Query psy1560
Match_columns 175
No_of_seqs 119 out of 262
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 16:49:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ay9_B Follitropin subunit bet 100.0 9.4E-43 3.2E-47 266.9 9.3 100 61-167 1-100 (111)
2 1hcn_B Human chorionic gonadot 100.0 1.4E-40 4.9E-45 264.8 10.2 106 57-169 3-108 (145)
3 2k8p_A Sclerostin; WNT signall 94.9 0.1 3.6E-06 42.8 8.1 88 59-152 52-144 (189)
4 4ay9_A Glycoprotein hormones, 79.9 0.84 2.9E-05 33.5 2.0 56 88-155 25-88 (92)
5 2qcq_A Bone morphogenetic prot 22.0 2.2E+02 0.0076 20.4 7.0 85 60-152 5-110 (110)
6 2ask_A Artemin; glial cell der 18.9 1.6E+02 0.0055 21.7 4.6 86 59-152 12-112 (113)
7 3hh2_A Growth/differentiation 15.0 2.5E+02 0.0086 20.1 4.8 85 59-152 11-109 (109)
8 1ok0_A Tendamistat, alpha-amyl 13.2 73 0.0025 22.4 1.3 25 116-144 14-38 (74)
9 1ef4_A Subunit N, DNA-directed 12.4 47 0.0016 22.0 0.1 18 20-37 26-43 (55)
10 3izc_t 60S acidic ribosomal pr 12.1 47 0.0016 24.4 0.0 13 22-34 91-103 (106)
No 1
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=100.00 E-value=9.4e-43 Score=266.92 Aligned_cols=100 Identities=17% Similarity=0.376 Sum_probs=96.7
Q ss_pred CCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccCCeee
Q psy1560 61 LDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQGTEV 140 (175)
Q Consensus 61 ~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~ 140 (175)
++|+|+|+||.|||+||++| ++||||||||||+|+| |+|++|++.++|+||||++|+|+|++|||||+|||| +
T Consensus 1 ~~C~~~n~ti~vEk~~C~~c---~~i~TtiC~G~C~T~d-~v~~~p~~~~~Q~VCty~~~~y~tv~LpgC~pgVdP---~ 73 (111)
T 4ay9_B 1 NSCELTNITIAIEKEECRFC---ISINTTWCAGYCYTRD-LVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADS---L 73 (111)
T ss_dssp CCEEEEEEEEEEEEGGGTEE---EEEEEEEEEEEEEEEC-CSSCCTTCCCCCCEEEEEEEEEEEEEECCCTTSCCE---E
T ss_pred CCcceEeEEEEEEcCCCCcc---cEEEEeeEccCcccCC-ccccCcCCCccCCCcccCCEEEEEEECCCccCCCCC---C
Confidence 47999999999999999999 8999999999999997 999999999999999999999999999999999999 9
Q ss_pred EEEeeeeceecCCCCCCCCccccccCc
Q psy1560 141 YRYLEALSCKCSVCKSSEASCEGLRYS 167 (175)
Q Consensus 141 ytYPvAlSC~C~~C~t~~TdC~~~~~~ 167 (175)
|+||||+||+|++|++++|||+..+..
T Consensus 74 ~tYPVA~sC~C~~C~t~~TdCt~~~~~ 100 (111)
T 4ay9_B 74 YTYPVATQCHCGKCDSDSTDCTVRGLG 100 (111)
T ss_dssp EEEEEEEEEEEECBCTTTEEEESCCSC
T ss_pred EEeeecccccCCCcCCCCccccccCCC
Confidence 999999999999999999999987655
No 2
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=100.00 E-value=1.4e-40 Score=264.80 Aligned_cols=106 Identities=20% Similarity=0.362 Sum_probs=101.9
Q ss_pred CCCCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCCCCCCCCCCCCCcccCceEEEEEEeCCCCCCccC
Q psy1560 57 QDITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDWRFPYKRSHHPVCQHGARALKVVILNNCEENVEQ 136 (175)
Q Consensus 57 ~~~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~~~P~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP 136 (175)
+.++++|||+||||.|||+||++| +.||||||||||+||| |+|++|+...+|+||||++|+|++|+||||++||||
T Consensus 3 ~~~~~~C~l~n~Ti~vEke~C~~c---~~InTtiC~GyC~T~d-pv~~~p~~~~~Q~vCTy~e~~y~tv~LpgC~~gvdp 78 (145)
T 1hcn_B 3 EPLRPRCRPINATLAVEKEGCPVC---ITVNTTICAGYCPTMT-RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNP 78 (145)
T ss_dssp CCSSBBSEEEEEEEEECCTTCSCC---EEEEEEEEEEEEEECC-CCBTTCSSCCCCEEEEEEEEEEEEEECTTCCSSCCC
T ss_pred CcccCCCeEeeeEEEEeeCCCCce---EEEEeeeEcCEeecCC-CCCcCCCCCccCCCcccCCEEEEEEEcCCCcCCCCc
Confidence 467899999999999999999999 9999999999999998 999999999999999999999999999999999999
Q ss_pred CeeeEEEeeeeceecCCCCCCCCccccccCccc
Q psy1560 137 GTEVYRYLEALSCKCSVCKSSEASCEGLRYSSY 169 (175)
Q Consensus 137 ~~~~ytYPvAlSC~C~~C~t~~TdC~~~~~~~~ 169 (175)
+|+||||+||+|++|++++|||++++.+..
