RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15599
(2347 letters)
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 434 bits (1117), Expect = e-137
Identities = 248/407 (60%), Positives = 303/407 (74%), Gaps = 36/407 (8%)
Query: 1 MATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKK 60
M LSLKI I NV KTMQF+PST VYDACR+IR++I EA G D+GLFLSD D KK
Sbjct: 1 MVALSLKISI--GNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKK 58
Query: 61 GVWLEPGRNLEYYILRNGDELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTK 120
G+WLE G+ L+YY+LRNGD +EYR+K R LK+RMLDGT+KT++VDDS+ V ++++ IC +
Sbjct: 59 GIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR 118
Query: 121 IGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWI 180
IGITNHDEYSLVRE E++ DDE+NW+
Sbjct: 119 IGITNHDEYSLVRELMEEK---------------------------------KDDELNWL 145
Query: 181 DFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDL 240
D +TLREQG++E+E +LLRRKFF+SD N+DS DPVQLNLLYVQARD +L+G+HPV+ D
Sbjct: 146 DHGRTLREQGVEEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDK 205
Query: 241 ACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELD 300
AC+ AG Q IQFG +N KHK FLDLK+FLP+ YVK K E+KIF HKN +SE++
Sbjct: 206 ACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQK-GERKIFQAHKNCGQMSEIE 264
Query: 301 AKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPL 360
AKV Y K RSL TYGV+FFLVKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W L
Sbjct: 265 AKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL 324
Query: 361 TTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIIL 407
T ++RW AS FTLDFGDY D YYSVQTTE EQI QLIAGYIDIIL
Sbjct: 325 TNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIIL 371
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu
cell adhesion, cell projection; 2.00A {Mus musculus} PDB:
1zw3_B
Length = 309
Score = 309 bits (792), Expect = 3e-95
Identities = 155/301 (51%), Positives = 219/301 (72%)
Query: 1083 PGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHS 1142
GQKECDNA+R +++++ L+ P +PINDMSY+ C + +ME SK LGE MTG++ +AK+
Sbjct: 8 HGQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNG 67
Query: 1143 EYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHA 1202
FG + S ++CG E AQA+YLV +S+ S +GL++ TQF+RA AI+ A
Sbjct: 68 NLPEFGDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMA 127
Query: 1203 CNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA 1262
C +L P TQ Q+L+AAT++AKHTS+LCN+CR+AS++T NP AKR FVQSAK+VANSTA
Sbjct: 128 CQSLGEPGCTQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTA 187
Query: 1263 NLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQE 1322
NLV+ IKALD ++ E+N C AT PLL+AVD+L +FA +PEF + + A E
Sbjct: 188 NLVKTIKALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAME 247
Query: 1323 PILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPG 1382
PI+ + + ++ES+ +I+TA++LAV+P+D P W +LA HS+ VSDSIK+L+TS+RD APG
Sbjct: 248 PIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPG 307
Query: 1383 Q 1383
Q
Sbjct: 308 Q 308
Score = 62.2 bits (150), Expect = 6e-10
Identities = 50/279 (17%), Positives = 101/279 (36%), Gaps = 36/279 (12%)
Query: 828 EMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQ---- 883
++ +++LG+A + Q K E A ++A EAA Q
Sbjct: 45 SVMENSKVLGEAMTGISQNAKNGNLPE--------FGDAIATASKALCGFTEAAAQAAYL 96
Query: 884 -CASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEII 942
S P Q+ LV + R + + + + Q + T +
Sbjct: 97 VGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEPGCTQ-------AQVLSAATIVA 149
Query: 943 ESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVK---------NPANLP 993
+ T ++ + +++ +A ++ +T ++ ++K N A
Sbjct: 150 KHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDGDFTEENRAQCR 209
Query: 994 ASSKQYSHSLQNLVD-------IGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARS 1046
A++ ++ NL + + E R ++ S K++ S+ + TAR+
Sbjct: 210 AATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAMEPIVISAKTMLESAGGLIQTARA 269
Query: 1047 AALDPSASNSKSQLSAAARNVADSINNLLNICTSALPGQ 1085
A++P S L+ +R V+DSI L+ PGQ
Sbjct: 270 LAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPGQ 308
Score = 52.5 bits (125), Expect = 7e-07
Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 35/284 (12%)
Query: 617 DELLDAARKLCFAFTDLLKAAQ----PHSNQPRQNLLNAATRVGEASHHVLTEIGESQTN 672
D +++ ++ L A T + + A+ P A EA+ +G S N
Sbjct: 44 DSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALCGFTEAAAQAAYLVGVSDPN 103
Query: 673 EM--------QDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQ 724
+A+ +L P Q V+++AT A TS
Sbjct: 104 SQAGQQGLVEPTQFARANQAIQMACQSLGE---------PGCTQAQVLSAATIVAKHTSA 154
Query: 725 LVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNE--TCTDENLNKDLTKAAAE 782
L ++ + NP ++Q + + KEVAN+ LV E A A
Sbjct: 155 LCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDGDFTEENRAQCRAATAP 214
Query: 783 VTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQ 842
+ + ++ L + E + ++ + ++ + A+ + ++
Sbjct: 215 LLEAVDNLSAF--ASNPEFSSVPAQISPEGRAAMEPIVIS----------AKTMLESAGG 262
Query: 843 LIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCAS 886
LIQ + A N D L ++ ++++ +++ + R A
Sbjct: 263 LIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAP 306
Score = 49.8 bits (118), Expect = 5e-06
Identities = 45/345 (13%), Positives = 100/345 (28%), Gaps = 55/345 (15%)
Query: 930 PGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVK-- 987
GQ+E + +E+ E + P + + + L E + + K
Sbjct: 8 HGQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNG 67
Query: 988 NPANLPASSKQYSHSLQNLVDIG---MEIISTTESRETQTKMLSSLKSVSTSSSKFLSTA 1044
N + S +L + ++ ++ + + +++ + A
Sbjct: 68 NLPEFGDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMA 127
Query: 1045 RSAALDPSASNSKSQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQSMKPFLDK 1104
+ +P + +Q+ +AA VA + L N C A +
Sbjct: 128 CQSLGEPGCTQ--AQVLSAATIVAKHTSALCNSCRLA--------------------SAR 165
Query: 1105 PTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEG 1164
P + + +K + + K + D + + L E
Sbjct: 166 TANPTAKRQFVQS-------AKEVANSTANLVKTIKALDGDFTEENRAQCRAATAPLLEA 218
Query: 1165 VAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIA 1224
V S + E +S A Q S A + I+ +A +
Sbjct: 219 VDNLSAFASNPEFSSVPA--------QISPEGRA-------------AMEPIVISAKTML 257
Query: 1225 KHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIK 1269
+ L R + +P ++ V++S L+ ++
Sbjct: 258 ESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMR 302
Score = 45.6 bits (107), Expect = 1e-04
Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 7/215 (3%)
Query: 2056 RRIAQSLTELVSIAEQLKGSNWMDPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQ 2115
R++ L + + + ++ D + L A I AK + ++
Sbjct: 18 RQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIA 77
Query: 2116 ETDETLNFDEMILEAAKSIAAATSALVKAASASQRELIDAGRMSRRPLTSSDDGQWSEDD 2175
+ L EAA A + A Q+ L++ + +R Q +
Sbjct: 78 TASKALC---GFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEP 134
Query: 2176 GQWSEGLISAARLVAAATHTFVEA---ANSVVQGAGTEEKLISSAKQVASSTAQLLVACK 2232
G ++SAA +VA T + A++ + + + SAK+VA+STA L+ K
Sbjct: 135 GCTQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIK 194
Query: 2233 -VKADPESDATHRLQSAGNAVKRATDNLVRAAQQA 2266
+ D + + ++A + A DNL A
Sbjct: 195 ALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNP 229
Score = 32.9 bits (74), Expect = 1.1
Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 21/219 (9%)
Query: 1746 ALQAGSRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKA 1805
A+ S+ AA+ + ++G D G + FA + I ++
Sbjct: 75 AIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEP----TQFARANQAIQMACQS 130
Query: 1806 LVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVK 1865
L E +Q Q+ AA L + AS + NP A+ + + K
Sbjct: 131 LGE--------PGCTQAQVLSAATIVAKHTSALCNSCR--LASARTANPTAKRQFVQSAK 180
Query: 1866 DVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRA 1925
+V + +L++ KA G + + + ++ V +L E +
Sbjct: 181 EVANSTANLVKTIKALDGDF-TEENRAQCRAATAPLLEAVDNLSAFASNPE----FSSVP 235
Query: 1926 LESTIEAIAQEIRALNSVEQVKSTASPEELVRCTKPITQ 1964
+ + E A + S + + +A L++ + +
Sbjct: 236 AQISPEGRAAMEPIVISAKTMLESAG--GLIQTARALAV 272
Score = 32.9 bits (74), Expect = 1.1
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 29/169 (17%)
Query: 1741 SQVLYALQAGSRGTQACINAASTVSGIIGDLDTT---------IMFATAGTLHAEKE--N 1789
+QVL A ++ T A N+ S + + +TA + K
Sbjct: 139 AQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDG 198
Query: 1790 DTFADHRENILKTAKALVEDTKTLVAGAASS----------------QEQLAVAAQNAVS 1833
D ++R L+E L A A++ E + ++A+ +
Sbjct: 199 DFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAMEPIVISAKTMLE 258
Query: 1834 TIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAAS 1882
+ L + + A ++ +P +L + V+ ++ LI + + +
Sbjct: 259 SAGGLIQTAR--ALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKA 305
Score = 31.7 bits (71), Expect = 2.9
Identities = 28/233 (12%), Positives = 71/233 (30%), Gaps = 11/233 (4%)
Query: 1588 SSSLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVGSSKEIARI 1647
++ + + F ++ ++ + + S V+ + +++ I
Sbjct: 73 GDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPT-----QFARANQAIQMA 127
Query: 1648 SQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTAC 1707
Q + + + +S ++ + S LC C A A +NP + + ++ +
Sbjct: 128 CQSLGEPGCTQAQVLS-AATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANST 186
Query: 1708 INTVTMAATCQTSGDDYTHREFADTNRVLAEKVSQVL-YALQAGSRGTQACI-NAASTVS 1765
N V + + L E V + +A A I
Sbjct: 187 ANLVKTIKALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAM 246
Query: 1766 GIIGDLDTTIMFATAGTLHAEKE---NDTFADHRENILKTAKALVEDTKTLVA 1815
I T++ + G + + N + ++ + + K L+
Sbjct: 247 EPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLIT 299
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site,
IBS2, cell membrane, cell projection, cytoplasm,
cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Length = 332
Score = 295 bits (756), Expect = 5e-90
Identities = 202/324 (62%), Positives = 240/324 (74%), Gaps = 5/324 (1%)
Query: 1753 GTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKT 1812
GTQACI AAS VSGII DLDTTIMFATAGTL+ E +TFADHRE ILKTAK LVEDTK
Sbjct: 13 GTQACITAASAVSGIIADLDTTIMFATAGTLNRE-GAETFADHREGILKTAKVLVEDTKV 71
Query: 1813 LVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALG 1872
LV AA SQE+LA AAQ++V+TI +LA+VVK GAASLG+ +PE QV+LINAVKDV ALG
Sbjct: 72 LVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALG 131
Query: 1873 DLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEA 1932
DLI ATKAA+GK +DP + LK SAKVMVTNVTSLLKTVKAVEDE T+GTRALE+T E
Sbjct: 132 DLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEH 191
Query: 1933 IAQEIRALNSVEQVKSTASPEELVRCTKPITQATAKAVAAGNSCKQEDVIVAANMGRKAI 1992
I QE+ S E T++PE+ +R TK IT ATAKAVAAGNSC+QEDVI AN+ R+AI
Sbjct: 192 IRQELAVFCSPEPPAKTSTPEDFIRMTKGITMATAKAVAAGNSCRQEDVIATANLSRRAI 251
Query: 1993 SDMLAVCKGCSNAAE-THELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQAL 2051
+DML CK + E ++ ++ L G+E A Y ELL VL L +P D KQ L
Sbjct: 252 ADMLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKP---NPDLKQQL 308
Query: 2052 PPISRRIAQSLTELVSIAEQLKGS 2075
S+R+A S+TEL+ AE +KG+
Sbjct: 309 TGHSKRVAGSVTELIQAAEAMKGT 332
Score = 61.0 bits (147), Expect = 2e-09
Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 3/185 (1%)
Query: 1378 DVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILT 1437
D G + C A A+S + +LD M A + G + + + E + A ++
Sbjct: 9 DPFTGTQACITAASAVSGIIADLDTTIMFATA-GTLNREGAETFADHREGILKTAKVLVE 67
Query: 1438 RLEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQ--QMTLLDQTKTVA 1495
+ L Q A E +A + V + LA A++L Q+ L++ K VA
Sbjct: 68 DTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVA 127
Query: 1496 ECLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSLDHFTGVVNTFVDSITK 1555
+ L ++ K A G L S + ++ + ++ ++
Sbjct: 128 KALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEA 187
Query: 1556 SMQQI 1560
+ + I
Sbjct: 188 TTEHI 192
Score = 59.1 bits (142), Expect = 7e-09
Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 29/247 (11%)
Query: 657 EASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSAT 716
A+ L G + ++ +L AK + T LV A Q + +A
Sbjct: 37 FATAGTLNREGAETFADHREGILKTAKVLVEDTKVLVQNAAG--------SQEKLAQAAQ 88
Query: 717 KCALATSQLVACTKVVAPTL--ENPACQQQLMAAVKEVANAVEGLVAMCNET---CTDEN 771
++L K+ A +L E+P Q L+ AVK+VA A+ L++ D+
Sbjct: 89 SSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATKAAAGKVGDDP 148
Query: 772 LNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDV--------ETAVEVMMSSSDRLLAAS 823
L +A + + LL +K E + E+ + S A +
Sbjct: 149 AVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVFCSPEPPAKT 208
Query: 824 GDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQ 883
+ +R + + ATA+ + A S Q ++A A A A M+ A ++
Sbjct: 209 STPEDFIRMTKGITMATAKAVAAGN--------SCRQEDVIATANLSRRAIADMLRACKE 260
Query: 884 CASHPQD 890
A HP+
Sbjct: 261 AAFHPEV 267
Score = 51.0 bits (121), Expect = 2e-06
Identities = 45/316 (14%), Positives = 99/316 (31%), Gaps = 48/316 (15%)
Query: 964 LQQELSSAATGLSETTNEVISSV-KNPANLPASSKQYSHSLQNLVD---IGMEIISTTES 1019
++ + A L E T ++ + + L +++ ++ L D +G + +
Sbjct: 54 HREGILKTAKVLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGAEDP 113
Query: 1020 RETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLN--- 1076
ETQ +++++K V+ + +S ++AA + QL +A+ + ++ +LL
Sbjct: 114 -ETQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVK 172
Query: 1077 -ICTSALPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGM 1135
+ A G + + +I+ P P + + + +K +
Sbjct: 173 AVEDEATKGTRALEATTEHIRQELAVFCSPEPPAKTSTPED----FIRMTKGITMATAKA 228
Query: 1136 ANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRA 1195
+ N +I +
Sbjct: 229 VAAGNSCRQEDVIATANLSRRAIADM---------------------------------- 254
Query: 1196 ANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAK 1255
A K A + + L A L + + K P K+ +K
Sbjct: 255 LRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPN-PDLKQQLTGHSK 313
Query: 1256 DVANSTANLVQEIKAL 1271
VA S L+Q +A+
Sbjct: 314 RVAGSVTELIQAAEAM 329
Score = 49.5 bits (117), Expect = 7e-06
Identities = 50/318 (15%), Positives = 107/318 (33%), Gaps = 52/318 (16%)
Query: 770 ENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVM--MSSSDRLLAASGDAP 827
+ + + K A + + L+ + + + AQ +++V + ++ +L AAS A
Sbjct: 52 ADHREGILKTAKVLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGAE 111
Query: 828 ------EMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAA 881
++ + + +A LI A K A D +L +AK + +++
Sbjct: 112 DPETQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTV 171
Query: 882 RQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEI 941
+ + AL T E +RQ + K+ T E
Sbjct: 172 KAVEDEATKGTR--ALEATTEHIRQELAVFCSPEPPAKTSTPE----------------- 212
Query: 942 IESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSH 1001
DF R TK I + +A + ++ A++
Sbjct: 213 -----------DFIRMTKGITMATAKAVAAGNSCRQ------------EDVIATANLSRR 249
Query: 1002 SLQNLVDIGMEIISTTE-SRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQL 1060
++ +++ E E + + + + L + + + L P+ K QL
Sbjct: 250 AIADMLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPNPD-LKQQL 308
Query: 1061 SAAARNVADSINNLLNIC 1078
+ ++ VA S+ L+
Sbjct: 309 TGHSKRVAGSVTELIQAA 326
Score = 42.2 bits (98), Expect = 0.002
Identities = 53/335 (15%), Positives = 112/335 (33%), Gaps = 51/335 (15%)
Query: 1083 PGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHS 1142
G + C A + + LD + + L E +++ + G+ AK
Sbjct: 12 TGTQACITAASAVSGIIADLD------TTIMFATAGTLNREGAETFADHREGILKTAK-- 63
Query: 1143 EYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHA 1202
+ + L + A + +A + +S L D + A
Sbjct: 64 ----------VLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLG--------A 105
Query: 1203 CNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA 1262
+ TQ ++ A +AK L +A + A+ K + A SAK + +
Sbjct: 106 ASLGAEDPETQVVLINAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVT 165
Query: 1263 NLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGD------- 1315
+L++ +KA+ E T+A + + + ++ SPE ++S D
Sbjct: 166 SLLKTVKAV-----EDEATKGTRALEATTEHIRQELAVFCSPEPPAKTSTPEDFIRMTKG 220
Query: 1316 -----------STLTAQEPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKL-LADHSK 1363
QE +++ + M++ K A P+ P +L + +
Sbjct: 221 ITMATAKAVAAGNSCRQEDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRALHYGR 280
Query: 1364 QVSDSIKRLVTSIRDV-APGQKECDQAIEAISSRL 1397
+ ++ L+ + + Q + S R+
Sbjct: 281 ECANGYLELLDHVLLTLQKPNPDLKQQLTGHSKRV 315
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 259 bits (663), Expect = 3e-79
Identities = 139/206 (67%), Positives = 167/206 (81%), Gaps = 1/206 (0%)
Query: 202 KFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKH 261
KFF+SD N+DS DPVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q IQFG +N KH
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKH 61
Query: 262 KPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFL 321
KP FL+LK+FLP+ Y+K + E+KIF HKN +SE++AKV Y K RSL TYGV+FFL
Sbjct: 62 KPGFLELKDFLPKEYIK-QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFL 120
Query: 322 VKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS 381
VKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS FTLDFGDY
Sbjct: 121 VKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQ 180
Query: 382 DNYYSVQTTEAEQIQQLIAGYIDIIL 407
D YYSVQTTE EQI QLIAGYIDIIL
Sbjct: 181 DGYYSVQTTEGEQIAQLIAGYIDIIL 206
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 257 bits (659), Expect = 2e-78
Identities = 140/222 (63%), Positives = 165/222 (74%), Gaps = 6/222 (2%)
Query: 191 IDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTH 250
+ +F S S DPVQLNLLYVQARD +L+G+HPV+ D AC+ AG Q
Sbjct: 7 HSSGVDLGTENLYFQS-----SRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQ 61
Query: 251 IQFGDYNPSKHKPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCR 310
IQFG +N KHK FLDLK+FLP+ YVK K E+KIF HKN +SE++AKV Y K R
Sbjct: 62 IQFGPHNEQKHKAGFLDLKDFLPKEYVKQK-GERKIFQAHKNCGQMSEIEAKVRYVKLAR 120
Query: 311 SLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS 370
SL TYGV+FFLVKEKMKGKNKLVPRLLG+TK+ V+R+DE+TKE+++ W LT ++RW AS
Sbjct: 121 SLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASP 180
Query: 371 NVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMS 412
FTLDFGDY D YYSVQTTE EQI QLIAGYIDIILKKK S
Sbjct: 181 KSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKKKS 222
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 254 bits (651), Expect = 6e-76
Identities = 55/342 (16%), Positives = 121/342 (35%), Gaps = 41/342 (11%)
Query: 85 RKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKP 144
+ +++ +DG+ +++ + ++ ++ +++ + ++ KP
Sbjct: 3 PEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKP 62
Query: 145 NFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLL--RRK 202
L +W + L P L R
Sbjct: 63 YHKPL------------------------QHVRDWPEILAELTNLDPQRETPQLFLRRDV 98
Query: 203 FFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHK 262
+ DP+ + +L+ +AR +L G + LA + I +G+Y KHK
Sbjct: 99 RLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHK 158
Query: 263 PPFL---DLKEFLPQSYVKVKG--IEKKIFSEHKNHVGLSELDAKV-----LYTKTCRSL 312
FL +LK +P + +K K +I E+KN + ++ ++ + C +
Sbjct: 159 QGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEI 218
Query: 313 PTYGVTFF---LVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGAS 369
PTYG FF + + +K++P +GV + L+ TK ++ + W
Sbjct: 219 PTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCF-MWQLG 277
Query: 370 SNVFTLDFGDYSDNY-YSVQTTEAEQIQQLIAGYIDIILKKK 410
+ + V T +A + +L+ ++ +
Sbjct: 278 DTDTCFQIHSMENKMSFIVHTKQAGLVVKLLMKLNGQLMPTE 319
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1
