BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1560
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86YW7|GPHB5_HUMAN Glycoprotein hormone beta-5 OS=Homo sapiens GN=GPHB5 PE=1 SV=1
Length = 130
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 54 AANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHP 113
+ N + C R + + + G + D +CWGRC++ E PY +HH
Sbjct: 27 SGNLRTFVGCAVREFTFLAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYIEAHHR 82
Query: 114 VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCE 162
VC + V L NC V+ Y Y A+ C C C ++ CE
Sbjct: 83 VCTYNETKQVTVKLPNCAPGVDP---FYTYPVAIRCDCGACSTATTECE 128
>sp|Q812B2|GPHB5_MOUSE Glycoprotein hormone beta-5 OS=Mus musculus GN=Gphb5 PE=2 SV=1
Length = 130
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 49 LFSYCAANQDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYK 108
+ S + N + C R + + + G + D +CWGRC++ E PY
Sbjct: 22 VLSSSSGNLHTFVGCAVREFTFMAKKPGCRGLRITTD----ACWGRCETWEKPILEPPYI 77
Query: 109 RSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGL 164
++H VC + V L NC V+ Y Y A+ C C C ++ CE +
Sbjct: 78 EAYHRVCTYNETRQVTVKLPNCAPGVDP---FYTYPMAVRCDCGACSTATTECETI 130
>sp|Q9YGH2|GTHB2_CLUPA Gonadotropin subunit beta-2 OS=Clupea pallasii GN=cgbb PE=2 SV=1
Length = 149
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC +G + + L +C + V+ + Y ALSC+
Sbjct: 55 CSGHCPTKEPV-YKSPFSVVNQHVCTYGNFRYETIRLPDCADGVD---PLVTYPVALSCE 110
Query: 151 CSVCKSSEASC 161
CS+C + C
Sbjct: 111 CSLCSMDTSDC 121
>sp|O09108|LSHB_MOUSE Lutropin subunit beta OS=Mus musculus GN=Lhb PE=2 SV=2
Length = 141
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 111 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + A V L C V+ + + ALSC+C C+ S + C G R
Sbjct: 73 PQPVCTYRELAFASVRLPGCPPGVD---PIVSFPVALSCRCGPCRLSSSDCGGPR 124
>sp|Q9BDI9|LSHB_PANTA Lutropin subunit beta OS=Panthera tigris altaica GN=LHB PE=2 SV=1
Length = 142
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 111 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + V L C V+ V + ALSC+C C+ S + C G R
Sbjct: 74 PQPVCTYRELRFASVRLPGCPPGVD---PVVSFPVALSCRCGPCRLSSSDCGGPR 125
>sp|O77805|LSHB_FELCA Lutropin subunit beta OS=Felis catus GN=LHB PE=2 SV=1
Length = 143
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 111 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + V L C V+ V + ALSC+C C+ S + C G R
Sbjct: 75 PQPVCTYRELRFASVRLPGCPPGVD---PVVSFPVALSCRCGPCRLSSSDCGGPR 126
>sp|P01230|LSHB_RAT Lutropin subunit beta OS=Rattus norvegicus GN=Lhb PE=2 SV=1
Length = 141
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 111 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + V L C V+ + + ALSC+C C+ S + C G R
Sbjct: 73 PQPVCTYRELRFASVRLPGCPPGVD---PIVSFPVALSCRCGPCRLSSSDCGGPR 124
>sp|O13050|GTHB1_CYPCA Gonadotropin subunit beta-1 OS=Cyprinus carpio GN=cgba PE=2 SV=1
Length = 130
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 86 IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
I+ +C G C + E S +R P S+ C + C + V+ Y
Sbjct: 46 IDTTACAGLCKTQE-SVYRSPLMLSYQNTCNFREWTYETYEFKGCPARADS---VFTYPV 101
Query: 146 ALSCKCSVCKSSEASCEGL 164
ALSC+CS C S C L
Sbjct: 102 ALSCECSKCNSDITDCGAL 120
>sp|P30972|GTHB2_FUNHE Gonadotropin subunit beta-2 OS=Fundulus heteroclitus GN=cgbb PE=2
SV=1
Length = 136
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 86 IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
+E C G C + + +++ Y ++ VC +G K C V+ V Y
Sbjct: 47 VETTICSGYCATKD-PNYKTSYNKAIQHVCTYGDLYYKTFEFPECVPGVD---PVVTYPV 102
Query: 146 ALSCKCSVCKSSEASC 161
ALSC+C C + + C
Sbjct: 103 ALSCRCGGCAMATSDC 118
>sp|P18842|LSHB_CANFA Lutropin subunit beta (Fragment) OS=Canis familiaris GN=LHB PE=2
SV=1
Length = 138
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 112 HPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSS 168
