVQHGVKPQEIVQ 84 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC----TTTEEEEE------TTEEECSSCCHHHHSCCSSCEEE
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC----hHHEEEEE------CCeEcCCcchHHHcCCCCCCEEE
Confidence 467888876566778999999999999999988887544 12211222 36789999999999999999888
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
+.
T Consensus 85 Lv 86 (118)
T 2daf_A 85 VE 86 (118)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 204
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=77.87 E-value=3.6 Score=42.64 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=58.3
Q ss_pred EEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccC-------Ccc
Q psy15599 8 ICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRN-------GDE 80 (2347)
Q Consensus 8 v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~-------~~~ 80 (2347)
|.|...+.+.++.+.|+.+|.++-.+|.++...+ ++.--|+. .|+.|+.+++|..|++.+ ++.
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP----p~qQrLI~------~Gk~LeD~kTL~dy~I~~~ta~~q~~at 74 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP----PDEQRLYK------DDQLLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTSBTTTTTCCGGGSBTTBCEE
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC----HHHeEEEe------CCeECCCcCCHHHcCCCcCcccCCCCCE
Confidence 4556677888999999999999999998886543 34444543 357899999999999988 555
Q ss_pred ccccccceeEEEEeCCCcEEEEEEcC
Q psy15599 81 LEYRRKMRTLKVRMLDGTLKTLLVDD 106 (2347)
Q Consensus 81 L~~~~~~r~lkV~L~DG~~~~v~Vd~ 106 (2347)
|++. ++ .||.+-.+.|.+
T Consensus 75 l~Lv-------lr-~~~~fE~l~i~p 92 (118)
T 4ajy_B 75 VGLA-------FR-ADDTFEALCIEP 92 (118)
T ss_dssp EEEE-------EC-CSSCCCCCCBCC
T ss_pred EEEE-------Ee-cCCCccceEEec
Confidence 5432 22 367666665543
No 205
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=77.70 E-value=3.2 Score=40.15 Aligned_cols=75 Identities=7% Similarity=0.150 Sum_probs=53.0
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
|-|||+- .+-.+.+.++++.++.++...|.++++.+ ...+.+++... |++..-+.++.+|..+++..|+.|++
T Consensus 5 m~lRvrs--~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~----~~~~~l~~~~~-p~~~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQS--PDGVKRITATKRETAATFLKKVAKEFGFQ----NNGFSVYINRN-KTGEITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEEC--SSEEEECCCCSSCCHHHHHHHHHHHTCCC----TTTCCCCCSCC-GGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEEC--CCCCEEEEcCCcChHHHHHHHHHHHcCCC----CCcceEEecCC-CCCcccCCCCCCHHHcCCCCCCEEEE
Confidence 4455554 44466688999999999999999999865 24455666333 43443344788999999999999988
Q ss_pred cc
Q psy15599 84 RR 85 (2347)
Q Consensus 84 ~~ 85 (2347)
.|
T Consensus 78 ~~ 79 (80)
T 2pjh_A 78 FP 79 (80)
T ss_dssp --
T ss_pred ec
Confidence 76
No 206
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=77.66 E-value=3.4 Score=42.38 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=51.6
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|...+ +...++.|.++.+|.++...|.++...+ ++..-|++ +++.|...++|..|++.+++.+++
T Consensus 36 m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~~gI~~gs~I~l 104 (111)
T 2ojr_A 36 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp EEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCC----TTTEEEEE------TTEECCSSCBTTTTTCCTTCEEEE
T ss_pred EEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcC----cccEEEEE------CCEECCCCCcHHHcCCCCCCEEEE
Confidence 444444322 4566899999999999999999887543 44544554 245688899999999999988876
Q ss_pred cc
Q psy15599 84 RR 85 (2347)
Q Consensus 84 ~~ 85 (2347)
..
T Consensus 105 ~~ 106 (111)
T 2ojr_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 207
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=77.39 E-value=8.2 Score=36.34 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=39.9
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+..|+|.-.+|....+.|..+++...++...|++.|+.. ..+.|++.
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~fd 47 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFD 47 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT-TTCEEEET
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-ceEEEEEC
Confidence 357899999999999999999999999999999999965 34555543
No 208
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.45 E-value=6.7 Score=39.82 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=39.0
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..++|....+.|+.+.|+.++-..|+.+.|+. ++..-|++
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 68 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE-PGSQRWFF 68 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC-STTCEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC-cccEEEEE
Confidence 46788999999999999999999999999999999985 34455554
No 209
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=75.87 E-value=8.4 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=37.2
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.-.|.|+||||+...-.+..+.|+.+|...|.. .+. ....|.|+..
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~-~~~~f~L~t~ 52 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGF-PWDEYKLLST 52 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTC-CTTTEEEECS
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCC-CCCCeEEEeC
Confidence 346889999999999999999999999999886 443 4567777643
No 210
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=75.59 E-value=4.4 Score=44.80 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=49.5
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRK 86 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~ 86 (2347)
+.+.++.+.++.+|.++-.+|.++...+ +++.-|++ .|+.|+.+++|..|++++|+.+++.-+
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip----~~~q~L~~------~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGCCEEE------TTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCC----ceeEEEEE------CCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 4667899999999999999999886543 45555555 256788899999999999999887544
No 211
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=75.57 E-value=8.5 Score=38.13 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=41.2
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.+..|+|...+|..+.+.|..++++..|+...|++.||.. ..+.|++.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~-~~~rf~Fd 51 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFD 51 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS-TTEEEEET
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-ccEEEEEC
Confidence 45678999999999999999999999999999999999965 44555553
No 212
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=75.09 E-value=7.8 Score=38.62 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=40.8
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.+..|+|.-.+|..+.+.|..++++..|+..+|++.||.. ..+-|++.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~Fd 53 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFD 53 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEET
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc-ccEEEEEC
Confidence 45678999999999999999999999999999999999965 34555443
No 213
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.67 E-value=6.3 Score=39.24 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=48.2
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|.. .+.+.++.|.++.+|.++..+|.++...+ ++.--|++ ++.-| .+.+|..|++.++..|++
T Consensus 18 ~~i~Vk~--~g~~~~i~v~~~~TV~~LK~~I~~~tgip----~~~QrL~~------~Gk~L-dd~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 18 VDLKIIW--NKTKHDVKVPLDSTGSELKQKIHSITGLP----PAMQKVMY------KGLVP-EDKTLREIKVTSGAKIMV 84 (95)
T ss_dssp EEEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCSC----STTCCCBS------SSBCC-SSSBHHHHCCCTTEEEEE
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcC----HHHeEEEE------CCeeC-CcCcHHHCCCCCCCEEEE
Confidence 4455553 45677899999999999999999987654 34444554 23346 445999999988877665
Q ss_pred c
Q psy15599 84 R 84 (2347)
Q Consensus 84 ~ 84 (2347)
.
T Consensus 85 v 85 (95)
T 1v86_A 85 V 85 (95)
T ss_dssp C
T ss_pred E
Confidence 3
No 214
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=74.23 E-value=74 Score=37.99 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=5.7
Q ss_pred CchhhHHHHHH
Q psy15599 1789 NDTFADHRENI 1799 (2347)
Q Consensus 1789 ~~~f~d~~~~i 1799 (2347)
+..|+---+.|
T Consensus 158 GrGFaVVA~eI 168 (309)
T 2ch7_A 158 GRGFAVVADEI 168 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 44787544433
No 215
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=74.08 E-value=14 Score=37.90 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=40.4
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
..-.|.|+||||+.+.-.+..+.|+.+|..-|....+.. ...|.|+...+
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~-~~~f~L~t~fP 61 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT-YGNFSLATMFP 61 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS-SCSCEEECSSS
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC-CCceEEEcCCC
Confidence 345689999999999999999999999999999887653 35677765433
No 216
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=74.07 E-value=8.2 Score=41.29 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=37.2
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|...++.|+++.|+.++-..|+.+.|++. +..-|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~L~~ 45 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 45 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-HHeEEEE
Confidence 5788889999999999999999999999999999863 3444544
No 217
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.78 E-value=5.4 Score=40.27 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=49.8
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
++.++|.+ .+-+.++.++++.+|.++-.+|.++...+. +-... +|| +. +. |+.+++|..|++++|..|+
T Consensus 9 m~~~~vk~--~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp--~~QkL-i~~----~~-gk-L~D~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 9 MLDFRVEY--RDRNVDVVLEDTCTVGEIKQILENELQIPV--SKMLL-KGW----KT-GD-VEDSTVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEEEEC--SSCEEEEEEETTSBHHHHHHHHHHHHCCCT--TTCCE-ECC----SS-SC-CCTTSBHHHHCCCSEEEEE
T ss_pred eEEEEEEe--CCeEEEEEECCCCcHHHHHHHHHHHHCCCh--hHeEE-Ecc----CC-CC-CCCcCCHHHcCCCCCCEEE
Confidence 34555555 455668999999999999999999877651 21222 345 21 23 6788999999998888776
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
+.
T Consensus 78 lv 79 (100)
T 2dzm_A 78 VL 79 (100)
T ss_dssp EC
T ss_pred EE
Confidence 53
No 218
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=73.53 E-value=8.7 Score=37.48 Aligned_cols=46 Identities=26% Similarity=0.210 Sum_probs=38.3
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..++|....+.|+++.|+.++-..|+.+.|++. +..-|++
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~ 49 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTF 49 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT-TTEEEES
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh-hHEEEEE
Confidence 356889999999999999999999999999999999864 3444544
No 219
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=73.14 E-value=12 Score=37.82 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=43.9
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
...++||++|.++.++++....++.+|+..+.++++..+ +++-|....-.+|
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~-e~l~Lv~v~ssGE 60 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAE-EDLALVAITFSGE 60 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCG-GGEEEEEECSSCC
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCc-cceEEEEEccCCc
Confidence 456899999999999999999999999999999998653 3677877765544
No 220
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=72.99 E-value=5.3 Score=43.45 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=51.7
Q ss_pred EEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 7 KICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 7 ~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.|+|... +-+.++.+.|+.+|.++-..|.++...+ +++.-|++ .|+.|+.+++|..|++.+|+.+++.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip----~~~q~L~~------~G~~L~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ----DDLFWLTF------EGKPLEDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC----GGGEEEEE------TTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC----HHHEEEEE------CCeecCCCCCHHHcCCCCCCEEEEE
Confidence 3555333 4677899999999999999998876543 45555554 3567888999999999999988764
No 221
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=72.59 E-value=11 Score=37.30 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=41.0
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..+..|+|.-.+|..+.+.|..+++...|+...|++.||... .+.|++.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~-~~rf~fd 63 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-QIRFRFD 63 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGG-GEEEEET
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCcc-ceEEEEC
Confidence 456789999999999999999999999999999999999643 4555443
No 222
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=72.35 E-value=12 Score=37.48 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=39.3
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+....|.|..++|+ ..+.|+.+.|+.++-..|+.+.|++ ++..-|++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~ 66 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF 66 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 445567889999997 5899999999999999999999986 45555655
No 223
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=72.07 E-value=3.6 Score=50.11 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=53.2
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhh
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYI 74 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~ 74 (2347)
.+.++|++.|+ +..+.+++.+++.+++..|.+++... +..-||||.. ......||.+.+.+...+
T Consensus 22 ~~~~~V~lldg--~~~~~v~~~t~~~el~~~v~~~l~L~---e~~~FgL~~~--~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 22 TFTVRIVTMDA--EMEFNCEMKWKGKDLFDLVCRTLGLR---ETWFFGLQYT--IKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp EEEEEEECSSC--EEEEEEETTCBHHHHHHHHHHHHTCC---CGGGEEEEEE--ETTEEEECCTTSBGGGSS
T ss_pred eeEEEEEeCCc--eEEEEeCCCCcHHHHHHHHHHHhCCC---CCccceEEEE--eCCcCeeCCCccCHHHcC
Confidence 46788888776 56699999999999999999998775 5688999986 344578999988877654
No 224
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=71.50 E-value=9 Score=40.24 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.0
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcc-cCCCc--cccccccccCCCccccccccCCchhhhhccCCc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEA-NFGEA--KDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~-~~~~~--~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
.+.|+|...++.....+.|.|+.+|.++-..|.+..+.. +..++ ++--|.. .|+.|+.+++|..|.+..++
T Consensus 16 ~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy------~GK~LeD~~TLsdy~I~~~~ 89 (126)
T 1se9_A 16 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS------AGKVLENSKTVKDYRSPVSN 89 (126)
T ss_dssp CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE------TTEECCTTSBGGGGSCCTTS
T ss_pred cEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE------CCeECcCCCcHHHcCCCcCC
Confidence 356777777666666799999999999999998765422 10111 1111111 36789999999999998774
Q ss_pred c
Q psy15599 80 E 80 (2347)
Q Consensus 80 ~ 80 (2347)
.
T Consensus 90 ~ 90 (126)
T 1se9_A 90 L 90 (126)
T ss_dssp C
T ss_pred c
Confidence 3
No 225
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.47 E-value=12 Score=38.14 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=41.2
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.+..|+|...+|..+.+.|..++++..|+..+|++.||... .+-|++.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~-~~rf~Fd 70 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-QIRFRFD 70 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTT-TSCEESS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcc-eEEEEEC
Confidence 356789999999999999999999999999999999999643 4555443
No 226
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=71.19 E-value=6 Score=38.53 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=35.6
Q ss_pred eEEEEeCCCcEEEEE-EcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLL-VDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~-Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.|+|++++|... +. ++.+.|+.++...|+.+.||. ++.+.|.+.
T Consensus 2 ~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~~~ 46 (86)
T 2kzr_A 2 RVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA-PGSQRILVG 46 (86)
T ss_dssp CEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCEES
T ss_pred EEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC-ccceEEEeC
Confidence 578999999654 77 999999999999999999986 344556543
No 227
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=71.03 E-value=4.8 Score=41.53 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=50.4
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
.+|+|... +.+.++.|.|+.+|.++...|.++...+ ++.--|++ .++.|...++|..|++.+++.|++.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~qrLi~------~Gk~L~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----PDQQRLIW------AGKQLEDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC----GGGEEEEE------TTEECCTTCBTTTTTCCSSCEEEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC----hHHEEEEE------CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 35555332 4677899999999999999999876543 34444444 2456888999999999988877643
No 228
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=70.86 E-value=8.6 Score=40.36 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=39.0
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
....-.|.|+||||..+.-.+..+.|+.+|...|... |.. ...|.|+..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~-~~~F~L~t~ 88 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP-NERFELLTN 88 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC-TTTEEEECS
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC-CCCeEEecC
Confidence 3445679999999999999999999999999999776 542 355777654
No 229
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.75 E-value=12 Score=37.76 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=37.6
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..++|. ..+.|+.+.||.++-..|+.+.||. .+..-|++
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 61 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF 61 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC-TTTEEEEE
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 3467888888887 5899999999999999999999986 34555654
No 230
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=70.36 E-value=7.8 Score=38.66 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=50.2
Q ss_pred ceEEEEEEecCCeeE-EEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccc
Q psy15599 3 TLSLKICIVDRNVTK-TMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~k-t~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L 81 (2347)
++.|+|.+ .+.+. .+.+.++.+|.++-..|.++.... ++.--|++ +|.-|..+ +|..|++.+++.|
T Consensus 7 ~m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip----~~~QkLi~------~Gk~L~D~-tL~~~~I~~g~~i 73 (96)
T 1wgg_A 7 GYSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQ----PARQKVMV------KGGTLKDD-DWGNIKMKNGMTV 73 (96)
T ss_dssp EEEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCC----TTTSCCEE------TTEECCSS-CCCSCCCCSSCEE
T ss_pred EEEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcC----HHHeEEEE------CCcCCCCC-CHHHCCCCCCCEE
Confidence 44555554 45666 599999999999999999986544 34444443 34567777 9999999998877
Q ss_pred ccc
Q psy15599 82 EYR 84 (2347)
Q Consensus 82 ~~~ 84 (2347)
++.