a.216.1.1
Length = 308
Score = 235 bits (599), Expect = 3e-69
Identities = 145/302 (48%), Positives = 193/302 (63%), Gaps = 8/302 (2%)
Query: 505 LTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQI 564
LT +Q+AL TI + + + L +P LG DAAS W++ +D +KH + SQ+
Sbjct: 7 LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQV 66
Query: 565 AAMNAATAQVVTMTSG--EVTDYSGVESAITSISHTLPEMSKGVRMLAALTP----SGDE 618
A+ A TA VV +T+G TDY+ V A+T+IS L EMS+GV++LAAL +G
Sbjct: 67 DAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRP 126
Query: 619 LLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTN-EMQDT 677
LL AA+ L A ++LL++AQP S +PRQNLL AA VG+AS +L +IGES T+ QD
Sbjct: 127 LLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDV 186
Query: 678 LLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCALATSQLVACTKVVAPTL 736
L+ LA AVA+ AALVLKAKSVA QT VI +AT+CAL+TSQLVACTKVVAPT+
Sbjct: 187 LMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTI 246
Query: 737 ENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKV 796
+P CQ+QL+ A + VA AVEG V+ D L + + AA VT+ LN+LL H+K
Sbjct: 247 SSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVKA 306
Query: 797 TT 798
Sbjct: 307 HA 308
Score = 73.0 bits (178), Expect = 1e-13
Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 30/180 (16%)
Query: 2090 ELLGAAASIDAAAKKLSSLRPRRSLQETDETLNFDEMILEAAKSIAAATSALVKAASASQ 2149
LL AA ++ A+ +L + E+D +F +++++ A ++A+A +ALV A +
Sbjct: 155 NLLQAAGNVGQASGELLQQ-----IGESDTDPHFQDVLMQLANAVASAAAALVLKAKSVA 209
Query: 2150 RELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSV---VQG 2206
+ +D +I+AA A +T V V +
Sbjct: 210 QRT---------------------EDSGLQTQVIAAATQCALSTSQLVACTKVVAPTISS 248
Query: 2207 AGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRATDNLVRAAQQA 2266
+E+L+ + + VA + + A + A + + +A AV +A + L++ +
Sbjct: 249 PVCQEQLVEAGRLVAKAVEGCVSASQ-AATEDGQLLRGVGAAATAVTQALNELLQHVKAH 307
Score = 50.3 bits (119), Expect = 4e-06
Identities = 53/270 (19%), Positives = 105/270 (38%), Gaps = 18/270 (6%)
Query: 647 NLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPN 706
L + T +++ +E + + S A+ TA++V A
Sbjct: 31 TLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQVDAITAGTASVVNLT---AGDPAET 87
Query: 707 QQTSVITSATKCALATSQLVACTKVVAPTLEN-PACQQQLMAAVKEVANAVEGLVAMCNE 765
T+V + T + +++ K++A LE+ + L+ A K +A AV L+
Sbjct: 88 DYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQP 147
Query: 766 TCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEP---------AQDVETAVEVMMSSS 816
++L +AA V + +LL I + T+P A V +A ++ +
Sbjct: 148 A--SAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALVLKA 205
Query: 817 DRLLAASGDAP---EMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEA 873
+ + D+ +++ A +T+QL+ K A Q +L+ A + +A+A
Sbjct: 206 KSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKA 265
Query: 874 TARMVEAARQCASHPQDIMKQEALVTTVEE 903
V A++ Q + A T V +
Sbjct: 266 VEGCVSASQAATEDGQLLRGVGAAATAVTQ 295
Score = 49.2 bits (116), Expect = 8e-06
Identities = 49/289 (16%), Positives = 101/289 (34%), Gaps = 39/289 (13%)
Query: 705 PNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCN 764
+ + + T+ +V T + A + + G+ +
Sbjct: 56 DESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAA 115
Query: 765 ETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASG 824
+ + L +AA + +++LL + + EP Q++ A
Sbjct: 116 LLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQA---------------- 159
Query: 825 DAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQC 884
A +GQA+ +L+Q I E++ D Q L+ A +A A A +V A+
Sbjct: 160 --------AGNVGQASGELLQQI---GESDTDPHFQDVLMQLANAVASAAAALVLKAKSV 208
Query: 885 ASHPQDIMKQEALVTTVEELRQAAT---PTLRYKLFNKSQTNEFEGLLPGQQEIEEITEI 941
A +D Q ++ + + + + S E L+ + + + E
Sbjct: 209 AQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEG 268
Query: 942 IESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPA 990
S + D +L + + +AAT +++ NE++ VK A
Sbjct: 269 CVSASQAATEDG---------QLLRGVGAAATAVTQALNELLQHVKAHA 308
Score = 46.9 bits (110), Expect = 5e-05
Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 15/249 (6%)
Query: 832 QARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDI 891
Q + TA ++ GD + + + + NL E + + A A +
Sbjct: 65 QVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLA---ALLEDEG 121
Query: 892 MKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHT 951
L+ + L A + +L +Q E Q + + +QI
Sbjct: 122 GNGRPLLQAAKGLAGAVS-----ELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGE 176
Query: 952 DDF-PRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPA---NLPASSKQYSHSLQNLV 1007
D P + +L ++SAA L V ++ + A++ Q + S LV
Sbjct: 177 SDTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLV 236
Query: 1008 DIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNV 1067
+ T S Q +++ + + V+ + +S +++A D + AAA V
Sbjct: 237 ACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLR---GVGAAATAV 293
Query: 1068 ADSINNLLN 1076
++N LL
Sbjct: 294 TQALNELLQ 302
Score = 46.5 bits (109), Expect = 6e-05
Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 30/182 (16%)
Query: 2087 AETELLGAAASIDAAAKKLSSL--RPRRSLQETDETLNFDEMILEAAKSIAAATSALVKA 2144
AET+ ++ + L+ + + ++ +L+AAK +A A S L+++
Sbjct: 85 AETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRS 144
Query: 2145 ASASQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVV 2204
A + E L+ AA V A+ ++
Sbjct: 145 AQPASAEPRQN--------------------------LLQAAGNVGQASGELLQQIGESD 178
Query: 2205 QGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHR--LQSAGNAVKRATDNLVRA 2262
++ L+ A VAS+ A L++ K A D+ + + +A +T LV
Sbjct: 179 TDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVAC 238
Query: 2263 AQ 2264
+
Sbjct: 239 TK 240
Score = 41.1 bits (95), Expect = 0.004
Identities = 49/324 (15%), Positives = 115/324 (35%), Gaps = 23/324 (7%)
Query: 1059 QLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECH 1118
L++A + + +IN+ + +A + + Q + D S +E H
Sbjct: 6 PLTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQD--AASKAWRKNKMDESKHEIH 63
Query: 1119 NLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEAT 1178
+ + + + A ++Y A G V +S ++ + GV + L+
Sbjct: 64 SQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGN 123
Query: 1179 SNTANKGLIDQTQFSRAANAIKHACNTLTNPST-TQQQILTAATVIAKHTSSLCNACRIA 1237
L+ + A A+ + S +Q +L AA + + + L +
Sbjct: 124 GRP----LLQAAK--GLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGES 177
Query: 1238 SSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNE-KNHQVCTQATKPLLDAVDS 1296
T+P + +Q A VA++ A LV + K++ + A +
Sbjct: 178 D---TDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQ 234
Query: 1297 LVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWK 1356
LV+ + S+ QE ++ AG + ++ + +++ + +
Sbjct: 235 LVACT-------KVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLL---R 284
Query: 1357 LLADHSKQVSDSIKRLVTSIRDVA 1380
+ + V+ ++ L+ ++ A
Sbjct: 285 GVGAAATAVTQALNELLQHVKAHA 308
Score = 39.2 bits (90), Expect = 0.013
Identities = 58/333 (17%), Positives = 117/333 (35%), Gaps = 40/333 (12%)
Query: 944 STYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSL 1003
++ +Q T S + + Q L T L + S + S + +
Sbjct: 8 TSAQQALTGTINSSMQAVQAAQATLDDFET-LPPLGQDAASKAWRKNKMDESKHEIHSQV 66
Query: 1004 QNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARS----AALDPSASNSKSQ 1059
+ +++ T +T + +V+T SS +R AAL +
Sbjct: 67 DAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRP 126
Query: 1060 LSAAARNVADSINNLLNICT--SALPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYEC 1117
L AA+ +A +++ LL SA P Q A Q+ L + E D +
Sbjct: 127 LLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHF--- 183
Query: 1118 HNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEA 1177
+++M+ + ++ + AK S+ E + ++A +
Sbjct: 184 QDVLMQLANAVASAAAALVLKAK----------------SVAQRTEDSGLQTQVIAAATQ 227
Query: 1178 TSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIA 1237
+ + S+ K T+++P Q+Q++ A ++AK +A + A
Sbjct: 228 CALST----------SQLVACTKVVAPTISSPV-CQEQLVEAGRLVAKAVEGCVSASQAA 276
Query: 1238 SSKTTNPVAKRHFVQSAKDVANSTANLVQEIKA 1270
+ + R +A V + L+Q +KA
Sbjct: 277 TE---DGQLLRGVGAAATAVTQALNELLQHVKA 306
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 231 bits (591), Expect = 5e-68
Identities = 63/340 (18%), Positives = 130/340 (38%), Gaps = 55/340 (16%)
Query: 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENK 143
+ K T+++ +D + + +L ++C +G+ + L
Sbjct: 19 QPKTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGL------------ 65
Query: 144 PNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLL--RR 201
+ D V W+ K + + + + EPV
Sbjct: 66 --------------------------QYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99
Query: 202 KFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKH 261
KF+ + + + +L ++Q + +LD + + LA ++GDY+PS H
Sbjct: 100 KFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVH 159
Query: 262 KPPFLDLKEFLPQSYVKVKG-----IEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYG 316
K FL +E LP+ + + E++I + + H G + +A++ Y K + L YG
Sbjct: 160 KRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYG 219
Query: 317 VTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEI-MKTWPLTTVRRWGASSNVFTL 375
V +F ++ K LLGV + D + ++P +R S FT+
Sbjct: 220 VNYFAIRNKKG-----TELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTI 274
Query: 376 DFGDYSDNYYSVQTTE---AEQIQQLIAGYIDIILKKKMS 412
D + + +++ + I QL G D+ ++++ +
Sbjct: 275 KPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKA 314
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila
melanogaster}
Length = 199
Score = 213 bits (542), Expect = 3e-63
Identities = 148/192 (77%), Positives = 168/192 (87%), Gaps = 1/192 (0%)
Query: 1751 SRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDT 1810
SRGTQACINAA TVSGIIGDLDTTIMFATAGTLH++ + +FADHRE+IL+TAKALVEDT
Sbjct: 2 SRGTQACINAAHTVSGIIGDLDTTIMFATAGTLHSDGD-GSFADHREHILQTAKALVEDT 60
Query: 1811 KTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTA 1870
K LV GAA +Q+QLA AAQNAVSTI QLAE VK GA SLGS P++QV++INAVKDV +A
Sbjct: 61 KVLVTGAAGTQDQLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVASA 120
Query: 1871 LGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTI 1930
LGDLI TK ASGK+INDP M LKESA+VMV NV+SLLKTVKAVEDEHTRGTRA+E+T+
Sbjct: 121 LGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLLKTVKAVEDEHTRGTRAMEATV 180
Query: 1931 EAIAQEIRALNS 1942
EAI+QEIRAL
Sbjct: 181 EAISQEIRALEH 192
Score = 80.6 bits (198), Expect = 6e-17
Identities = 31/193 (16%), Positives = 77/193 (39%), Gaps = 10/193 (5%)
Query: 1213 QQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALD 1272
Q + AA ++ L A++ T + F + + + LV++ K L
Sbjct: 5 TQACINAAHTVSGIIGDLDTTIMFATAGTLHSDGDGSFADHREHILQTAKALVEDTKVLV 64
Query: 1273 MNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAII 1332
Q+ A AV ++ A + + + G + +Q +++A + +
Sbjct: 65 TGAAGTQDQLANAAQN----AVSTITQLAEAVKRG--ACSLGSTQPDSQVMVINAVKDVA 118
Query: 1333 ESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIR----DVAPGQKECDQ 1388
+ +I K + + P+ + L + ++ + ++ L+ +++ + G + +
Sbjct: 119 SALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLLKTVKAVEDEHTRGTRAMEA 178
Query: 1389 AIEAISSRLRELD 1401
+EAIS +R L+
Sbjct: 179 TVEAISQEIRALE 191
Score = 61.4 bits (148), Expect = 2e-10
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 3/163 (1%)
Query: 1379 VAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTR 1438
++ G + C A +S + +LD M A + G + S E Q A ++
Sbjct: 1 MSRGTQACINAAHTVSGIIGDLDTTIMFATA-GTLHSDGDGSFADHREHILQTAKALVED 59
Query: 1439 LEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHS--KQQMTLLDQTKTVAE 1496
+ L A + +A + V++ LA A +L + Q+ +++ K VA
Sbjct: 60 TKVLVTGAAGTQDQLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVAS 119
Query: 1497 CLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSL 1539
L +++ K A G DL ES +S + ++
Sbjct: 120 ALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLLKTV 162
Score = 55.6 bits (133), Expect = 3e-08
Identities = 19/149 (12%), Positives = 57/149 (38%), Gaps = 7/149 (4%)
Query: 964 LQQELSSAATGLSETTNEVISSVKNP-ANLPASSKQYSHSLQNLVDIGMEIIS--TTESR 1020
++ + A L E T +++ L +++ ++ L + +
Sbjct: 45 HREHILQTAKALVEDTKVLVTGAAGTQDQLANAAQNAVSTITQLAEAVKRGACSLGSTQP 104
Query: 1021 ETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLN---- 1076
++Q +++++K V+++ ++ + A+ S L +AR + ++++LL
Sbjct: 105 DSQVMVINAVKDVASALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVSSLLKTVKA 164
Query: 1077 ICTSALPGQKECDNAIRNIQSMKPFLDKP 1105
+ G + + + I L+
Sbjct: 165 VEDEHTRGTRAMEATVEAISQEIRALEHH 193
Score = 33.2 bits (75), Expect = 0.62
Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 26/191 (13%)
Query: 1083 PGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHS 1142
G + C NA + + LD + + L + S + + AK
Sbjct: 3 RGTQACINAAHTVSGIIGDLD------TTIMFATAGTLHSDGDGSFADHREHILQTAK-- 54
Query: 1143 EYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHA 1202
+ + L G A +A + + + L + + A
Sbjct: 55 ----------ALVEDTKVLVTGAAGTQDQLANAAQNAVSTITQLAEAVKRG--------A 96
Query: 1203 CNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTA 1262
C+ + +Q ++ A +A L N ++AS K+ N + + +SA+ + + +
Sbjct: 97 CSLGSTQPDSQVMVINAVKDVASALGDLINCTKLASGKSINDPSMQDLKESARVMVLNVS 156
Query: 1263 NLVQEIKALDM 1273
+L++ +KA++
Sbjct: 157 SLLKTVKAVED 167
Score = 29.8 bits (66), Expect = 8.7
Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 25/167 (14%)
Query: 742 QQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEP 801
++ ++ K + + LV T L AA T+ QL +K
Sbjct: 46 REHILQTAKALVEDTKVLVTGAAGT------QDQLANAAQNAVSTITQLAEAVKRGACSL 99
Query: 802 AQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQR 861
+ +++++ + + A LI K + + +
Sbjct: 100 GSTQPDSQVMVINA-----------------VKDVASALGDLINCTKLASGKSINDPSMQ 142
Query: 862 RLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAA 908
L +A+ + + +++ + + A+ TVE + Q
Sbjct: 143 DLKESARVMVLNVSSLLKTVKAVEDEHTRGTR--AMEATVEAISQEI 187
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 215 bits (550), Expect = 8e-63
Identities = 59/332 (17%), Positives = 125/332 (37%), Gaps = 52/332 (15%)
Query: 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGT 148
+++V +D L + + L + IG+ + L ++ +
Sbjct: 3 SVRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFS-------- 53
Query: 149 LTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVL--LRRKFFFS 206
W+ +K + Q + + P+L R KF+
Sbjct: 54 -----------------------------TWLKLNKKVTAQDVRKESPLLFKFRAKFYPE 84
Query: 207 DGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFL 266
D + + + L ++Q ++ +L+ + A LA ++GD+N HK +L
Sbjct: 85 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYL 144
Query: 267 DLKEFLPQSYVKVKGI-----EKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFL 321
+ LPQ ++ + E++I H+ H G+ DA + Y K + L YGV +F
Sbjct: 145 AGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFS 204
Query: 322 VKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS 381
+K K + L LG+ + ++R +P + +R + F + D
Sbjct: 205 IKNKKGSELWLGVDALGLN---IYEQNDRLTPK-IGFPWSEIRNISFNDKKFVIKPIDKK 260
Query: 382 DN---YYSVQTTEAEQIQQLIAGYIDIILKKK 410
+Y+ + ++I L G ++ ++++
Sbjct: 261 APDFVFYAPRLRINKRILALCMGNHELYMRRR 292
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 205 bits (522), Expect = 5e-59
Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 48/305 (15%)
Query: 82 EYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVE 141
E KV +LD T+ +V+ +L+ +C + + D + L +
Sbjct: 12 ENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDN----- 66
Query: 142 NKPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRR 201
W+D +K +++Q
Sbjct: 67 --------------------------------ATSKTWLDSAKEIKKQVRGVPWNFTFNV 94
Query: 202 KFFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKH 261
KF+ D + + L +Q R ++ G P + L + GDY+P H
Sbjct: 95 KFYPPDPA-QLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELH 153
Query: 262 KPPFLDLKEFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFL 321
++ + P K +E+K+ HK++ ++ A + + + + L YGV
Sbjct: 154 GVDYVSDFKLAPNQT---KELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHK 210
Query: 322 VKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYS 381
K+ V +LGV +L ++ + WP V + + F +
Sbjct: 211 AKDLEG-----VDIILGVCSSGLLVYKDKLRINRFPWP--KVLKISYKRSSFFIKIRPGE 263
Query: 382 DNYYS 386
Y
Sbjct: 264 QEQYE 268
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection,
cytoplasm, cytoskeleton, membrane, phosphoprotein,
structural protein; NMR {Mus musculus}
Length = 128
Score = 192 bits (488), Expect = 5e-57
Identities = 69/131 (52%), Positives = 98/131 (74%), Gaps = 4/131 (3%)
Query: 77 NGDELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENP 136
+ + MR LK+RMLDGT+KT++VDDS+ V ++++ IC +IGITNHDEYSLVRE
Sbjct: 1 SSGLVPRGSHMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELM 60
Query: 137 EDEVENKPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEP 196
E++ + GT TL++ K + KME+L++KL TDDE+NW+D +TLREQG++E+E
Sbjct: 61 EEKKDE----GTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTLREQGVEEHET 116
Query: 197 VLLRRKFFFSD 207
+LLRRKFF+SD
Sbjct: 117 LLLRRKFFYSD 127
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 206 bits (524), Expect = 2e-56
Identities = 56/365 (15%), Positives = 119/365 (32%), Gaps = 64/365 (17%)
Query: 83 YRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVEN 142
R+ T V G + ++ ++ + + + +
Sbjct: 212 IHRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFA----------- 260
Query: 143 KPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRK 202
L ++ ++ D + F K + + +
Sbjct: 261 --------LFEYNGHVDKAIESRT-----VVADVLAK--FEKLAATSEVGDLPWKFYFKL 305
Query: 203 FFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHK 262
+ F D + D V+ ++ QA +AV+ G HP ++ LA ++ GDY
Sbjct: 306 YCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAI 365
Query: 263 PPF--------------------------LDLKEFLPQSYV------KVKGIEKKIFSEH 290
PP + ++ + + +V I +
Sbjct: 366 PPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKW 425
Query: 291 KNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDER 350
+ G+++ A Y + P YG T F V+ K G + + LGV+ D+V
Sbjct: 426 RKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQEL--WLGVSADAVSVYKRG 483
Query: 351 TKEIMKTWPLTTVRRWGAS-SNVFTLDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKK 409
++ + + +GA +N + + + +T+E + +L+ YI +I+KK
Sbjct: 484 EGRPLEVFQYEHILSFGAPLANTYKIVVD---ERELLFETSEVVDVAKLMKAYISMIVKK 540
Query: 410 KMSKD 414
+ S
Sbjct: 541 RYSTT 545
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain,
cytoskeleton, phosphorylation, structural protein, actin-
binding protein; NMR {Mus musculus}
Length = 189
Score = 191 bits (486), Expect = 1e-55
Identities = 129/193 (66%), Positives = 155/193 (80%), Gaps = 7/193 (3%)
Query: 2079 DPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDETLNFDEMILEAAKSIAAAT 2138
DPTVIAE ELLGAAA+I+AAAKKL L+PR +E DE+LNF+E ILEAAKSIAAAT
Sbjct: 4 PFTDPTVIAENELLGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAAAT 63
Query: 2139 SALVKAASASQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVE 2198
SALVKAASA+QREL+ G++ P + DDGQWS+GLISAAR+VAAAT+ E
Sbjct: 64 SALVKAASAAQRELVAQGKVGAIP-------ANALDDGQWSQGLISAARMVAAATNNLCE 116
Query: 2199 AANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRATDN 2258
AAN+ VQG ++EKLISSAKQVA+STAQLLVACKVKAD +S+A RLQ+AGNAVKRA+DN
Sbjct: 117 AANAAVQGHASQEKLISSAKQVAASTAQLLVACKVKADQDSEAMKRLQAAGNAVKRASDN 176
Query: 2259 LVRAAQQAIQQDE 2271
LV+AAQ+A ++
Sbjct: 177 LVKAAQKAAAFED 189
Score = 59.3 bits (143), Expect = 1e-09
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 586 SGVESAITSISHTLPEMSKGVRMLAALTPSG--DELLDAARKLCFAFTDLLKAAQPHSNQ 643
G +AI + + L ++ + A +++L+AA+ + A + L+KAA