T Consensus 79 ---~~tYPVA~SC~C~~C~~~~tdC~~~~~~p~ 108 (145)
T 1hcn_B 79 ---VVSYAVALSCQCALCRRSTTDCGGPKDHPL 108 (145)
T ss_dssp ---EEEEEEEEEEEEEECCTTTEEEECCCSCCS
T ss_pred ---cEEecccccccCCCCCCCCccccCcCCCCC
Confidence 999999999999999999999999987754
No 3
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A
Probab=94.92 E-value=0.1 Score=42.81 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCC-CCCCCC---CCCCC-CCCCcccCceEEEEEEeCCCCCC
Q psy1560 59 ITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNE-TSDWRF---PYKRS-HHPVCQHGARALKVVILNNCEEN 133 (175)
Q Consensus 59 ~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e-~p~~~~---P~~~s-~Q~VCty~~~~y~tv~LpgC~~g 133 (175)
.-.+|+-.-++-++....|... ..|.-..|+|.|.... .|+|.- -++.+ ....|+-...+.+.|+|. |++|
T Consensus 52 ~~~~Crg~r~r~Yisdg~CrS~---kpVk~lvCsG~C~p~~~lpn~i~~~K~wr~s~~~~cCvp~rsRrrRIqm~-C~DG 127 (189)
T 2k8p_A 52 SEYSCRELHFTRYVTDGPCRSA---KPVTELVCSGQCGPARLLPNAIGRGKWWRPSGPDFRCIPDRYRAQRVQLL-CPGG 127 (189)
T ss_dssp CCSSSCEEEEEECCCCSSCEES---SCEEEEEECCCCCCCCCCSSCCCSSCCCSCCCCCCCCEECCEEEEEEEEE-CCTT
T ss_pred cccccccceeeEEEecCceeEc---cccccceEeccccCccccccccccccccccCCCcccccCCceeeEEEEEE-cCCC
Confidence 4578999999988988888887 7999999999997443 243332 11112 256899999999999996 9999
Q ss_pred ccCCeeeEEEeeeeceecC
Q psy1560 134 VEQGTEVYRYLEALSCKCS 152 (175)
Q Consensus 134 VdP~~~~ytYPvAlSC~C~ 152 (175)
--| .++..-+-.+|+|.
T Consensus 128 tt~--rt~ki~vV~sCkCk 144 (189)
T 2k8p_A 128 EAP--RARKVRLVASCKCK 144 (189)
T ss_dssp SCC--EEEEEEEECCEECC
T ss_pred Cee--eEEEEEEEEeeccc
Confidence 775 35666778899999
No 4
>4ay9_A Glycoprotein hormones, alpha polypeptide; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1dz7_A 1e9j_A* 1fl7_A* 1hcn_A* 1hd4_A* 1xwd_A* 1hrp_A* 1qfw_A*
Probab=79.88 E-value=0.84 Score=33.52 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=39.7
Q ss_pred EeeeeeecccCCCCCC-------CCC-CCCCCCCCcccCceEEEEEEeCCCCCCccCCeeeEEEeeeeceecCCCC
Q psy1560 88 VLSCWGRCDSNETSDW-------RFP-YKRSHHPVCQHGARALKVVILNNCEENVEQGTEVYRYLEALSCKCSVCK 155 (175)
Q Consensus 88 Tt~C~G~C~T~e~p~~-------~~P-~~~s~Q~VCty~~~~y~tv~LpgC~~gVdP~~~~ytYPvAlSC~C~~C~ 155 (175)
+--|.|-|+|+..|.. ..| ..+|....|.-+.+.++++. .+ +..-.-..|+|+.|-
T Consensus 25 iyQC~GCCFSrAYPTPlrskktM~vPKNITSEAtCCVAk~~~~vt~~-----~~-------~~v~NHT~ChCsTCy 88 (92)
T 4ay9_A 25 ILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVM-----GG-------FKVENHTACHCSTCY 88 (92)
T ss_dssp CEEEEEEEEEEEEECCHHHHTTCSSCCSEEEECCEEEEEEEEEEEET-----TT-------EEEEEEEEEEEECCS
T ss_pred eEEecceeeccccCCccchhhcccCCccccCceeEEEeecceeEEEe-----cC-------eEEeeccccccccee
Confidence 5789999999997652 122 24566778998878777662 12 445778899999995
No 5
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=21.98 E-value=2.2e+02 Score=20.35 Aligned_cols=85 Identities=19% Similarity=0.337 Sum_probs=51.7
Q ss_pred CCCceeeeeeEEEEecCCCCCccc----eeEEEeeeeeecccCCCCCCCC---------------CCCCCCCCCcccCce
Q psy1560 60 TLDCHRRVYKYRVSQTDSLGRKCW----DDIEVLSCWGRCDSNETSDWRF---------------PYKRSHHPVCQHGAR 120 (175)
Q Consensus 60 ~~~C~l~n~Ti~VEk~dC~~c~C~----~~I~Tt~C~G~C~T~e~p~~~~---------------P~~~s~Q~VCty~~~ 120 (175)
...|.++.+.|..+.-+-+. | ...+..-|.|-|..-- +.+.. +.....++.|...+.