T Consensus 74 ~l~ 76 (96)
T 1wgg_A 74 LMM 76 (96)
T ss_dssp ECC
T ss_pred EEE
Confidence 764
No 231
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=70.22 E-value=18 Score=34.66 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=41.3
Q ss_pred ccceeEEEEeCCCc-EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGT-LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~-~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+.+..|+|...+|. .+.+.|..+++...|+...|++.|+... .+.|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~-~~rf~fd 54 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGH-KLSFFFD 54 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTC-CCEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcc-cEEEEEC
Confidence 45678999999996 8999999999999999999999999754 4555543
No 232
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.91 E-value=16 Score=36.20 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHh---CCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKI---GITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~L---GL~~~e~FsL~~ 133 (2347)
.|.|..++|...++.|+.+.||.++-..|+..+ |++ ++..-|++
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip-~~~qrLi~ 48 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP-VAGQKLIY 48 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC-TTTEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC-hhhEEEEE
Confidence 578889999999999999999999999999995 454 44555654
No 233
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=69.09 E-value=6.8 Score=43.34 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=51.3
Q ss_pred EEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 8 ICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 8 v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
|+|.. .+-+.++.+.|+.+|.++-..|.++...+ +++--|++ .|+.|+.+++|..|++++|+.+++.-
T Consensus 3 I~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC----TTTEEEEE------TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC----HHHEEEEE------CCccccCcCcHHHcCCCCCCEEEEEE
Confidence 44432 34567899999999999999999887643 34444544 35568889999999999999888653
No 234
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=69.00 E-value=9.8 Score=37.57 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=42.9
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+|....|+|||||++.-.|.|-+..|+.|.+...+++=|| .++....|..
T Consensus 14 ~~~~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L-~pe~C~Vy~~ 63 (95)
T 2l05_A 14 SPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL-IPECCAVYRI 63 (95)
T ss_dssp CCCSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC-CGGGEEEEEE
T ss_pred CCCccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC-CHHHcEEEEc
Confidence 4556789999999999999999999999999999999999 4456666644
No 235
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=68.20 E-value=3.8 Score=55.16 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=51.6
Q ss_pred EEEEEecCC---eeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhh
Q psy15599 6 LKICIVDRN---VTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEY 72 (2347)
Q Consensus 6 L~v~~~~~~---~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~ 72 (2347)
|+|+.++.+ .+|.++|++.++|.++|..+.+++... ..+-|||.+.+...+...||.+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~---~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK---NVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS---CGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred eEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcc---eeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 455566553 599999999999999999999998764 3467999987664566899999888766
No 236
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=67.97 E-value=10 Score=38.12 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=47.1
Q ss_pred eEEEEEEecCC-eeEEEEecCCCcHHHHHHHH-HhhcCcccCCCccccccccccCCCccccccccCCchhhhhc-cCCcc
Q psy15599 4 LSLKICIVDRN-VTKTMQFDPSTSVYDACRII-RDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYIL-RNGDE 80 (2347)
Q Consensus 4 ~~L~v~~~~~~-~~kt~~f~~~~~v~~~~~~i-~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l-~~~~~ 80 (2347)
+.|.|.-..+. .+..+.|.|+.+|.++-..| .++... ++++--|++ +|+.|...++|..|++ .+|+.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gi----p~~~QrLi~------~Gk~L~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKAS----HISEIKLLL------KGKVLHDNLFLSDLKVTPANST 89 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCS----CGGGEEEEE------TTEEECTTCBGGGSCCBTTBCE
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCC----ChhhEEEEE------CCEECcCcCCHHHcCcCCCCCE
Confidence 33444433332 33445677999999999998 544221 345545554 4677889999999999 88888
Q ss_pred cccc
Q psy15599 81 LEYR 84 (2347)
Q Consensus 81 L~~~ 84 (2347)
|.+.
T Consensus 90 i~lm 93 (98)
T 4a20_A 90 ITVM 93 (98)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
No 237
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=67.93 E-value=18 Score=36.23 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..+ |....+.|+.+.||.++-..|+...|++ ++..-|++
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 69 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH-TDQLVLIF 69 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 356778877 7888999999999999999999999987 44555554
No 238
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=67.73 E-value=18 Score=35.77 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=37.8
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..++| ..++.|+++.|+.++-..|..+.|++ ++..-|++
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~ 59 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP-IKRMQLYY 59 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC-TTTEEEEE
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC-HHHEEEEE
Confidence 345688888888 78999999999999999999999985 44555654
No 239
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=67.71 E-value=8.2 Score=39.22 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=37.3
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..|.|..++|....+.|+.+.||.++-..|+.+.|+.. +..-|++
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~ 46 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEE-SQIKLIY 46 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCG-GGCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh-hhEEEEE
Confidence 35788999999999999999999999999999999853 3345554
No 240
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.47 E-value=13 Score=37.45 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=40.2
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
....|.|..+.|...++.|+++.||.+|-..|..+.|++ ++..-|++.
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip-~~qQrLi~~ 74 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR-WNKIVLKKW 74 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC-GGGCEEEET
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC-HHHEEEEEC
Confidence 346788999999999999999999999999999999986 455555543
No 241
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=66.86 E-value=3.3 Score=31.38 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1891 MNHLKESAKVMVTNVTSLLKTVK 1913 (2347)
Q Consensus 1891 ~~~L~~~a~~~~~~v~~ll~tv~ 1913 (2347)
..+|.+++|.+.++|++||.+++
T Consensus 3 q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 3 KKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999886
No 242
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.53 E-value=20 Score=37.60 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=37.3
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..+ |...++.|+.+.||.+|-..|+.+.||.. +..-|++
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~ 76 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQT-DQLVLIF 76 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCS-SSEEEEE
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCc-ceEEEEE
Confidence 456778888 88899999999999999999999999863 4555554
No 243
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=65.51 E-value=6.9 Score=38.49 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=50.1
Q ss_pred eEEEEEEecCCeeEEE-EecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTM-QFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~-~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
+.|+|.. .+-+.++ .+.++.+|.++-..|.++...+ ++.--|+.+ .-+|.-|.++.+|..|++.++..|+
T Consensus 8 m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip----~~~QkLi~~---k~~Gk~L~D~~~L~~~~i~~g~~l~ 78 (90)
T 1v5t_A 8 LPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL----PERQKLLGL---KVKGKPAENDVKLGALKLKPNTKIM 78 (90)
T ss_dssp CCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCC----TTTCEEESC---EETTEECCTTSBHHHHTCCTTEEEE
T ss_pred EEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC----HHHeEEEee---ccCCcCcCCCCCHHHcCCCCCCEEE
Confidence 4455554 4556678 8899999999999999987654 344344421 0134567778999999998888776
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
+.
T Consensus 79 l~ 80 (90)
T 1v5t_A 79 MM 80 (90)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 244
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=65.16 E-value=14 Score=41.56 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=38.3
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..|.|..++|...++.|+++.||.++-..|+.+.|++. +..-|++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~-~~QrLi~ 150 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 150 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCCEEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCH-HHEEEEE
Confidence 56889999999999999999999999999999999853 3445554
No 245
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=65.02 E-value=18 Score=37.25 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=38.7
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..++|...++.|+++.|+.++-..|+.+.|++. +..-|++
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~ 54 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIW 54 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcCh-HHEEEEE
Confidence 456889999999999999999999999999999999863 3444544
No 246
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=68.51 E-value=1.3 Score=41.75 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=47.2
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccccc
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRK 86 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~ 86 (2347)
+-+.++.|.++.+|.++...|.++...+ +++.-|++ .|..|.++++|..|++.+|+.+++..+
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~----~~~qrL~~------~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVP----ADQLRVIF------AGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 3456789999999999999988876433 34444554 245678889999999999998886543
No 247
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=64.52 E-value=22 Score=35.37 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=37.4
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~ 125 (2347)
.++...|.|..+.|+...+.|+++.||.++-..|..+.|++.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 456778889999999999999999999999999999999975
No 248
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=63.86 E-value=8.8 Score=39.77 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=45.9
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC-C----CcceeEEecCCccc
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN-H----DEYSLVRENPEDEV 140 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~-~----e~FsL~~~~~~~e~ 140 (2347)
...++||++|.++.++++....++.+|+..+.++++..+ + +++-|....-.+|+
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk 67 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEK 67 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCC
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcE
Confidence 457899999999999999999999999999999999854 2 47888887665553
No 249
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=63.78 E-value=12 Score=36.40 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=41.8
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
....++|||||++.-.|.|-+..|+.|.+...+++=||. ++....|..
T Consensus 6 ~~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~-pe~C~Vy~~ 53 (86)
T 1wxm_A 6 SGGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN-QDCCVVYRL 53 (86)
T ss_dssp CSSEEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC-SSSEEEEEE
T ss_pred ccceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC-HHHeEEEEc
Confidence 456899999999999999999999999999999998986 566666655
No 250
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.75 E-value=12 Score=37.04 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=37.1
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
....|.|..+ |...++.|+.+.||.++-..|+.+.|+.. +..-|++
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~ 61 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA-DRLVLIF 61 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT-TTBCCEE
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEE
Confidence 4567788888 88999999999999999999999999864 3344443
No 251
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=63.63 E-value=15 Score=36.24 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=35.1
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..|.|.. |....+.|+++.|+.++-..|+.+.|++ ++..-|++.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA-PEDQVVLLA 63 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC-GGGCEEEET
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhHEEEEEC
Confidence 4556665 8889999999999999999999999986 445556543
No 252
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=62.67 E-value=14 Score=37.82 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=39.9
Q ss_pred cccceeEEEEeC---CCcEEEEEEcC-CCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 84 RRKMRTLKVRML---DGTLKTLLVDD-SQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 84 ~~~~r~lkV~L~---DG~~~~v~Vd~-sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+....|.|.++ +|...++.|++ +.|+.++-..|....|++. +..-|++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~-~~QrL~~ 76 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPA-NKQKLSG 76 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCT-TTSEEEC
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCH-HHeEEEE
Confidence 445567889988 89999999998 9999999999999999863 3444544
No 253
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=62.01 E-value=20 Score=36.53 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=40.8
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.+..|+|.. +|..+.+.|..+++...|+...|++.||.. ..+.|++.
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~-~~~rF~Fd 76 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYD 76 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEET
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc-ccEEEEEC
Confidence 44567889998 999999999999999999999999999964 35555543
No 254
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=61.54 E-value=12 Score=42.04 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=53.4
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.|+|... +-+.++.+.|+.+|.++-..|.++...+ +++--|++ .++-|+.+++|..|++.+++.|++.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp----~~~QrLi~------~Gk~L~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGCCEEE------TTEECCTTCBGGGGTCCTTCEEEEC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC----HHHEEEEE------CCEECCCCCCHHHCCCCCCCEEEEE
Confidence 56677543 4677899999999999999999876543 34444554 3456888999999999999988865
Q ss_pred c
Q psy15599 85 R 85 (2347)
Q Consensus 85 ~ 85 (2347)
-
T Consensus 176 l 176 (189)
T 3q3f_A 176 L 176 (189)
T ss_dssp C
T ss_pred E
Confidence 4
No 255
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=61.41 E-value=17 Score=36.45 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=39.4
Q ss_pred cceeEEEEeCCCc--EEEEEEcCCCcHHHHHHHHHHHh-CCCCCCcceeEEe
Q psy15599 86 KMRTLKVRMLDGT--LKTLLVDDSQPVANLMVVICTKI-GITNHDEYSLVRE 134 (2347)
Q Consensus 86 ~~r~lkV~L~DG~--~~~v~Vd~sttv~evv~~Ic~~L-GL~~~e~FsL~~~ 134 (2347)
....|.|..++|. ..++.++++.||.++-..|..++ |+..++..-|++.
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 4467889999998 56888899999999999999976 6665567777664
No 256
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=60.50 E-value=65 Score=34.56 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=63.5
Q ss_pred HHHHHHHhcc---CCCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCccceeeeeeccccc-eeeeeC------c
Q psy15599 302 KVLYTKTCRS---LPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVR-RWGASS------N 371 (2347)
Q Consensus 302 k~~YL~~~rs---lp~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~-~w~~~~------~ 371 (2347)
...||+.+++ +|... + ..++++.|+..||.+.+.+...++...|+.+|. ...+.+ .
T Consensus 42 ll~~ID~aQq~gkLP~~~------------~--~Edvi~svSkyGvkl~~~d~~dvl~RipL~~I~~~v~YdDg~g~g~~ 107 (154)
T 4dx8_A 42 LINYIDVAQQDGKLPFVP------------P--EEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKS 107 (154)
T ss_dssp HHHHHHHHHHTTSSCSSC------------C--SCCEEEEEETTEEEEEETTSCCEEEEEEGGGEEEEEEEECCSSSCCE
T ss_pred HHHHHHHHHHhCcCCCCC------------C--cCeEEEEEeccCcEEEeccCcccccchhHHHhhhheeeccccccccE
Confidence 4567777764 45443 1 126899999999999999999999999999998 344543 2
Q ss_pred eEEEEeCCCcCc---EEEEe--ch-HHHHHHHHHHHHHHHHH
Q psy15599 372 VFTLDFGDYSDN---YYSVQ--TT-EAEQIQQLIAGYIDIIL 407 (2347)
Q Consensus 372 ~f~I~~~d~~~~---~f~~~--T~-q~k~I~~LI~gYi~l~l 407 (2347)
.|.++.++.... .+.|+ +. ++..|..++..-++.-+
T Consensus 108 vla~KT~~~~~~~~~~hv~Qc~s~~~A~~iC~~l~~~f~~~~ 149 (154)
T 4dx8_A 108 LLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVL 149 (154)
T ss_dssp EEEEEEECTTSCCEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCceEEEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 367777654332 33444 33 47888888887776654
No 257
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=60.29 E-value=27 Score=35.81 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred cccceeEEEEeCC----------CcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 84 RRKMRTLKVRMLD----------GTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 84 ~~~~r~lkV~L~D----------G~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+....+.|.+|+ |...++.|+.+.||.++-..|....|++. +..-|++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrL~~ 80 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPA-GKQKLQY 80 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCT-TTEEEEE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCCh-HHEEEEE
Confidence 3445678888875 67899999999999999999999999863 4555555
No 258
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=59.45 E-value=39 Score=35.47 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhccCcchHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHH
Q psy15599 2010 ELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQALPPISRRIAQSLTELVSIAEQLKGSNWMDPDDPTVIAET 2089 (2347)
Q Consensus 2010 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~s~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~e~ 2089 (2347)
+..+.++.+.-.+...+.+|+.+... ..++.+..++.+|..+|++|..+.. .+| ...