Sbjct: 17 LGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAAATSALVKAASA---- 72
Query: 644 PRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTL 703
Q L A +VG + + L+S A+ VA T L A +
Sbjct: 73 -AQRELVAQGKVGAIPANA------LDDGQWSQGLISAARMVAAATNNLCEAANAAVQ-- 123
Query: 704 PPNQQTSVITSATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMC 763
Q +I+SA + A +T+QL+ KV A + ++L AA V A + LV
Sbjct: 124 GHASQEKLISSAKQVAASTAQLLVACKVKADQ--DSEAMKRLQAAGNAVKRASDNLVKAA 181
Query: 764 NETCTDEN 771
+ E+
Sbjct: 182 QKAAAFED 189
Score = 48.5 bits (115), Expect = 5e-06
Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 665 EIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQ 724
+ NE+ ++ A L +AK + N + ++ +A A ATS
Sbjct: 7 DPTVIAENELLGAAAAIEAAAKKL-EQLKPRAKPKEADESLNFEEQILEAAKSIAAATSA 65
Query: 725 LVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVT 784
LV A Q++L+A K A D ++ L AA
Sbjct: 66 LVKAAS---------AAQRELVAQGKVGAIP--------ANALDDGQWSQGLISAA---- 104
Query: 785 KTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLI 844
+ V A + +++ + +++ A+ + +TAQL+
Sbjct: 105 ------------------RMVAAATNNLCEAANAAVQGHASQEKLISSAKQVAASTAQLL 146
Query: 845 QAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCAS 886
A K A+ DSE +RL AA + A+ +V+AA++ A+
Sbjct: 147 VACKVKAD--QDSEAMKRLQAAGNAVKRASDNLVKAAQKAAA 186
Score = 35.0 bits (80), Expect = 0.16
Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 22/193 (11%)
Query: 1821 QEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKA 1880
+ +L AA + +L ++ + + ++ A K + A L++A A
Sbjct: 13 ENELLGAAAAIEAAAKKLEQLKPRAKPKEADESLNFEEQILEAAKSIAAATSALVKAASA 72
Query: 1881 ASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAIAQEIRAL 1940
A + + + + +A L+ + V A A
Sbjct: 73 AQRELVAQGKVGAIPANALDDGQWSQGLISAARMVA--------------AATNNLCEAA 118
Query: 1941 NSVEQVKSTASPEELVRCTKPITQATAKAVAA------GNSCKQEDVIVAANMGRKAISD 1994
N+ V+ AS E+L+ K + +TA+ + A +S + + A N ++A +
Sbjct: 119 NAA--VQGHASQEKLISSAKQVAASTAQLLVACKVKADQDSEAMKRLQAAGNAVKRASDN 176
Query: 1995 MLAVCKGCSNAAE 2007
++ + + +
Sbjct: 177 LVKAAQKAAAFED 189
Score = 33.5 bits (76), Expect = 0.45
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1184 KGLIDQTQF-SRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTT 1242
+GLI + + A N + A N +Q++++++A +A T+ L AC++ + +
Sbjct: 98 QGLISAARMVAAATNNLCEAANAAVQGHASQEKLISSAKQVAASTAQLLVACKVKADQ-- 155
Query: 1243 NPVAKRHFVQSAKDVANSTANLVQEIKA 1270
+ A + + V ++ NLV+ +
Sbjct: 156 DSEAMKRLQAAGNAVKRASDNLVKAAQK 183
Score = 32.3 bits (73), Expect = 1.0
Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 18/169 (10%)
Query: 1786 EKENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFG 1845
KE D + E IL+ AK++ T LV A+++Q +L +
Sbjct: 39 PKEADESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGKVGAIP----------- 87
Query: 1846 AASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNV 1905
+ ++ + LI+A + V A +L + AA+ L SAK + +
Sbjct: 88 --ANALDDGQWSQGLISAARMVAAATNNLCE---AANAAVQGHASQEKLISSAKQVAAST 142
Query: 1906 TSLLKTVKAVEDEHTRGTRALESTIEAIAQEIRALNSVEQVKSTASPEE 1954
LL K D+ + + L++ A+ + L V+ + A+ E+
Sbjct: 143 AQLLVACKVKADQDSEAMKRLQAAGNAVKRASDNL--VKAAQKAAAFED 189
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis,
actin-binding, structural genomics, PSI, protein
structure initiative; 1.90A {Homo sapiens} SCOP:
a.216.1.1
Length = 206
Score = 187 bits (476), Expect = 5e-54
Identities = 55/201 (27%), Positives = 104/201 (51%), Gaps = 6/201 (2%)
Query: 2073 KGSNWMDPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDETLNFDEMILEAAK 2132
+ S + ++ + + E+ +A+I+ A +++ + + + L +E IL +
Sbjct: 4 EFSLDVRQEELGAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILNSCT 63
Query: 2133 SIAAATSALVKAASASQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAA 2192
+ A LV +++ Q+E++++GR ++ ++ + +W+EGLISA++ V
Sbjct: 64 DLMKAIRLLVTTSTSLQKEIVESGR------GAATQQEFYAKNSRWTEGLISASKAVGWG 117
Query: 2193 THTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAV 2252
VEAA+ VV G E+LI + ++A+STAQL+ A KVKA+ S RLQ V
Sbjct: 118 ATQLVEAADKVVLHTGKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTV 177
Query: 2253 KRATDNLVRAAQQAIQQDEER 2273
N+V + + +Q E+R
Sbjct: 178 NERAANVVASTKSGQEQIEDR 198
Score = 62.4 bits (151), Expect = 1e-10
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 617 DELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTNEMQD 676
+ +L++ L A L+ + + ++ AAT+ ++ + +
Sbjct: 56 ERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRGAATQQEFY----------AKNSRWTE 105
Query: 677 TLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTL 736
L+S +KAV LV A V + +I + + A +T+QLVA +KV A
Sbjct: 106 GLISASKAVGWGATQLVEAADKVVL--HTGKYEELIVCSHEIAASTAQLVAASKVKANK- 162
Query: 737 ENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDL 776
+ +L + V +VA +
Sbjct: 163 -HSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTM 201
Score = 51.2 bits (122), Expect = 7e-07
Identities = 36/226 (15%), Positives = 80/226 (35%), Gaps = 41/226 (18%)
Query: 665 EIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQ 724
E+G EM T ++ A ++ +A+ +S + ++ S T A
Sbjct: 13 ELGAVVDKEMAATSAAIEDA-VRRIEDMMNQARHASSGVKLEVNERILNSCTDLMKAIRL 71
Query: 725 LVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVT 784
LV + + Q++++ + + A E + + L A+
Sbjct: 72 LVTTST---------SLQKEIVESGRGAATQQEF-------YAKNSRWTEGLISAS---- 111
Query: 785 KTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLI 844
+ V ++ ++D+++ +G E++ + + +TAQL+
Sbjct: 112 ------------------KAVGWGATQLVEAADKVVLHTGKYEELIVCSHEIAASTAQLV 153
Query: 845 QAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQD 890
A K A S RL ++ + E A +V + + +D
Sbjct: 154 AASKVKAN--KHSPHLSRLQECSRTVNERAANVVASTKSGQEQIED 197
Score = 35.1 bits (80), Expect = 0.15
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 1797 ENILKTAKALVEDTKTLVAGA------ASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLG 1850
E ++ +KA+ LV A E+L V + ++ QL K A
Sbjct: 105 EGLISASKAVGWGATQLVEAADKVVLHTGKYEELIVCSHEIAASTAQLVAASKVKA---- 160
Query: 1851 SNNPEAQVLLINAVKDVTTALGDLIQATKAAS 1882
+ + L + V +++ +TK+
Sbjct: 161 NKHSPHLSRLQECSRTVNERAANVVASTKSGQ 192
Score = 34.3 bits (78), Expect = 0.34
Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 25/195 (12%)
Query: 1821 QEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKA 1880
+++A + + ++ +++ + E ++N+ D+ A+ L+ + +
Sbjct: 19 DKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTSTS 78
Query: 1881 ASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAIAQEIRAL 1940
+ ES + T + +++R T L S +A+ L
Sbjct: 79 LQ---------KEIVESGRGAATQ--------QEFYAKNSRWTEGLISASKAVGWGATQL 121
Query: 1941 NSVEQ--VKSTASPEELVRCTKPITQATAKAVAAG------NSCKQEDVIVAANMGRKAI 1992
V T EEL+ C+ I +TA+ VAA +S + + +
Sbjct: 122 VEAADKVVLHTGKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERA 181
Query: 1993 SDMLAVCKGCSNAAE 2007
++++A K E
Sbjct: 182 ANVVASTKSGQEQIE 196
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 198 bits (505), Expect = 8e-54
Identities = 98/606 (16%), Positives = 192/606 (31%), Gaps = 63/606 (10%)
Query: 86 KMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPN 145
K ++V +D L + + L + IG+ + L +
Sbjct: 3 KSMNVRVTTMDAEL-EFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDS--------- 52
Query: 146 FGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLL--RRKF 203
++ WI K + +Q + + P+ R KF
Sbjct: 53 ----------------------------KGDLTWIKLYKKVMQQDVKKENPLQFKFRAKF 84
Query: 204 FFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKP 263
+ D + + L L Y+Q ++A+L + + LA + GD+NP+ H P
Sbjct: 85 YPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGP 144
Query: 264 PFLDLKEFLPQSYVK-----VKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVT 318
FL LPQ + E+ I + + H G+ DA + Y K + L YGV
Sbjct: 145 GFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVN 204
Query: 319 FFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFG 378
+F ++ K + L LG+ ++ D++ +P + +R + F +
Sbjct: 205 YFEIRNKKNTELWLGVDALGL---NIYEKDDKLTPK-IGFPWSEIRNISFNDRKFIIKPI 260
Query: 379 DY---SDNYYSVQTTEAEQIQQLIAGYIDIILKKKMSKDHFGIEGDEGSTMVEDSVSPLK 435
D +++ + ++I L G ++ + ++ D ++ + E +
Sbjct: 261 DKKAPDFVFFAPRVRVNKRILALCMGNHELYM-RRRKPDTIDVQQMKAQAREEKLAKQAQ 319
Query: 436 ATIFQHESNRVGKVNTESVAKPAVMRAGNDGARPYGVGHVGSAQYTTVSGQINIAHSPTT 495
Q E + + +R + + + +
Sbjct: 320 REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379
Query: 496 TQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKET---- 551
+ Q N L + L T +E E+ +K LK ET
Sbjct: 380 EELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQ 439
Query: 552 --TVDANKHNVSSQIAAMNAATAQVVTMTSGEVTDYSGVESAITSISHTLPEMSKG---- 605
DA + + A + A T Q + TD ++ ++++G
Sbjct: 440 EEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDL 499
Query: 606 VRMLAALTPSGDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTE 665
V +A + +L DL ++ + R G + L E
Sbjct: 500 VDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLRE 559
Query: 666 IGESQT 671
I + T
Sbjct: 560 IRKGNT 565
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1
Length = 174
Score = 172 bits (436), Expect = 4e-49
Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 6/168 (3%)
Query: 505 LTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQI 564
LT +Q+AL TI + + + L +P LG DAAS W++ +D +KH + SQ+
Sbjct: 7 LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQV 66
Query: 565 AAMNAATAQVVTMTSGEV--TDYSGVESAITSISHTLPEMSKGVRMLAALTP----SGDE 618
A+ A TA VV +T+G+ TDY+ V A+T+IS L EMS+GV++LAAL +G
Sbjct: 67 DAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRP 126
Query: 619 LLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEI 666
LL AA+ L A ++LL++AQP S +PRQNLL AA VG+AS +L +I
Sbjct: 127 LLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQI 174
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 181 bits (459), Expect = 2e-47
Identities = 66/403 (16%), Positives = 126/403 (31%), Gaps = 46/403 (11%)
Query: 83 YRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVEN 142
+K L V +DGT KTLL D + L + KI + + +SL +
Sbjct: 259 KSKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVS-- 316
Query: 143 KPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRK 202
+ + D ++K Q + + R++
Sbjct: 317 --------------------SLGSGSDHVM-DAISQCEQYAKEQGAQERNAPWRLFFRKE 355
Query: 203 FFFSDGNIDSHDPVQLNLLYVQARDAVLDGTHPVT-QDLACQLAGIQTHIQFGDYNPSKH 261
F + S D V NL+Y Q V G + +D +LA Q + +G +
Sbjct: 356 VFTPW-HNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILER 414
Query: 262 KPPFLDLKEFLPQSYV-KVKGIEK---KIFSEHKN----HVGLSELDAKVLYTKTCR-SL 312
+ ++P + +K +EK + HK K R
Sbjct: 415 LLSLVP--TYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKW 472
Query: 313 PTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNV 372
P F+ + ++ V V +DE ++++ + +S
Sbjct: 473 PLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDE-QEQVLLELSFPEIMAVSSSRGT 531
Query: 373 FT----LDFGDYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMSKDHFGIEGDEGSTMVE 428
+ Y+ ++ AE I+ L+ +++ + K+ D + E
Sbjct: 532 KMMAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVAL---QDNPNPAGE 588
Query: 429 DS--VSPLKATIFQHESNRVGKVNTESVAKPAVMRAGNDGARP 469
+S +S K + + + +V A R G P
Sbjct: 589 ESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFP 631
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Length = 216
Score = 162 bits (410), Expect = 4e-45
Identities = 75/211 (35%), Positives = 115/211 (54%), Gaps = 5/211 (2%)
Query: 1361 HSKQVSDSIKRLVTSIRDVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSAS 1420
H + + APGQ EC+ AI A++S LR+LD+ ++ AVSQ P S
Sbjct: 5 HHHSSGVDLGTENLYFQSKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPR-EGIS 63
Query: 1421 LQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIH 1480
+ + A EI +EPL AA+ +A + V+Q+ F+ L ++ AS +
Sbjct: 64 QEALHTQMLTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLS 123
Query: 1481 SKQQMTLLDQTKTVAECLLQVLHLIKEAGGNP-DAVNIHPDLDESIEATKEALSDITSSL 1539
QQM LLDQTKT+AE LQ+L+ KEAGGNP A + L+E+++ EA+ D+T++L
Sbjct: 124 HPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTL 183
Query: 1540 DHFT---GVVNTFVDSITKSMQQIPDPNQPN 1567
+ GVV VDSIT+++ Q+ + +
Sbjct: 184 NEAASAAGVVGGMVDSITQAINQLDEGPMGD 214
Score = 69.8 bits (170), Expect = 5e-13
Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 10/189 (5%)
Query: 930 PGQQEIEEITEIIESTYEQIHTDDF--------PRSTKPIGRLQQELSSAATGLSETTNE 981
PGQ E E + S + PR L ++ +A +S
Sbjct: 25 PGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTAVQEISHLIEP 84
Query: 982 VISSVK-NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKF 1040
+ S+ + + L Q + + L + S T S Q +L K+++ S+ +
Sbjct: 85 LASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQL 144
Query: 1041 LSTARSAALDP-SASNSKSQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQSMK 1099
L TA+ A +P A++++ L A + + +++ +L A + +I
Sbjct: 145 LYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAASAAGVVGGMVDSITQAI 204
Query: 1100 PFLDKPTEP 1108
LD+
Sbjct: 205 NQLDEGPMG 213
Score = 42.1 bits (98), Expect = 8e-04
Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 9/183 (4%)
Query: 1065 RNVADSINNLLNICTSALPGQKECDNAIRNIQSMKPFLDKPT--------EPINDMSYYE 1116
+ + S PGQ EC+ AI + S LD+ + P +S
Sbjct: 7 HSSGVDLGTENLYFQSKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEA 66
Query: 1117 CHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISE 1176
H ++ + + + +A+ A+ +E G V+ ++ L A+
Sbjct: 67 LHTQMLTAVQEISHLIEPLASAAR-AEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHP 125
Query: 1177 ATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRI 1236
++ + K A + TQ+ + A ++ + L
Sbjct: 126 QQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNE 185
Query: 1237 ASS 1239
A+S
Sbjct: 186 AAS 188
Score = 40.9 bits (95), Expect = 0.002
Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 9/194 (4%)
Query: 1213 QQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALD 1272
Q + TA + L A A S+ P + + + I+ L
Sbjct: 27 QLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTAVQEISHLIEPL- 85
Query: 1273 MNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAII 1332
+ + + L A V +S Q +L + +
Sbjct: 86 ASAARAEASQLGHKVSQMAQYFEPLTLAA-----VGAASKTLSHP--QQMALLDQTKTLA 138
Query: 1333 ESSCSMIKTAKSLAVSPKD-RPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQKECDQAIE 1391
ES+ ++ TAK +PK T + L + + ++++++ L T++ + A ++
Sbjct: 139 ESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAASAAGVVGGMVD 198
Query: 1392 AISSRLRELDEVAM 1405
+I+ + +LDE M
Sbjct: 199 SITQAINQLDEGPM 212
Score = 31.3 bits (70), Expect = 3.3
Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 11/176 (6%)
Query: 620 LDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLL 679
LD A + L +L A + + + + L
Sbjct: 44 LDQASLAAVSQQ-LAPREGISQEALHTQMLTAVQEISHLIEPLASAARAEASQ-----LG 97
Query: 680 SLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCALATSQLVACTKVVAPT-LE 737
+A L L A AS QQ +++ A + QL+ K +
Sbjct: 98 HKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQ 157
Query: 738 NPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNH 793
Q+ L AV+ + AVE L NE + + +T+ +NQL
Sbjct: 158 AAHTQEALEEAVQMMTEAVEDLTTTLNEAASAA---GVVGGMVDSITQAINQLDEG 210
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 151 bits (382), Expect = 2e-39
Identities = 53/354 (14%), Positives = 108/354 (30%), Gaps = 60/354 (16%)
Query: 88 RTLKVR-------MLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEV 140
R LKV + D+ V ++ I + N Y L + + E
Sbjct: 5 RVLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEE 64
Query: 141 ENKPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLR 200
+ + D+ + +R+K E LR
Sbjct: 65 VHWLHL--------------DMGVSNVREKF---------------ELAHPPEEWKYELR 95
Query: 201 RKFFFSD-GNIDSHDPVQLNLLYVQARDAVLDGTHP-VTQDLACQLAGIQTHIQFGDYNP 258
++ N + D LN Y Q ++ + V Q++A +L ++ +G+
Sbjct: 96 IRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRG 155
Query: 259 SKHKP--------PFLDLKEFLPQS---YVKVKGIEKKIFSEHKNHVGLSELDAKVLYTK 307
+ + + L+ F P+S VK K + K I + L+ ++ + + +
Sbjct: 156 NALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFE 215
Query: 308 TCRSLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWG 367
+ + F V +G ++ + L ++ V+
Sbjct: 216 ILSPVYRFDKECFKCA-LGSSWIISVELAIGP-EEGISYLTDKGANPTHLADFNQVQTIQ 273
Query: 368 ASS-------NVFTLDFGDYSDNYY--SVQTTEAEQIQQLIAGYIDIILKKKMS 412
S+ + L + + T AE + LI GY ++ S
Sbjct: 274 YSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGATQS 327
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 142 bits (359), Expect = 2e-36
Identities = 51/334 (15%), Positives = 102/334 (30%), Gaps = 33/334 (9%)
Query: 106 DSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKME 165
+ + V L V + + LV+ + E+ L+ + + +
Sbjct: 17 EKEDVRILKVCFYSNSFNPGK-NFKLVKCTVQTEIREIITSILLSGRIGPNIRLAEC--Y 73
Query: 166 QLRKKLKTDDEVNWIDFSKTLRE-------QGIDENEPVLLRRKFFFSD-GNIDSHDPVQ 217
LR K DE++W+ T+ E ++ L+ ++ D D
Sbjct: 74 GLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTT 133
Query: 218 LNLLYVQARDAVLDGTHP-VTQDLACQLAGIQTHIQFGDYNPSKHKPP--------FLDL 268
L Y Q R+ + V++ +A QL ++ F D + + L
Sbjct: 134 LLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGL 193
Query: 269 KEFLPQS---YVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEK 325
F P+ +K K K I + + L E + + + T + +
Sbjct: 194 DLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCEL- 252
Query: 326 MKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRR-----WGASSNVFTLDFGDY 380
+ + L + + +L + + +R V L
Sbjct: 253 --IQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIRSIRCLPLEEGQAVLQLGIEGA 310
Query: 381 SDN--YYSVQTTEAEQIQQLIAGYIDIILKKKMS 412
+ EAE + LI GY + + + S
Sbjct: 311 PQALSIKTSSLAEAENMADLIDGYCRLQGEHQGS 344
Score = 36.7 bits (84), Expect = 0.080
Identities = 33/225 (14%), Positives = 62/225 (27%), Gaps = 19/225 (8%)
Query: 6 LKICIVDR-----NVTKTMQFDPSTSVYDACRIIRDKISEA-NFGEAKDYGLFLSDGDVK 59
LK+C K ++ T + + I N A+ YGL L
Sbjct: 24 LKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSD 83
Query: 60 KGVWLEPGRNLEYYILRNGDELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICT 119
+ WL P + + L++R L L +D + +
Sbjct: 84 EIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRN 143
Query: 120 KIGITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNW 179
+ R + G L L+R +D+ L KK +
Sbjct: 144 DY---------MQRYASKVSEGMALQLGCLELRR----FFKDMPHNALDKKSNFELLEKE 190
Query: 180 IDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLNLLYVQ 224
+ +Q + +P R+ + S + + +
Sbjct: 191 VGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKFFN 235
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu
protein; NMR {Mus musculus}
Length = 158
Score = 132 bits (333), Expect = 2e-35
Identities = 48/151 (31%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 932 QQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKN-PA 990
Q++++ + +++ +D P ST Q L+ AA GL++ E++ + + P
Sbjct: 7 QRDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRGTPQ 66
Query: 991 NLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALD 1050
+L +S ++ ++ G+E+ S+E + +++S+LK +S SSSK L A++ + D
Sbjct: 67 DLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTD 126
Query: 1051 PSASNSKSQLSAAARNVADSINNLLNICTSA 1081
P++ N KSQL+AAAR V DSIN L+ +CT
Sbjct: 127 PASPNLKSQLAAAARAVTDSINQLITMCTQQ 157
Score = 50.0 bits (119), Expect = 9e-07
Identities = 23/159 (14%), Positives = 61/159 (38%), Gaps = 13/159 (8%)
Query: 1383 QKECDQAIEAISSRLRELDEVAMLA--VSQGQIPHYNSASLQMSAEKTEQAANEILTRLE 1440
Q++ D A+ A+ + L + + + L +A QAA E++
Sbjct: 7 QRDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQS----RLNEAAAGLNQAATELV---- 58
Query: 1441 PLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQ 1500
QA++ + +A + + F + + +A + + ++ K ++ +
Sbjct: 59 ---QASRGTPQDLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSK 115