PVC + + L C V+ + + ALSC+C C+ S + C G R S
Sbjct: 71 QPVCTYHELHFASIRLPGCPPGVD---PMVSFPVALSCRCGPCRLSNSDCGGPRAQS 124
>sp|P48253|GTHB2_ONCMA Gonadotropin subunit beta-2 OS=Oncorhynchus masou GN=cgbb PE=2 SV=1
Length = 142
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 86 IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
I+ C G C + E +R P+ + VC + +++ L +C V+ Y
Sbjct: 49 IQTPICSGHCITKEPV-FRSPFSTVYQHVCTYRDVRYEMIRLPDCPPWVDPHV---TYPV 104
Query: 146 ALSCKCSVCKSSEASC 161
ALSC CS+C + C
Sbjct: 105 ALSCDCSLCNMDTSDC 120
>sp|Q8WN18|LSHB_AILME Lutropin subunit beta OS=Ailuropoda melanoleuca GN=LHB PE=2 SV=1
Length = 141
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 111 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + + L C V+ + + ALSC+C C+ S + C G R
Sbjct: 73 PQPVCTYHELRFASIRLPGCPPGVD---PMVSFPVALSCRCGPCRLSNSDCGGPR 124
>sp|Q98849|GTHB2_CARAU Gonadotropin subunit beta-2 OS=Carassius auratus GN=cgbb PE=2 SV=1
Length = 140
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC + + V L +C V+ Y ALSC
Sbjct: 54 CSGHCLTKEPV-YKSPFSTVYQHVCTYRDVRYETVRLPDCPPGVDPHI---TYPVALSCD 109
Query: 151 CSVCKSSEASC 161
CS+C + C
Sbjct: 110 CSLCTMDTSDC 120
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1
Length = 4966
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 88 VLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
+LSC D NET D+ KR H P G V+L N E++ T + +LE
Sbjct: 4065 LLSC-AETDENETLDYEEFVKRFHEPAKDIGFNV--AVLLTNLSEHMPNDTRLQTFLE 4119
>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3
Length = 4967
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 88 VLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
+LSC D NET D+ KR H P G V+L N E++ T + +LE
Sbjct: 4066 LLSC-AETDENETLDYEEFVKRFHEPAKDIGFNV--AVLLTNLSEHMPNDTRLQTFLE 4120
>sp|P01235|GTHB2_CYPCA Gonadotropin subunit beta-2 OS=Cyprinus carpio GN=cgbb PE=1 SV=2
Length = 144
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC + + V L +C V+ Y ALSC
Sbjct: 58 CSGHCLTKEPV-YKSPFSTVYQHVCTYRDVRYETVRLPDCPPGVDPHI---TYPVALSCD 113
Query: 151 CSVCKSSEASC 161
CS+C + C
Sbjct: 114 CSLCTMDTSDC 124
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2
Length = 4953
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 88 VLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
+LSC D NET D+ KR H P G V+L N E++ T + +LE
Sbjct: 4052 LLSC-AETDENETLDYEEFVKRFHEPAKDIGFNV--AVLLTNLSEHMPNDTRLQTFLE 4106
>sp|O46483|LSHB_MACRU Lutropin subunit beta (Fragment) OS=Macropus rufus GN=LHB PE=2 SV=1
Length = 138
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 114 VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY 169
VC + + + L C V+ ++ + ALSC C C+ S + C G R +
Sbjct: 74 VCTYRELSFSSIRLPGCPPGVD---PIFSFPVALSCSCGSCRLSHSDCGGPRAQPH 126
>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus GN=RYR2 PE=1 SV=3
Length = 4969
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 88 VLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
+LSC D NET D+ KR H P G V+L N E++ T + +LE
Sbjct: 4067 LLSC-AETDENETLDYEEFVKRFHEPAKDIGFNV--AVLLTNLSEHMPNDTRLQTFLE 4121
>sp|P80664|LSHB_STRCA Lutropin subunit beta OS=Struthio camelus GN=LHB PE=1 SV=1
Length = 128
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 86 IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
+ +C G C + E +R P C +GA + + L C + V
Sbjct: 38 VTTTACGGYCRTREPV-YRSPLGGPAQQACGYGALRYERLALPGCAPGADPTVAVP---V 93
Query: 146 ALSCKCSVCKSSEASC 161
ALSC+C+ C + A C
Sbjct: 94 ALSCRCARCPMATADC 109
>sp|O46482|LSHB_TRIVU Lutropin subunit beta OS=Trichosurus vulpecula GN=LHB PE=2 SV=1
Length = 141
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 114 VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
VC + + + L C V+ ++ + ALSC C C+ S + C G R
Sbjct: 77 VCTYRELSFSSIRLPGCPPGVD---PIFSFPVALSCSCGSCRLSHSDCGGPR 125