T Consensus 14 P~~e~Vvr~TE~ITk~IqeLl~AaQ~----------~~~~sfvpcserI~~AV~el~aLfp----------~~p---~~e 70 (135)
T 2jx0_A 14 PSTEDVILKTEQVTKNIQELLRAAQE----------FKHDSFVPCSEKIHLAVTEMASLFP----------KRP---ALE 70 (135)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHHHHHHHHTSC----------SSB---CCH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhc----------cccCccccHHHHHHHHHHHHHHhcC----------CCC---Cch
Confidence 34678888888888889999887731 2366788899999999999876641 222 234
Q ss_pred HHHHHHHHHHHHHHHHhccCCccCccc--CCccccc-cHHHHHHHHHHHHHHHHHHH
Q psy15599 2090 ELLGAAASIDAAAKKLSSLRPRRSLQE--TDETLNF-DEMILEAAKSIAAATSALVK 2143 (2347)
Q Consensus 2090 El~~aa~aIe~a~~~l~~~~~~~~~~~--~~~~l~v-~e~Il~~a~~i~~a~~~Lv~ 2143 (2347)
++..+-+.+-..+.+|+.-=.+..... .....++ -++|++.|-.|++|++.||-
T Consensus 71 tvr~sL~~L~~~a~~Lq~EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt 127 (135)
T 2jx0_A 71 PVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 127 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666654322222222 2334444 45999999999999999997
No 259
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=58.80 E-value=15 Score=38.61 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=47.5
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcc--c-C-CCccccccccccCCCccccccccCCchhhhhccCCc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEA--N-F-GEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~--~-~-~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
+.|+|....+ .+.++.|.|+.+|.++-..|.+..|.. + . .++++.-|.. .|+-|+.+++|..|++..++
T Consensus 18 m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy------~GK~LeD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 18 INLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY------QGRFLHGNVTLGALKLPFGK 90 (125)
T ss_dssp EEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES------SSSEEESSCBTGGGCCCTTS
T ss_pred EEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE------CCcCCCCCCcHHHcCCCCCC
Confidence 4555554444 788999999999999999999865432 0 0 0122222222 36788999999999987665
Q ss_pred c
Q psy15599 80 E 80 (2347)
Q Consensus 80 ~ 80 (2347)
.
T Consensus 91 ~ 91 (125)
T 2gow_A 91 T 91 (125)
T ss_dssp E
T ss_pred c
Confidence 3
No 260
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*
Probab=58.39 E-value=9.9 Score=43.45 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=50.2
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceee-ee---CceEEEEeCCCc--CcEEEEec-h-HHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWG-AS---SNVFTLDFGDYS--DNYYSVQT-T-EAEQIQQ 397 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~-~~---~~~f~I~~~d~~--~~~f~~~T-~-q~k~I~~ 397 (2347)
..++.|-|+..||.++|+++++++..+|+.+|.-+. .. .+.|.....+.. ..++.|.+ . .+..|..
T Consensus 119 ~~~V~L~IS~~gIkv~d~~t~~~i~~~~i~~ISf~a~~d~~~~~~FafIar~~~~~~~CHVF~cs~~~A~~I~~ 192 (207)
T 1n3h_A 119 GMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVIS 192 (207)
T ss_dssp SEEEEEEEETTEEEEEETTTTSCBCCCSCCCCSSSCSSSTTSSSCEEEEECCSSSCCEEEEEECSSSTHHHHHH
T ss_pred CceEEEEEECCeEEEEeCCCCceeeeeccceEEEEeccCCCcCCEEEEEecCCCCCEEEEEEEcCHHHHHHHHH
Confidence 468999999999999999999999999999997666 22 367887776653 24777764 3 2566543
No 261
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=58.04 E-value=18 Score=34.57 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=39.1
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.++|||||++.-.|.|-+..|+.|.+...+++=|| .++....|..
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L-~pe~C~V~~~ 47 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL-QPECCAVFRL 47 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC-CGGGEEEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC-CHHHeEEEEe
Confidence 68999999999999999999999999999998888 4456666644
No 262
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=62.59 E-value=2.1 Score=40.36 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.8
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~ 125 (2347)
.+.|..++|....+.|+++.|+.++-..|+...|++.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 38 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPA 38 (76)
Confidence 4668888999899999999999999999999998863
No 263
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=56.90 E-value=9.2 Score=47.48 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=49.3
Q ss_pred EEEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccc
Q psy15599 6 LKICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 6 L~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L 81 (2347)
++|+|... +.+.++.+.++.+|.++..+|.++.....+ .+++.-|++ +|+.|+.+++|..|++..++.|
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gi-p~~~QrLiy------~GK~L~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAF-PVAGQKLIY------AGKILSDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSC-CSTEEEEES------SSSEECSSSBTTTTCCCTTSCE
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCC-ChhheEEEE------CCeecCCcCCHHHcCCCCCCEE
Confidence 34555333 566789999999999999999985431111 244555554 3667888999999999988876
No 264
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=56.76 E-value=33 Score=35.43 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=41.3
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..+..|+|.-.||..+.++|..+++...|+...|++.|+. +..+.|++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~-~~~irFlFD 86 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP-MNSLRFLFE 86 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC-TTSEEEEET
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC-hhhEEEEEC
Confidence 4678899999999999999999999999999999999985 345555553
No 265
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=56.10 E-value=18 Score=37.15 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=41.9
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.+..|+|...+|..+.+.|..++++..|+...|++.||... .+.|++.
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~-~~rfiFd 72 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRN-SVRFLFD 72 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSS-SCEEESS
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc-cEEEEEC
Confidence 3456789999999999999999999999999999999999654 4555443
No 266
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=55.95 E-value=31 Score=35.25 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=36.1
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.-.|.|+||||+.+.-.+..+.|+.+|...|-.+ +. ....|.|+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~-~~~~f~L~t~ 68 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GY-HKSLYRLSTS 68 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TC-CTTTEEEECS
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CC-CCCCeEEEeC
Confidence 4568899999999999999999999999988754 32 2355776654
No 267
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=55.64 E-value=33 Score=37.81 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.3
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
.+.|..++|...++.|+++.||.++-..|+.+.|++.. ..-|++
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~ 45 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD-QQRLIF 45 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTT-TEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHH-HEEEEE
Confidence 57889999999999999999999999999999998643 344544
No 268
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=55.58 E-value=18 Score=36.50 Aligned_cols=38 Identities=8% Similarity=0.264 Sum_probs=32.6
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEA 41 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~ 41 (2347)
.+.+||+..|. ..|+|-+++.|++.+||..+.+|....
T Consensus 9 k~vvkvf~~Dg-ssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 9 PHVVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp CEEEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 46788888555 779999999999999999999998655
No 269
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=55.36 E-value=20 Score=40.05 Aligned_cols=107 Identities=10% Similarity=0.124 Sum_probs=62.8
Q ss_pred ceeEEEEecCCceEEEeCCc-cceeeeeeccccceeeee--CceEEEEeCCCcCc--EEEEech-HHHHHHHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERT-KEIMKTWPLTTVRRWGAS--SNVFTLDFGDYSDN--YYSVQTT-EAEQIQQLIAGYIDI 405 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~t-kevl~~~~~~~I~~w~~~--~~~f~I~~~d~~~~--~f~~~T~-q~k~I~~LI~gYi~l 405 (2347)
+.++.|-|++.||.+++.++ ++++..++...|.-.+++ ++.|.+...+..+. ++.|.+. .+..|..-|..=..+
T Consensus 53 ~~~V~L~VS~~gI~v~d~~t~~e~l~~~~I~~ISFc~vd~d~k~FaFI~~~~~~~f~CHVF~c~k~A~~vs~aV~~Af~l 132 (185)
T 2ysz_A 53 WPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACSG 132 (185)
T ss_dssp SCEEEEEEETTEEEEEESSCSSCEEEEECTTTCCEEECCSSTTEEEEEEESSSSCEEEEEEEESSCSTTHHHHHHHHHHS
T ss_pred CceEEEEEecCEEEEEecCCCcceeeeccEEEeeeeccCCCCcEEEEEecCCCccEEEEEEEccCchHHHHHHHHHHHHH
Confidence 56899999999999999987 588899998888766664 36788777655322 3444332 355677666644333
Q ss_pred HHhhhcccCCCCCCCCCCCccccccccccccchh
Q psy15599 406 ILKKKMSKDHFGIEGDEGSTMVEDSVSPLKATIF 439 (2347)
Q Consensus 406 ~lk~rr~kd~~~~~~ee~~~~~~~~v~~~~~~~~ 439 (2347)
..++.-....++..+ ++......+.+|....+.
T Consensus 133 ~yQk~l~~~~~~~~~-~~~~~~~~~~t~eer~~~ 165 (185)
T 2ysz_A 133 PSSGIEGRGSSGSSG-SSGSSGDAAVTPEERHLS 165 (185)
T ss_dssp CCCCCCCCCCCSCCS-SCSSSCSCCCCHHHHHHH
T ss_pred HHHHhhccCCCCCCC-cccCcCCcccCHHHHHHH
Confidence 222221222233222 333334445555544443
No 270
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.90 E-value=29 Score=34.85 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=36.0
Q ss_pred eeEEEEeCCC----cEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDG----TLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG----~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..|.|..+++ ...++.|+...||.++-..|..+.||.. +..-|++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~ 56 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA-EEAQIVY 56 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG-GGBCEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh-HHeEEEE
Confidence 5677888754 6888999999999999999999999863 4445554
No 271
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=54.83 E-value=34 Score=33.72 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=44.3
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCc
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPED 138 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~ 138 (2347)
...+|+++- |....+.++.+.+..++...|+..+++...+.|.|.+.++++
T Consensus 6 ~vkvK~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG 56 (89)
T 1vd2_A 6 QVRVKAYYR-GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG 56 (89)
T ss_dssp CEEEEEESS-SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS
T ss_pred eEEEEEEeC-CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC
Confidence 357888875 568899999999999999999999999888899999997754
No 272
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=54.70 E-value=21 Score=35.32 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=40.9
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
+...|+|||||++.-.|.|-+..|+.|.+...+++=|| .++....|..
T Consensus 12 ~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L-~pe~C~Vy~~ 59 (96)
T 3ny5_A 12 QKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL-IPECCAVYRI 59 (96)
T ss_dssp SSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC-CGGGEEEEEC
T ss_pred hhCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC-ChHHeEEEEc
Confidence 45689999999999999999999999999999998888 4455666554
No 273
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=54.19 E-value=38 Score=32.74 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=33.9
Q ss_pred EEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 92 VRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 92 V~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+..++|....+.|+++.|+.++-..|....|++ ++..-|++
T Consensus 16 ~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL~~ 56 (85)
T 2kd0_A 16 TVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL-PRGQKLIF 56 (85)
T ss_dssp EEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC-TTTCEEEE
T ss_pred EEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC-hHHEEEEE
Confidence 444689999999999999999999999999996 34555654
No 274
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=53.45 E-value=54 Score=35.19 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=51.1
Q ss_pred cceeEEEEecCCceEEEeC-----CccceeeeeeccccceeeeeC--ceEEEEeCCCcC--cEEEEech-HHHHHHHHHH
Q psy15599 331 KLVPRLLGVTKDSVLRLDE-----RTKEIMKTWPLTTVRRWGASS--NVFTLDFGDYSD--NYYSVQTT-EAEQIQQLIA 400 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~-----~tkevl~~~~~~~I~~w~~~~--~~f~I~~~d~~~--~~f~~~T~-q~k~I~~LI~ 400 (2347)
.+.++.|-|++.||.++++ .+++++..++...|.-+++.+ +.|-+......+ ..+.|.+. .+..|.+-|.
T Consensus 52 ~w~~v~l~Vs~~~i~v~~~~~~~~~~~~~l~~c~vr~ISFcgvgkd~r~FaFI~~~~~~~f~CHVF~ce~~A~~ls~aV~ 131 (144)
T 2dyq_A 52 AWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQ 131 (144)
T ss_dssp CCEEEEEEECSSEEEEEECC------CCCSSEEEGGGEEEEEECSSTTEEEEEEECSSSCEEEEEEECSSCTHHHHHHHH
T ss_pred cCcceEEEEeccceEEeccccccccccceeeeceEEEEeeeecCCCCcEEEEEEeCCCCcEEEEEEecCCchHHHHHHHH
Confidence 3568999999999999997 488999999999998888844 566666633322 24555543 3455666665
Q ss_pred HHHHHH
Q psy15599 401 GYIDII 406 (2347)
Q Consensus 401 gYi~l~ 406 (2347)
.=..+.
T Consensus 132 ~Ac~l~ 137 (144)
T 2dyq_A 132 AACMVQ 137 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 275
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=53.16 E-value=2.8 Score=44.15 Aligned_cols=68 Identities=25% Similarity=0.356 Sum_probs=0.4
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccccceeEEEE
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRKMRTLKVR 93 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~~r~lkV~ 93 (2347)
+-+.++.++|+.+|.++-..|.++...+ +++.-|++ .|.-|+.+++|..|++.+|+.+++. +.
T Consensus 10 G~~~~l~v~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~~~~I~~gsti~l~-------~r 72 (128)
T 3u5e_m 10 GKTITLEVESSDTIDNVKSKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV-------LR 72 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCcC----hHHEEEEE------CCEECCCCCchhhhccCCCCEEEEE-------EE
Confidence 4566899999999999999998876543 34444554 2456788999999999999887744 45
Q ss_pred eCCCc
Q psy15599 94 MLDGT 98 (2347)
Q Consensus 94 L~DG~ 98 (2347)
+++|.
T Consensus 73 l~GG~ 77 (128)
T 3u5e_m 73 LRGGI 77 (128)
T ss_dssp ----C
T ss_pred cCCCC
Confidence 56663
No 276
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=52.68 E-value=46 Score=41.65 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=52.9
Q ss_pred ceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeCceEEEEeCCCcC-----------------------cEEEEe
Q psy15599 332 LVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSD-----------------------NYYSVQ 388 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~~~f~I~~~d~~~-----------------------~~f~~~ 388 (2347)
+.++.|-|+.+||.+++.++++++..+++..|.-..-..+.|.+.-.+... .++.|+
T Consensus 65 ~~~v~l~IS~~gi~v~~~~t~~~~~~~~l~~IS~~~d~~~~~~~iak~~~~~~~~~~~~~~~~~~~~~~~~~~~~ChvF~ 144 (388)
T 3suz_A 65 LTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFE 144 (388)
T ss_dssp SEEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEECSSEEEEEEEECCCCCC-------------CCCCEEEEEEEEE
T ss_pred cceEEEEEEeceEEEEecCCcChhhhccccceeEEeecCceEEEEEecCCCccccccccccCccccccccccceEEEEec
Confidence 467999999999999999999999999988885332223555544432211 188999
Q ss_pred chHHHHHHHHHHHHHHH
Q psy15599 389 TTEAEQIQQLIAGYIDI 405 (2347)
Q Consensus 389 T~q~k~I~~LI~gYi~l 405 (2347)
+.++..|..-|..=+.+
T Consensus 145 s~~a~~i~~ti~qaf~~ 161 (388)
T 3suz_A 145 SEDAQLIAQSIGQAFSV 161 (388)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 98888887766654443
No 277
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=52.54 E-value=52 Score=35.18 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=40.3
Q ss_pred cceeEEEEecCCceEEEeCCccceeeeeeccccceeeeeC--ceEEEEeCCC
Q psy15599 331 KLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS--NVFTLDFGDY 380 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~~tkevl~~~~~~~I~~w~~~~--~~f~I~~~d~ 380 (2347)
++.++.|-|++.||.+++.++++++..++...|.-.++++ +.|.+...+.