Query: 1501 VLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSL 1539
+L K +P + N+ L + A ++++ + +
Sbjct: 116 LLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLITMC 154
Score = 42.7 bits (100), Expect = 3e-04
Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 10/150 (6%)
Query: 621 DAARKLCFAFTDLLKAAQPHSNQPRQ----NLLNAATRVGEASHHVLTEIGESQTNEMQD 676
+A R + A LL P S Q L AA + +A+ ++ +
Sbjct: 12 NALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELV-----QASRGTPQ 66
Query: 677 TLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCALATSQLVACTKVVAPT 735
L + + + +A P + V+++ ++++S+L+ K ++
Sbjct: 67 DLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTD 126
Query: 736 LENPACQQQLMAAVKEVANAVEGLVAMCNE 765
+P + QL AA + V +++ L+ MC +
Sbjct: 127 PASPNLKSQLAAAARAVTDSINQLITMCTQ 156
Score = 37.7 bits (87), Expect = 0.013
Identities = 25/156 (16%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 738 NPACQQQLMAAVKEVANAVEGLVAMCNETCTD--ENLNKDLTKAAAEVTKTLNQLLNHIK 795
+P Q+ + A++ V +A + L++ T + L +AAA + + +L+ +
Sbjct: 3 DPFTQRDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASR 62
Query: 796 VTTTEPA---QDVETAVEVMMSSSDRLLAASGDA---PEMVRQARILGQATAQLIQAIKG 849
T + A + + + + ++V + + ++++L+ A K
Sbjct: 63 GTPQDLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKA 122
Query: 850 DAENEPDSELQRRLLAAAKNLAEATARMVEAARQCA 885
+ + L+ +L AAA+ + ++ +++ Q A
Sbjct: 123 LSTDPASPNLKSQLAAAARAVTDSINQLITMCTQQA 158
Score = 37.3 bits (86), Expect = 0.021
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 2094 AAASIDAAAKKLSSLR---PRRSLQETDETLNFDEMILEAAKSIAAATSALVKAASASQR 2150
A ++ A+K+L S + QE LN EAA + A + LV+A+ + +
Sbjct: 13 ALRAVGDASKRLLSDLLPPSTGTFQEAQSRLN------EAAAGLNQAATELVQASRGTPQ 66
Query: 2151 ELIDAGR----MSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVVQ- 2205
+L A L + + + ++S + ++ ++ + AA ++
Sbjct: 67 DLARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTD 126
Query: 2206 --GAGTEEKLISSAKQVASSTAQLLVACKVKA 2235
+ +L ++A+ V S QL+ C +A
Sbjct: 127 PASPNLKSQLAAAARAVTDSINQLITMCTQQA 158
Score = 35.4 bits (81), Expect = 0.074
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 1212 TQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKAL 1271
TQ+ + A + + L + + S T A+ ++A + + LVQ +
Sbjct: 6 TQRDVDNALRAVGDASKRL-LSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRG- 63
Query: 1272 DMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAI 1331
Q +A+ + + V + + ++S + I
Sbjct: 64 -------TPQDLARASGRFGQDFSTFLEAG-----VEMAGQAPSQE--DRAQVVSNLKGI 109
Query: 1332 IESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVT 1374
SS ++ AK+L+ P LA ++ V+DSI +L+T
Sbjct: 110 SMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLIT 152
Score = 34.6 bits (79), Expect = 0.17
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 1189 QTQFSRAANAIKHACNTLTNPSTTQQQILTAATV-IAKHTSSLCNACRIASSKTTNPVAK 1247
Q++ + AA + A L S Q L A+ + S+ A + + + +
Sbjct: 40 QSRLNEAAAGLNQAATELVQASRGTPQDLARASGRFGQDFSTFLEAGVEMAGQAPSQEDR 99
Query: 1248 RHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQ-VCTQATKPLLDAVDSLVS 1299
V + K ++ S++ L+ KAL + N + A + + D+++ L++
Sbjct: 100 AQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLIT 152
Score = 33.4 bits (76), Expect = 0.40
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 36/181 (19%)
Query: 1085 QKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANHAKHSEY 1144
Q++ DNA+R + L P + ++ E + + E + L + T + ++ +
Sbjct: 7 QRDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRGTP- 65
Query: 1145 DAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACN 1204
+ FS A
Sbjct: 66 QDLARASGRFG----------------------------------QDFSTFLEAGVEMAG 91
Query: 1205 TLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANL 1264
+ + Q+++ I+ +S L A + S+ +P K +A+ V +S L
Sbjct: 92 QAPSQE-DRAQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQL 150
Query: 1265 V 1265
+
Sbjct: 151 I 151
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto
membrane, phosphoprotein, structural protein,
acetylation, membrane; NMR {Mus musculus}
Length = 165
Score = 127 bits (320), Expect = 1e-33
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 1595 TGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVGSSKEIARISQEMMTK 1654
GVV VDSIT+++ Q+ + D S+VDY T MV ++K IA QEM+TK
Sbjct: 13 AGVVGGMVDSITQAINQLDEGPMG------DPEGSFVDYQTTMVRTAKAIAVTVQEMVTK 66
Query: 1655 SWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRLCGAVHDLGTACINTVTMA 1714
S + + + L++QLT Y +L + A +A N E+ + V +LG C VT A
Sbjct: 67 SNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKA 126
Query: 1715 ATCQTS-GDDYTHREFADTNRVLAEKVSQVLYALQAGSR 1752
Q S D YT +E + R ++EKVS VL ALQAG+R
Sbjct: 127 GALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAGNR 165
Score = 79.7 bits (196), Expect = 5e-17
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 8/166 (4%)
Query: 1753 GTQACINAAST----VSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVE 1808
G N A++ V G++ + I G +F D++ +++TAKA+
Sbjct: 1 GIDPFTNEAASAAGVVGGMVDSITQAINQLDEGP--MGDPEGSFVDYQTTMVRTAKAIAV 58
Query: 1809 DTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVT 1868
+ +V + +S E+L A S +LA K A + N E + + V+++
Sbjct: 59 TVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAA--ENEEIGAHIKHRVQELG 116
Query: 1869 TALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKA 1914
L+ A + L E A+ + V+ +L ++A
Sbjct: 117 HGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQA 162
Score = 46.6 bits (110), Expect = 1e-05
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 4/142 (2%)
Query: 938 ITEIIESTYEQIHTDDFPRSTKPIGRL---QQELSSAATGLSETTNE-VISSVKNPANLP 993
+ +++S + I+ D P G Q + A ++ T E V S +P L
Sbjct: 16 VGGMVDSITQAINQLDEGPMGDPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELG 75
Query: 994 ASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSA 1053
+ Q + L E+ E + ++ + S ++ A + PS
Sbjct: 76 PLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSD 135
Query: 1054 SNSKSQLSAAARNVADSINNLL 1075
+K +L AR V++ ++++L
Sbjct: 136 VYTKKELIECARRVSEKVSHVL 157
Score = 44.3 bits (104), Expect = 1e-04
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 675 QDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAP 734
Q T++ AKA+A T +V K+ + L P A + +L + K A
Sbjct: 46 QTTMVRTAKAIAVTVQEMVTKSNTSPEELGP--------LANQLTSDYGRLASQAKPAAV 97
Query: 735 TLENPACQQQLMAAVKEVANAVEGLV---AMCNETCTDENLNKDLTKAAAEVTKTLNQLL 791
EN + V+E+ + LV + +D K+L + A V++ ++ +L
Sbjct: 98 AAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVL 157
Score = 30.8 bits (69), Expect = 3.0
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 7/142 (4%)
Query: 1930 IEAIAQEIRALNSVEQVKSTAS----PEELVRCTKPITQATAKAVAAGNSCKQEDVIVAA 1985
+++I Q I L+ S +VR K I + V N+ +E +A
Sbjct: 20 VDSITQAINQLDEGPMGDPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLAN 79
Query: 1986 NMGRKAISDMLAVCKGCSNAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIA 2045
+ + + K + AAE E+ QE+ L+ + P D
Sbjct: 80 QLT-SDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDV-- 136
Query: 2046 DSKQALPPISRRIAQSLTELVS 2067
+K+ L +RR+++ ++ +++
Sbjct: 137 YTKKELIECARRVSEKVSHVLA 158
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein;
NMR {Mus musculus} SCOP: a.216.1.1
Length = 139
Score = 123 bits (310), Expect = 1e-32
Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 761 AMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQD--VETAVEVMMSSSDR 818
+ D L + + AA VT+ LN+LL H+K T + A + +++ ++
Sbjct: 2 SHMQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTEN 61
Query: 819 LLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMV 878
+ ++ GDA EMVRQARIL QAT+ L+ AIK DAE E D E R+LL+AAK LA+ATA+MV
Sbjct: 62 IFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMV 121
Query: 879 EAARQCASHPQDIMKQE 895
EAA+ A+HP +Q+
Sbjct: 122 EAAKGAAAHPDSEEQQQ 138
Score = 54.4 bits (130), Expect = 2e-08
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Query: 614 PSGDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIGE-SQTN 672
+ AA + A +LL+ + H+ A R +A+ +LT +
Sbjct: 12 QLLRGVGAAATAVTQALNELLQHVKAHATGAGP-----AGRYDQATDTILTVTENIFSSM 66
Query: 673 EMQDTLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCALATSQLVACTKV 731
++ A+ +A T+ LV K+ A ++++A A AT+++V K
Sbjct: 67 GDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKG 126
Query: 732 VAPTLENPACQQQ 744
A ++ QQ+
Sbjct: 127 AAAHPDSEEQQQR 139
Score = 38.2 bits (88), Expect = 0.007
Identities = 21/113 (18%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 964 LQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQ 1023
L + + +AAT +++ NE++ VK A + +Y + ++ + I S+
Sbjct: 13 LLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAG-- 70
Query: 1024 TKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLN 1076
+M+ + ++ ++S ++ ++ A S + +L +AA+ +AD+ ++
Sbjct: 71 -EMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVE 122
Score = 36.7 bits (84), Expect = 0.020
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 6/134 (4%)
Query: 1846 AASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNV 1905
+ + + + A VT AL +L+Q KA + + A + V
Sbjct: 3 HMQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAG----RYDQATDTILTV 58
Query: 1906 TSLLKTVKAVEDEHTRGTRALESTIEAIAQEIRALNSVEQVKSTASPEELVRCTKPITQA 1965
T + + E R R L + I+A E + +L+ K + A
Sbjct: 59 TENIFSSMGDAGEMVRQARILAQATSDLVNAIKA--DAEGESDLENSRKLLSAAKILADA 116
Query: 1966 TAKAVAAGNSCKQE 1979
TAK V A
Sbjct: 117 TAKMVEAAKGAAAH 130
Score = 30.9 bits (69), Expect = 2.4
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 21/154 (13%)
Query: 1237 ASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDAVDS 1296
+ T + R +A V + L+Q +KA QAT +L ++
Sbjct: 4 MQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRY--DQATDTILTVTEN 61
Query: 1297 LVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWK 1356
+ S ++ + +++ ++ K+ A D +
Sbjct: 62 IFSSMGDAG-----------------EMVRQARILAQATSDLVNAIKADAEGESDLENSR 104
Query: 1357 LLADHSKQVSDSIKRLVTSIRDVA--PGQKECDQ 1388
L +K ++D+ ++V + + A P +E Q
Sbjct: 105 KLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQ 138
Score = 29.0 bits (64), Expect = 10.0
Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 23/144 (15%)
Query: 2002 CSNAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQALPPISRRIAQS 2061
A E +L A V ELLQ V + G R Q+
Sbjct: 4 MQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPA------------GRYDQA 51
Query: 2062 LTELVSIAEQLKGSNWMDPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDETL 2121
++++ E + S D ++ + +L A S A K + E + L
Sbjct: 52 TDTILTVTENIFSSM---GDAGEMVRQARILAQATSDLVNAIKADA--------EGESDL 100
Query: 2122 NFDEMILEAAKSIAAATSALVKAA 2145
+L AAK +A AT+ +V+AA
Sbjct: 101 ENSRKLLSAAKILADATAKMVEAA 124
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus
musculus} SCOP: a.24.9.2
Length = 137
Score = 117 bits (295), Expect = 1e-30
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 1623 ASDSVDSYVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIG 1682
D S+VDY T MV ++K IA QEM+TKS + + + L++QLT Y +L +
Sbjct: 7 MGDPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKP 66
Query: 1683 AVASASNPEVSGRLCGAVHDLGTACINTVTMAATCQTS-GDDYTHREFADTNRVLAEKVS 1741
A +A N E+ + V +LG C VT A Q S D YT +E + R ++EKVS
Sbjct: 67 AAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVS 126
Query: 1742 QVLYALQAGSR 1752
VL ALQAG+R
Sbjct: 127 HVLAALQAGNR 137
Score = 54.0 bits (129), Expect = 2e-08
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 1787 KENDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGA 1846
+F D++ +++TAKA+ + +V + +S E+L A S +LA K A
Sbjct: 9 DPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAA 68
Query: 1847 ASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVT 1906
+ N E + + V+++ L+ A + L E A+ + V+
Sbjct: 69 VAA--ENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVS 126
Query: 1907 SLLKTVKA 1914
+L ++A
Sbjct: 127 HVLAALQA 134
Score = 52.8 bits (126), Expect = 6e-08
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Query: 965 QQELSSAATGLSETTNE-VISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQ 1023
Q + A ++ T E V S +P L + Q + L E+ E
Sbjct: 18 QTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIG 77
Query: 1024 TKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLL 1075
+ ++ + S ++ A + PS +K +L AR V++ ++++L
Sbjct: 78 AHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVL 129
Score = 43.6 bits (102), Expect = 9e-05
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 673 EMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSATKCALATSQLVACTKVV 732
+ Q T++ AKA+A T +V K+ + L P A + +L + K
Sbjct: 16 DYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGP--------LANQLTSDYGRLASQAKPA 67
Query: 733 APTLENPACQQQLMAAVKEVANAVEGLV---AMCNETCTDENLNKDLTKAAAEVTKTLNQ 789
A EN + V+E+ + LV + +D K+L + A V++ ++
Sbjct: 68 AVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSH 127
Query: 790 LL 791
+L
Sbjct: 128 VL 129
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR
{Mus musculus}
Length = 131
Score = 112 bits (282), Expect = 6e-29
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 787 LNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQA 846
++ H PA + A + +++ ++ + ++ GDA EMVRQARIL QAT+ L+ A
Sbjct: 2 IDPFTAHAT--GAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNA 59
Query: 847 IKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQ 906
IK DAE E D E R+LL+AAK LA+ATA+MVEAA+ A+HP +Q+ L E LR
Sbjct: 60 IKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRM 119
Query: 907 AATPT 911
A
Sbjct: 120 ATNAA 124
Score = 42.5 bits (99), Expect = 2e-04
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 2184 SAARLVAAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATH 2243
A AT T + ++ G +++ A+ +A +T+ L+ A K A+ ESD +
Sbjct: 13 GPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLEN 72
Query: 2244 --RLQSAGNAVKRATDNLVRAAQQAIQQ 2269
+L SA + AT +V AA+ A
Sbjct: 73 SRKLLSAAKILADATAKMVEAAKGAAAH 100
Score = 31.7 bits (71), Expect = 1.2
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 25/109 (22%)
Query: 2122 NFDEMILEAAKSIAAATSALVKAASASQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEG 2181
+ EM+ A+ +A ATS LV A A E D + S
Sbjct: 38 DAGEMV-RQARILAQATSDLVNAIKADAEG---------------------ESDLENSRK 75
Query: 2182 LISAARLVAAATHTFVEAANSVVQGAG---TEEKLISSAKQVASSTAQL 2227
L+SAA+++A AT VEAA +++L +A+ + +T
Sbjct: 76 LLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATNAA 124
Score = 30.1 bits (67), Expect = 3.8
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 1948 STASPEELVRCTKPITQATA--------KAVAAGNSCKQEDVIVAANMGRKAISDMLAVC 1999
S E+VR + + QAT+ A + ++ AA + A + M+
Sbjct: 35 SMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAA 94
Query: 2000 KGCSNAAETHELCVKTLDAGQEVAVQYRELLQTVLH 2035
KG + ++ E + +A + + + Q +
Sbjct: 95 KGAAAHPDSEEQQQRLREAAEGLRMATNAAAQNAIK 130
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo
sapiens} PDB: 1st6_A
Length = 1066
Score = 124 bits (310), Expect = 2e-28
Identities = 135/1126 (11%), Positives = 336/1126 (29%), Gaps = 132/1126 (11%)
Query: 1165 VAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTT----------QQ 1214
Q S+LV + E + A++ A + L ++
Sbjct: 17 AQQISHLVIMHEEGEVDGKA----IPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKR 72
Query: 1215 QILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMN 1274
+ A + + L A ++ S + A+ + + ++ + + T++L+ ++
Sbjct: 73 DMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVR 132
Query: 1275 YNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAIIES 1334
+ K +L+ + + V + + G
Sbjct: 133 K-------IIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTK--------------- 170
Query: 1335 SCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIR----DVAPGQKECDQAI 1390
M K + +L + V + + L+++++ + ++A+
Sbjct: 171 ---MAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEAL 227
Query: 1391 EAISSRLRELDEVAMLAVSQGQIPHYN-SASLQMSAEKTEQAANEILTRLEPLRQAAKYQ 1449
+ + + ++ + Q+ ++ A E ++A I ++L + +
Sbjct: 228 KNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDP 287
Query: 1450 AESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQVLHLIKEAG 1509
+ S + Q + A + + ++ + + + + + + G
Sbjct: 288 SASPGDAGEQAIRQILDEAGKVGELCAGK-ERREILGTCKMLGQMTDQVADLRA--RGQG 344
Query: 1510 GNPDAVNIHPDLDESIEATKEALSDITSSLDHFTGVVNTFVDSITKSMQQIPDPNQPNSH 1569
+P A+ + + ++ + + L+ T + I + + DPN
Sbjct: 345 SSPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEG 404
Query: 1570 YASDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDS 1629
+ + + ++ + + I+ ++ D +
Sbjct: 405 E--EQIRGALAEARKIAELCDDPKERDDILRSLGEISALTSKLADLRRQG---------- 452
Query: 1630 YVDYHTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASN 1689
G S E +++++ + ++++ +++
Sbjct: 453 --------KGDSPEARALAKQV----ATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQA 500
Query: 1690 PEVSGRLCGAVHDLGTACINTVTMAATCQTSGDDYTHRE-FADTNRVLAEKVSQVLYALQ 1748
+G A I + + +R+ + + +Q+
Sbjct: 501 QRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAA 560
Query: 1749 AGSRGTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVE 1808
G + AS + + DL + A ++ +D F+D I A A
Sbjct: 561 RGEGESPQARALASQLQDSLKDLKARMQEAMT-----QEVSDVFSDTTTPIKLLAVAATA 615
Query: 1809 DTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVT 1868
A + +E A N + +L + AA++G+ N + +VK
Sbjct: 616 -----PPDAPNREEVFDERAANFENHSGKLGATAEK-AAAVGTANKSTVEGIQASVKTAR 669
Query: 1869 TALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALES 1928
++ A + N H + + NV + V DE L++
Sbjct: 670 ELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLV----DEAIDTKSLLDA 725
Query: 1929 TIEAIAQEIRALNSVEQVKSTASPEELVRCTKPITQATAKAVAAGNSCKQEDVIVAANMG 1988
+ EAI ++L +C + + + A A
Sbjct: 726 SEEAI------------------KKDLDKCKVAMANIQPQMLVA-----------GATSI 756
Query: 1989 RKAISDMLAVCKGCSNAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSK 2048
+ + +L V K +E + A E++ ++ + D +
Sbjct: 757 ARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGL--Q 814
Query: 2049 QALPPISRRIAQSLTELVSIAEQLKGSNWMDPDDPTVIAETELLGAAASIDAAAKKLSSL 2108
++ RI ++ ++ + + P D + T+ L +
Sbjct: 815 KSFLDSGYRILGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPR 874
Query: 2109 RPRRSLQETDETLNFDEMILEAAKSIAAATSAL---VKAASASQRELIDAGRMSRRPLTS 2165
P +E DE + + + A L + S+ ++I A + +
Sbjct: 875 PPPP--EEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAE 932
Query: 2166 SDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSV---VQGAGTEEKLISSAKQVAS 2222
+ LI A+ +A A+ A V L+ +++ +
Sbjct: 933 MS--RLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPT 990
Query: 2223 STAQLLVACKVKADPESDATHRLQSAGNAVKRATDNLVRAAQQAIQ 2268
+ QL + VKA R + ++AT+ LV AQ +Q
Sbjct: 991 ISTQLKILSTVKATMLG----RTNISDEESEQATEMLVHNAQNLMQ 1032
Score = 76.1 bits (185), Expect = 1e-13
Identities = 95/842 (11%), Positives = 237/842 (28%), Gaps = 94/842 (11%)
Query: 488 NIAHSPTTTQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLK 547
+ + SP + + IL + K + I K L + + + A +
Sbjct: 286 DPSASPGDAGEQAIRQILDEAGKVGELCAGKERREILGTCKML--GQMTDQVADLRARGQ 343
Query: 548 WKETTVDANKHNVSSQIAAMNAATAQVVTMTSGEVTDYSGVESAITSISHTLPEMSKGVR 607
VS + + A + I + + L + + G
Sbjct: 344 GSSPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPE 403
Query: 608 MLAALTPSGDELLDAARKLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGEASHHVLTEIG 667
+ L ARK+ D + + + +++ + +
Sbjct: 404 GEEQI----RGALAEARKIAELCDD--PKERDDILRSLGEISALTSKLADLRRQGKGDSP 457
Query: 668 ESQ--TNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQ-----QTSVITSATKCAL 720
E++ ++ L +L A +V Q +
Sbjct: 458 EARALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQA 517
Query: 721 ATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAA 780