T Consensus 5 ~~~C~r~~l~VdF~dlGW~~---WIiaP~~y~a~yC~G~C~~pl-~~~~~~tnHa~vq~l~~~~~~~~~~~~pCCvPt~l 80 (110)
T 2qcq_A 5 PRNCARRYLKVDFADIGWSE---WIISPKSFDAYYCSGACQFPM-PKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKM 80 (110)
T ss_dssp CSBSEEECCEEETTTTTCTT---TEEECSEEECCEEECBCCSSC-CGGGCCCHHHHHHHHHHHTCCSTTCCCCCEEECSE
T ss_pred CCCcEEEEEEEEeeccCCcc---eEECCCceEeEEeEeECCCCc-ccccCCChhHHHHHHHHhccCCCCCCCCcCCCeeE
Confidence 34599998888875434332 2 2458899999998531 11100 012245889998888
Q ss_pred EEEEEEeCCCCCCccCCeeeEEEe--eeeceecC
Q psy1560 121 ALKVVILNNCEENVEQGTEVYRYL--EALSCKCS 152 (175)
Q Consensus 121 ~y~tv~LpgC~~gVdP~~~~ytYP--vAlSC~C~ 152 (175)
....+.-- +.+- .+.+-+|| +|.+|.|+
T Consensus 81 ~~ls~ly~--d~~~--~v~~~~~~~Mvv~~CgC~ 110 (110)
T 2qcq_A 81 SSLSILFF--DENK--NVVLKVYPNMTVESCACR 110 (110)
T ss_dssp EEEEEEEE--CTTC--CEEEEEEEEEEECCEEEC
T ss_pred ccEEEEEE--eCCC--CEEEEEcCCcEEeecccC
Confidence 77655432 1111 23345677 99999995
No 6
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=18.91 E-value=1.6e+02 Score=21.70 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=53.2
Q ss_pred CCCCceeeeeeEEEEecCCCCCccceeEEEeeeeeecccCCCCCC-------------CCC--CCCCCCCCcccCceEEE
Q psy1560 59 ITLDCHRRVYKYRVSQTDSLGRKCWDDIEVLSCWGRCDSNETSDW-------------RFP--YKRSHHPVCQHGARALK 123 (175)
Q Consensus 59 ~~~~C~l~n~Ti~VEk~dC~~c~C~~~I~Tt~C~G~C~T~e~p~~-------------~~P--~~~s~Q~VCty~~~~y~ 123 (175)
....|.++.+.+.++.-+=+.-. -..++..-|.|-|.... .++ ..| -....++.|........
T Consensus 12 ~~~~C~l~~l~V~f~dLGw~~~a-p~~y~a~yC~G~C~~~~-tnHa~vl~~l~~~~~~~~p~~~~~~~~PCCvPt~~~~i 89 (113)
T 2ask_A 12 GARGCRLRSQLVPVRALGLGHRS-DELVRFRFCSGSCRRAR-SPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAV 89 (113)
T ss_dssp -CCBSEEEEEEEEGGGGSSSCCC-CCEEEEEEEECBCGGGC-CHHHHHHHHHHHHTCSCCCSSSCCCSSCEEEEEEEEEE
T ss_pred CCCCceeEEEEEEHHHcCCCccC-cCeeeeeeeeeeCCCCC-CcHHHHHHHHHHhccccCcccCCCCCCCCccCceecce
Confidence 45679999999999665533210 03567899999997643 111 111 03456899997777655
Q ss_pred EEEeCCCCCCccCCeeeEEEeeeeceecC
Q psy1560 124 VVILNNCEENVEQGTEVYRYLEALSCKCS 152 (175)
Q Consensus 124 tv~LpgC~~gVdP~~~~ytYPvAlSC~C~ 152 (175)
.+ | +.+ -..+.|.=.||.+|.|.