T Consensus 44 ~~~~v~l~Vs~~gi~v~~~~t~e~l~~~~i~~ISFcg~~kd~k~FafI~~~~ 95 (140)
T 3dxe_A 44 QWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAG 95 (140)
T ss_dssp GCEEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEECSSTTEEEEEEEEE
T ss_pred CCceEEEEEcCCEEEEEecCCcceeeeccEEEEeeeccCCCCcEEEEEecCC
Confidence 3567999999999999999999999999888886666643 6777766544
No 278
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=52.34 E-value=12 Score=40.76 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=41.3
Q ss_pred EEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCcccccccc-ccCCCc
Q psy15599 8 ICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFL-SDGDVK 59 (2347)
Q Consensus 8 v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~-~~~~~~ 59 (2347)
++++ .+..|.+++...|+..+|+..+.+||... .++.+|+||. .+++..
T Consensus 81 fflP-~gs~k~v~VsS~tTt~eVI~~LL~KFkV~--dnP~kFALye~vh~~ge 130 (163)
T 3ddc_B 81 FYLP-LDAIKQMHISSTTTVSEVIQGLLDKFMVV--DNPQKFALFKRIHKDGQ 130 (163)
T ss_dssp EEEE-EEEEEEEEEETTCCHHHHHHHHHHHTTCC--SCGGGEEEEEEEEETTE
T ss_pred EECC-CCceEEEEEccCCcHHHHHHHHHHHhccc--CChhheEEEEEEccCCc
Confidence 5566 57999999999999999999999999887 5789999999 455433
No 279
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.04 E-value=22 Score=35.06 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=35.6
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|..++|....+.|+.+.||.++-..|+.+. ++..-|++
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~ 49 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIY 49 (95)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEE
Confidence 46688888999999999999999999999998765 55555654
No 280
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=51.95 E-value=17 Score=35.66 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=40.1
Q ss_pred eEEEE--ecCCCcHHHHHHHH-HhhcCcccCCCccccccccccCCCccccccccCCchhhhhc-cCCcccc
Q psy15599 16 TKTMQ--FDPSTSVYDACRII-RDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYIL-RNGDELE 82 (2347)
Q Consensus 16 ~kt~~--f~~~~~v~~~~~~i-~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l-~~~~~L~ 82 (2347)
+.++. |.|+.+|.++-..| .++... ++++--|++ +|+.|+.+++|..|++ .+|..|.
T Consensus 13 ~~~i~v~v~~~~TV~~lK~~I~~~~~gi----p~~~QrLi~------~Gk~L~D~~tL~~y~I~~~~stl~ 73 (87)
T 2lxa_A 13 KFSIEHDFSPSDTILQIKQHLISEEKAS----HISEIKLLL------KGKVLHDNLFLSDLKVTPANSTIT 73 (87)
T ss_dssp CEECCEECCTTCBHHHHHHHHHHTTSCS----SSTTEEEEE------TTEECCTTCBHHHHCCCGGGCEEE
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHhcCC----ChHHEEEEE------CCEECcCcCCHHHcCCCCCCCEEE
Confidence 34454 55999999999999 554332 234444544 4678999999999998 5666655
No 281
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=51.89 E-value=18 Score=35.75 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=54.7
Q ss_pred EEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
.|.|-. .+-.+++++.|++++.+|+..-.+|+.. ++++|.|.. .. .-++-.-++-+.++-++..|++.+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl----~~~~~~Lkh----~~--k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF----NPSEYDLKF----QR--TVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC----CGGGCEEEE----TT--EEESSSCBHHHHCCCSSCEEEEEC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCC----ChhhCeEEe----CC--EeccccceeEecCCCCCCEEEEEE
Confidence 445533 3357899999999999999999999987 478999887 22 345667788888998888888765
Q ss_pred cc
Q psy15599 86 KM 87 (2347)
Q Consensus 86 ~~ 87 (2347)
..
T Consensus 81 ~s 82 (90)
T 2al3_A 81 VS 82 (90)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 282
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.30 E-value=53 Score=33.97 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=41.2
Q ss_pred ccccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHh------CCC-CCCcceeEEe
Q psy15599 83 YRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKI------GIT-NHDEYSLVRE 134 (2347)
Q Consensus 83 ~~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~L------GL~-~~e~FsL~~~ 134 (2347)
+......|+|.+++|...++.|+++.||.+|-..|.... |+. .++..-|.+.
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~ 70 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 70 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC
Confidence 344557788999999999999999999999999999843 553 4566666654
No 283
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=51.19 E-value=1.9e+02 Score=33.05 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHH
Q psy15599 966 QELSSAATGLSETTNEVISSVK---NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLS 1042 (2347)
Q Consensus 966 ~~L~~aA~~L~~a~~~lv~~~~---~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~ 1042 (2347)
.+...--..|..++..++.+.. -|.-.+..+|-+.-.-.+||-.|-.+.....+++.+.+|+..+-.+...--.++.
T Consensus 106 ~Qc~s~~~~L~~AIdaF~~sv~~nQPP~iFVahsK~VIlsAHKLVfIGDTL~r~~~~~dvr~~Vl~~sn~Lc~~LK~~Vl 185 (229)
T 3t6g_B 106 EQCEANLTTLTNAVDAFFTAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVA 185 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhHhcCCEEEEEeeeeeeecchHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666542 3456788888889999999999999999999999999999999999888888888
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1043 TARSAALDPSASNSKSQLSAAARNVADSINNLLN 1076 (2347)
Q Consensus 1043 ~aKa~~~~p~d~~a~~qL~~aAr~l~~sin~Lv~ 1076 (2347)
+.|.++-.=-++.+-+-+..++..|+..-.++++
T Consensus 186 ATK~AAl~YPS~~AlQeMvd~v~eLs~~Aqqfr~ 219 (229)
T 3t6g_B 186 TTKAAALQYPSPSAAQDMVERVKELGHSTQQFRR 219 (229)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888764444444444444444444444444443
No 284
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.70 E-value=52 Score=34.05 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=54.8
Q ss_pred ceeEEEE-eCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcccccCCCCcccchhchhhhhhhhHHHH
Q psy15599 87 MRTLKVR-MLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKME 165 (2347)
Q Consensus 87 ~r~lkV~-L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e~~~~~~~g~L~L~~~~~~~~~~~k~~ 165 (2347)
...++|. .++|...++.++.+.|+.++-..+...++++.. -.-|.|. |
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e-~qrLIy~------------G------------------ 63 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHS-VLQIRYS------------G------------------ 63 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTT-TEEEEET------------T------------------
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChH-HEEEEEC------------C------------------
Confidence 3567776 778999999999999999999999999998753 2223322 2
Q ss_pred HHHhhhccCccccccccchhhhhcCCCCCceEEEEEEe
Q psy15599 166 QLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKF 203 (2347)
Q Consensus 166 ~Lk~~l~~~~~~~WLd~~ktL~eQgv~e~~~L~LRrKf 203 (2347)
+-|.-+.+|.+.|+.+..+++|-++=
T Consensus 64 ------------KiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 64 ------------KILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp ------------EEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred ------------eEcCCcchHHHcCCCCCCEEEEEEec
Confidence 12233567788888889999987664
No 285
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.22 E-value=16 Score=36.73 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=35.8
Q ss_pred hhhhhccCCcccccccc-ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 70 LEYYILRNGDELEYRRK-MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 70 L~~y~l~~~~~L~~~~~-~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+..|.+..-..|.+... ...|+|.. +|....+.|+.+.||.++-..|+.+.|++. +..-|++
T Consensus 10 ~~~~~~~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~ 72 (101)
T 3m63_B 10 MSDYDIPTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV-ANQRLIY 72 (101)
T ss_dssp -------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCS-TTCCEEE
T ss_pred ccccCCCcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcCh-HHEEEEE
Confidence 34444433334444332 34577776 888899999999999999999999999864 3345554
No 286
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=49.00 E-value=4.4e+02 Score=32.03 Aligned_cols=25 Identities=28% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 2126 MILEAAKSIAAATSALVKAASASQR 2150 (2347)
Q Consensus 2126 ~Il~~a~~i~~a~~~Lv~aa~~~q~ 2150 (2347)
.+......+..+...|-..+..++.
T Consensus 273 ~~~~~~~~~~~~~~~l~~~a~~L~~ 297 (341)
T 3zx6_A 273 QNAALVEESAAAAAALEEQASRLTE 297 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666644
No 287
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=47.22 E-value=32 Score=32.97 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=50.3
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|.-.+.+....+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|++.+|+.++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~----~~~~rf~f-d-----G~~l~~~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS----GHKLSFFF-D-----GTKLSGKELPADLGLESGDLIEV 77 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT----TCCCEEEE-T-----TEECCSCCCHHHHTCCTTCEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC----cccEEEEE-C-----CEEcCCCCCHHHcCCCCCCEEEE
Confidence 34444433333367899999999999999999987644 34444444 2 34578889999999999998874
No 288
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.88 E-value=37 Score=34.45 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=52.3
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|.-.+ +....+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|++..++.|++
T Consensus 25 I~IkVk~~~-g~~i~~kVk~~t~l~kL~~~y~ek~gi~----~~~~rf~F-d-----G~~l~~~~Tp~dl~medgD~Idv 93 (104)
T 1wz0_A 25 INLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLS----MRQIRFRF-D-----GQPINETDTPAQLEMEDEDTIDV 93 (104)
T ss_dssp EEEEEECSS-SCEEEEEECTTSCHHHHHHHHHHHHTCC----TTTSCEES-S-----SSBCCTTSCTTTTTCCTTEEEEE
T ss_pred EEEEEECCC-CCEEEEEEcCCChHHHHHHHHHHHhCCC----cceEEEEE-C-----CEEcCCCCCHHHcCCCCCCEEEE
Confidence 344444333 3567899999999999999999987654 34444444 2 34577889999999999999886
Q ss_pred ccc
Q psy15599 84 RRK 86 (2347)
Q Consensus 84 ~~~ 86 (2347)
...
T Consensus 94 ~~~ 96 (104)
T 1wz0_A 94 FQQ 96 (104)
T ss_dssp CCC
T ss_pred EEe
Confidence 543
No 289
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=46.54 E-value=11 Score=36.32 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=38.2
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
..+||+-++|+ ..|.++++.|+.++...|.+.+++.. +.|+|++..+
T Consensus 5 m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~-~~~~l~~~~~ 51 (80)
T 2pjh_A 5 IIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQN-NGFSVYINRN 51 (80)
T ss_dssp CCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCT-TTCCCCCSCC
T ss_pred EEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCC-CcceEEecCC
Confidence 56889999995 55779999999999999999999864 5677766543
No 290
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.25 E-value=36 Score=35.26 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=45.3
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcc---cC-CCccccccccccCCCccccccccCCchhhhhccCCc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEA---NF-GEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~---~~-~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
+.|+|.... +-+.++.|.|+.+|.++-..|.+..+.. .. .++++--|.+ .|+-|+.+++|..|++..++
T Consensus 17 m~I~vKtl~-G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy------~GK~LeD~~TL~~y~I~~~~ 89 (116)
T 1wgh_A 17 INLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY------QGRFLHGNVTLGALKLPFGK 89 (116)
T ss_dssp EEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE------TTEEECSSCBTTTTTCCSSC
T ss_pred EEEEEEeCC-CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE------CCcCCCCCCcHHHcCCCCCC
Confidence 344444333 4778999999999999999999965432 00 0112222222 36788999999999987554
No 291
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=46.14 E-value=15 Score=36.49 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=37.8
Q ss_pred cceeEEEEeCCCcEEEE-EEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 86 KMRTLKVRMLDGTLKTL-LVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v-~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
..+.++|++ ||..+.| .|+..||+.||+..+|+..|. +..|-|....-+.|
T Consensus 6 ~~mel~Vwv-~g~er~VsGvT~~TTC~DVV~aL~~~~G~--~~~y~LvE~wRg~E 57 (95)
T 2cs4_A 6 SGMELKVWV-DGVQRIVCGVTEVTTCQEVVIALAQAIGR--TGRYTLIEKWRDTE 57 (95)
T ss_dssp CCBCCCEEE-TTEEECCSSBCSSSCHHHHHHHHHHHHSC--CSEEEEEEEETTEE
T ss_pred CCCEEEEEE-CCceeEEECCCCCCcHHHHHHHHHhccCC--CccEEEEEecCCCe
Confidence 345677887 6665544 789999999999999999885 45688877654333
No 292
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=44.93 E-value=20 Score=35.02 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=36.5
Q ss_pred ceeEEEEeCCCc--EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 87 MRTLKVRMLDGT--LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 87 ~r~lkV~L~DG~--~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
...++|++-+.. ...+.|.+.||+.||+ .+|+..|- ..|-|....-+.|
T Consensus 6 ~mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~---~~~~LvE~WR~~E 56 (86)
T 2uwq_A 6 PMFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE---SDCHLAEVWCGSE 56 (86)
T ss_dssp SEEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS---SSCEEEEEETTEE
T ss_pred ceEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC---CcEEEEeeeCCCc
Confidence 456888876554 4456899999999999 99988775 5677776654433
No 293
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=43.88 E-value=79 Score=33.51 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=50.3
Q ss_pred cceeEEEEecCCceEEEeCCccc-eeeeeeccccceeeeeC--------------ceEEEEeCCC----cCcEEEE---e
Q psy15599 331 KLVPRLLGVTKDSVLRLDERTKE-IMKTWPLTTVRRWGASS--------------NVFTLDFGDY----SDNYYSV---Q 388 (2347)
Q Consensus 331 ~~~~vlLGI~~~GI~ild~~tke-vl~~~~~~~I~~w~~~~--------------~~f~I~~~d~----~~~~f~~---~ 388 (2347)
.+.++.|=|+.+||.+.|+.+|. ....||+..|...++++ +.|-+..... .+..|.| +
T Consensus 38 ~~t~vh~kVS~qGItLtD~~rk~ffRrhypl~~VsfCa~dP~~r~w~~~~~~~~~riFGFVar~~~~~~~n~CHvF~e~d 117 (134)
T 1wvh_A 38 TATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAELD 117 (134)
T ss_dssp CCEEEEEEEETTEEEEEESSSCSSCEEEEEGGGEEEEEECTTCCEEECSSSSCEEEEEEEEECC-CCTTCEEEEEEEECC
T ss_pred CCeEEEEEEEcCCCeEEccCcceEEEEecccCcEEEecCCcccccccccccCCCceEEEEEEccCCCCCCeeEEEecccC
Confidence 35678999999999999998886 45789999998777765 2444444322 1347777 3
Q ss_pred chH-HHHHHHHHHHH
Q psy15599 389 TTE-AEQIQQLIAGY 402 (2347)
Q Consensus 389 T~q-~k~I~~LI~gY 402 (2347)
+.+ +..|..+|..+
T Consensus 118 ~~qpa~~Iv~~v~~~ 132 (134)
T 1wvh_A 118 PDQPAAAIVNFVSRV 132 (134)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh
Confidence 444 67777777654
No 294
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=43.64 E-value=29 Score=35.88 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC--CCcceeEEec
Q psy15599 95 LDGTLKTLLVDDSQPVANLMVVICTKIGITN--HDEYSLVREN 135 (2347)
Q Consensus 95 ~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~--~e~FsL~~~~ 135 (2347)
++-.+++|.+...+|+.+|+..+.+++||.. ++.|.|+...