A LVA +A + P +Q L+A V L + + + L
Sbjct: 518 AIRGLVAEGHRLANVMMGPY-RQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQL 576
Query: 781 AEVTKTLNQLLNHIKVT-TTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQA 839
+ K L + ++ D T ++++ ++ A +A
Sbjct: 577 QDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENH 636
Query: 840 TAQLIQAIKGDAENE-PDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALV 898
+ +L + A + + A+ K E T ++V AAR +P + E
Sbjct: 637 SGKLGATAEKAAAVGTANKSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFE 696
Query: 899 TTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDDFPRST 958
T + E + E + +++++ E I D
Sbjct: 697 TMKNQWIDNV-----------------EKMTGLVDEAIDTKSLLDASEEAIKKD------ 733
Query: 959 KPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTE 1018
+ + + +++ P L A + + ++ + + +E
Sbjct: 734 --LDKCKVAMANI----------------QPQMLVAGATSIARRANRILLVAKREVENSE 775
Query: 1019 SRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNIC 1078
+ + + ++ +S + S + A++ A + S + + + ++ +
Sbjct: 776 DPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAF 835
Query: 1079 TSALPGQKECDNAIRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEGMTGMANH 1138
P + ++ EK + E G +
Sbjct: 836 QPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVIN 895
Query: 1139 AKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANA 1198
+ + A+ + ++ +I + R A
Sbjct: 896 ------------------------QPMMMAARQLHDEARKWSSKGNDIIAAAK--RMALL 929
Query: 1199 IKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVA 1258
+ + S T++ ++ A IAK + + + + + T+ + + +Q + +
Sbjct: 930 MAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIP 989
Query: 1259 NSTANL---------VQEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNR 1309
+ L + + +E+ ++ + L+ +V V A + R
Sbjct: 990 TISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIR 1049
Query: 1310 SS 1311
+
Sbjct: 1050 TD 1051
Score = 45.2 bits (105), Expect = 3e-04
Identities = 137/1117 (12%), Positives = 303/1117 (27%), Gaps = 125/1117 (11%)
Query: 752 VANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEV 811
VA + LV M E D DLT A V ++ L V E
Sbjct: 16 VAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNL--------------VRVGKET 61
Query: 812 MMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLA 871
+ ++ D++L +M + A +L+QA + + + L+ ++ +
Sbjct: 62 VQTTEDQILKR-----DMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGIL 116
Query: 872 EATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPG 931
T+ ++ + V ++ + L Y + + +
Sbjct: 117 SGTSDLLLTFDEAE---------------VRKIIRVCKGILEYLTVAEVVETMEDLVTYT 161
Query: 932 QQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPAN 991
+ +T++ + E+ + L ++ + E +IS++K
Sbjct: 162 KNLGPGMTKMAKMIDERQQELTHQ-------EHRVMLVNSMNTVKELLPVLISAMKIFVT 214
Query: 992 LPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDP 1051
S Q ++R + +S+ + + S A
Sbjct: 215 TKNSKNQGIEEAL-------------KNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASK 261
Query: 1052 SASNSKSQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNIQSMKPFLDKPTEPIND 1111
K L++ + + L + S ++ I + +
Sbjct: 262 DTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQI--LDEAGKVGELCAGKERR 319
Query: 1112 MSYYECHNLIMEKSKSLGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYL 1171
C L + G + + VS + L V A+
Sbjct: 320 EILGTCKMLGQMTDQVADLRARGQGSSPVAMQ------KAQQVSQGLDVLTAKVENAARK 373
Query: 1172 VAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLC 1231
+ + + A I A N L +P+ +
Sbjct: 374 LEAMTNSKQS-------------IAKKIDAAQNWLADPN--------GGPEGEEQIRGAL 412
Query: 1232 NACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLL 1291
R + +P + ++S +++ T+ L + + + + + Q L
Sbjct: 413 AEARKIAELCDDPKERDDILRSLGEISALTSKLADLRRQGKGD-SPEARALAKQVATALQ 471
Query: 1292 DAVDSLVSFAYSPEFVNRSSHFGDSTLTAQ----EPILSAGEAIIESSCSMIKTAKSLAV 1347
+ + + H AQ P + + ++ LA
Sbjct: 472 NLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLA- 530
Query: 1348 SPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQKECDQAIEAISSRLRELDEVAMLA 1407
+ P + L +V +L + + L++L A
Sbjct: 531 NVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQEA 590
Query: 1408 VSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFSVNQLVTSFDSL 1467
++Q ++L A + E L
Sbjct: 591 MTQ----------EVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKL 640
Query: 1468 ASDSMNVASNLIHSKQQMTLLDQT-KTVAECLLQVLHLIKEAGGNPDAVNIHPDLDESIE 1526
+ + A+ +K + + + KT E QV+ + NP + +
Sbjct: 641 GATAEKAAAVGTANKSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKN 700
Query: 1527 ATKEALSDITSSLDHFTGVVNTFVDSITKSMQQI-----------PDPNQPNSHYASDSV 1575
+ + +T +D + S + + P + +
Sbjct: 701 QWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRA 760
Query: 1576 DSYVDYHTRMVGSSSLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVD--SYVDY 1633
+ + R V +S F V D ++K++ + + + SD S++D
Sbjct: 761 NRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDS 820
Query: 1634 HTRMVGSSKEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVS 1693
R++G+ ++ Q + L K P
Sbjct: 821 GYRILGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEE 880
Query: 1694 GRLCGAVHDLGTACINTVTMAAT---CQTSGDDYTHREFADTNRVLAEKVSQVLYALQAG 1750
G + MAA + + + +A ++++ ++ G
Sbjct: 881 KDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGG 940
Query: 1751 SRGTQACINAASTVSGIIGDLDTTIMF--------ATAGTLHAEKENDTFADHRENILKT 1802
S +A I A ++ ++ L E + IL T
Sbjct: 941 SGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILST 1000
Query: 1803 AKA-LVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQL 1838
KA ++ T + + E L AQN + ++ +
Sbjct: 1001 VKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKET 1037
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR
{Mus musculus}
Length = 168
Score = 80.1 bits (197), Expect = 4e-17
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 4/159 (2%)
Query: 1753 GTQACINAASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKT 1812
G +A S V + DL A G L +T +++ + KA+
Sbjct: 7 GPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPL-PGETMEKCTQDLGNSTKAVSSAIAK 65
Query: 1813 LVAGAASSQEQLA-VAAQNAVSTIVQLAEVVKFGAASLGSNNPEAQVLLINAVKDVTTAL 1871
L+ A E A +AA++ + LA+ + AA +++P Q ++++ DV
Sbjct: 66 LLGEIAQGNENYAGIAARDVAGGLRSLAQAARGVAAL--TSDPAVQAIVLDTASDVLDKA 123
Query: 1872 GDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLK 1910
LI+ K ASG + L + AK + + +
Sbjct: 124 SSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVS 162
Score = 70.1 bits (171), Expect = 1e-13
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Query: 1208 NPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANLVQE 1267
+P T ++ +A +V+ L A P+ + +D+ NST +
Sbjct: 3 DPFTGPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSA 62
Query: 1268 IKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPILSA 1327
I L + N A + D L S A + V + S Q +L
Sbjct: 63 IAKLLGEIAQGNENYAGIAAR---DVAGGLRSLAQAARGVAALT----SDPAVQAIVLDT 115
Query: 1328 GEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLVTSIRDVAPGQK 1384
+++ + S+I+ AK + P D + + LA +K V+ ++ R V+ + PGQ+
Sbjct: 116 ASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSCL----PGQR 168
Score = 65.5 bits (159), Expect = 4e-12
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 6/151 (3%)
Query: 617 DELLDAARKLCFAFTDLLKAAQPHSNQ--PRQNLLNAATRVGEASHHVLTEIGESQTNEM 674
D L + L ++ AA+ + P + + +G ++ V + I +
Sbjct: 12 DSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKLLGEIA 71
Query: 675 Q---DTLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKCALATSQLVACTK 730
Q + A+ VA +L A+ VA+ P Q V+ +A+ S L+ K
Sbjct: 72 QGNENYAGIAARDVAGGLRSLAQAARGVAALTSDPAVQAIVLDTASDVLDKASSLIEEAK 131
Query: 731 VVAPTLENPACQQQLMAAVKEVANAVEGLVA 761
+ +P QQ+L K V A+ V+
Sbjct: 132 KASGHPGDPESQQRLAQVAKAVTQALNRCVS 162
Score = 59.7 bits (144), Expect = 5e-10
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 966 QELSSAATGLSETTNEVISSVK--NPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQ 1023
Q+L ++ +S +++ + N +++ + L++L + + T Q
Sbjct: 50 QDLGNSTKAVSSAIAKLLGEIAQGNENYAGIAARDVAGGLRSLAQAARGVAALTSDPAVQ 109
Query: 1024 TKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNICTSALP 1083
+L + V +S + A+ A+ P S+ +L+ A+ V ++N C S LP
Sbjct: 110 AIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNR----CVSCLP 165
Query: 1084 GQK 1086
GQ+
Sbjct: 166 GQR 168
Score = 55.5 bits (133), Expect = 2e-08
Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 2/159 (1%)
Query: 1382 GQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEP 1441
G E D A+ + + ++L E+ A G++ +++ + + + + +
Sbjct: 7 GPLEMDSALSVVQNLEKDLQEIKA-AARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAK 65
Query: 1442 LRQAAKYQAESIA-FSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQ 1500
L E+ A + + SLA + VA+ Q +LD V +
Sbjct: 66 LLGEIAQGNENYAGIAARDVAGGLRSLAQAARGVAALTSDPAVQAIVLDTASDVLDKASS 125
Query: 1501 VLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSL 1539
++ K+A G+P L + +A +AL+ S L
Sbjct: 126 LIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSCL 164
Score = 44.3 bits (104), Expect = 8e-05
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 20/162 (12%)
Query: 738 NPAC-QQQLMAAVKEVANAVEGLVAMCNETC----------TDENLNKDLTKAAAEVTKT 786
+P ++ +A+ V N + L + T E +DL + V+
Sbjct: 3 DPFTGPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSA 62
Query: 787 LNQLLNHIKV----TTTEPAQDVETAVEVMMSSSDRLLAASGDAPE----MVRQARILGQ 838
+ +LL I A+DV + + ++ R +AA P ++ A +
Sbjct: 63 IAKLLGEIAQGNENYAGIAARDVAGGLRSLAQAA-RGVAALTSDPAVQAIVLDTASDVLD 121
Query: 839 ATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEA 880
+ LI+ K + + D E Q+RL AK + +A R V
Sbjct: 122 KASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSC 163
Score = 37.4 bits (86), Expect = 0.020
Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 33/180 (18%)
Query: 2090 ELLGAAASIDAAAKKLSSLR----PRRSLQETDETL-NFDEMILEAAKSIAAATSALVKA 2144
E+ A + + K L ++ + ET+ + + + K++++A + L+
Sbjct: 10 EMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKLLGE 69
Query: 2145 ASASQRELIDAGRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSVV 2204
+ G + D L AAR VAA T
Sbjct: 70 IAQGNENYA---------------GIAARDVAGGLRSLAQAARGVAALT----------- 103
Query: 2205 QGAGTEEKLISSAKQVASSTAQLLVACK-VKADPESDATH-RLQSAGNAVKRATDNLVRA 2262
+ ++ +A V + L+ K P + RL AV +A + V
Sbjct: 104 SDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSC 163
>1ls4_A Apolp-III, apolipophorin-III; helix-bundle, exchangeable
apolipoprotein, lipid transport; NMR {Locusta migratoria}
SCOP: a.63.1.1
Length = 180
Score = 80.0 bits (196), Expect = 7e-17
Identities = 30/169 (17%), Positives = 69/169 (40%), Gaps = 8/169 (4%)
Query: 1372 LVTSIRDVAPGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQA 1431
+ R A G +A++ ++ + + +P + A ++ +
Sbjct: 12 VAAQARPDAAGHVNIAEAVQQLNHTIVNAAHELHETLG---LPTPDEALNLLT-----EQ 63
Query: 1432 ANEILTRLEPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQT 1491
AN T++ + + K +AE SV + + +F ++S++ A+ ++ + Q+ L
Sbjct: 64 ANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSA 123
Query: 1492 KTVAECLLQVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSLD 1540
T Q + +A + L E+ E TKEA +++ +S+
Sbjct: 124 LTNVGHQWQDIATKTQASAQEAWAPVQSALQEAAEKTKEAAANLQNSIQ 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.8 bits (201), Expect = 2e-15
Identities = 95/596 (15%), Positives = 187/596 (31%), Gaps = 192/596 (32%)
Query: 1259 NSTANLVQEI--KALDMNYN---EKNHQVCTQ---ATKPLLDAVDSL--VSFAYSPEFVN 1308
+ +VQ+ + L +NY Q T+ ++ D L + ++ V+
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 1309 RSSHFGDSTLTAQEPILSAGEAIIESSCSMIKTAKSLAV-----SPKDRPTWKLLADHSK 1363
R +P L +A++E ++ AK++ + S K TW +A
Sbjct: 133 R-----------LQPYLKLRQALLE-----LRPAKNVLIDGVLGSGK---TW--VA---L 168
Query: 1364 QVSDSIKRLVTSIRDVAPGQ------KECDQA---IEAISSRLRELDEVAMLAVSQGQIP 1414
V S K ++ + K C+ +E + L ++D P
Sbjct: 169 DVCLSYK-----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------------P 211
Query: 1415 HYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQ-----------AESI-AFSVN--QL 1460
++ S S S K + I L L ++ Y+ A++ AF+++ L
Sbjct: 212 NWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 1461 VTSFDSLASDSMNVAS----NLIHSKQQMTLLDQTKTVAECLLQVLH-----LIKEA-GG 1510
+T+ +D ++ A+ +L H +T D+ K++ LL+ L L +E
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL---LLKYLDCRPQDLPREVLTT 325
Query: 1511 NPDAVNI-------HPD------------LDESIEATKEALS------------------ 1533
NP ++I L IE++ L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 1534 DITSSL------DHFTGVVNTFVDS-ITKSM-QQIPDPNQPNSHYASDSVDSYVDYHTRM 1585
I + L D V V+ S+ ++ P + + Y++ ++
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP------SIYLELKVKL 439
Query: 1586 VGSSSLDHFTGVVNTFVDSITKSMQQIPDPNQPSSHYASDSVDSY----VDYHTRMVGSS 1641
+L H + VD IP S +D Y + +H + +
Sbjct: 440 ENEYAL-H-----RSIVDHY-----NIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 1642 KEIARISQ------------EMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASN 1689
+ + + +W+ S+ QL Y D ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICD--------ND 538
Query: 1690 PEVSGRLCGAVHDLGTACINTVTMAATC--QTSGDDYTHREFADTNRVLAEKVSQV 1743
P+ + + L N + T + + A+ + E QV
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIA-------LMAEDEAIFEEAHKQV 587
Score = 67.6 bits (164), Expect = 5e-11
Identities = 60/458 (13%), Positives = 122/458 (26%), Gaps = 171/458 (37%)
Query: 10 IVD--RNVTKTMQFD-------PSTSVYDACRIIRDK---ISEANFGEA--KDYGLFLSD 55
+ D +++ + D + + K + + E +Y FL
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMS 96
Query: 56 GDVKKGVWLEPGRNLEYYILRNGDELEYRRKMRTLKVRMLDGTLKTLLVDDSQPVANLMV 115
K +P YI E R ++ D+Q A
Sbjct: 97 P--IKTEQRQPSMMTRMYI-------EQRDRLYN----------------DNQVFA---- 127
Query: 116 VICTKIGITNHDEYSLVRENPEDEVEN-----KPN----------FG--TLTLKRKKEEK 158
+Y++ R P ++ +P G + L +
Sbjct: 128 ------------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-----DV 170
Query: 159 ERDLKMEQLRKKLKTDDEVNWIDFSKTLREQGIDENEPVLLRRKFFFSDGNIDSHDPV-- 216
K++ K D ++ W++ N +S + V
Sbjct: 171 CLSYKVQC-----KMDFKIFWLNL-------------------------KNCNSPETVLE 200
Query: 217 QLNLLYVQARDAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLKEFLPQSY 276
L L Q + + + ++I+ ++ L
Sbjct: 201 MLQKLLYQ-----------IDPNW-TSRSDHSSNIKL----------RIHSIQAEL---- 234
Query: 277 VKVKGIEKKIFSEHKNHVGLSELD----AKVL--YTKTCRSLPT---YGVTFFLVKEKMK 327
+++ L L AK + +C+ L T VT FL
Sbjct: 235 -------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 328 GKNKLVPRLLGVTKDSVLRL---------DERTKEIMKTWPLTTVRRWGASSNVFTLDFG 378
L + +T D V L + +E++ T P + S D
Sbjct: 288 -HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIR----DGL 341
Query: 379 DYSDNYYSVQTTEAEQIQQLIAGYIDIILKKKMSKDHF 416
DN+ + +++ +I ++ +L+ + F
Sbjct: 342 ATWDNW---KHVNCDKLTTIIESSLN-VLEPAEYRKMF 375
Score = 66.4 bits (161), Expect = 1e-10
Identities = 62/404 (15%), Positives = 123/404 (30%), Gaps = 146/404 (36%)
Query: 1 MATLSLKIC-IVDRNV--TKTMQ-FDPSTSVYDACRII---RDK-----ISEAN------ 42
+ + + C +V NV K F+ S C+I+ R K +S A
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISL 291
Query: 43 ------FGEAKDYGLFL-----SDGD----VKKGVWL-----------EPGRNLEYYILR 76
+ L L D V + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHV 350
Query: 77 NGDEL--------------EYRRKMRTLKVRMLD-----GTLKTLLVDDSQPVANLMVVI 117
N D+L EYR+ L V L + D + ++V
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 118 CTKIGITNHDEYSLVRENPEDEVENKPNFGTLTL------KRKKEEKERDL--KM-EQ-- 166
K YSLV + P++ T+++ + K E E L + +
Sbjct: 411 LHK--------YSLVEKQPKE--------STISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 167 LRKKLKTDDEV-NWID---FSKT---LREQGIDENEPVLLRRKFFFSDGNIDSHDPVQLN 219
+ K +DD + ++D +S L+ E L R F L+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVF--------------LD 499
Query: 220 LLYVQAR----DAVLDGTHPVTQDLACQLAGIQTHIQFGDYNPSKHKPPF----LDLKEF 271
+++ + + + + L QL + +I + P + + +F
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYI-------CDNDPKYERLVNAILDF 551
Query: 272 LPQSYVKVKGIEKKIF-SEHKN--HVGLSELDAKVLYTKTCRSL 312
LP+ IE+ + S++ + + L + + ++ + + +
Sbjct: 552 LPK-------IEENLICSKYTDLLRIALMA-EDEAIFEEAHKQV 587
Score = 63.7 bits (154), Expect = 7e-10
Identities = 107/791 (13%), Positives = 214/791 (27%), Gaps = 278/791 (35%)
Query: 1536 TSSLDH-FTGVVNTFVDSITKSM--QQIPDPNQPNSHYASDSVDSYVDYHTRMVGSSSL- 1591
T + + +++ F D+ + + + D P S + + +D + + G+ L
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 1592 ----DHFTGVVNTFVDSITKS-----MQQI-PDPNQPSSHYASDSVDSYVDYHTRMVGSS 1641
+V FV+ + + M I + QPS Y++ R+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-----RMYIEQRDRL---- 119
Query: 1642 KEIARISQEMMTKSWSDVKSMSGLSSQLTHQYSKLCTDCIGAVASASNPEVSGRL-CGAV 1700
++D + + + Y KL + + A N + G L G
Sbjct: 120 --------------YNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSG-- 162
Query: 1701 HDLGTACINTVTMAATCQTSGDDYTHREFADTNRVLAEKVSQVLYALQAGSRGTQACINA 1760
T C + ++ + L +
Sbjct: 163 --------KTWVALDVCL---SYKVQCKMDF----------KIFW-LNLKNC-------- 192
Query: 1761 ASTVSGIIGDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKTLVAGAASS 1820
++ ++ L + + + +DH NI K + + +
Sbjct: 193 -NSPETVLEMLQKLL-------YQIDPNWTSRSDHSSNI----KLRIHSIQAEL------ 234
Query: 1821 QEQLAVAAQNAVSTI----VQLAEVVK-FGAASLGSNNPEAQVLLINAVKDVTTALGDLI 1875
+L + + VQ A+ F N ++LL K VT L
Sbjct: 235 -RRLLKSKPYENCLLVLLNVQNAKAWNAF--------NLSCKILLTTRFKQVTDFL---- 281
Query: 1876 QATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAIAQ 1935
S T ++H + +T DE +
Sbjct: 282 ------SAATTTHISLDHHSMT----LT------------PDE----------VKSLLL- 308
Query: 1936 EIRALNSVEQVKSTASPEELVRCTKPITQATAKAVAAGNSCKQEDVIVAANMGRKAISDM 1995
+ L+ + P E++ P ++ I+A +I D
Sbjct: 309 --KYLD----CRPQDLPREVLTTN-PR------RLS----------IIAE-----SIRDG 340
Query: 1996 LAVCK-----GCSNAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQA 2050
LA C E + L+ +YR++ L + P
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPA-----EYRKMFDR-LSVF--PPS-------- 384
Query: 2051 LPPISRRIAQSLTELVSIAEQLKGSNW--MDPDDPTVIAETELLGAAASIDAAAKKLSSL 2108
I L W + D V+ +L
Sbjct: 385 ---------------AHIPTILLSLIWFDVIKSDVMVVVN-KLH---------------- 412
Query: 2109 RPRRSL---QETDETLNFDEMILEAAKSIAAATSALVKAASASQRELIDAGRMSRRPLTS 2165
+ SL Q + T++ + LE + AL R ++D + +
Sbjct: 413 --KYSLVEKQPKESTISIPSIYLELKVKLENEY-AL-------HRSIVDHYNIPKT--FD 460
Query: 2166 SDDGQWSEDDGQWSEGL------ISAARLVAAATHT-----FVEAANSVVQGAGTEEKLI 2214
SDD D + + I + F+E K+
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ------------KIR 508
Query: 2215 --SSAKQVASSTAQLLVACK------VKADPESDATHRLQSAGNAVKRATDNLVRA---- 2262
S+A + S L K DP+ + + + + + + +NL+ +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAILDFLPKIEENLICSKYTD 566
Query: 2263 -AQQAIQQDEE 2272
+ A+ ++E
Sbjct: 567 LLRIALMAEDE 577
Score = 59.9 bits (144), Expect = 1e-08
Identities = 117/764 (15%), Positives = 219/764 (28%), Gaps = 263/764 (34%)
Query: 660 HHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLPPNQQTSVITSA-TKC 718
HH+ E GE Q + +D L A + K V + S+++
Sbjct: 5 HHMDFETGEHQ-YQYKDILSVFEDAFVDN-----FDCKDV-----QDMPKSILSKEEIDH 53
Query: 719 ALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTK 778
+ + V+ T + TL +Q V+ V +E L +
Sbjct: 54 IIMSKDAVSGTLRLFWTL----LSKQ--------EEMVQKFV--------EEVLRIN--- 90
Query: 779 AAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQ--ARIL 836
L++ IK +P+ +E DRL D + +R+
Sbjct: 91 --------YKFLMSPIKTEQRQPSMMTRMYIE----QRDRL---YNDNQVFAKYNVSRL- 134
Query: 837 GQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIM---- 892
Q +L QA+ EL+ AKN+ ++ +
Sbjct: 135 -QPYLKLRQALL---------ELRP-----AKNVL------IDG-----------VLGSG 162
Query: 893 KQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEG----LLPGQ-QEIEEITEIIESTYE 947
K + V + + + L E + E+++