T Consensus 90 S~-L---d~~--v~~k~~~~Mva~~CgC~ 112 (113)
T 2ask_A 90 SF-M---DVN--STWRTVDRLSATACGCL 112 (113)
T ss_dssp EE-E---CTT--SCEEEEEEEEEEEEEEE
T ss_pred EE-E---cCc--eeeeecCCcEEeecccC
Confidence 54 3 223 23445666799999983
No 7
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=15.00 E-value=2.5e+02 Score=20.08 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=51.8
Q ss_pred CCCCceeeeeeEEEEecCCCCCccce----eEEEeeeeeecccCCCCCCC--------CCCCCCCCCCcccCceEEEEEE
Q psy1560 59 ITLDCHRRVYKYRVSQTDSLGRKCWD----DIEVLSCWGRCDSNETSDWR--------FPYKRSHHPVCQHGARALKVVI 126 (175)
Q Consensus 59 ~~~~C~l~n~Ti~VEk~dC~~c~C~~----~I~Tt~C~G~C~T~e~p~~~--------~P~~~s~Q~VCty~~~~y~tv~ 126 (175)
....|.++.+.|..+.-+= . |+ ..+..-|.|-|..--...+. .| ....++.|...+.....+.
T Consensus 11 ~~~~C~r~~l~V~F~dlGW---d-WIiaP~~y~a~yC~G~C~~p~~~~~~h~~l~~~~~p-~~~~~pCCvPt~l~~ls~l 85 (109)
T 3hh2_A 11 TESRCCRYPLTVDFEAFGW---D-WIIAPKRYKANYCSGECEFVFLQKYPHTHLVHQANP-RGSAGPCCTPTKMSPINML 85 (109)
T ss_dssp CCCBSEEECCEEEHHHHTC---T-TEEECSEEECCEEECBCCTTTTCCCHHHHHHHHHCC-TTCCCCCEEEEEEEEEEEE
T ss_pred CCCCcEEEEEEEeHHHcCC---C-eEeCCCcccceeecccCCCcccccCchhhhhhhcCc-ccCCCceEeeeeeccEEEE
Confidence 4467999988887754333 2 42 45899999999753111110 11 1356889998777666655
Q ss_pred eCCCCCCccCCeeeEEEe--eeeceecC
Q psy1560 127 LNNCEENVEQGTEVYRYL--EALSCKCS 152 (175)
Q Consensus 127 LpgC~~gVdP~~~~ytYP--vAlSC~C~ 152 (175)
--+ .+- .+.+-+|| +|.+|.|+
T Consensus 86 y~d--~~~--~v~~~~~~~Mvv~~CgCs 109 (109)
T 3hh2_A 86 YFN--GKE--QIIYGKIPAMVVDRCGCS 109 (109)
T ss_dssp EEC--TTC--CEEEEEEEEEEEEEEEEC
T ss_pred EEe--CCC--CEEEEEcCCeEEeeeEeC
Confidence 431 111 23345677 99999996
No 8
>1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A
Probab=13.21 E-value=73 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=19.6
Q ss_pred ccCceEEEEEEeCCCCCCccCCeeeEEEe
Q psy1560 116 QHGARALKVVILNNCEENVEQGTEVYRYL 144 (175)
Q Consensus 116 ty~~~~y~tv~LpgC~~gVdP~~~~ytYP 144 (175)
.|.+|+|-.|.. ||...|.- .+.|-
T Consensus 14 ~~qsWRYT~V~N-~Cs~tvsV---tV~Y~ 38 (74)
T 1ok0_A 14 LYQSWRYSQADN-GCAETVTV---KVVYE 38 (74)
T ss_dssp EEECSSEEEEEE-CSSSCEEE---EEEET
T ss_pred EecceEEEeecC-CCcccEEE---EEEEe
Confidence 578999999998 89998765 44453
No 9
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=12.36 E-value=47 Score=22.05 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=13.9
Q ss_pred hHHHHHhhhHhcCCchhH
Q psy1560 20 EEEEEEEACYDTGHKRLI 37 (175)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (175)
+.+.+++|.-+||++|.=
T Consensus 26 ~~~~~~~~LD~Lg~~RyC 43 (55)
T 1ef4_A 26 DGEDPKDVLDDLGLKRYC 43 (55)
T ss_dssp HTCCHHHHHHHHTCSSHH
T ss_pred cCCCHHHHHHHcCCceEe
Confidence 345677899999999864
No 10
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=12.07 E-value=47 Score=24.42 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHhhhHhcCCc
Q psy1560 22 EEEEEACYDTGHK 34 (175)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (175)
||+||.=.|+||.
T Consensus 91 e~~EEsddDmGfg 103 (106)
T 3izc_t 91 EAKEESDDDMGFG 103 (106)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 3334445688886
Done!