T Consensus 21 ~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 21 PNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp SSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 5566999999999999999999999999964 6889999875
No 295
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.97 E-value=52 Score=32.18 Aligned_cols=47 Identities=17% Similarity=0.055 Sum_probs=36.7
Q ss_pred ceeEEEEeCCCc--EEEEEEcCCCcHHHHHHHHHHHh--CCCCCCcceeEEe
Q psy15599 87 MRTLKVRMLDGT--LKTLLVDDSQPVANLMVVICTKI--GITNHDEYSLVRE 134 (2347)
Q Consensus 87 ~r~lkV~L~DG~--~~~v~Vd~sttv~evv~~Ic~~L--GL~~~e~FsL~~~ 134 (2347)
...|.|..++|. ..++.++.+.||.++-..|.... |++ ++..-|++.
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~-~~~QrLi~~ 57 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR-PEDQRLIYS 57 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC-TTTCEEEET
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC-hHHeEEEEC
Confidence 357889999998 56666779999999999999998 875 345556553
No 296
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=42.57 E-value=30 Score=34.39 Aligned_cols=72 Identities=6% Similarity=0.118 Sum_probs=52.1
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.|.|.+ .+.+.++++.+++.+..++..+.++...+ ++..-|++ + |.-|.+..|++.|++.+++.++..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~----~~~~rf~F-d-----G~~l~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS----MRQIRFRF-D-----GQPINETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC----GGGEEEEE-T-----TEECCTTCCTTTTTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC----cccEEEEE-C-----CEEcCCCCCHHHcCCCCCCEEEEE
Confidence 3444432 34567899999999999999999987654 34443333 2 345788899999999999998876
Q ss_pred ccc
Q psy15599 85 RKM 87 (2347)
Q Consensus 85 ~~~ 87 (2347)
...
T Consensus 78 ~~~ 80 (94)
T 2io1_B 78 QQQ 80 (94)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
No 297
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=42.09 E-value=41 Score=33.93 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=40.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..|+|||||++.-.|.|-+..|+.|.+....++=||. ++....|..
T Consensus 19 ~~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~-pe~C~Vy~~ 64 (107)
T 1rrb_A 19 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ-PECCAVFRL 64 (107)
T ss_dssp CEEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCC-TTTEEEEEC
T ss_pred ceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC-HHHceeEEc
Confidence 3699999999999999999999999999999999996 567777755
No 298
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=41.90 E-value=37 Score=41.04 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=50.3
Q ss_pred EEEEecC-CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccc
Q psy15599 7 KICIVDR-NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRR 85 (2347)
Q Consensus 7 ~v~~~~~-~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~ 85 (2347)
+|+|... +-+.++.+.++.+|.++..+|.++...+ +++--|+. .++-|+..++|..|++.+++.|++..
T Consensus 235 qI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp----~~~QRLi~------~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 235 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC----GGGCEEEE------TTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC----hHHEEEEe------CCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4444332 3566899999999999999999876543 34444444 24568889999999999999887654
Q ss_pred c
Q psy15599 86 K 86 (2347)
Q Consensus 86 ~ 86 (2347)
+
T Consensus 305 R 305 (307)
T 3ai5_A 305 R 305 (307)
T ss_dssp -
T ss_pred e
Confidence 3
No 299
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=41.77 E-value=40 Score=33.29 Aligned_cols=76 Identities=8% Similarity=0.129 Sum_probs=53.3
Q ss_pred CcceEEEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCc
Q psy15599 1 MATLSLKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGD 79 (2347)
Q Consensus 1 ~~~~~L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~ 79 (2347)
|..=.++|.|.+ .+....+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|++.+|+
T Consensus 1 ~~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~----~~~~rf~F-d-----G~~l~~~~Tp~dl~medgD 70 (91)
T 2io0_B 1 MANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS----MRQIRFRF-D-----GQPINETDTPAQLEMEDED 70 (91)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC----STTEEEEE-T-----TEECCTTCCTTTTTCCTTE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC----cccEEEEE-C-----CEEcCCCCCHHHcCCCCCC
Confidence 444455666643 34577899999999999999999986654 34444444 2 3457888999999999999
Q ss_pred ccccccc
Q psy15599 80 ELEYRRK 86 (2347)
Q Consensus 80 ~L~~~~~ 86 (2347)
.++....
T Consensus 71 ~Idv~~~ 77 (91)
T 2io0_B 71 TIDVFQQ 77 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 8886543
No 300
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=41.13 E-value=2.7e+02 Score=29.93 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC--CCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHH
Q psy15599 963 RLQQELSSAATGLSETTNEVISSVK--NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKF 1040 (2347)
Q Consensus 963 ~~q~~L~~aA~~L~~a~~~lv~~~~--~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kL 1040 (2347)
+-......+...+..+.-++.+... -|++.+...|.+...+..|++.+-+....-+ ++.+.++-.+=+-+...+..|
T Consensus 19 Rt~D~VY~at~~VVkaV~~Ls~~v~~a~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp-~s~~~EIema~k~L~kDM~eL 97 (153)
T 3gm3_A 19 RTDDLVYLNVMELVRAVLELKNELAQLPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLP-SSSRTEIEGTQKLLNKDLAEL 97 (153)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666555544444331 3678889999999999999999999888775 467778877777778888888
Q ss_pred HHHHHhh---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 1041 LSTARSA---ALDPSASNSKSQLSAAARNVADSINNLLNIC 1078 (2347)
Q Consensus 1041 l~~aKa~---~~~p~d~~a~~qL~~aAr~l~~sin~Lv~a~ 1078 (2347)
+++-|-+ ..++-|.+++.++-++|-.++---++|.++.
T Consensus 98 Is~MkLAqq~~~TtL~eEyrr~MLsaaH~LA~DaKNLlD~V 138 (153)
T 3gm3_A 98 INKMRLAQQNAVTSLSEECKRQMLTASHTLAVDAKNLLDAV 138 (153)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776664 5677889988887777777777777777755
No 301
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=41.03 E-value=49 Score=33.74 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccccc-ccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWL-EPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL-~~~~tL~~y~l~~~~~L~ 82 (2347)
-.|.|+++++ ....-+|..+.+|.++..+|.+.... ++..|-|.- .-|+|-... +..++|+..++.+...|.
T Consensus 14 t~IqIRlpdG-~rl~~rF~~~~tl~~v~~fV~~~~~~----~~~~f~L~t--~fPrk~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 14 ARIQFRLPDG-SSFTNQFPSDAPLEEARQFAAQTVGN----TYGNFSLAT--MFPRREFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp EEEEEECSSS-CEEEEEECTTSBHHHHHHHHHHHHTT----SSCSCEEEC--SSSCCBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred EEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHhccCC----CCCceEEEc--CCCCcCCcccccCCCHHHCCCCCceEEE
Confidence 4677888876 46688999999999999999987432 356676664 225554444 358899999998888888
Q ss_pred cccccee
Q psy15599 83 YRRKMRT 89 (2347)
Q Consensus 83 ~~~~~r~ 89 (2347)
+.+..+.
T Consensus 87 v~~~~~~ 93 (109)
T 2dzk_A 87 LLPAGRP 93 (109)
T ss_dssp EECCSSC
T ss_pred EEECcCC
Confidence 7765444
No 302
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=40.37 E-value=45 Score=32.90 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=45.8
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhh
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYY 73 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y 73 (2347)
+.+|++. .+-.+-++|.++.+..++|..+++.++.. ....|-+.|-|++ ...+-+.....|+..
T Consensus 7 vkvK~~~--~gdi~~~~v~~~i~~~~L~~kv~~~~~~~---~~~~f~lky~DEe-GD~itisSd~EL~eA 70 (89)
T 1vd2_A 7 VRVKAYY--RGDIMITHFEPSISFEGLCNEVRDMCSFD---NEQLFTMKWIDEE-GDPCTVSSQLELEEA 70 (89)
T ss_dssp EEEEEES--SSCEEEEEECTTCCHHHHHHHHHHHTTCC---SSCCEEEEECCSS-SCCEECCSHHHHHHH
T ss_pred EEEEEEe--CCeEEEEECCCCCCHHHHHHHHHHHhCCC---CCCeEEEEEECCC-CCcccccCHHHHHHH
Confidence 4555555 34467899999999999999999999865 3467999998885 333344444445443
No 303
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=40.05 E-value=6 Score=43.01 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=0.0
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccccccceeEEEE
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYRRKMRTLKVR 93 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~~~~r~lkV~ 93 (2347)
+-+.++.+.|+.+|.++-..|.++...+ +++--|++ .|..|+.+++|..|++.+|+.|++. +.
T Consensus 10 G~~~~l~V~~~~TV~~LK~~I~~~~gip----~~~QrLi~------~Gk~L~D~~tL~dygI~~gstL~Lv-------lr 72 (152)
T 3u5c_f 10 GKTITLEVESSDTIDNVKSKIQDKEGIP----PDQQRLIF------AGKQLEDGRTLSDYNIQKESTLHLV-------LR 72 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCC----HHHEEEEE------CCEEccccCcHHHcCCCCCCEEEEE-------ee
Confidence 3456899999999999999998876543 34444444 2456888999999999998887754 45
Q ss_pred eCCCc
Q psy15599 94 MLDGT 98 (2347)
Q Consensus 94 L~DG~ 98 (2347)
+++|.
T Consensus 73 l~GGg 77 (152)
T 3u5c_f 73 LRGGG 77 (152)
T ss_dssp -----
T ss_pred ccCCC
Confidence 56664
No 304
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=39.84 E-value=51 Score=34.56 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=39.3
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHH------hCCC-CCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTK------IGIT-NHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~------LGL~-~~e~FsL~~~ 134 (2347)
.....|+|.+++|...++.|+++.||.+|-..|... -|++ .++..-|.+.
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 445789999999999999999999999999999983 3553 3455555543
No 305
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=39.68 E-value=78 Score=32.16 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=34.8
Q ss_pred ccccceeEEEEeCCC----cEEEEEEcCCCcHHHHHHHHHHHhCCCCC
Q psy15599 83 YRRKMRTLKVRMLDG----TLKTLLVDDSQPVANLMVVICTKIGITNH 126 (2347)
Q Consensus 83 ~~~~~r~lkV~L~DG----~~~~v~Vd~sttv~evv~~Ic~~LGL~~~ 126 (2347)
|.+....++|++-|- ...++.|+++.|+.++-..|..+.||+..
T Consensus 18 ~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~ 65 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPV 65 (105)
T ss_dssp --CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHH
Confidence 455566777777763 47788999999999999999999999764
No 306
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=39.57 E-value=4.1e+02 Score=29.00 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhcCCC-C-------chhHhhHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHH
Q psy15599 964 LQQELSSAATGLSETTNEV--ISSVKNP-A-------NLPASSKQYSHSLQNLVDIGMEIIS---TTESRETQTKMLSSL 1030 (2347)
Q Consensus 964 ~q~~L~~aA~~L~~a~~~l--v~~~~~~-~-------~L~~~sk~~a~~~~~L~~~~~~~a~---~~~d~~~q~~li~~~ 1030 (2347)
+|+++..+...|-.-+... ...+|.+ + ++-.++..+-.++..|+.-+++..+ +.+|+..+..|-.-+
T Consensus 19 LQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~~L~~kl~r~L 98 (163)
T 1z23_A 19 LQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSDRTLHAKLSRQL 98 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 3566666666555543333 2234555 3 3445555666666677766666655 566777777776666
Q ss_pred HHHhhhHHHHHHHHHhhcCC-----CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1031 KSVSTSSSKFLSTARSAALD-----PSASNSKSQLSAAARNVADSINNLLNICT 1079 (2347)
Q Consensus 1031 ~~i~~~s~kLl~~aKa~~~~-----p~d~~a~~qL~~aAr~l~~sin~Lv~a~~ 1079 (2347)
+.+.+ +.++|...+...-+ ...|-.-.+|..++|.|.+-+.+|..-..
T Consensus 99 q~l~d-s~qiL~~~~~~Ld~~~~~~~~~~DdLDrfVmvaR~vpdD~kqlas~I~ 151 (163)
T 1z23_A 99 QKMED-VYQTLVVHGQVLDSGRGGPGFTLDDLDRLVACSRAVPEDAKQLASFLH 151 (163)
T ss_dssp HHHHH-HHHHHHHHHHHHHCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-HHHHHHHHHHHHHccCCCCCCCcchHHHHHHhhccCCHHHHHHHHHHH
Confidence 66443 44444333332211 23467889999999999999999987653
No 307
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=39.21 E-value=1.2e+02 Score=29.09 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 95 LDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 95 ~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
....-..+.|...+++.+++..-|.+-||+...-+.|.+.
T Consensus 17 ~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 17 SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc
Confidence 3344678899999999999999999999987655555443
No 308
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=38.67 E-value=40 Score=33.36 Aligned_cols=71 Identities=6% Similarity=0.124 Sum_probs=51.0
Q ss_pred EEEEEec-CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccccc
Q psy15599 6 LKICIVD-RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEYR 84 (2347)
Q Consensus 6 L~v~~~~-~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~~ 84 (2347)
+.|.|.+ .+....+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|++..|+.++..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~----~~~~rf~f-d-----G~~l~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS----MRQIRFRF-D-----GQPINETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC----GGGEEEEE-T-----TEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC----ccceEEEE-C-----CEEcCCCCCHHHcCCCCCCEEEEE
Confidence 4444433 33567899999999999999999987654 34444444 2 345778899999999999988765
Q ss_pred cc
Q psy15599 85 RK 86 (2347)
Q Consensus 85 ~~ 86 (2347)
..
T Consensus 88 ~~ 89 (93)
T 2d07_B 88 QQ 89 (93)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 309
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=38.51 E-value=91 Score=33.14 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=48.7
Q ss_pred ceeEEEEecCCceEEEeCCc-cceeeeeeccccceeeee--CceEEEEeCCCcCc--EEEEech-HHHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERT-KEIMKTWPLTTVRRWGAS--SNVFTLDFGDYSDN--YYSVQTT-EAEQIQQLIA 400 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~t-kevl~~~~~~~I~~w~~~--~~~f~I~~~d~~~~--~f~~~T~-q~k~I~~LI~ 400 (2347)
+.++.|-|++.||.+.+.++ ++++..++...|.-.+++ ++.|.+...+..+. .+.|.+. .+..|..-|.
T Consensus 53 ~~~v~l~Vs~~gi~v~~~~~~~~~l~~~~l~~ISFc~~d~~~k~FaFI~~~~~~~f~CHvF~c~~~A~~vs~aV~ 127 (136)
T 1wgu_A 53 WPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQ 127 (136)
T ss_dssp SCEEEEEEETTEEEEECSSCSSCEEEEEETTTEEEEEECSSTTCEEEEEECSSSCEEEEEEECSSCTHHHHHHHH
T ss_pred CceEEEEEccCEEEEEecCCCCceeccceEEEeeeEecCCCCcEEEEEEcCCCccEEEEEEEcCcchHHHHHHHH
Confidence 46799999999999999987 488899998888766664 36787777655322 4445443 2556666554
No 310
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=38.45 E-value=1.9e+02 Score=31.49 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=62.4
Q ss_pred hhhhhhHHHHHHHHhhhhhHHhhhh---hhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhccCC-----CChhhHHHHHH
Q psy15599 1660 KSMSGLSSQLTHQYSKLCTDCIGAV---ASASNPEVSGRLCGAVHDLGTACINTVTMAATCQTS-----GDDYTHREFAD 1731 (2347)
Q Consensus 1660 ~~l~~~~~~~s~~~~~l~~~a~~a~---~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~~~~-----~d~~t~~~l~~ 1731 (2347)
.+|...+..+-.-...+..-|+|+. +.+.|..+..+|+.+.+.|.++-..|+......-.+ ..+.--..+.-
T Consensus 55 ~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~~L~~kl~r~Lq~l~ds~qiL~~~~~~Ld~~~~~~~~~~DdLDrfVm 134 (163)
T 1z23_A 55 QDLKAAVAAVHGAVHELLEFARSAVSSATHTSDRTLHAKLSRQLQKMEDVYQTLVVHGQVLDSGRGGPGFTLDDLDRLVA 134 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHHccCCCCCCCcchHHHHHH
Confidence 3444444445444555555555555 556666699999999999999988888753332222 24455788888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy15599 1732 TNRVLAEKVSQVLYALQA 1749 (2347)
Q Consensus 1732 ~ar~v~e~v~~l~aal~~ 1749 (2347)
++|.|-|=+++|.+.|+.