Sbjct: 163 KT-WVALDV--------------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 948 QIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLV 1007
QI + RS ++ + S L SK Y + L LV
Sbjct: 208 QIDPNWTSRSDHSS-NIKLRIHSIQAELRRLL---------------KSKPYENCL--LV 249
Query: 1008 -------------DIGMEIISTT----------ESRETQTKMLSSLKSVSTSSS-----K 1039
++ +I+ TT + T + +++ K
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1040 FLSTARSAALDPSASNSK----SQLSAAARNVADSINNLLNICTSALPGQKECDNAIRNI 1095
+L R L + S ++ + R+ + +N ++ CD I
Sbjct: 310 YLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---------NCDKLTTII 359
Query: 1096 QSMKPFLD--KPTE---------------PI---------NDMSYYECHNLIMEK--SKS 1127
+S L+ +P E I D+ + +++ K S
Sbjct: 360 ES---SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYS 415
Query: 1128 LGEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTA-NKGL 1186
L E K S SI + YL + + A ++ +
Sbjct: 416 LVEK------QPKESTI------------SIPSI--------YLELKVKLENEYALHRSI 449
Query: 1187 IDQTQFSRAANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPV- 1245
+D + + L P Q + I H L N V
Sbjct: 450 VDHYNIPK-----TFDSDDLI-PPYLDQYF---YSHIGHH---LKNIEHPERMTLFRMVF 497
Query: 1246 -------AK-RHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQVCTQATKPLLDA-VDS 1296
K RH +A + + S N +Q++K Y K + +C P + V++
Sbjct: 498 LDFRFLEQKIRH-DSTAWNASGSILNTLQQLK----FY--KPY-ICDN--DPKYERLVNA 547
Query: 1297 LVSFAYSPEFVNRSSHFGDSTLTAQEPILSAGEAIIESSCSMIK 1340
++ F E + T + +++ EAI E + ++
Sbjct: 548 ILDFLPKIE---ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 58.3 bits (140), Expect = 3e-08
Identities = 86/630 (13%), Positives = 171/630 (27%), Gaps = 181/630 (28%)
Query: 581 EVTDYSGVESAITS--ISHTL--PEMSKGVRMLAALTPSGDELLDAARKLCFAFT-DLLK 635
+V D +S ++ I H + + G L LL ++ F ++L+
Sbjct: 37 DVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVEEVLR 88
Query: 636 A-----AQPHSNQPRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAK-AVANTT 689
P + RQ + T + Q + + + AK V +
Sbjct: 89 INYKFLMSPIKTEQRQPSMM-------------TRMYIEQRDRLYNDNQVFAKYNV--SR 133
Query: 690 AALVLKAKSVASTLPPNQQTSV--ITSATKCALATSQLVACTKVVAPTLENPACQQQLMA 747
LK + L P + + + + K +A + Q ++
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----------LDVCLSYKVQCKM-- 180
Query: 748 AVKEVANAVEGL-VAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVE 806
+ L + CN + E + + L K ++ +H ++
Sbjct: 181 -----DFKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231
Query: 807 TAVEVMMSSSDR---LLAASGD---APEMVR----QARILGQAT---AQLIQAIKGDAEN 853
+ ++ S LL + +IL T Q+ +
Sbjct: 232 AELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTT 287
Query: 854 EPDSELQRRLLAAAKNLAEATARMVEAARQ------CASHPQDIMKQEALVTTVEELRQA 907
+ L + + ++ Q ++P+ + +++ E +R
Sbjct: 288 HISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRL----SII--AESIRDG 340
Query: 908 ATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDD----------FPRS 957
+K +++T IIES+ + + FP S
Sbjct: 341 LATWDNWK----------------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 958 TK-PIGRLQ---QELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEI 1013
P L ++ V++ + + + K+ + S+ I +E+
Sbjct: 385 AHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLEL 435
Query: 1014 -ISTTESRETQTKMLSSLKSVSTSSSK----------F-------LSTARSAA------- 1048
+ ++ T S F L
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 1049 --LDPSASNSKSQLSAAARNVADSINNLLN--------ICTSALPGQKECDNAIRNIQSM 1098
LD K + + A N + SI N L IC R + ++
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-------DNDPKYERLVNAI 548
Query: 1099 KPFLDKPTEPINDMSYYECHNLIMEKSKSL 1128
FL K E NLI K L
Sbjct: 549 LDFLPKIEE-----------NLICSKYTDL 567
Score = 52.9 bits (126), Expect = 1e-06
Identities = 69/589 (11%), Positives = 159/589 (26%), Gaps = 149/589 (25%)
Query: 488 NIAHSPTTTQQS-QVTNILTGSQKALLSTITEGHE------VITTVEKELISKAIIPDLG 540
+I S + ++ L Q+ ++ E +++ ++ E +++ +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 541 NDAASLKWKETTVDANKHNVSS-------QIAAMNAATAQVVT---MTSGEVTDYSG--- 587
+ + + V A K+NVS + A + A+ V + G SG
Sbjct: 113 IEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-G-----SGKTW 165
Query: 588 -VESAITSISHTLPEMSKGVR-MLAALTPSGDELLDAARKLCFAFTDLLKAAQPHSNQPR 645
S +M + + S + +L+ +KL + + HS+ +
Sbjct: 166 VALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 646 QNLLNAATR----VGEASHH----VLTEIGESQTNEMQD----TLLSLAKAVANTTAALV 693
+ + + + VL + ++ + LL TT
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--------TT---- 272
Query: 694 LKAKSVASTLPPNQQTSVITSATKCALATSQ----LVACTKVVAPTLENPACQQQLMAAV 749
+ K V L T + L + L+ L
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--- 328
Query: 750 KEVANAVEGLVAMC-NETCTDENLNKDLTKAAAEVTK-TLNQL-----------L----N 792
+ + + T +N + + +LN L L
Sbjct: 329 -----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 793 HIKVTTTEPAQ--------DVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQATAQLI 844
+ P +++ V V+++ + E T +
Sbjct: 384 SAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES----------TISI- 428
Query: 845 QAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAAR-QCASHPQDIMKQEA------- 896
P + L +N +V+ D++
Sbjct: 429 ----------PS--IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 897 LVTTVEELRQAATPTLRYKLF-------NK-----SQTNEFEGLLPGQQEIEEITEIIES 944
+ ++ + TL +F K + N +L Q+++
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-------- 528
Query: 945 TYEQIHTDDFPRSTKPIGRLQQELSSAATGL--SETTNEVISSVKNPAN 991
Y+ D+ P+ + + + L L S+ T+ + ++
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 39.1 bits (90), Expect = 0.025
Identities = 78/604 (12%), Positives = 156/604 (25%), Gaps = 169/604 (27%)
Query: 1789 NDTFADHRENILKTAKALVEDTKTLVAGAASSQEQLAVAAQNAVSTIVQLAEVVKFGAAS 1848
D + + + +D + + S +E + I+
Sbjct: 19 KDILSVFEDAFVDNFD--CKDVQDMPKSILSKEE---------IDHIIM----------- 56
Query: 1849 LGSNNPEAQVLLI---------NAVKD-VTTALGD----LIQATKAASGKTINDPCMNHL 1894
S + + L + V+ V L L+ K P M
Sbjct: 57 --SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ----RQPSMM-- 108
Query: 1895 KESAKVMVTNVTSLLKTVKAVEDEH-TRGTRALESTIEAIAQEIRALNSVEQVKSTASPE 1953
++ + L + + +R ++ + +AL + P
Sbjct: 109 ---TRMYIEQRDRLYNDNQVFAKYNVSR--------LQPYLKLRQALLELR-------PA 150
Query: 1954 ELVRCTKPITQATA---KAVAAGNSCKQEDVIVA-------ANMGRKAISDMLAVCKGCS 2003
+ V + K A + C V N+ C
Sbjct: 151 KNV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---------CN--- 193
Query: 2004 NAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADSKQALPPI--SRRIAQS 2061
+ E ++ L Q++ Q + S RI + L + S+
Sbjct: 194 ----SPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 2062 LTEL--VSIAEQLKGSNWMDPDDPTVIAETELLGAAASIDAAAKKLSSLRPRRSLQETDE 2119
L L V A+ + ++ T + AA SL DE
Sbjct: 247 LLVLLNVQNAKAWNA---FNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 2120 TL----NFDEMILEAAKSIAAATSALVKA-ASASQRE---------------LIDAGRMS 2159
+ + + T+ + + S R+ L S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 2160 RRPLTSSDDGQWSEDDGQWSEGL-ISAARLV---AAATHTFVEAANSVVQGAGTEEKLIS 2215
L ++ + + + I L + V VV KL
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVN------KLHK 413
Query: 2216 S---AKQVASSTAQL-LVACKVKADPESDAT-HR--LQSAGNAVKRATDNLV-------- 2260
KQ ST + + ++K E++ HR + +D+L+
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 2261 --------RAAQQAIQQDEERSLVLN-----RKMV-GGIAQEINARSEVLRIERQLEEAR 2306
+ + + R + L+ +K+ A NA +L +QL+ +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW--NASGSILNTLQQLKFYK 531
Query: 2307 GRLT 2310
+
Sbjct: 532 PYIC 535
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 82.0 bits (202), Expect = 2e-15
Identities = 103/639 (16%), Positives = 186/639 (29%), Gaps = 223/639 (34%)
Query: 1758 INAASTVSGII--GDLDTTIMFATAGTLHAEKENDTFADHRENILKTAKALVEDTKTLVA 1815
++A ST + G L+ ++ TA A + + F K L E T+ A
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQF----------NKILPEPTEGFAA 50
Query: 1816 G-AASSQEQLA------VAAQNAVSTIVQLAEVVK-----FGAASLGSNNPEAQVLLINA 1863
++ +L V++ S + Q +V+ F L N+ I+A
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-------IHA 103
Query: 1864 V-----KDVTTALG---DLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAV 1915
+ ++ T L +LI+ A P + SA L +AV
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARI-MAKRP-FDKKSNSA---------LF---RAV 149
Query: 1916 EDEHTR--------GT--------RAL--------ESTIEAIAQEIRALNSVE------- 1944
+ + + G R L I+ A+ + L
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 1945 ----QVKS-----TASPEELVRCTKPI-------TQ-----ATAK----------AVAAG 1973
+ + +P++ + PI Q TAK + G
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 1974 NSCKQEDVIVAANMGRKAISDMLAVCKGCSNAAETHELCVKTLDAGQEVAVQYRELLQTV 2033
+ + ++ A AI+ ++ E + ++
Sbjct: 270 ATGHSQGLVTAV-----AIA-----------ETDSWE--------------SFFVSVRKA 299
Query: 2034 LHILSRPGDRIADSKQALPPISRRIAQSLTELVSIAEQLKGSNWM----DPDDPTVIAET 2089
+ +L G R +A P S + S+ E S+ + M + V
Sbjct: 300 ITVLFFIGVR---CYEAYPNTS--LPPSILED-SLENNEGVPSPMLSISNLTQEQVQ--- 350
Query: 2090 ELLGAAASIDAAAKKLS-SLR----------PRRSLQETDETLNFDEMILEAAKSIAAAT 2138
+ + S A K++ SL P +SL LN + L AK A
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY----GLN---LTLRKAK----AP 399
Query: 2139 SALVKA-ASASQRELIDAGRMSRR------P-----LTSSDDGQWSEDDGQWSEGLISAA 2186
S L ++ S+R+L + S R P L + D D + +A
Sbjct: 400 SGLDQSRIPFSERKL----KFSNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFNAK 453
Query: 2187 RLVAAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKV--KADPESDATH- 2243
+ TF L + ++ ++ V + + ATH
Sbjct: 454 DIQIPVYDTF------------DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 2244 ------RLQSAGNAVKRATD----NLVRAAQQAIQQDEE 2272
G R D ++ A I D++
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 82.0 bits (202), Expect = 2e-15
Identities = 108/701 (15%), Positives = 189/701 (26%), Gaps = 289/701 (41%)
Query: 780 AAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQA 839
A + Q + T A D E ++ L+ + LG
Sbjct: 29 IASQLQ--EQFNKILPEPTEGFAADDEP------TTPAELVG------------KFLGY- 67
Query: 840 TAQLIQAIKGDAENEPDSELQRRLL---------------AAAKNLAEATARMVE----- 879
+ L++ ++ ++ L AAK L E +V+
Sbjct: 68 VSSLVE----PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 880 ----AARQCASHPQDIMKQEALVTTVEELRQAATPTLR-YKLFNKSQTNEFEGLLPGQQE 934
AR A P D AL R + +F GQ
Sbjct: 124 KNYITARIMAKRPFDKKSNSAL------FRAVGEGNAQLVAIFG------------GQGN 165
Query: 935 IEE-ITEIIE--STYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPAN 991
++ E+ + TY + +G L + +A LSE +
Sbjct: 166 TDDYFEELRDLYQTYHVL-----------VGDL---IKFSAETLSELIRTTLD------- 204
Query: 992 LPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVS------TSSSKFLSTAR 1045
+ K ++ L +I +E + + + +LS +S + ++ TA+
Sbjct: 205 ---AEKVFTQGL----NI-LEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAK 254
Query: 1046 SAALDPSASNSKSQ---------LSAAARNVADSINNLLNICTSALP-----GQKECDNA 1091
P S + ++A A DS + A+ G C
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-VRC--- 310
Query: 1092 IRNIQSMKPFLDKPTEPINDMSYYECHNLIMEKSKSLGEG-MTGMANHAKHSEYDAFGKC 1150
P P I+E S EG + M
Sbjct: 311 ----YEAYPNTSLPPS-------------ILEDSLENNEGVPSPML-------------- 339
Query: 1151 VNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQFSRAANAIKHACNTLTNPS 1210
SI L + Q +++T N H P+
Sbjct: 340 ------SISNLTQEQVQD-----------------YVNKT------N--SHL------PA 362
Query: 1211 TTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRHFVQSAKDVANSTANL------ 1264
Q +I SL N ++ V V+ +L
Sbjct: 363 GKQVEI------------SLVN-------------GAKNLV-----VSGPPQSLYGLNLT 392
Query: 1265 VQEIKA---LDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYS---PEFVNR----SSHFG 1314
+++ KA LD Q+ P +S +F NR +S F
Sbjct: 393 LRKAKAPSGLD------------QSRIP------------FSERKLKFSNRFLPVASPFH 428
Query: 1315 DSTLT-AQEPILSAGEAIIESSCSMIKTAKSLAVSPKDRPTWKLLADHSKQVSDSIKRLV 1373
L A + I + +++++ S AK + + D L S +S+ I +
Sbjct: 429 SHLLVPASDLIN---KDLVKNNVSF--NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 1374 ---------------TSIRDVAPGQKECDQAIEAISSRLRE 1399
T I D PG + ++ R ++
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGG---ASGLGVLTHRNKD 521
Score = 74.3 bits (182), Expect = 5e-13
Identities = 115/655 (17%), Positives = 197/655 (30%), Gaps = 234/655 (35%)
Query: 910 PTLRYKLFNKSQ-TNEFEGLLPGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQEL 968
PT + F SQ +F +LP E T E DD P + EL
Sbjct: 23 PTASF--FIASQLQEQFNKILP------------EPT-EGFAADDEPTT-------PAEL 60
Query: 969 SSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDI-------GMEIIS-----T 1016
L ++ V P+ Q+ L + G +I +
Sbjct: 61 --VGKFLGYVSSLV---------EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 1017 TESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLN 1076
E+ T K +K+ ++ TAR A P S S L A + L+
Sbjct: 110 QENDTTLVKTKELIKN-------YI-TARIMAKRPFDKKSNSALFRAVG---EGNAQLVA 158
Query: 1077 ICTSALPGQ-------KECDNAIRNIQSM-KPFLDKPTEPINDMSYYECHNLIMEKSKSL 1128
I GQ +E +R++ + +LI +++L
Sbjct: 159 IF----GGQGNTDDYFEE----LRDLYQTYHVLVG---------------DLIKFSAETL 195
Query: 1129 GEGMTGMANHAKHSEYDAFGKCVNNVSDSICGLCEGVAQA---SYL--VAISEATSNTAN 1183
E + +E F + +N I E + YL + IS
Sbjct: 196 SE----LIRTTLDAEK-VFTQGLN-----ILEWLENPSNTPDKDYLLSIPIS-------- 237
Query: 1184 KGLIDQTQFSRAANAIKH---ACNTL-TNPSTTQQQILTAATVIAKHTSSLCNACRIASS 1239
LI Q + H L P + L AT H+ L A IA +
Sbjct: 238 CPLIGVIQLA-------HYVVTAKLLGFTPGEL-RSYLKGATG---HSQGLVTAVAIAET 286
Query: 1240 KTTNPVAKRHFVQSAKDVANSTANLVQEIKALDMNYNEKNHQV---CTQATKPLLDAVDS 1296
+ F S + KA+ + + + C +A P
Sbjct: 287 DS-----WESFFVSVR-------------KAITVLF-----FIGVRCYEAY-PNT----- 317
Query: 1297 LVSFAYSPEFVNRSSHFGDSTLTAQEPILS-AG------EAIIESSCSMIKTAKSLAVSP 1349
+ P + S + + P+LS + + + + S + K + +S
Sbjct: 318 ----SLPPSILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS- 369
Query: 1350 KDRPTWKLLADHSKQ--VS---DSIKRLVTSIRDV-APGQKECDQA-IE------AISSR 1396
L + +K VS S+ L ++R AP DQ+ I S+R
Sbjct: 370 --------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPFSERKLKFSNR 419
Query: 1397 LRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFS 1456
L V+ P ++S L A++ I L + + A+ I
Sbjct: 420 F--------LPVA---SP-FHSHLL-------VPASDLINKDLV--KNNVSFNAKDIQIP 458
Query: 1457 VNQLVTSFDSL-ASDSMNVASNLIHSKQQMTLLDQ--TKTV---AECLLQVLHLI 1505
V +D+ SD ++ ++ ++D V + H++
Sbjct: 459 V------YDTFDGSDLRVLSGSISER-----IVDCIIRLPVKWETTTQFKATHIL 502
Score = 70.1 bits (171), Expect = 1e-11
Identities = 102/675 (15%), Positives = 193/675 (28%), Gaps = 223/675 (33%)
Query: 1582 HTRMVGSSSLDHFTGVV--NTFVDSITKSMQQIPDPNQPSSHYASDSVDSYVDYHTRMVG 1639
H +V ++ F F + + + ++P++ ++ V ++ Y
Sbjct: 18 HVLLV-PTAS-FFIASQLQEQFNKILPEPTEGFAADDEPTT--PAELVGKFLGY------ 67
Query: 1640 SSKEIARISQEMMTKSWSDVKSMSGLSSQLTH---QYSKLCTDCIGAVASASNPEVSGRL 1696
++ + + + V L+ LT Y L + I A+A+ E L
Sbjct: 68 ----VSSLVEPSKVGQFDQV-----LNLCLTEFENCY--LEGNDIHALAAKLLQENDTTL 116
Query: 1697 CGAVHDLGTACINTVTMAATCQTSGDDYTHREFADTNRVLAEKVSQVLYALQAGSRGTQA 1756
+L I A + + + + R + E +Q L A+ G Q
Sbjct: 117 -VKTKEL----IKNYITA--RIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGG----QG 164
Query: 1757 CINAA--------STVSGIIGDLDTTIMFATAGTLH--AEKENDTFADHRENILKTAKAL 1806
+ T ++GDL I F+ A TL D + +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDL---IKFS-AETLSELIRTTLDAEKVFTQGL------- 213
Query: 1807 VEDTKTLVAGAAS--SQEQLAVAAQNAVS----TIVQLAEVVKFGAASLGSNNPEAQVLL 1860
+ + ++ ++ L +S ++QLA V A LG P L
Sbjct: 214 --NILEWLENPSNTPDKDYLLSI---PISCPLIGVIQLAHYVVT-AKLLGF-TPGE---L 263
Query: 1861 INAVKDVTTALGDLIQATKAASGKTINDPCMNHLKESAKVMVTNVTSLLKTVKAVEDEHT 1920
+ +K T L+ A A + S + +T + +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWES-----FFVSVRKAITVLFFI------------ 306
Query: 1921 RGTRALEST-IEAIAQEIRALNSVEQVKSTASPEELVRCTKPITQATAKAVAAGNSCKQE 1979
G R E+ ++ I +S+E + SP
Sbjct: 307 -GVRCYEAYPNTSLPPSILE-DSLENNEGVPSP--------------------------- 337
Query: 1980 DVIVAANMGRKAISDMLAVCKGCSNAA-ETH-ELCVKTLDAGQEVAV-------QY---- 2026
ML++ + + + L AG++V +
Sbjct: 338 ---------------MLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 2027 --REL--LQTVLHILSRPGDRIADSKQALPPISRRIAQSLTELVSIAEQLKGSNWMDPDD 2082
+ L L L P + Q+ P S R +LK SN P
Sbjct: 382 PPQSLYGLNLTLRKAKAP----SGLDQSRIPFSER-------------KLKFSNRFLP-- 422
Query: 2083 PTVIAE---TELLGAAASI---DAAAKKL----SSLR-PRRS------LQETDETLNFD- 2124
+A + LL A+ + D + ++ P L+ +++
Sbjct: 423 ---VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 2125 -EMILEAAKSIAAATSALV---KAASASQRELIDAGRMSRRPLTSSDDGQWSED--DGQW 2178
+ I+ V ++D G P +S G + DG
Sbjct: 480 VDCIIRLP----------VKWETTTQFKATHILDFG-----PGGASGLGVLTHRNKDGTG 524
Query: 2179 SEGLISAARLVAAAT 2193
R++ A T
Sbjct: 525 -------VRVIVAGT 532
Score = 66.6 bits (162), Expect = 1e-10
Identities = 85/494 (17%), Positives = 149/494 (30%), Gaps = 177/494 (35%)
Query: 567 MNAATAQVVTMTSGEVTDYSGVESAITSISHTLPEMSKGVRMLAALTPSGDELLDAARKL 626
M+A + + +T++ G S+ H L L P+ A +L
Sbjct: 1 MDAYSTRPLTLSHG-------------SLEHVL------------LVPTA--SFFIASQL 33
Query: 627 CFAFTDLLKAAQP---HSNQPRQNL-LNAATRVGEASHHVLTEIGESQTNEMQDTLLSLA 682
F +L ++P L VG+ +V + + S+ + L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAEL-----VGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 683 KAVANTTAALVLKAK---SVASTLPPNQQTSVITSAT--KCALATSQLVACTKVVAPTLE 737
N L+ ++A+ L T+++ + K + K
Sbjct: 89 TEFENC----YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR---IMAKRPFDKKS 141
Query: 738 NPACQQQLMAAVKEVANAVEGLVAMC-----NETCTDE---------NLNKDLTKAAAEV 783
N A L AV E NA LVA+ + +E L DL K +AE
Sbjct: 142 NSA----LFRAVGE-GNA--QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE- 193
Query: 784 TKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEM-------------- 829
TL++L+ T + + + ++ L + P+
Sbjct: 194 --TLSELIRT----TLDAEKVFTQGLNIL-----EWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 830 VRQ-------ARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEAAR 882
V Q A++LG +L +KG ++ L A A
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKG-------------ATGHSQGLVTAVA------- 282
Query: 883 QCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITEII 942
I A + E + + LF F G + +
Sbjct: 283 --------I----AETDSWESFFVSVRKAITV-LF-------FIG-VRCYEA-------- 313
Query: 943 ESTYEQIHTDDFPRSTKPIGRLQQELSS---------AATGLSETTNEVISSVK--NPAN 991
+P ++ P L+ L + + + L++ +V V N ++
Sbjct: 314 -----------YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTN-SH 359
Query: 992 LPASSKQYSHSLQN 1005
LPA KQ SL N
Sbjct: 360 LPA-GKQVEISLVN 372
Score = 59.7 bits (144), Expect = 1e-08
Identities = 87/584 (14%), Positives = 162/584 (27%), Gaps = 208/584 (35%)
Query: 489 IAHSPTTTQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGND----AA 544
++ ++ Q +L L+ E + GND AA
Sbjct: 68 VSSLVEPSKVGQFDQVL----NLCLTEF----------ENCYLE-------GNDIHALAA 106
Query: 545 SLKWKETTVDANKHNVSSQIAAMNAATAQVVTMTSGEVTDYSGVESAITSISHTLPEMSK 604
L + T + +++ IT+ K
Sbjct: 107 KLLQENDTTLVKTKEL---------------------------IKNYITARIMAKRPFDK 139
Query: 605 GVRMLAALTPSGDELLDAARK------LCFA--------FTDLLKAAQPHSNQPRQNLLN 650
S L A + F F +L ++L
Sbjct: 140 ---------KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL------------RDL-- 176
Query: 651 AATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAAL-----VLKAKSVASTLPP 705
+ H ++ ++ +TL L + + +L+ S P
Sbjct: 177 -----YQTYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 706 NQQTSVITSAT-KCAL-ATSQLVACTKVVAPTLE-NPACQQQLMAAVKEVANAVEGLV-- 760
+ S C L QL A V A L P +L + +K +GLV
Sbjct: 228 ---KDYLLSIPISCPLIGVIQL-AHYVVTAKLLGFTPG---ELRSYLKGATGHSQGLVTA 280
Query: 761 ---AMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSD 817
A + + E+ + KA +L I V E + S
Sbjct: 281 VAIAETD---SWESFFVSVRKAI--------TVLFFIGVRCYEAYPNT--------SLPP 321
Query: 818 RLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATA-- 875
+L S + E G + L +I ++Q + +L