>sp|Q98848|GTHB1_CARAU Gonadotropin subunit beta-1 OS=Carassius auratus GN=cgba PE=2 SV=1
Length = 130
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 86 IEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLE 145
I+ +C G C + E S +R P S+ C + C + ++ Y
Sbjct: 46 IDTTACAGLCKTQE-SVYRSPLMLSYQNTCNFREWTYETYEFKGCPARADS---IFTYPV 101
Query: 146 ALSCKCSVCKSSEASCEGL 164
ALSC+CS C S C L
Sbjct: 102 ALSCECSKCNSDITDCGVL 120
>sp|Q8HZR9|LSHB_AILFU Lutropin subunit beta OS=Ailurus fulgens GN=LHB PE=2 SV=1
Length = 141
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 112 HPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + + L C V+ + + ALSC+C C+ S + C G R
Sbjct: 74 QPVCTYHELHFASIRLPGCPPGVD---PMVSFPVALSCRCGPCRLSNSDCGGPR 124
>sp|Q9PS36|FSHB_LITCT Follitropin subunit beta OS=Lithobates catesbeiana GN=fshb PE=1
SV=1
Length = 107
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + + ++ +P K VC + + V + C ENV Y Y A+ C
Sbjct: 26 CSGYCYTKD-ANLMYPQKSEKQGVCTYTEVIYETVKIPGCAENVNP---FYTYPVAVDCH 81
Query: 151 CSVCKSSEASC 161
C C S C
Sbjct: 82 CGRCDSETTDC 92
>sp|Q9QYA9|LSHB_PHOSU Lutropin subunit beta (Fragment) OS=Phodopus sungorus GN=LHB PE=2
SV=1
Length = 128
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 112 HPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + V L C V+ + + ALSC+C C+ S + C G R
Sbjct: 74 QPVCTYHELHFASVRLPGCPPGVD---PMVSFPVALSCRCGPCRLSTSDCGGPR 124
>sp|P53543|GTHB2_CLAGA Gonadotropin subunit beta-2 OS=Clarias gariepinus GN=cgbb PE=1 SV=1
Length = 138
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC + + + L +C V+ Y ALSC+
Sbjct: 52 CSGHCFTKEPV-YKSPFSSIYQHVCTYRDVRYETIRLPDCRPGVDPHV---TYPVALSCE 107
Query: 151 CSVCKSSEASC 161
CS+C + C
Sbjct: 108 CSLCTMDTSDC 118
>sp|P30984|GTHB2_CTEID Gonadotropin subunit beta-2 (Fragment) OS=Ctenopharyngodon idella
GN=cgbb PE=2 SV=1
Length = 146
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC + + V L +C V+ Y ALSC
Sbjct: 60 CSGHCLTKEPV-YKSPFSTVYQHVCTYRDVRYETVRLPDCPPGVDPHI---TYPVALSCD 115
Query: 151 CSVCKSSEASC 161
CS+C + C
Sbjct: 116 CSLCTMDTSDC 126
>sp|P37038|GTHB2_HYPMO Gonadotropin subunit beta-2 OS=Hypophthalmichthys molitrix GN=cgbb
PE=1 SV=1
Length = 141
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC + + V L +C V+ Y ALSC
Sbjct: 55 CSGHCLTKEPV-YKSPFSTVYQHVCTYRDVRYETVRLPDCPPGVDPHI---TYPVALSCD 110
Query: 151 CSVCKSSEASC 161
CS+C + C
Sbjct: 111 CSLCTMDTSDC 121
>sp|Q9DG80|GTHB2_ICTPU Gonadotropin subunit beta-2 OS=Ictalurus punctatus GN=cgbb PE=2
SV=1
Length = 140
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 91 CWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCK 150
C G C + E ++ P+ + VC + + V L +C V+ Y ALSC+
Sbjct: 54 CSGHCLTKEPV-YKSPFSNIYQHVCTYRDVRYETVRLPDCRPGVDPHV---TYPVALSCE 109
Query: 151 CSVCKSSEASC 161
C++C + C
Sbjct: 110 CTLCTMDTSDC 120
>sp|P01232|LSHB_PIG Lutropin subunit beta OS=Sus scrofa GN=LHB PE=1 SV=2
Length = 141
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 111 HHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
PVC + + + L C V+ + ALSC C C+ S + C G R
Sbjct: 73 PQPVCTYRELSFASIRLPGCPPGVD---PTVSFPVALSCHCGPCRLSSSDCGGPR 124
>sp|Q6NT52|CGB2_HUMAN Choriogonadotropin subunit beta variant 2 OS=Homo sapiens GN=CGB2
PE=2 SV=4
Length = 195
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 114 VCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCKSSEASCEGLR 165
VC + + + L C V V Y ALSC+C++C+ S C G +
Sbjct: 106 VCNYRDVRFESIRLPGCPRGVN---PVVSYAVALSCQCALCRRSTTDCGGPK 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,389,462
Number of Sequences: 539616
Number of extensions: 2423558
Number of successful extensions: 10434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 10421
Number of HSP's gapped (non-prelim): 63
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)