T Consensus 135 vaR~vpdD~kqlas~I~~ 152 (163)
T 1z23_A 135 CSRAVPEDAKQLASFLHG 152 (163)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHh
Confidence 999999999999998853
No 311
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=37.81 E-value=47 Score=42.56 Aligned_cols=74 Identities=12% Similarity=0.197 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHhhHHHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Q psy15599 1330 AIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRLRELDEV 1403 (2347)
Q Consensus 1330 ~i~~ss~~ll~tAk~la~~P~dp~~~q~La~aaraVsdsI~~Lv~a~~~~-aPGQkECd~Ai~~l~~~i~~ld~~ 1403 (2347)
++.....++..+-..++.+|.|+.+++.+...+.++.+.+|.+-..+.+. .-=..+....+.+||.++.+|...
T Consensus 41 gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~L 115 (463)
T 2d4y_A 41 SLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANL 115 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667789999999999999999999999999999999999997777663 223366777888888776665543
No 312
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=37.50 E-value=35 Score=44.83 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=49.5
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRN 69 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~t 69 (2347)
.+.++|++.|+ ..+++.+++.+++.+++..+.+++...+ .++.||||... +...+||.++..
T Consensus 216 ~~~~~V~l~dg-~~~~~~v~~~tt~~el~~~v~~~lgL~e--~~~~FgL~~~~--~~~~~~L~~~~~ 277 (555)
T 3au4_A 216 EMTSTVYCHGG-GSCKITINSHTTAGEVVEKLIRGLAMED--SRNMFALFEYN--GHVDKAIESRTV 277 (555)
T ss_dssp CEEEEEEETTS-CEEEEEECTTCBHHHHHHHHHHHTTCTT--CCSEEEEEEES--SSCEEECCTTSB
T ss_pred CcceEEEecCC-CeEEEEeCCCCcHHHHHHHHHHHcCCCC--CCCceEEEEEe--CCeeEecCCCCc
Confidence 46789999866 5689999999999999999999998762 37889999743 345678877544
No 313
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=37.29 E-value=4.2e+02 Score=28.49 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=64.1
Q ss_pred HHHHHhHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhhHHHHHHHHHHHHHHHHHHH
Q psy15599 648 LLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVA 727 (2347)
Q Consensus 648 ll~AA~~l~~a~~~Ll~~i~e~~~~e~~d~L~~~AkaVa~Ata~Lv~~ak~~~~~~~~~~q~~li~aA~~~a~ats~Lv~ 727 (2347)
+.++.-.|..+.-.|-+-+... ..+..+.+.|.|+.+...|+.-.-..-+...+..|..|..+=+.+-.--.+||.
T Consensus 24 VY~at~~VVkaV~~Ls~~v~~a----~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs 99 (153)
T 3gm3_A 24 VYLNVMELVRAVLELKNELAQL----PPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELIN 99 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhc----ChHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333222 123445566666666666555433222222234444444444445555567776
Q ss_pred HHHHhcc---CCCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15599 728 CTKVVAP---TLENPACQQQLMAAVKEVANAVEGLVAMCNE 765 (2347)
Q Consensus 728 ~Ak~vA~---ti~~p~~qeqLi~Aak~va~at~~Lv~aa~~ 765 (2347)
.-|.... |.-+.+|+.+++.+|--+|.-.-+|..+.+.
T Consensus 100 ~MkLAqq~~~TtL~eEyrr~MLsaaH~LA~DaKNLlD~VD~ 140 (153)
T 3gm3_A 100 KMRLAQQNAVTSLSEECKRQMLTASHTLAVDAKNLLDAVDQ 140 (153)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 5568889999999998888888888876543
No 314
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=37.13 E-value=38 Score=35.58 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=38.0
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..-.|.|+||||+.+.-.+..+.|+.+|...|.....=.....|.|+..
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~ 99 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTT 99 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEET
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecC
Confidence 3456999999999999999999999999999988742112355777654
No 315
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=36.34 E-value=46 Score=31.11 Aligned_cols=68 Identities=10% Similarity=0.149 Sum_probs=49.4
Q ss_pred EEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 5 SLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 5 ~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
.|+|.-.+ +....+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|++.+|+.++.
T Consensus 3 ~lkV~~~~-g~~v~~~v~~~t~l~kl~~~y~~~~gi~----~~~~rf~f-d-----G~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 3 NLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLS----MRQIRFRF-D-----GQPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEECTT-SCEEEEEECTTSCTHHHHHHHHHHHTCC----TTTCEEEE-T-----TEECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCC----cceEEEEE-C-----CEEcCCCCCHHHcCCCCCCEEEE
Confidence 44444333 4567899999999999999999986643 34444444 2 34578889999999999988874
No 316
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=36.21 E-value=60 Score=31.33 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=52.5
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCcccc-ccccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGV-WLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~-WL~~~~tL~~y~l~~~~~L~ 82 (2347)
-.|.|+++++. ...-+|..+.+|.++..+|... .. ++..|-|.- .. |.+.. ..+.+++|+..++.+...|.
T Consensus 8 ~~i~iRlpdG~-r~~~~F~~~~tl~~v~~fv~~~-~~----~~~~f~L~t-~f-Prk~l~~~d~~~TL~e~gL~p~a~L~ 79 (84)
T 3qx1_A 8 SKLRIRTPSGE-FLERRFLASNKLQIVFDFVASK-GF----PWDEYKLLS-TF-PRRDVTQLDPNKSLLEVKLFPQETLF 79 (84)
T ss_dssp EEEEEECTTSC-EEEEEEETTSBHHHHHHHHHHT-TC----CTTTEEEEC-SS-SCCBGGGSCTTSBTTTTTCCSEEEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCCCHHHHHHHHHHc-CC----CCCCeEEEe-CC-CCCCCcCCCCCCCHHHCCCCCCCEEE
Confidence 45777887764 4578999999999999999872 22 457787763 23 55543 34568899999998877776
Q ss_pred cc
Q psy15599 83 YR 84 (2347)
Q Consensus 83 ~~ 84 (2347)
..
T Consensus 80 ve 81 (84)
T 3qx1_A 80 LE 81 (84)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 317
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=36.20 E-value=57 Score=33.41 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=52.2
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|.-.+. -...+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|.+..++.|++
T Consensus 27 I~IkVk~~~g-~~i~fkVk~~t~l~kL~~ay~ek~gi~----~~~~rfiF-d-----G~~L~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 27 VAVKVVNADG-AEMFFRIKSRTALKKLIDTYCKKQGIS----RNSVRFLF-D-----GTPIDETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp EEEEEEETTS-CCEEEEECTTSSHHHHHHHHHHHHTCC----SSSCEEES-S-----SCBCCSSSHHHHHHCSSEEEEEE
T ss_pred EEEEEECCCC-CEEEEEECCCChHHHHHHHHHHHhCCC----cccEEEEE-C-----CEEcCCCCCHHHcCCCCCCEEEE
Confidence 4555554333 456899999999999999999986543 34444444 2 34577889999999999998886
Q ss_pred ccc
Q psy15599 84 RRK 86 (2347)
Q Consensus 84 ~~~ 86 (2347)
...
T Consensus 96 ~~~ 98 (110)
T 2k8h_A 96 MVE 98 (110)
T ss_dssp ECC
T ss_pred EEc
Confidence 544
No 318
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.94 E-value=80 Score=31.83 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=36.1
Q ss_pred ceeEEEEeCCC---cEEEEEEcC---------CCcHHHHHHHHHHHh--CCCCCCc-ceeEEe
Q psy15599 87 MRTLKVRMLDG---TLKTLLVDD---------SQPVANLMVVICTKI--GITNHDE-YSLVRE 134 (2347)
Q Consensus 87 ~r~lkV~L~DG---~~~~v~Vd~---------sttv~evv~~Ic~~L--GL~~~e~-FsL~~~ 134 (2347)
...|.|..+++ ...++.|+. ..||.++-..|+.+. |+.. +. .-|++.
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~-~~~qrLi~~ 73 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPD-PELIDLIYC 73 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCC-SSSEEEEET
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCCh-hhcEEEEEC
Confidence 35688889999 778888554 499999999999999 8874 34 556543
No 319
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=35.80 E-value=7.7 Score=40.79 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=0.0
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~ 125 (2347)
.|.|..++|...++.|+++.||.++-..|....|++.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (128)
T ss_dssp -------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcCh
Confidence 3568888999999999999999999999999998864
No 320
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=35.33 E-value=47 Score=44.88 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=45.1
Q ss_pred ceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecCCcc
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDE 139 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~~~e 139 (2347)
...++||++|.+++++.+...+|+.+|+..+++++|+.+ +|+|+.....++
T Consensus 352 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~v~~~~~ 402 (694)
T 3cf6_E 352 EVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGE--GLIIVKMNSGGE 402 (694)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCS--CEEEEEECTTSC
T ss_pred ceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcc--cceEEEEeecCc
Confidence 456899999999999999999999999999999999754 699998875444
No 321
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=35.30 E-value=76 Score=38.35 Aligned_cols=48 Identities=29% Similarity=0.322 Sum_probs=39.3
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
+....|.|..++|....+.|+.+.||.++-..|..+.||+. +..-|++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~-~~QRLi~ 278 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF 278 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-HHEEEEe
Confidence 44566889999999999999999999999999999999864 3344443
No 322
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=35.09 E-value=49 Score=33.66 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=51.7
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
+.|+|.- .+.+..+++.+++.+..++....++...+ ++..-|++ + |.-|.+..|.+.|++..++.|+.
T Consensus 32 I~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~----~~~~rF~F-d-----G~rl~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 32 INLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKE----MDSLRFLY-D-----GIRIQADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp EEEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCC----GGGEEEEE-T-----TEECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCC----cccEEEEE-C-----CeEcCCCCCHHHcCCCCCCEEEE
Confidence 4444443 56678899999999999999999987643 45444444 2 34577888999999999998876
Q ss_pred cc
Q psy15599 84 RR 85 (2347)
Q Consensus 84 ~~ 85 (2347)
..
T Consensus 100 ~~ 101 (106)
T 2eke_C 100 HR 101 (106)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 323
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=34.61 E-value=80 Score=32.65 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=41.8
Q ss_pred ceeEEEE--eCCCcEEEEEEcCCCcHHHHHHHHHHHhCCC-------CCCcceeEEec
Q psy15599 87 MRTLKVR--MLDGTLKTLLVDDSQPVANLMVVICTKIGIT-------NHDEYSLVREN 135 (2347)
Q Consensus 87 ~r~lkV~--L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~-------~~e~FsL~~~~ 135 (2347)
...+.|| .||--++.|.|+..+|++||+.++..++|.. ++..|-|....
T Consensus 7 tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev 64 (117)
T 2c5l_C 7 SFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEV 64 (117)
T ss_dssp EEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEE
T ss_pred eEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEE
Confidence 4456777 6778899999999999999999999999974 46899999875
No 324
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=33.71 E-value=48 Score=33.53 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=33.2
Q ss_pred eeEEEEeCCCcEEEEEEc-CCCcHHHHHHHHHHHhCCCC
Q psy15599 88 RTLKVRMLDGTLKTLLVD-DSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd-~sttv~evv~~Ic~~LGL~~ 125 (2347)
..|+|+-++|.. .+.|+ ++.|+.++...|..++|+..
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 468999999977 79999 99999999999999999854
No 325
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=32.87 E-value=98 Score=30.97 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=41.1
Q ss_pred cccceeEEEEeCCCc-EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 84 RRKMRTLKVRMLDGT-LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~-~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.+.+..|+|.-.||. .+.+.|..+++...|+...|++.|+... .+.|++.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~-~vrF~FD 72 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGR-KLSFFFD 72 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSS-CCEEEET
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcc-cEEEEEC
Confidence 445678889989995 8999999999999999999999999643 4555553
No 326
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.57 E-value=2.4e+02 Score=28.89 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=43.9
Q ss_pred ccceeEEEEeCCCc---EEEEEEcCCCcHHHHHHHHHHHhCCCC--CCcceeEEecCC
Q psy15599 85 RKMRTLKVRMLDGT---LKTLLVDDSQPVANLMVVICTKIGITN--HDEYSLVRENPE 137 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~---~~~v~Vd~sttv~evv~~Ic~~LGL~~--~e~FsL~~~~~~ 137 (2347)
+....|+|.+-+.. ++.|.+.....+..|+.....+.+|.. ++.|.|+...++
T Consensus 26 ~d~~IIRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~ 83 (115)
T 1rax_A 26 GDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSD 83 (115)
T ss_dssp SCEEEEEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSS
T ss_pred CCeEEEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCC
Confidence 44556778776533 899999999999999999999999974 689999998763
No 327
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.17 E-value=1.5e+02 Score=28.67 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=35.4
Q ss_pred ceeEEEEeCCCcEEEEEEcCC-----CcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 87 MRTLKVRMLDGTLKTLLVDDS-----QPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v~Vd~s-----ttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
...|.|.. .|...++.|+.. .||.++-..|....|++ ++..-|++
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip-~~~qrL~~ 56 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP-QSFQKLIF 56 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC-TTTCEEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC-HHHEEEEE
Confidence 35677776 477789999985 99999999999999987 44555554
No 328
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=30.40 E-value=1.1e+02 Score=29.82 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=34.8
Q ss_pred ceeEEEEeCCCcEEEE-EEcCCCcHHHHHHHHHHHhCCCCCCcceeE
Q psy15599 87 MRTLKVRMLDGTLKTL-LVDDSQPVANLMVVICTKIGITNHDEYSLV 132 (2347)
Q Consensus 87 ~r~lkV~L~DG~~~~v-~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~ 132 (2347)
...|+|.. .|...++ .|+.+.|+.++-..|..+.|++. +..-|+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~-~~QkLi 51 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP-ERQKLL 51 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT-TTCEEE
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH-HHeEEE
Confidence 34577775 7888889 99999999999999999999963 333444
No 329
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=29.27 E-value=1.5e+02 Score=30.69 Aligned_cols=44 Identities=18% Similarity=0.078 Sum_probs=32.9
Q ss_pred eeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..|+|+-. .+..++.|+++.||.+|-..|..+.||+. +..-|++
T Consensus 3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~egIP~-~qQrLi~ 46 (118)
T 2fnj_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPP-EEQRLYK 46 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHHhCCCH-HHeEEEE
Confidence 34555432 24688999999999999999999999863 4556654
No 330
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=29.19 E-value=82 Score=31.57 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=41.2
Q ss_pred eeEEEEeCC-------CcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCc----ceeEEecCCc
Q psy15599 88 RTLKVRMLD-------GTLKTLLVDDSQPVANLMVVICTKIGITNHDE----YSLVRENPED 138 (2347)
Q Consensus 88 r~lkV~L~D-------G~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~----FsL~~~~~~~ 138 (2347)
..+||++-+ +....+.|.+..+-.+++..|.++|+++..+. +.|.|.++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdG 67 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDG 67 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSS
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCC
Confidence 568888864 45789999999999999999999999964333 7888887643
No 331
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=28.74 E-value=1.3e+02 Score=29.30 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=40.4
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEecC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~~~ 136 (2347)
+...++||+- -++.|.|....+..++...|+++|++. .+.--|.|..+
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEEeeCC
Confidence 4468999998 489999999999999999999999998 55667777654
No 332
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=28.52 E-value=97 Score=30.01 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=53.6
Q ss_pred EEEEEec---CCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcccc
Q psy15599 6 LKICIVD---RNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 6 L~v~~~~---~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~ 82 (2347)
+.|.|.= .+-+.-+|+--.+++..++..+.+-+..... +.+.|-+-. ..|+.-|.....|..|++.+|+.|+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~-~~~~~~irv----~NK~~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMP-PREGHWIRV----VNKDKVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSC-CCTTCEEEE----GGGTEEEETTSBTGGGTCCTTCEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcC-CCCCCEEEE----ecCCEEEcCCCEEeeCCcCCCCEEE
Confidence 4455532 3467788899999999999999998877621 222242222 5678888999999999999999886
Q ss_pred c
Q psy15599 83 Y 83 (2347)
Q Consensus 83 ~ 83 (2347)
.