Sbjct: 322 SILEDSLENNE--------GVPSPML--SISN----LTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 876 -RMVEAARQ--CASHPQDIMKQEALVTTVEELR------QAATP-TLRYKLFNKSQTNEF 925
+V A+ + PQ + L T+ + + Q+ P + R F +N F
Sbjct: 368 ISLVNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLDQSRIPFSERKLKF----SNRF 420
Query: 926 EGLLPGQQEIEEIT-----EIIESTYEQIHTDDFPRSTK--------PI-----GRLQQE 967
LP + ++ + I+ D + P+ G +
Sbjct: 421 ---LP-------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 968 LSSAATGLSETTNEVISSVKNPANLPASSK-QYSHSLQNLVDIG 1010
LS +SE + I ++ P +++ + +H ++D G
Sbjct: 471 LS---GSISERIVDCI--IRLPVKWETTTQFKATH----ILDFG 505
Score = 57.8 bits (139), Expect = 5e-08
Identities = 120/663 (18%), Positives = 207/663 (31%), Gaps = 242/663 (36%)
Query: 165 EQLRKKLKTDDEVNWIDFSKTL---REQGIDENEPV----LLRRKF--FFSD----GNID 211
QL++ F+K L E ++EP L+ + F + S +
Sbjct: 31 SQLQE-----------QFNKILPEPTEGFAADDEPTTPAELVGK-FLGYVSSLVEPSKVG 78
Query: 212 SHDPVQLNLLYVQARDAVLDGT--HPVTQDLACQLAGIQTHIQFGDYNPSKHKPPFLDLK 269
D V LNL + + L+G H LA +L ++ + K
Sbjct: 79 QFDQV-LNLCLTEFENCYLEGNDIH----ALAAKL-------------LQENDTTLVKTK 120
Query: 270 EFLPQSYVKVKGIEKKIFSEHKNHVGLSELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGK 329
E + ++Y+ + + K+ F + N S L R++ + G+
Sbjct: 121 ELI-KNYITARIMAKRPFDKKSN----SAL---------FRAVGEGNAQLVAI---FGGQ 163
Query: 330 NKLVPRLLGVTKDSVLRLDE-RTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQ 388
G T D +E R ++ +T+ V D +S
Sbjct: 164 --------GNTDD---YFEELR--DLYQTYH------------VLVGDLIKFS------- 191
Query: 389 TTEAEQIQQLIAGYIDIILKKKMSKDHFGIEG--------DEGSTMVED-----SVS-PL 434
AE + +LI +D ++ F +G + +T +D +S PL
Sbjct: 192 ---AETLSELIRTTLD-------AEKVFT-QGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 435 KATIF--Q--HESN--RVGKVNTESVAKPAVMRAGNDGARPYGVGHVGSAQYTTVSGQIN 488
I Q H ++ P +R+ GA GH V+
Sbjct: 241 ---IGVIQLAHYVVTAKLLGFT------PGELRSYLKGA----TGHSQG----LVTAVA- 282
Query: 489 IAHSPTTTQQSQVTNILTGSQKAL--LSTI-TEGHEV--ITTVEKELISKAIIPDLGNDA 543
IA + + + +KA+ L I +E T++ ++ ++ +
Sbjct: 283 IAETDS------WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGV 334
Query: 544 AS-------LKWK--ETTVDA-NKHNVSSQ---IAAMNAATAQVVTMTSGEVTDYSGVES 590
S L + + V+ N H + + I+ +N A VV+ G G+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNL 391
Query: 591 AITSISHTLPEMSKGVRMLAALTPSGDELLD------AARKLCFA--F--------TDLL 634
+R A PSG LD + RKL F+ F + LL
Sbjct: 392 T--------------LRKAKA--PSG---LDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 635 KAAQPHSNQ--PRQNLLNAATRVGEASHHVLTEIGESQTNEMQDTLLSLAKAVANTTAAL 692
A N+ + N+ A + + T G D L + + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGS-------D----LRVLSGSISERI 479
Query: 693 VLKAKSVASTLPPNQQTSVITSATKC----ALATSQLVACTK----------VVAPTLE- 737
V LP +T+ AT S L T +VA TL+
Sbjct: 480 V----DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 738 NPA 740
NP
Sbjct: 536 NPD 538
Score = 55.8 bits (134), Expect = 2e-07
Identities = 81/479 (16%), Positives = 151/479 (31%), Gaps = 171/479 (35%)
Query: 28 YDACRIIRDKISE---------ANFGEAKDYGLFLSDGDVKKGVWLEPGRNLEYYILRNG 78
A + + + G A+ +F G G G +Y+
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---G----G----QGNTDDYF----- 170
Query: 79 DELE-----YRRKMRTLKVRMLDGTLKTLL-------------VD--------DSQPVAN 112
+EL Y + L ++ TL L+ ++ + P +
Sbjct: 171 EELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 113 LMV---VICTKIGITNHDEYSLVRE----NPEDEVENKPNFGTLTLKRKK--------EE 157
++ + C IG+ Y + + P E + T + E
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHSQGLVTAVAIAET 286
Query: 158 KERDLKMEQLRKKLKTDDEVNWI-----------DFSKTLREQGIDENE----PVL---- 198
+ +RK + + +I ++ E ++ NE P+L
Sbjct: 287 DSWESFFVSVRKAITV---LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 199 LRRKFFFSDGNID---SHDPV--QLNL-LYVQARDAVLDGTHPVT-QDLACQLAGI---- 247
L ++ ++ SH P Q+ + L A++ V+ G P + L L
Sbjct: 344 LTQEQVQDY--VNKTNSHLPAGKQVEISLVNGAKNLVVSG-PPQSLYGLNLTLRKAKAPS 400
Query: 248 ---QTHIQFGDYNPSKHKPPFLDLKEFLP------QSYVKVKGIEKKIFSE-HKNHVGLS 297
Q+ I F S+ K F FLP + I + KN+V
Sbjct: 401 GLDQSRIPF-----SERKLKF--SNRFLPVASPFHSHL--LVPASDLINKDLVKNNV--- 448
Query: 298 ELDAKVLYTKTCRSLPTYGVTFFLVKEKMKGKN------KLVPRLLGVTKDSVLRL--DE 349
+AK + +P Y TF G + + R++ D ++RL
Sbjct: 449 SFNAKDI------QIPVYD-TF-------DGSDLRVLSGSISERIV----DCIIRLPVK- 489
Query: 350 RTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNYYSVQTTEAEQ---IQQLIAGYIDI 405
W TT + ++++ LDFG + V T + ++ ++AG +DI
Sbjct: 490 --------WETTTQFK---ATHI--LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 50.8 bits (121), Expect = 6e-06
Identities = 42/287 (14%), Positives = 83/287 (28%), Gaps = 101/287 (35%)
Query: 1242 TNPVAK-------RHFVQ----SAKD-VANSTANLV-----QEIKALDMNYNEKNHQVCT 1284
T+ A+ HF S D V N+ NL ++ K + NY+ +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 1285 QA---TKPLLDAVD---SLVSFAYSPEFVNRSSHFGDSTLT--AQEPILSAGEAIIESSC 1336
T+ + ++ + +F S + G + T Q P A+
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTF-RSEK--------GLLSATQFTQ-P------ALTLMEK 1741
Query: 1337 SMIKTAKSLAVSPKDRPTWKLLADHS-------------KQVSDSIKRLV---------- 1373
+ + KS + P D A HS + ++ +V
Sbjct: 1742 AAFEDLKSKGLIPAD----ATFAGHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQVA 1796
Query: 1374 ----------TSIRDVAPG-------QKECDQAIEAISSRLRELDEVAMLAVSQGQIPHY 1416
+ + PG Q+ +E + R L E+ +Y
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV----------NY 1846
Query: 1417 NSASLQ--MSAEKTE-QAANEILTRLEPLRQAAKYQAESIAFSVNQL 1460
N + Q + + +L ++ Q + S+ ++
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIK--LQKIDIIELQKSLSLEEV 1891
Score = 50.8 bits (121), Expect = 7e-06
Identities = 73/394 (18%), Positives = 127/394 (32%), Gaps = 121/394 (30%)
Query: 2004 NAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSRPGDRIADS-KQALPPISRRIAQ-- 2060
+A T L TL G ++++ L+ T + ++ + + LP + A
Sbjct: 2 DAYSTRPL---TLSHG---SLEHVLLVPTASFFI---ASQLQEQFNKILPEPTEGFAADD 52
Query: 2061 ---SLTELVS-----IAEQLKGSNWMDPDDPTVIA------ETELLGAAASIDAAAKKLS 2106
+ ELV ++ ++ S D V+ E L I A A KL
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGN-DIHALAAKL- 108
Query: 2107 SLRPRRSLQETDETLNFDEMILEA---AKSIA------AATSALVKAASASQRELIDA-- 2155
LQE D TL + +++ A+ +A + SAL +A +L+ A
Sbjct: 109 -------LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIF 160
Query: 2156 GRMSRRPLTSSDDGQWSEDDGQWSE---------GLISAARLVAAATHTFVEAANSVV-- 2204
G GQ + DD + E L+ L+ + T E + +
Sbjct: 161 G------------GQGNTDDY-FEELRDLYQTYHVLVGD--LIKFSAETLSELIRTTLDA 205
Query: 2205 -----QG------------AGTEEKLISSAKQVA------SSTAQLLVACKVKADPESDA 2241
QG ++ L+S ++ A +V K+ +
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 2242 THRLQSAGNAVKRATDNLVRAAQQAIQQ-DEERSLVLNRKMVGGIAQEINARSEVLRIER 2300
L+ A + LV A AI + D S ++ + + I R
Sbjct: 264 RSYLKGATGHSQ----GLVTAV--AIAETDSWESFFVSVRKAITVLFFIGVRC------- 310
Query: 2301 QLEEARGRLT-AIRQAKYKLKGGDGSASDTEPEM 2333
EA + + L+ +G S P M
Sbjct: 311 Y--EAYPNTSLPPSILEDSLENNEGVPS---P-M 338
Score = 50.0 bits (119), Expect = 1e-05
Identities = 57/291 (19%), Positives = 92/291 (31%), Gaps = 114/291 (39%)
Query: 1061 SAAARNV---AD---------SI-----NNLLNICTSALPGQKECDNAIR-NIQSM---- 1098
S AA++V AD SI NN +N+ T G+K IR N +M
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TIHFGGEK--GKRIRENYSAMIFET 1695
Query: 1099 --------KPFLDKPTEPINDMSYYECHNL----------IMEKSKSLGEGM--TGMANH 1138
+ + E ++ L + K+ E + G+
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 1139 ----AKHS--EYDAFGKCVNNVSDSICGLCEGVAQASYLVAISEATSNTANKGLIDQTQF 1192
A HS EY A L + A + +I ++ F
Sbjct: 1756 DATFAGHSLGEYAA--------------L---ASLADVM-SIESLVE------VV----F 1787
Query: 1193 SR---AANAIKHACNTLTNPSTTQQQILTAATVIAKHTSSLCNACRIASSKTTNPVAKRH 1249
R A+ +N +IA N R+A+S + + ++
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYG-----------MIA------INPGRVAASFSQEAL--QY 1828
Query: 1250 FVQSAKDVANSTANLVQEIKALDMNYNEKNHQ-VCTQATKPLLDAVDSLVS 1299
V+ V T LV EI NYN +N Q V + A+D++ +
Sbjct: 1829 VVER---VGKRTGWLV-EI-V---NYNVENQQYVAAGDLR----ALDTVTN 1867
Score = 49.7 bits (118), Expect = 1e-05
Identities = 43/254 (16%), Positives = 71/254 (27%), Gaps = 97/254 (38%)
Query: 2019 GQEVAVQYRELLQTVLHILSRPGDRIADSKQALPPISRRIAQ----------SLTE---- 2064
G+ + Y + I D +++ I+ S T+
Sbjct: 1681 GKRIRENYSAM------IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 2065 ---LVSIA--EQLKGSNWMDPDDPTVI--------AETELLGAAA---SIDAAAKKLSSL 2108
L+ A E LK S + P D T A L + A SI++ + + +
Sbjct: 1735 ALTLMEKAAFEDLK-SKGLIPADATFAGHSLGEYAA----LASLADVMSIESLVE-V--V 1786
Query: 2109 RPR-RSLQETDETLNFDEMILEAAKSIAAATSALVKAASASQRELIDAGRMSRRPLTSSD 2167
R ++Q DE+ + + A I+ GR++ S
Sbjct: 1787 FYRGMTMQVAVPR---DEL-GRSNYGMIA----------------INPGRVA----ASFS 1822
Query: 2168 DGQWSEDDGQWSEGLISAARLVAAATHTFVEAAN-------SVVQGAGTEEKLISSAKQV 2220
E L V T VE N V AG L
Sbjct: 1823 Q-----------EALQYVVERVGKRTGWLVEIVNYNVENQQYVA--AGDLRAL-----DT 1864
Query: 2221 ASSTAQLLVACKVK 2234
+ +L K++
Sbjct: 1865 VT---NVLNFIKLQ 1875
Score = 49.7 bits (118), Expect = 2e-05
Identities = 47/328 (14%), Positives = 92/328 (28%), Gaps = 136/328 (41%)
Query: 1838 LAEVVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQATKAASGKTINDPCMNHLKES 1897
+ ++V NNP ++T G GK I + + E+
Sbjct: 1661 ILDIVI--------NNP----------VNLTIHFG-------GEKGKRIRENYSAMIFET 1695
Query: 1898 AKVMVTNVTSLLKTVKAVEDEHTRG------------TR----ALESTIE-AIAQEIRAL 1940
+ K + +EH+ T+ AL + +E A +++++
Sbjct: 1696 IVDGKLKTEKIFKEI----NEHSTSYTFRSEKGLLSATQFTQPAL-TLMEKAAFEDLKSK 1750
Query: 1941 NSVEQVKSTA-----------------SPEELVRCTKPIT----QATAKAVAAGNSCKQE 1979
+ + A S E LV + AV +
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVE----VVFYRGMTMQVAVPRDELGRSN 1806
Query: 1980 DVIVAANMGRKAISDMLAVCKGCSNAAETHELCVKTLDAGQEVAVQYRELLQTVLHILSR 2039
++A N GR V S A+QY
Sbjct: 1807 YGMIAINPGR--------VAASFSQE-----------------ALQY------------- 1828
Query: 2040 PGDRIADSKQALPPISRRIAQSLTELVSIAEQLKGSNWMDPDDPTVIAETELLGAAASID 2099
+ R+ + LV I N+ + V A G ++D
Sbjct: 1829 --------------VVERVGKRTGWLVEIV------NYNVENQQYVAA-----GDLRALD 1863
Query: 2100 AAAKKLSSLRPRR-SLQETDETLNFDEM 2126
L+ ++ ++ + E ++L+ +E+
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 47.0 bits (111), Expect = 1e-04
Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 96/286 (33%)
Query: 346 RLDERTKE--------IMKTWPLTTVRRWGASSNVFTLDFGDYSDNY----YSVQTTEAE 393
R D K+ I+ P+ T+ FG YS E
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVN-----------LTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 394 QIQQLIAGYIDIILKKKMSKDHFGIEGDEGSTMVEDSVSPLKAT------IFQHESNRVG 447
+L I + + + F ++G L AT +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTF--RSEKGL---------LSATQFTQPALT-------- 1737
Query: 448 KVNTESVAKPAVMRAGNDGARPYGV---GH-VGSAQYT---TVSGQINIAHSPTT----- 495
A +++ G P GH +G +Y +++ ++I +
Sbjct: 1738 ---LMEKAAFEDLKS--KGLIPADATFAGHSLG--EYAALASLADVMSIE---SLVEVVF 1787
Query: 496 ----TQQSQVTNILTGSQKALLSTITEGHEVITTVEKELISKAIIPDLGNDAASLKWKET 551
T Q V G + I G V + +E + + ++ +G L
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEAL-QYVVERVGKRTGWL----- 1840
Query: 552 TVDANKHNVSSQIAAMNAATAQVVTMTSGEVTDYSGVESAITSISH 597
V +I N Q V +G++ +++ ++
Sbjct: 1841 --------V--EIVNYNVENQQYV--AAGDL---RALDTVTNVLNF 1871
Score = 43.9 bits (103), Expect = 8e-04
Identities = 63/386 (16%), Positives = 111/386 (28%), Gaps = 150/386 (38%)
Query: 450 NTESVAKPAVMRAGNDGARPYGVGHVGSAQYTTVSGQINIAHSPTTTQQSQVTNILTGSQ 509
T A+ RA N YG S I + ++P +T I G +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGF----SIL------DI-VINNPVN-----LT-IHFGGE 1679
Query: 510 KALLSTITEGHEVI---TTVEKELISKAIIPDLGNDAASLKWKETTVDANKHNVSSQIAA 566
K I E + + T V+ +L ++ I ++ + S + S+
Sbjct: 1680 KGK--RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF------------RSEKGL 1725
Query: 567 MNAAT--AQVVTMTSGEVTDYSGVESAITSISHTLPEMSKGVRMLAALTPSGDELLDAAR 624
++A T Q A+T + L G DA
Sbjct: 1726 LSA-TQFTQP----------------ALTLME---------KAAFEDLKSKGLIPADAT- 1758
Query: 625 KLCFAFTDLLKAAQPHSNQPRQNLLNAATRVGE--ASHHVLTEIGESQTNEMQDTLLSLA 682
FA HS +GE A L + + +S+
Sbjct: 1759 ---FA---------GHS-------------LGEYAA----LASLADV---------MSIE 1780
Query: 683 KAVANTTAALVLK-AKSVASTLPPNQQTSVITSATKCALATSQLVACTKVVAPTLENPAC 741
V +V ++ +P ++ A+ + VA +
Sbjct: 1781 SLVE-----VVFYRGMTMQVAVPRDELGRSNYGM--IAINPGR-------VAASF----S 1822
Query: 742 QQQLMAAVKEVANAVEGLVAMCNETCTDE--NLNKDL-------TKAAAEVTKTLNQLLN 792
Q+ L V+ V LV E N N + A + T+ +LN
Sbjct: 1823 QEALQYVVERVGKRTGWLV---------EIVNYNVENQQYVAAGDLRALD---TVTNVLN 1870
Query: 793 HIKVTTTEPAQDVETA-VEVMMSSSD 817
IK+ Q ++ ++ +S +
Sbjct: 1871 FIKL------QKIDIIELQKSLSLEE 1890
Score = 42.0 bits (98), Expect = 0.003
Identities = 44/275 (16%), Positives = 86/275 (31%), Gaps = 93/275 (33%)
Query: 1410 QGQIPHYNSASLQMSAE--KTEQAANEILTRLEPLRQAAKYQAESIAFSVNQLVTSFDSL 1467
QG S M + KT +AA ++ R A + ++ FS+ +V +
Sbjct: 1624 QG------SQEQGMGMDLYKTSKAAQDVWNR------ADNHFKDTYGFSILDIVIN---- 1667
Query: 1468 ASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQVLHLIKEAG--GNPDAVNIHPDLDESI 1525
N + IH + + K + E +I E G I +++E
Sbjct: 1668 -----NPVNLTIHFGGE-----KGKRIRE---NYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 1526 -----EATKEALSDITSSLDHFTGVVNT----FVDSIT-----KSMQQIPDPNQPNSHYA 1571
+ K L T T + KS IP ++ +A
Sbjct: 1715 TSYTFRSEKGLL-SATQ---------FTQPALTLMEKAAFEDLKSKGLIP----ADATFA 1760
Query: 1572 SDSVDSYVDYHTRMVGSSSLDHFTGVVNTFVDSIT------KSMQQ-IP----------- 1613
S+ Y ++L V+ + + +MQ +P
Sbjct: 1761 GHSLGEY----------AALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 1614 ---DPNQPSSHYASDSVDSYVDYHTRMVGSSKEIA 1645
+P + ++ ++ +++ V+ + G EI
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
>1aep_A Apolipophorin III; lipoprotein; 2.70A {Locusta migratoria} SCOP:
a.63.1.1
Length = 161
Score = 74.3 bits (181), Expect = 4e-15
Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 8/161 (4%)
Query: 1380 APGQKECDQAIEAISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRL 1439
A G +A++ ++ + + +P + A ++ + AN T++
Sbjct: 1 AAGHVNIAEAVQQLNHTIVNAAHELHETLG---LPTPDEALNLLT-----EQANAFKTKI 52
Query: 1440 EPLRQAAKYQAESIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLL 1499
+ + K +AE SV + + +F ++S++ A+ ++ + Q+ L T
Sbjct: 53 AEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGHQW 112
Query: 1500 QVLHLIKEAGGNPDAVNIHPDLDESIEATKEALSDITSSLD 1540
Q + +A + L E+ E TKEA +++ +S+
Sbjct: 113 QDIATKTQASAQEAWAPVQSALQEAAEKTKEAAANLQNSIQ 153
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide
from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK,
structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Length = 153
Score = 74.1 bits (181), Expect = 4e-15
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 311 SLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS 370
S+P T F V +L ++ +T+ ++ R + + WP +RR+G S
Sbjct: 12 SVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVR--WPYLCLRRYGYDS 69
Query: 371 NVFTLDFG---DYSDNYYSVQTTEAEQIQQLIAGYI 403
N+F+ + G ++ + + AE+I L+ +
Sbjct: 70 NLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLM 105
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB
domain, HALK, structural genomics, signa protein,
NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Length = 146
Score = 72.9 bits (178), Expect = 8e-15
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 311 SLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS 370
S+P T F V +L ++ +T+ ++ R + + WP +RR+G S
Sbjct: 12 SVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVR--WPYLCLRRYGYDS 69
Query: 371 NVFTLDFG---DYSDNYYSVQTTEAEQIQQLIAGYI 403
N+F+ + G ++ + + AE+I L+ +
Sbjct: 70 NLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLM 105
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 113
Score = 70.9 bits (173), Expect = 2e-14
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 334 PRLLGVTKDSV-LRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFG---DYSDNYYSVQT 389
L + ++ L + WP +RR+G F+ + G + + +T
Sbjct: 29 SYTLRAGESALELWGGPEPGTQLYDWPYRFLRRFGRDKVTFSFEAGRRCVSGEGNFEFET 88
Query: 390 TEAEQIQQLIAGYI 403
+ +I + I
Sbjct: 89 RQGNEIFLALEEAI 102
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3,
latch domain, structural protein; 2.20A {Mus musculus}
Length = 50
Score = 65.2 bits (158), Expect = 3e-13
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 2281 MVGGIAQEINARSEVLRIERQLEEARGRLTAIRQAKYKLKGGD 2323
MVGGIAQ I A+ E+LR ER+LEEAR +L IRQ +YK +
Sbjct: 3 MVGGIAQIIAAQEEMLRKERELEEARKKLAQIRQQQYKFLPSE 45
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB
domain, phosphorylation, adaptor protein; HET: PGE;
1.60A {Homo sapiens}
Length = 107
Score = 65.5 bits (159), Expect = 1e-12
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 336 LLGVTKDSV----LRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDN---YYSVQ 388
+L V + + + + E + +WP T +RR+G +F+ + G + ++ Q
Sbjct: 26 VLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQ 85
Query: 389 TTEAEQIQQLIAGYI 403
T + I Q + I
Sbjct: 86 TAQGNDIFQAVETAI 100
>3s90_C Talin-1, metavinculin; four-helix bundle, cell adhesion, focal
adhesion; 1.97A {Mus musculus}
Length = 40
Score = 58.3 bits (140), Expect = 6e-11
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 1237 ASSKTTNPVAKRHFVQSAKDVANSTANLVQEIKAL 1271
AS++T NP AKR FVQSAK+VANSTANLV+ IKAL
Sbjct: 6 ASARTANPTAKRQFVQSAKEVANSTANLVKTIKAL 40
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus}
SCOP: b.55.1.2 PDB: 1uef_A*
Length = 127
Score = 59.4 bits (143), Expect = 2e-10
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 334 PRLLGVTKDSV----LRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNY---YS 386
+L V + + L + E + WP T +RR+G +F+ + G + ++
Sbjct: 26 SYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFT 85
Query: 387 VQTTEAEQIQQLIAGYI 403
QT++ I Q + I
Sbjct: 86 FQTSQGNDIFQAVEAAI 102
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation,
cell adhesion; NMR {Homo sapiens}
Length = 112
Score = 53.1 bits (127), Expect = 3e-08
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 2 ATLSLKICIVDRNVTKTMQFDPSTSVYDACRIIRDKISEANFGEAKDYGLFLSDGDVKKG 61
T L + + D N T++ + + +K+ D+ L+ KK
Sbjct: 23 GTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDW--SDHALWWE----KKR 76
Query: 62 VWLEPGRN-LEYYILRNGDELEYRRKMRTLKVRMLD 96
WL L+ Y ++ +L++ + + L++++ +
Sbjct: 77 TWLLKTHWTLDKYGIQADAKLQFTPQHKLLRLQLPN 112
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo
sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Length = 256
Score = 56.3 bits (135), Expect = 3e-08
Identities = 33/254 (12%), Positives = 74/254 (29%), Gaps = 36/254 (14%)
Query: 660 HHVLTEIGESQTNEMQDTLLSLAKAVANTTAALVLKAKSVASTLP-PNQQTSVITSATKC 718
+ L + E+ N + + A+ L+ A S V SA++
Sbjct: 22 NVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQL 81
Query: 719 ALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTK 778
Q++ +A ++ Q+ + ++ V L ++
Sbjct: 82 EALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDD------------- 128
Query: 779 AAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQ 838
+ + + + V+ +DV V + D + R A +
Sbjct: 129 --------ITSIDDFLAVSENHILEDVNKCVIAL---------QEKDVDGLDRTAGAIRG 171
Query: 839 ATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMV-----EAARQCASHPQDIMK 893
A++I + + +N ++L A K L+ A +S P M
Sbjct: 172 RAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMD 231
Query: 894 QEALVTTVEELRQA 907
+ + +
Sbjct: 232 ENEFIDASRLVYDG 245
Score = 38.2 bits (88), Expect = 0.024
Identities = 31/205 (15%), Positives = 70/205 (34%), Gaps = 3/205 (1%)
Query: 821 AASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKNLAEATARMVEA 880
A +G+ E+ A++ + +LI+ + E + + +A L +++ A
Sbjct: 32 AKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINA 91
Query: 881 ARQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLFNKSQTNEFEGLLPGQQEIEEITE 940
A A+ PQ + QE + E+ + L + + + ++F L + I E
Sbjct: 92 ALALAAKPQSKLAQENMDLFKEQWEKQVR-VLTDAVDDITSIDDF--LAVSENHILEDVN 148