T Consensus 80 i 80 (81)
T 2bps_A 80 I 80 (81)
T ss_dssp E
T ss_pred E
Confidence 4
No 333
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.91 E-value=1.1e+02 Score=29.95 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=32.6
Q ss_pred eeEEEEeCCCcE--EEE-EEcCCCcHHHHHHHHHHH-hCCCCCCcceeE
Q psy15599 88 RTLKVRMLDGTL--KTL-LVDDSQPVANLMVVICTK-IGITNHDEYSLV 132 (2347)
Q Consensus 88 r~lkV~L~DG~~--~~v-~Vd~sttv~evv~~Ic~~-LGL~~~e~FsL~ 132 (2347)
..|.|..+.|.. .++ .|+++.||.++-..|.+. -|+. ++...|.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~-~~~QrL~ 58 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY-PARQSLR 58 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC-TTTCCEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC-hHHeEEE
Confidence 567788887765 368 899999999999999995 5774 3333443
No 334
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=27.84 E-value=85 Score=32.77 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=53.2
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccc-cccCCchhhhhccCCcccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVW-LEPGRNLEYYILRNGDELE 82 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~W-L~~~~tL~~y~l~~~~~L~ 82 (2347)
..|.|+++++. ...-+|.++.+|.+|..+|... . .++..|-|+- .. |.|-.. .+..++|...++.+...|.
T Consensus 44 t~IqIRlPdG~-rl~~rF~~~~tl~~V~~fV~~~---~--~~~~~F~L~t-~f-Prk~l~~~d~~~TL~e~gL~psa~Li 115 (124)
T 1wj4_A 44 AQLMLRYPDGK-REQITLPEQAKLLALVKHVQSK---G--YPNERFELLT-NF-PRRKLSHLDYDITLQEAGLCPQETVF 115 (124)
T ss_dssp EEEEEECTTSC-EEEEEEETTSCHHHHHHHHHHH---H--CCTTTEEEEC-SS-SCCEETSSCSSSCTTTTTCCSSBCCE
T ss_pred EEEEEECCCCC-EEEEEeCCCCCHHHHHHHHHhc---C--CCCCCeEEec-CC-CCcCCccCCCCCCHHHCCCCCceEEE
Confidence 45777888764 5678999999999999999875 2 2457787765 23 555433 4568999999988777766
Q ss_pred ccc
Q psy15599 83 YRR 85 (2347)
Q Consensus 83 ~~~ 85 (2347)
+.+
T Consensus 116 v~~ 118 (124)
T 1wj4_A 116 VQE 118 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 335
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=27.63 E-value=1.4e+02 Score=33.86 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=40.0
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..+..|+|. .+|..+.++|..+++...++...|++.|+.. .-+.|++.
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~-~~~RF~Fd 74 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYD 74 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG-GGEEEEET
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh-hhEEEEEC
Confidence 457789997 4999999999999999999999999999953 44555553
No 336
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=27.56 E-value=84 Score=38.22 Aligned_cols=68 Identities=13% Similarity=0.038 Sum_probs=47.7
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCc-cccccccCCchhhhhccCCccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVK-KGVWLEPGRNLEYYILRNGDEL 81 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~-k~~WL~~~~tL~~y~l~~~~~L 81 (2347)
+.++|.+ .+-+.++.+.|+.+|.++-..|.++...+ +..--|.. .+ +|..|..+.+|..|++.+|.++
T Consensus 6 i~i~Vk~--~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp----p~~QkLi~----~k~~Gk~l~D~~~L~~~~ik~g~~l 74 (320)
T 3shq_A 6 VVVIVKW--SGKEYPVDLTDQDTVEVLRHEIFRKTQVR----PERQKLLN----LKYKGKTAADNVKISALELKPNFKL 74 (320)
T ss_dssp EEEEEEE--TTEEEEEEEETTSBHHHHHHHHHHHHCCC----GGGCEETT----CBSSSSBCCTTSBTTSSCCC--CEE
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcC----HHHeEEee----cccCCcccCccccHHHcCCCCCCEE
Confidence 4555554 66778899999999999999999987654 23333442 11 4667888899999998777543
No 337
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=27.52 E-value=74 Score=39.47 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=37.4
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhC---CCCCCcceeEE
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIG---ITNHDEYSLVR 133 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LG---L~~~e~FsL~~ 133 (2347)
....|.|+.++|...+|.|+.+.||.+|-..|..+.| |. .+..-|++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip-~~~QrLiy 55 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP-VAGQKLIY 55 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC-STEEEEES
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC-hhheEEEE
Confidence 3467889999999999999999999999999999654 43 34455544
No 338
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=27.48 E-value=13 Score=40.41 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=0.0
Q ss_pred eEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC
Q psy15599 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 89 ~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~ 125 (2347)
.|.|..++|....+.|+++.||.++-..|....||+.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~ 38 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (152)
T ss_dssp -------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 4668888999999999999999999999999999854
No 339
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=26.09 E-value=98 Score=34.32 Aligned_cols=68 Identities=10% Similarity=0.171 Sum_probs=47.2
Q ss_pred ceeEEEEecCCceEEEeCCc-cceeeeeeccccceeeeeC--ceEEEEeCCCcC--cEEEEech-HHHHHHHHH
Q psy15599 332 LVPRLLGVTKDSVLRLDERT-KEIMKTWPLTTVRRWGASS--NVFTLDFGDYSD--NYYSVQTT-EAEQIQQLI 399 (2347)
Q Consensus 332 ~~~vlLGI~~~GI~ild~~t-kevl~~~~~~~I~~w~~~~--~~f~I~~~d~~~--~~f~~~T~-q~k~I~~LI 399 (2347)
+.++.|-|++.||.+++..+ ++++..+++..|.-.+++. +.|-+...+..+ ..+.|.+. .+..|..-|
T Consensus 99 ~~~V~L~VS~~gI~v~d~~t~~evl~~c~l~~ISFcgvd~d~k~FaFI~~~~~~~f~CHVF~cek~A~~ls~aI 172 (176)
T 2yt0_A 99 WPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAV 172 (176)
T ss_dssp SCEEEEECGGGEEEEEESSCTTCEEEEEETTTCCEEEECSSTTEEEEEEEEETTEEEEEEEEESSCSHHHHHHH
T ss_pred CcceEEEEcCCEEEEEecCCCcceecccceEEeeeEccCCCCcEEEEEEeCCCCCEEEEEEEccCChhHHHHHH
Confidence 46799999999999999987 6889999988887666643 677776654422 24444433 245555544
No 340
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.73 E-value=1.1e+02 Score=29.76 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=47.9
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccC
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRN 77 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~ 77 (2347)
+-|-|+.... ..--+|+.|...+.+++-.|.+|.+-. +..|-|+- |.+...-|+-.|+|+.|+++.
T Consensus 11 vRLvVNy~~t-QKtVvRVSP~vpL~ellp~IC~Kcefd----p~~~~Ll~---d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKT-QKTIVRVSPHASLQELAPIICSKCEFD----PLHTLLLK---DYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTT-EEEEEEECSSSCTTTHHHHHHHHTTCC----TTSEEEES---CSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCc-ceeEEEeCCCCcHHHHHHHHhhcccCC----hhhEEEec---CCCCCcccchhcchhhhhhhh
Confidence 3344555332 344579999999999999999998654 45565554 345566788899999999863
No 341
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=25.43 E-value=2.5e+02 Score=30.94 Aligned_cols=91 Identities=5% Similarity=0.039 Sum_probs=63.1
Q ss_pred chhhhhhHHHHHHHHhhhhhHHhhh---hhhCCChhhhhHHHHHHhhHHHHHHHHHHHHhhc-----------cCC--CC
Q psy15599 1659 VKSMSGLSSQLTHQYSKLCTDCIGA---VASASNPEVSGRLCGAVHDLGTACINTVTMAATC-----------QTS--GD 1722 (2347)
Q Consensus 1659 ~~~l~~~~~~~s~~~~~l~~~a~~a---~~~~~~~~~~~~i~~~~~~l~~s~~~lv~aa~~~-----------~~~--~d 1722 (2347)
..+|...+..+-.-...+..-|+|+ ++.+.|..+..+|+.+.+.|.++-.-|+...... ... ..
T Consensus 58 i~~I~~a~~~v~~Sl~efL~FArga~~nA~~~~d~~L~~kl~rqLq~l~ds~qiL~~~~~~Ld~~~Wsl~~La~~~~~~~ 137 (176)
T 2l81_A 58 INEIRTAVDKVELFLKEYLHFVKGAVANAACLPELILHNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNK 137 (176)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHTTCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHccCCCCCC
Confidence 4455555555555555555555555 4666777799999999999999988888642211 011 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15599 1723 DYTHREFADTNRVLAEKVSQVLYALQA 1749 (2347)
Q Consensus 1723 ~~t~~~l~~~ar~v~e~v~~l~aal~~ 1749 (2347)
+.--.++.-++|.|.|=+++|.+.|+.
T Consensus 138 ~DdLDrfVmvaR~vPdD~kqlas~I~~ 164 (176)
T 2l81_A 138 CDDLDRFVMVAKTVPDDAKQLTTTINT 164 (176)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhhccCCHHHHHHHHHHHh
Confidence 445678889999999999999998854
No 342
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane protein; 2.00A {Homo sapiens}
Probab=25.21 E-value=3.6e+02 Score=28.16 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=54.2
Q ss_pred CCCCcEEEEEEEccCCCCcceeEEEEecCCceEEEeCCcc---------ceeeeeeccccceeeeeC------ceEEEEe
Q psy15599 313 PTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTK---------EIMKTWPLTTVRRWGASS------NVFTLDF 377 (2347)
Q Consensus 313 p~YG~t~F~Vk~k~~g~~~~~~vlLGI~~~GI~ild~~tk---------evl~~~~~~~I~~w~~~~------~~f~I~~ 377 (2347)
|.| .-|.|..+.+ -....++.|||.-+-|++....++ .-..+++++.|....+.. ..|.|.+
T Consensus 13 ~~Y--ksy~V~rk~~-mr~~te~~L~IdGd~ihI~P~~~~k~~~kf~~~~K~ts~~~~~Vv~Ckvs~~~p~s~~~Fklv~ 89 (125)
T 3voq_A 13 HHY--KSFKVSMIHR-LRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPSHAIFKLTY 89 (125)
T ss_dssp TSC--EEEEEEEEET-TTEEEEEEEEECSSEEEEEECC------CSBCCCCCEEEEGGGEEEEEEEEECSSSCEEEEEEE
T ss_pred Ccc--eEEEEEEEcc-ceeceeEEEEecCcEEEEeeccCCccccccccCCcceEEeecceEEEEeeccCCCCcceEEEEE
Confidence 445 4566654311 122368999999999999875322 123477888888776643 5788877
Q ss_pred C-CCcCcEEEEechHHHHHHHHHHHHHHHHHhhh
Q psy15599 378 G-DYSDNYYSVQTTEAEQIQQLIAGYIDIILKKK 410 (2347)
Q Consensus 378 ~-d~~~~~f~~~T~q~k~I~~LI~gYi~l~lk~r 410 (2347)
- +.....|-|++.. . ...=|..=++.|+.-|
T Consensus 90 ~~~~~~KryDFEa~~-~-~A~EIV~kin~ILe~r 121 (125)
T 3voq_A 90 LSNHDYKHLYFESDA-A-TVNEIVLKVNYILESR 121 (125)
T ss_dssp EETTEEEEEEEEECH-H-HHHHHHHHHHHHHHTC
T ss_pred eCCCCcccceeEcCc-c-cHHHHHHHHhhheeec
Confidence 3 2323467777665 2 2222344455666443
No 343
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=24.94 E-value=92 Score=34.93 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=39.3
Q ss_pred ccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..+..|+|. .||..+.++|..+++...|+...|++.||.. .-+.|++
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~-~sIRFLF 101 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLTFLY 101 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG-GGSCEEE
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc-ccEEEEE
Confidence 346789997 5999999999999999999999999999865 3445444
No 344
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=24.68 E-value=1.7e+02 Score=30.74 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=31.4
Q ss_pred cceeEEEEeCCCcEE-EEEEcCCCcHHHHHHHHHHHh
Q psy15599 86 KMRTLKVRMLDGTLK-TLLVDDSQPVANLMVVICTKI 121 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~-~v~Vd~sttv~evv~~Ic~~L 121 (2347)
.+..|+|++++|+.. .+.+++++||.+|-..|....
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~ 51 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEW 51 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhc
Confidence 567899999999777 799999999999999997654
No 345
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=24.64 E-value=2.5e+02 Score=27.19 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=41.5
Q ss_pred cceeEEEEe--CCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC--CcceeEEecC
Q psy15599 86 KMRTLKVRM--LDGTLKTLLVDDSQPVANLMVVICTKIGITNH--DEYSLVRENP 136 (2347)
Q Consensus 86 ~~r~lkV~L--~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~--e~FsL~~~~~ 136 (2347)
++..++|.| ..|+...++|....|+.+++..+.+-++|..+ ++|.+-..+.
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK 57 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNK 57 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGG
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecC
Confidence 566777887 68889999999999999999999999999753 4576655543
No 346
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=24.00 E-value=1e+03 Score=28.72 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=38.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15599 825 DAPEMVRQARILGQATAQLIQAIKGDAENEPDSEL-QRRLLAAAKNLAEATARMVEAARQ 883 (2347)
Q Consensus 825 ~a~~mv~~Ak~va~a~~~Lv~~~k~~A~~~~d~~~-~~~Ll~aAk~La~ats~LV~aaK~ 883 (2347)
.-.+++..-..|+.-+|.|-..+-.+|.+..+..+ ---+-+-.|.|++-|.+-...++.