Query: 941 IIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYS 1000
++ D R+ I + T + + + K S
Sbjct: 149 KCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVM 208
Query: 1001 HSLQNLVDIGMEIISTTESRETQTK 1025
V+ +E +S+ ++
Sbjct: 209 PRFTEQVEAAVEALSSDPAQPMDEN 233
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix,
transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Length = 103
Score = 51.5 bits (123), Expect = 7e-08
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 336 LLGVTKDS-VLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGDYSDNY---YSVQTTE 391
L +T + L + + + +WPL+ +RR+G + FT + G + + QT +
Sbjct: 24 ALQITYEYICLWDVQNPRVKLISWPLSALRRYGRDTTWFTFEAGRMCETGEGLFIFQTRD 83
Query: 392 AEQIQQLIAGYI 403
E I Q +
Sbjct: 84 GEAIYQKVHSAA 95
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB,
TRK, NPXPY motif,, signaling protein/growth factor
receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Length = 129
Score = 51.6 bits (123), Expect = 1e-07
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 311 SLPTYGVTFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASS 370
++P F V N+L ++ +T ++ + + W +RR+G S
Sbjct: 5 TVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVK--WHYLCLRRYGYDS 62
Query: 371 NVFTLDFGDYSDNY---YSVQTTEAEQIQQLIAGYI 403
N+F+ + G ++ + AE++ ++ +
Sbjct: 63 NLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIM 98
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus
musculus} SCOP: a.24.9.1 PDB: 1dov_A
Length = 205
Score = 46.6 bits (110), Expect = 3e-05
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 5/173 (2%)
Query: 737 ENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKV 796
E+ +++L+ AV++V + + + E D + L+ + ++
Sbjct: 26 ESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAV---TRL 82
Query: 797 TTTEPAQDVETAVEVMMSSSDRL--LAASGDAPEMVRQARILGQATAQLIQAIKGDAENE 854
DV + + D + L +G+ ++ Q + L +L +
Sbjct: 83 LILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQEL 142
Query: 855 PDSELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQA 907
D + ++ AA L + + A++ C HP + ++L+QA
Sbjct: 143 KDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQA 195
Score = 38.5 bits (89), Expect = 0.012
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 1002 SLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLS 1061
+ +N ++ G +I ES+ + +++ +++ V S A A DP +S + +
Sbjct: 12 ATENFLEKGDKIAK--ESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMV 69
Query: 1062 AAARNVADSINNLL 1075
AAR + ++ LL
Sbjct: 70 RAARALLSAVTRLL 83
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal
protein, protein-Pro interactions, cell adhesion,
cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A
1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A
3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A
1t01_A
Length = 258
Score = 46.3 bits (109), Expect = 5e-05
Identities = 25/120 (20%), Positives = 50/120 (41%)
Query: 958 TKPIGRLQQELSSAATGLSETTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTT 1017
T+ I + + ++ + L E K +L A ++ NLV +G E + TT
Sbjct: 6 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTT 65
Query: 1018 ESRETQTKMLSSLKSVSTSSSKFLSTARSAALDPSASNSKSQLSAAARNVADSINNLLNI 1077
E + + M + V + +K + A+ DP + ++ L +R + ++LL
Sbjct: 66 EDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLT 125
Score = 37.0 bits (85), Expect = 0.047
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 2203 VVQGAGTEEKLISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRATDNLVRA 2262
V E L A+Q++ LV + + + A L + AV+ A NLVR
Sbjct: 3 VFHTRTIESILEPVAQQISH-----LVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRV 57
Query: 2263 AQQAIQQDEERSLVLNRKM------VGGIAQEINARSEVLRIERQLEEARGRLT 2310
++ +Q E++ +L R M V ++ +++L+ + AR L
Sbjct: 58 GKETVQTTEDQ--ILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLI 109
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 45.6 bits (107), Expect = 7e-05
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 320 FLVKEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFGD 379
F V K + P L + D ++ + +M W L+ +RR+GA N F + G
Sbjct: 118 FHVTVAPGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGT 177
Query: 380 YSDNY---YSVQTTEAEQIQQLIAGYIDIILKKKMSKDHFGIE 419
+ + + + E EQ+ L I+ +K FG+
Sbjct: 178 RCGYWAGVFFLSSAEGEQMSFLFD---CIVRGISPTKGPFGLR 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.007
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 12/34 (35%)
Query: 1363 KQVSDSIKRLVTSIR----DVAPGQKECDQAIEA 1392
KQ ++K+L S++ D AP AI+A
Sbjct: 19 KQ---ALKKLQASLKLYADDSAPA-----LAIKA 44
Score = 33.8 bits (76), Expect = 0.27
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 91 KVRMLDGTLKTLLVDDSQP 109
++ L +LK L DDS P
Sbjct: 21 ALKKLQASLK-LYADDSAP 38
Score = 30.7 bits (68), Expect = 2.7
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 1383 QKECDQAIEAISSRLR--ELDEVAMLAVSQGQI 1413
+K QA++ + + L+ D LA+ + +
Sbjct: 18 EK---QALKKLQASLKLYADDSAPALAI-KATM 46
Score = 30.3 bits (67), Expect = 4.8
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 40/68 (58%)
Query: 1266 QEIKALDMNYNEKNHQVCTQATKPLLDAVDSLVSFAYSPEFVNRSSHFGDSTLTAQEPIL 1325
Q +K L + K Y+ DS P L
Sbjct: 20 QALKKLQ------------ASLKL------------YAD----------DSA-----PAL 40
Query: 1326 SAGEAIIE 1333
A +A +E
Sbjct: 41 -AIKATME 47
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus}
Length = 26
Score = 34.9 bits (79), Expect = 0.009
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 2127 ILEAAKSIAAATSALVKAASASQRE 2151
ILEAAKSIAAATSALVKAASA+QRE
Sbjct: 1 ILEAAKSIAAATSALVKAASAAQRE 25
>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus
gallus}
Length = 26
Score = 34.4 bits (78), Expect = 0.012
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 828 EMVRQARILGQATAQLIQAIKGDA 851
EMVRQARIL QAT+ L+ AIK DA
Sbjct: 2 EMVRQARILAQATSDLVNAIKADA 25
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.033
Identities = 10/73 (13%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 123 ITNHDEYSLVRENPEDEVENKPNFGTLTLKRKKEEKERDLKMEQLRKKLKTDDEVNWIDF 182
I D + + PE + + +++K +E D + + ++ + + + ++
Sbjct: 74 IAQADR---LTQEPESIRKWRE-------EQRKRLQELDAASKVMEQEWREKAKKDLEEW 123
Query: 183 SKTLREQGIDENE 195
++ EQ +++N+
Sbjct: 124 NQRQSEQ-VEKNK 135
Score = 33.6 bits (76), Expect = 0.45
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 813 MSSSDRLLAASGDAPEMVRQ------ARI--LGQATAQLIQAIKGDAENEPDSELQRRLL 864
++ +DRL PE +R+ R+ L A+ + Q + A+ + + QR+
Sbjct: 74 IAQADRLTQE----PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 865 AAAKNLAEATARMVEAA 881
KN R+ + A
Sbjct: 130 QVEKNKIN--NRIADKA 144
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 100
Score = 34.2 bits (78), Expect = 0.079
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 84 RRKMRTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVENK 143
+ +KV DG +++ V ++ ++ + + + + LV +P
Sbjct: 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPH------ 59
Query: 144 PNFGTLTLKRKKEEKER 160
L L+R E+ E
Sbjct: 60 -----LALERGLEDHES 71
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 36.0 bits (82), Expect = 0.10
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 323 KEKMKGKNKLVPRLLGVTKDSVLRLDERTKEIMKTWPLTTVRRWGASSNVFTLDFG 378
K + KN + L +T ++ + ++ L +RR G S N F ++ G
Sbjct: 168 KGLGQTKNLIGIYRLCLTSKTISFVKLNSEAAAVVLQLMNIRRCGHSENFFFIEVG 223
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 35.4 bits (80), Expect = 0.16
Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 18/252 (7%)
Query: 2040 PGDRIADSKQALPPISRRIAQSLTELVSIAEQLKGSNWMDPDDPTVIAETELLGAAASID 2099
P + K P + ++ A QL P + A +G A D
Sbjct: 22 PRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPAAEVGIGVVAEAD 81
Query: 2100 AAAKKLSSLRPRRSLQETDETLNFDEMILEAAKSIAAATSALVKAA---SASQRELID-A 2155
AA + P E L + I AA +L + A S+ ++I A
Sbjct: 82 AADAAGFPVPPDMEDDYEPELLLMPSNQ-PVNQPILAAAQSLHREATKWSSKGNDIIAAA 140
Query: 2156 GRMSRRPLTSSDDGQWSEDDGQWSEGLISAARLVAAATHTFVEAANSV---VQGAGTEEK 2212
RM+ L ++ + LI A+ +A A+ A V
Sbjct: 141 KRMA---LLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTN 197
Query: 2213 LISSAKQVASSTAQLLVACKVKADPESDATHRLQSAGNAVKRATDNLVRAAQ---QAIQQ 2269
L+ +++ + + QL + VKA + + ++AT+ LV AQ Q++++
Sbjct: 198 LLQVCERIPTISTQLKILSTVKATMLGRTNISDEES----EQATEMLVHNAQNLMQSVKE 253
Query: 2270 DEERSLVLNRKM 2281
+ + K+
Sbjct: 254 TVREAEAASIKI 265
Score = 34.6 bits (78), Expect = 0.34
Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 810 EVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKN 869
+M S + SG +++ A+ + +A+ ++ + K A+ D ++ LL +
Sbjct: 145 LLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCER 204
Query: 870 LA--------EATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTLR 913
+ +T + R S + E LV + L Q+ T+R
Sbjct: 205 IPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 256
Score = 33.1 bits (74), Expect = 1.1
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 955 PRSTKPIGRLQQELSSAATGLSETTNEVISSVKNPA------------------NLPASS 996
+PI Q L AT S N++I++ K A L +
Sbjct: 109 QPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCA 168
Query: 997 KQYSHSLQNLVDIGMEIISTTESRETQTKMLSSLKSVSTSSS--------KFLSTARSAA 1048
K + + + + E+ + +T +L + + T S+ K R+
Sbjct: 169 KDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNI 228
Query: 1049 LDPSASNSKSQLSAAARNVADSINNLLNICTSA 1081
D + + L A+N+ S+ + +A
Sbjct: 229 SDEESEQATEMLVHNAQNLMQSVKETVREAEAA 261
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus
gallus}
Length = 31
Score = 31.0 bits (69), Expect = 0.25
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 856 DSELQRRLLAAAKNLAEATARMVEAARQCAS 886
D E R+LL+AAK LA+ATA+MVEAA+ A+
Sbjct: 1 DLENSRKLLSAAKILADATAKMVEAAKGAAA 31
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical
bundle, lipid binding; 1.8A {Gallus gallus} SCOP:
a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Length = 188
Score = 34.0 bits (77), Expect = 0.31
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 810 EVMMSSSDRLLAASGDAPEMVRQARILGQATAQLIQAIKGDAENEPDSELQRRLLAAAKN 869
+M S + SG+ +++ A+ + +A+ ++ + K A+ D ++ LL +
Sbjct: 50 LLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCER 109
Query: 870 LA--------EATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTLR 913
+ +T + R S + E LV + L Q+ T+R
Sbjct: 110 IPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 161
Score = 33.2 bits (75), Expect = 0.59
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 2115 QETDETLNFDEMILEAAKSIAAATSALVKAA---SASQRELIDAG-RMSRRPLTSSDDGQ 2170
+E DE + + + A L A S+ ++I A RM+ S +
Sbjct: 1 EEKDEEFPEQKAGEAINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMS---R 57
Query: 2171 WSEDDGQWSEGLISAARLVAAATHTFVEAANSV---VQGAGTEEKLISSAKQVASSTAQL 2227
LI A+ +A A+ A V L+ +++ + + QL
Sbjct: 58 LVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQL 117
Query: 2228 LVACKVKADPESDATHRLQSAGNAVKRATDNLVRAAQ 2264
+ VKA R + ++AT+ LV AQ
Sbjct: 118 KILSTVKATMLG----RTNISDEESEQATEMLVHNAQ 150
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP,
signal transduction, cancer, growth regulation, GTP
hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Length = 333
Score = 34.0 bits (77), Expect = 0.65
Identities = 23/172 (13%), Positives = 60/172 (34%), Gaps = 15/172 (8%)
Query: 1392 AISSRLRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAE 1451
++ R L E+ + QG++P + + + + ++ A ++T + +
Sbjct: 3 VLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWN 62
Query: 1452 SIAFSVNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQ--VLHLIKEAG 1509
+ V + +S+ AS ++ K LQ + L++
Sbjct: 63 MFSKEVELADSMQTLFRGNSL--ASKIMTF--------CFKVYGATYLQKLLDPLLRIVI 112
Query: 1510 GNPDAVNIHPDLDESIEATKEALSDITSSLDHFTGVVNTFVDSITKSMQQIP 1561
+ D ++ ++D + E + + + + F +I S + P
Sbjct: 113 TSSDWQHVSFEVDPTRLEPSE---SLEENQRNLLQMTEKFFHAIISSSSEFP 161
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET:
FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1
d.145.1.3
Length = 288
Score = 33.3 bits (77), Expect = 0.91
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 2179 SEGLISAARLV---AAATHTFVEAANSVVQGAGTEEKLISSAKQVASSTAQLLVACKVKA 2235
G AAR+ AN + G +E ++A ++A+ + ++
Sbjct: 202 QGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAELATE------GLEPRS 255
Query: 2236 DPESDATHRLQSAGNAVKRATDNLVRAAQQA 2266
D RL A +R +++AAQ A
Sbjct: 256 DIHGSRDLRLSLAKAITQRV---ILKAAQGA 283
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 32.8 bits (74), Expect = 1.2
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 88 RTLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHDEYSLVRENPEDEVE 141
+ +KV DGT K + + +L ++ K + + ++LV +P +E
Sbjct: 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLE 62
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 1.8
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 28/172 (16%)
Query: 858 ELQRRLLAAAKNLAEATARMVEAARQCASHPQDIMKQEALVTTVEELRQAATPTLRYKLF 917
E++ R+ + + A + +Q + + ++EA ++ + A
Sbjct: 931 EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA--------- 981
Query: 918 NKSQTNEFEGLLPGQQEIEEITEIIESTYEQIHTDDFPRSTKPIGRLQQELSSAATGLSE 977
+I+++ + I +Q + + TK L++ +S T L+E
Sbjct: 982 --------------DGKIKKMEDDILIMEDQNN-----KLTKERKLLEERVSDLTTNLAE 1022
Query: 978 TTNEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSS 1029
+ + K + + L+ E+ E ++ L
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 32.5 bits (74), Expect = 1.9
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 782 EVTKTLNQLLN-HIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQARILGQAT 840
V + + +L N + A + + +MM ASG P++V
Sbjct: 30 PVAREVARLTNVKLVGVANRAATNSQEQFNLMM--------ASGQLPDIV----GGDNLK 77
Query: 841 AQLIQAIKGDA 851
+ I+ A
Sbjct: 78 DKFIRYGMEGA 88
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein;
HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Length = 214
Score = 31.3 bits (70), Expect = 3.3
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 1397 LRELDEVAMLAVSQGQIPHYNSASLQMSAEKTEQAANEILTRLEPLRQAAKYQAESIAFS 1456
LREL +A + IP L + T QAA L +E A++ + + S
Sbjct: 32 LRELGLDQAIAEAAEAIPD-ARDRLYYVVQMTAQAAERALNSVE----ASQPHQDQMEKS 86
Query: 1457 VNQLVTSFDSLASDSMNVASNLIHSKQQMTLLDQTKTVAECLLQVLHLIKEA 1508
L +D +D +++A L L I A
Sbjct: 87 AKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIMMA 138
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel,
rossmann fold, B12-dependent methyltransferase; HET:
B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Length = 323
Score = 31.2 bits (70), Expect = 3.7
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 744 QLMAAVKEVANAVEGLVAMCNETCTDENLNKDLTKAAAEVTKTLNQLLNHIKVTTTEPAQ 803
Q +A VKEV AV V + C D + ++ +A AE N LL + + +
Sbjct: 116 QCVATVKEVLQAVG--VPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAE------QE 167
Query: 804 DVETAVEVMMSSSDRLLAASGDAPEMVRQARIL 836
+ ++ M ++A S + +Q IL
Sbjct: 168 NYKSLTAACMVHKHNIIARSPLDINICKQLNIL 200
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 30.3 bits (68), Expect = 4.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 90 LKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGITNHD 127
L V+ML G + + S V+ L I KIG+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQ 42
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein;
heterodimer, beta-alpha-barrels, oxidoreductase; HET:
B12; 1.90A {Carboxydothermus hydrogenoformans} PDB:
2ycl_B*
Length = 310
Score = 31.1 bits (70), Expect = 4.5
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 8/122 (6%)
Query: 715 ATKCALATSQLVACTKVVAPTLENPACQQQLMAAVKEVANAVEGLVAMCNETCTDENLNK 774
A KC + +VA V A +L K VA+A++ V + C E +
Sbjct: 80 AKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAID--VPLMIIGCGVEEKDA 137
Query: 775 DLTKAAAEVTKTLNQLLNHIKVTTTEPAQDVETAVEVMMSSSDRLLAASGDAPEMVRQAR 834
++ E N LL+ + + V M ++A++ + +Q
Sbjct: 138 EIFPVIGEALSGRNCLLSSAT------KDNYKPIVATCMVHGHSVVASAPLDINLSKQLN 191
Query: 835 IL 836
I+
Sbjct: 192 IM 193
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding,
chaperone; 1.30A {Homo sapiens}
Length = 88
Score = 28.4 bits (64), Expect = 5.8
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGI 123
+ V+ LD +T +V V I + I
Sbjct: 19 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI 53
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 30.2 bits (68), Expect = 6.6
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 818 RLLAASG------D-APEMVRQARILGQATAQLIQAIKGDAENEPDSE 858
R LA G D +V AR G L + P +
Sbjct: 68 RALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGK 115
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain,
alloste S-adenosylmethionine, lysine, allosteric
effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis
thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Length = 510
Score = 30.8 bits (70), Expect = 6.8
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 1841 VVKFGAASLGSNNPEAQVLLINAVKDVTTALGDLIQA-TKAASGKTINDPCMNHLKESAK 1899
V+KFG +S+ + E + V D+ + +A GKT N+ + E A
Sbjct: 30 VMKFGGSSVA--SAER----MKEVADLILTFPEESPVIVLSAMGKTTNN--LLLAGEKAV 81
Query: 1900 VMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAIAQEIRALNSV 1943
+ S ++ + +++ H R + L I + L +
Sbjct: 82 SCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQL 125
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium
falciparum} SCOP: c.37.1.10
Length = 442
Score = 30.5 bits (70), Expect = 6.9
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 980 NEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQTKMLSSL 1030
E IS+ LP ++K+Y +++ + + I +R+ + +
Sbjct: 390 KEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGVGPNRK-NMIVKKNF 439
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system,
structural genomics, protein structure initiative; 2.70A
{Thermotoga maritima}
Length = 319
Score = 30.5 bits (69), Expect = 7.3
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 2260 VRAAQQAIQQDEERSLVLNRKMVGGIAQEINARSEVLRIERQLEEARGRLTAIRQAK--Y 2317
+ Q ++E+ +++ R++V Q N + + + + + +A
Sbjct: 85 LILKQAEHYINQEKRMLIAREIVSRSFQ--NMVDFLKKRKVRADSLTRYKKKAEEASNVS 142
Query: 2318 KLKGGDGSAS 2327
+L G +G+A
Sbjct: 143 ELMGIEGNAR 152
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A
{Gallus gallus} PDB: 1rkc_B
Length = 26
Score = 26.3 bits (57), Expect = 8.8
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 1724 YTHREFADTNRVLAEKVSQVLYALQA 1749
YT +E ++ R ++EKVS VL ALQA
Sbjct: 1 YTKKELIESARKVSEKVSHVLAALQA 26
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein,
PF00240, structural GEN joint center for structural
genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Length = 90
Score = 28.0 bits (63), Expect = 9.5
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 89 TLKVRMLDGTLKTLLVDDSQPVANLMVVICTKIGI 123
+ V+ LD +T +V V I + I
Sbjct: 7 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI 41
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB:
1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A*
1mf1_A* 2dgn_A*
Length = 459
Score = 30.2 bits (69), Expect = 9.7
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 980 NEVISSVKNPANLPASSKQYSHSLQNLVDIGMEIISTTESRETQT 1024
N IS+ + LP +++ Y +++ + I ++ I +SRE
Sbjct: 412 NTDISNARAFKELPVNAQNYVRFIEDELQIPVKWIGVGKSRE-SM 455
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.340
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 32,976,796
Number of extensions: 2018775
Number of successful extensions: 3800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3629
Number of HSP's successfully gapped: 232
Length of query: 2347
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2238
Effective length of database: 3,658,404
Effective search space: 8187508152
Effective search space used: 8187508152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.4 bits)