T Consensus 147 ~I~~i~~~I~~IA~QTNLLALNAaIEAARAGE~GrGFAVVAdEVRkLAe~t~~at~~I~~ 206 (341)
T 3zx6_A 147 KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKS 206 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666788999999998888888887776433 334555566666555555444443
No 347
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.65 E-value=1.5e+02 Score=29.18 Aligned_cols=44 Identities=7% Similarity=0.116 Sum_probs=34.6
Q ss_pred eeEEEEeCCCcEE-EEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEE
Q psy15599 88 RTLKVRMLDGTLK-TLLVDDSQPVANLMVVICTKIGITNHDEYSLVR 133 (2347)
Q Consensus 88 r~lkV~L~DG~~~-~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~ 133 (2347)
..|+|.+ .|... .+.|+.+.|+.++-..|....|+.. +..-|++
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~-~~QkLi~ 52 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQP-ARQKVMV 52 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCT-TTSCCEE
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEE
Confidence 5677775 67888 6999999999999999999999973 3334443
No 348
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=23.01 E-value=3.6e+02 Score=26.61 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=37.3
Q ss_pred ccceeEEEEeCCCc--EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 85 RKMRTLKVRMLDGT--LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~--~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.....+.|....+. ..++.|+++.||.++-..|..+.||+.. .--|++.
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~-~QrL~~~ 63 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAG-TMKVQVF 63 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTT-TEEEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHH-HeEEEEe
Confidence 34456777776664 7899999999999999999999999753 3344443
No 349
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=22.82 E-value=1.6e+02 Score=29.34 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=37.3
Q ss_pred cccceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCCC
Q psy15599 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNH 126 (2347)
Q Consensus 84 ~~~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~~ 126 (2347)
...+..|+|. -+|....++|..+++.+.++...|++.|+...
T Consensus 18 ~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~ 59 (95)
T 2l76_A 18 TPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPS 59 (95)
T ss_dssp CCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGG
T ss_pred CCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChh
Confidence 3456889999 58999999999999999999999999999754
No 350
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=22.67 E-value=6.9e+02 Score=26.32 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchhHhhHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy15599 967 ELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARS 1046 (2347)
Q Consensus 967 ~L~~aA~~L~~a~~~lv~~~~~~~~L~~~sk~~a~~~~~L~~~~~~~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa 1046 (2347)
+...-...+..-..+++.+.... ....|+-...++.-++.+|+.--+.....-.+=.+++.+...+..|...++.
T Consensus 18 ~Vvr~TE~ITk~IqeLl~AaQ~~-----~~~sfvpcserI~~AV~el~aLfp~~p~~etvr~sL~~L~~~a~~Lq~EC~~ 92 (135)
T 2jx0_A 18 DVILKTEQVTKNIQELLRAAQEF-----KHDSFVPCSEKIHLAVTEMASLFPKRPALEPVRSSLRLLNASAYRLQSECRK 92 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSCSSBCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----ccCccccHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444555556666665222 3778888889999999999886432225566667888888888999988887
Q ss_pred hcCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15599 1047 AALDP-----SASNSKSQLSAAARNVADSINNLLNICTS 1080 (2347)
Q Consensus 1047 ~~~~p-----~d~~a~~qL~~aAr~l~~sin~Lv~a~~~ 1080 (2347)
..+.. ..+...+|+-+||=.++-+..+||+..++
T Consensus 93 ~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~~ 131 (135)
T 2jx0_A 93 TVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTR 131 (135)
T ss_dssp CCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 64332 23556778999999999999999996554
No 351
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=22.60 E-value=3.5e+02 Score=35.09 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=75.6
Q ss_pred CeeEEEEecCCCcHHHHHHHHHhhcCcccCCCcccccccccc----CCCccccccccCCchhhhhccC----Ccccccc-
Q psy15599 14 NVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSD----GDVKKGVWLEPGRNLEYYILRN----GDELEYR- 84 (2347)
Q Consensus 14 ~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~----~~~~k~~WL~~~~tL~~y~l~~----~~~L~~~- 84 (2347)
....++++...|+..+++..+-+++... .+|=.||.. ..|+...=+....+|..+.... -+.|+|.
T Consensus 252 ~~~F~l~Ls~~~~Y~~la~~va~~l~~d-----P~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Yev 326 (530)
T 2ylm_A 252 DPGFVVTLSNRMNYFQVAKTVAQRLNTD-----PMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQ 326 (530)
T ss_dssp CCCEEEEEETTCCHHHHHHHHHHHHTSC-----GGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhCCC-----chhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEE
Confidence 4668999999999999999999998664 233355533 1222211122234554433221 1345542
Q ss_pred -----c---cceeEEEEeCCCc----EEEEEEcCCCcHHHHHHHHHHHhCCCC--CCcceeEEec
Q psy15599 85 -----R---KMRTLKVRMLDGT----LKTLLVDDSQPVANLMVVICTKIGITN--HDEYSLVREN 135 (2347)
Q Consensus 85 -----~---~~r~lkV~L~DG~----~~~v~Vd~sttv~evv~~Ic~~LGL~~--~e~FsL~~~~ 135 (2347)
+ ..+.++|++.+.. ...+.+....||.|++..+.+++++.+ ...+-||...
T Consensus 327 L~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~ 391 (530)
T 2ylm_A 327 LKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIV 391 (530)
T ss_dssp CSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEE
T ss_pred CCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEE
Confidence 1 4567888777543 556777889999999999999999974 4566666553
No 352
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.14 E-value=1.2e+02 Score=29.94 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=33.4
Q ss_pred cceeEEEEeCCCcEEEEEEcCCCcHHHHHHHHHHHhCCCC
Q psy15599 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITN 125 (2347)
Q Consensus 86 ~~r~lkV~L~DG~~~~v~Vd~sttv~evv~~Ic~~LGL~~ 125 (2347)
+...|+|.+ +|....+.|+.+.||.++-..|..+.|++.
T Consensus 16 ~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 346677874 688889999999999999999999999863
No 353
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=21.91 E-value=5.2e+02 Score=25.27 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=39.9
Q ss_pred eEEEEeCC--Cc-EEEEEEcCCCcHHHHHHHHHHHhCCC-C-CCcceeEEecCC
Q psy15599 89 TLKVRMLD--GT-LKTLLVDDSQPVANLMVVICTKIGIT-N-HDEYSLVRENPE 137 (2347)
Q Consensus 89 ~lkV~L~D--G~-~~~v~Vd~sttv~evv~~Ic~~LGL~-~-~e~FsL~~~~~~ 137 (2347)
.++|.+-+ |. ++.|.+.....+..++.....+.+|. + ++.|.|+...++
T Consensus 5 iiRVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~ 58 (87)
T 1lfd_A 5 IIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISE 58 (87)
T ss_dssp EEEEEESSCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSS
T ss_pred EEEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCC
Confidence 35555543 33 88999999999999999999999997 3 699999998753
No 354
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.22 E-value=78 Score=38.62 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=39.3
Q ss_pred ceeEEEEeCCCc-------------EEEEEEcCCCcHHHHHHHHHHHhCCCC-CCcceeEEecC
Q psy15599 87 MRTLKVRMLDGT-------------LKTLLVDDSQPVANLMVVICTKIGITN-HDEYSLVRENP 136 (2347)
Q Consensus 87 ~r~lkV~L~DG~-------------~~~v~Vd~sttv~evv~~Ic~~LGL~~-~e~FsL~~~~~ 136 (2347)
...|+|+++|.+ .-.+.+|...+..+++..||+.+++++ .+.|+|.+...
T Consensus 15 ~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~ 78 (339)
T 3dad_A 15 VVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPS 78 (339)
T ss_dssp EEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTT
T ss_pred eeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCC
Confidence 345666666543 235678899999999999999999998 79999998643
No 355
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=21.12 E-value=99 Score=36.87 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=31.6
Q ss_pred ceEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCc
Q psy15599 3 TLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISE 40 (2347)
Q Consensus 3 ~~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~ 40 (2347)
.+.++|++.|+ ..+++.++|+|++.|+|..+.++...
T Consensus 31 k~ivkv~~~D~-ss~~l~V~~~~TA~dv~~~L~~k~~~ 67 (281)
T 4gmv_A 31 KLVIRVHMSDD-SSKTMMVDERQTVRQVLDNLMDKSHC 67 (281)
T ss_dssp EEEEEEEETTS-CEEEEEEETTCBHHHHHHHHHHHSCC
T ss_pred cEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 35678888875 89999999999999999998888643
No 356
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.84 E-value=3.5e+02 Score=26.34 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=36.0
Q ss_pred eeEEEEeCCCc-EEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 88 RTLKVRMLDGT-LKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG~-~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
..+.|...+.. ..++.|+.+.||.++-..|..+.||+ ++..-|++.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip-~~~qrL~~~ 54 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP-ASCMELELY 54 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC-TTTCBCEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC-HHHeEEEEe
Confidence 45667765543 68899999999999999999999996 445566665
No 357
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=20.79 E-value=1.3e+02 Score=31.53 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=49.5
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCcc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDE 80 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~ 80 (2347)
..|.|+++++. ...-+|..+.+|.++..+|....+.. ++..|-|.- .+ |.+-.. +.+++|+..++.+...
T Consensus 53 t~IqIRlpdG~-rl~~rF~~~~tl~~v~~fV~~~~~~~---~~~~f~L~t-~f-Prk~l~-d~~~TL~eagL~psav 122 (127)
T 1s3s_G 53 TNIQIRLADGG-RLVQKFNHSHRISDIRLFIVDARPAM---AATSFVLMT-TF-PNKELA-DENQTLKEANLLNAVI 122 (127)
T ss_dssp CCEEEEETTTT-EEEEECCSSCBHHHHHHHHHHHCSGG---GTSCEEEEE-TT-TTEECC-STTCBHHHHTCSSCEE
T ss_pred EEEEEECCCCC-EEEEEeCCCCCHHHHHHHHHHhCcCC---CCCCeEEec-CC-CCCCCC-CCCCcHHHCCCcCceE
Confidence 35788888774 55889999999999999999975532 346676654 22 444322 4588999999876543
No 358
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=20.69 E-value=8.8e+02 Score=26.75 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=55.0
Q ss_pred chhHhhHHHHHHHHHHHHHHHH---HhhcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhh------------cCCCCchh
Q psy15599 991 NLPASSKQYSHSLQNLVDIGME---IISTTESRETQTKMLSSLKSVSTSSSKFLSTARSA------------ALDPSASN 1055 (2347)
Q Consensus 991 ~L~~~sk~~a~~~~~L~~~~~~---~a~~~~d~~~q~~li~~~~~i~~~s~kLl~~aKa~------------~~~p~d~~ 1055 (2347)
++-.++..+-.++..|+.-+++ -|.+.+|+..+..|-.-++.+.+.-.-|+.+..+. ....+.|-
T Consensus 60 ~I~~a~~~v~~Sl~efL~FArga~~nA~~~~d~~L~~kl~rqLq~l~ds~qiL~~~~~~Ld~~~Wsl~~La~~~~~~~~D 139 (176)
T 2l81_A 60 EIRTAVDKVELFLKEYLHFVKGAVANAACLPELILHNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCD 139 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHTTCCSSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHccCCCCCCcc
Confidence 4555555566666666554444 45567787777777666655543333333332221 12233467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy15599 1056 SKSQLSAAARNVADSINNLLNICT 1079 (2347)
Q Consensus 1056 a~~qL~~aAr~l~~sin~Lv~a~~ 1079 (2347)
.-.+|..++|.|.+-+.+|..-..
T Consensus 140 dLDrfVmvaR~vPdD~kqlas~I~ 163 (176)
T 2l81_A 140 DLDRFVMVAKTVPDDAKQLTTTIN 163 (176)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHhhccCCHHHHHHHHHHH
Confidence 789999999999999999988654
No 359
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=20.40 E-value=1.5e+02 Score=30.06 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=52.0
Q ss_pred eEEEEEEecCCeeEEEEecCCCcHHHHHHHHHhhcCcccCCCccccccccccCCCccccccccCCchhhhhccCCccccc
Q psy15599 4 LSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNGDELEY 83 (2347)
Q Consensus 4 ~~L~v~~~~~~~~kt~~f~~~~~v~~~~~~i~e~~~~~~~~~~~dyglf~~~~~~~k~~WL~~~~tL~~y~l~~~~~L~~ 83 (2347)
..|.|+++++. ...-+|..+.+|.++..+|... . ..+..|-|.- .-|.+....+..++|+..++.+...|..
T Consensus 24 ~~IqiRlpdG~-r~~rrF~~~~tl~~v~~fv~~~-~----~~~~~f~L~t--~fPrk~l~~d~~~TL~e~gL~p~a~L~V 95 (109)
T 2cr5_A 24 VTVALRCPNGR-VLRRRFFKSWNSQVLLDWMMKV-G----YHKSLYRLST--SFPRRALEVEGGSSLEDIGITVDTVLNV 95 (109)
T ss_dssp EEEEEECTTSC-EEEEEEESSSBTHHHHHHHHHH-T----CCTTTEEEEC--SSSCCBCCCCSSCBHHHHTCSSCEEEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCCCHHHHHHHHHhc-C----CCCCCeEEEe--CCCCcCCCCCCCCCHHHcCCCCCeEEEE
Confidence 46777777764 4677999999999999999864 1 1346677654 2355554446789999999887766654
Q ss_pred c
Q psy15599 84 R 84 (2347)
Q Consensus 84 ~ 84 (2347)
.
T Consensus 96 e 96 (109)
T 2cr5_A 96 E 96 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 360
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=20.36 E-value=4.3e+02 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=35.3
Q ss_pred eeEEEEeCCC--cEEEEEEcCCCcHHHHHHHHHHHhCCCCCCcceeEEe
Q psy15599 88 RTLKVRMLDG--TLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRE 134 (2347)
Q Consensus 88 r~lkV~L~DG--~~~~v~Vd~sttv~evv~~Ic~~LGL~~~e~FsL~~~ 134 (2347)
.++.|...+. ...++.|+++.|+.++-..|..+.||+.. ..-|++.
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~-~QrLi~~ 62 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVN-SMALELY 62 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTT-SEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHH-HeEEEEe
Confidence 3566665444 47899999999999999999999999753 4455554
No 361
>1syq_B Talin 1; cytoskeleton, vinculin, cell adhesion; 2.42A {Homo sapiens}
Probab=20.31 E-value=96 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q psy15599 745 LMAAVKEVANAVEGLVAMCNET 766 (2347)
Q Consensus 745 Li~Aak~va~at~~Lv~aa~~~ 766 (2347)
|+.++|.++.+++.|+..++++
T Consensus 2 llqaakglagavsellrsaqpa 23 (26)
T 1syq_B 2 LLQAAKGLAGAVSELLRSAQPA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCT
T ss_pred HhHHHhHhHHHHHHHHHhcCcc
Confidence 5678888888888888877765
No 362
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=20.06 E-value=3e+02 Score=27.41 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=33.9
Q ss_pred ccceeEEEEeCCCcEEEE--EEcCCCcHHHHHHHH-HHHhCCCCCCcceeEE
Q psy15599 85 RKMRTLKVRMLDGTLKTL--LVDDSQPVANLMVVI-CTKIGITNHDEYSLVR 133 (2347)
Q Consensus 85 ~~~r~lkV~L~DG~~~~v--~Vd~sttv~evv~~I-c~~LGL~~~e~FsL~~ 133 (2347)
+....|.|..++|...++ .|+++.||.++-..| ...-|++ ++..-|++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip-~~~QrLi~ 67 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH-ISEIKLLL 67 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC-GGGEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC-hhhEEEEE
Confidence 345678899999986666 556999999999999 5444653 34445554
Done!