BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15601
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 66/72 (91%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
+I+ESP+KQLTLNEIYNWF F YFRRNAATWKNAVRHNLSLHK F+RVENVKGAVWTV
Sbjct: 16 AILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYFVRVENVKGAVWTV 75
Query: 61 DEVEFYKRRPQR 72
DEVEF KRRPQ+
Sbjct: 76 DEVEFQKRRPQK 87
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 68/78 (87%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
+I+ES D+QLTLNEIY+WF TF YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 15 AIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 74
Query: 61 DEVEFYKRRPQRMLSGQT 78
DEVE+ KRR Q++ T
Sbjct: 75 DEVEYQKRRSQKITGSPT 92
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
+I+E+P+KQ TLNEIY+WF F +FR + ATWKNA+RHNLSLHKCF+RVE+ KGAVWTV
Sbjct: 14 AILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFVRVESEKGAVWTV 73
Query: 61 DEVEFYKRR 69
DE+EF K+R
Sbjct: 74 DELEFRKKR 82
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
+I +PDKQLTLN IY + Y+R W+N++RHNLSL++ F++V E KG
Sbjct: 28 AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 87
Query: 56 AVWTVD--------EVEFYKRRPQ 71
+ W +D E F KRRP+
Sbjct: 88 SFWRIDPASESKLIEQAFRKRRPR 111
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
+I +PDKQLTLN IY + Y+R W+N++RHNLSL++ F++V E KG
Sbjct: 15 AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 74
Query: 56 AVWTVD--------EVEFYKRRPQ 71
+ W +D E F KRRP+
Sbjct: 75 SFWRIDPASESKLIEQAFRKRRPR 98
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
+I +P+K++TLN IY + + F ++R N W+N++RHNLSL++CF++V + KG
Sbjct: 16 AIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKG 75
Query: 56 AVWTVD 61
+ WT+D
Sbjct: 76 SYWTLD 81
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
+I SPDK+LTL++IY W YF+ ++A WKN++RHNLSLH FMRV+N
Sbjct: 13 AIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQN 69
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
+I SPDK+LTL++IY W YF+ ++A WKN++RHNLSLH FMRV+N
Sbjct: 21 AIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQN 77
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD
DNA-Recognition Motif Resembles Histone H5
Length = 102
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
+I ++P K LTL+EIY W + F Y+R N W+N++RH+LS + CF++V KG
Sbjct: 15 AIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKG 74
Query: 56 AVWTV 60
+ W +
Sbjct: 75 SYWAL 79
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
+I++SP K+LTL+ I + N F Y+R W+N++RHNLSL+ CF+++ KG
Sbjct: 14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 73
Query: 56 AVWTVD 61
WT+D
Sbjct: 74 NYWTLD 79
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis,
20 Structures
Length = 109
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
+I++SP K+LTL+ I + N F Y+R W+N++RHNLSL+ CF+++ KG
Sbjct: 15 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 74
Query: 56 AVWTVD 61
WT+D
Sbjct: 75 NYWTLD 80
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
+I +P+K+LTL +IY W T YF+ ++A WKN++RHNLSLH F++V N
Sbjct: 52 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN 108
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4
Bound To Dna
Length = 110
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
+I +P+K+LTL +IY W T YF+ ++A WKN++RHNLSLH F++V N
Sbjct: 36 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN 92
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 8 KQLTLNEIYNWFQNTFCYFRRNAAT-WKNAVRHNLSLHKCFMRVENVKGAV--WTV 60
K++TL +IY W ++ F YF+ A WKN++RHNLSLH F+R + G V WT+
Sbjct: 37 KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSANGKVSFWTI 92
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
+I S +K+LTL++IY W + YF+ ++A WKN++RHNLSLH F+RV+N
Sbjct: 23 AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN 79
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
+I S +K+LTL++IY W + YF+ ++A WKN++RHNLSLH F+RV+N
Sbjct: 23 AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN 79
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 14/88 (15%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
+I + D+QLTL+ IY + Y+R W+N++RHNLSL++ F++V E KG
Sbjct: 15 AISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 74
Query: 56 AVWTVD--------EVEFYKRRPQRMLS 75
+ W +D E F KRR QR +S
Sbjct: 75 SFWRIDPASEAKLVEQAFRKRR-QRGVS 101
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
+I +S +LTL EI + F +FR + W+N+VRHNLSL+ CF++V W
Sbjct: 14 AIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGK 73
Query: 61 D 61
D
Sbjct: 74 D 74
>pdb|3O3M|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 385
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 14 EIYNWFQNTFCYFR----RNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRR 69
E+YN + T F +++ T K ++R + FMR E V D +
Sbjct: 165 EVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFFMRKEEHTELVK--DLIAKLNAM 222
Query: 70 PQRMLSGQTYLCTNVLCDTKTISD 93
P+ + SG+ L T +L D+K I D
Sbjct: 223 PEEVCSGKKVLLTGILADSKDILD 246
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 10 LTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSL--HKCFMRVENVKGAVWTVDEVEFYK 67
LT+ I N F + F T +++ R + + C + + + G + E+
Sbjct: 19 LTIQLIQNHFVDEF------DPTIEDSYRKQVVIDGETCLLDILDTAG------QEEYSA 66
Query: 68 RRPQRMLSGQTYLCTNVLCDTKTISD 93
R Q M +G+ +LC + +TK+ D
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFED 92
>pdb|1RRB|A Chain A, The Ras-Binding Domain Of Raf-1 From Rat, Nmr, 1
Structure
Length = 107
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 21 NTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKG 55
NT F N VR+ +SLH C M+ V+G
Sbjct: 19 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRG 53
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 40 NLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTI 91
N+++H F +N + V + E YKR+ + + Y C +C K+I
Sbjct: 239 NINIHYVFSYKQNSDATSFYVQD-EIYKRKTEFLNLFNNYKCELYICGKKSI 289
>pdb|1V0Z|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1W1X|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W20|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W21|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|2CML|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K
Length = 389
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 45 KCFMRVENVKGA---VWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTISD 93
KC R +N KGA V T+D P+ M YLC+ VL DT +D
Sbjct: 208 KCICR-DNWKGANRPVITID--------PEMMTHTSKYLCSKVLTDTSRPND 250
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 40 NLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTI 91
N+++H F +N + V + E YKR+ + + Y C +C K+I
Sbjct: 239 NINIHYVFSYKQNSDATSFYVQD-EIYKRKTEFLNLFNNYKCELYICGLKSI 289
>pdb|1GUA|B Chain B, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
Length = 81
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 21 NTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKG 55
NT F N VR+ +SLH C M+ V+G
Sbjct: 6 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRG 40
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 40 NLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTI 91
N+++H F +N + V + E YKR+ + + Y C +C K+I
Sbjct: 239 NINIHYVFSYKQNSDATSFYVQD-EIYKRKTEFLNLFNNYKCELYICGHKSI 289
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 10 LTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSL--HKCFMRVENVKGAVWTVDEVEFYK 67
LT+ I N F + + T +++ R + + C + + + G + E+
Sbjct: 19 LTIQLIQNHFVDEY------DPTIEDSYRKQVVIDGETCLLDILDTAG------QEEYSA 66
Query: 68 RRPQRMLSGQTYLCTNVLCDTKTISD 93
R Q M +G+ +LC + +TK+ D
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFED 92
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 10 LTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSL--HKCFMRVENVKGAVWTVDEVEFYK 67
LT+ I N F + + T +++ R + + C + + + G + E+
Sbjct: 19 LTIQLIQNHFVDEY------DPTIEDSYRKQVVIDGETCLLDILDTAG------QEEYSA 66
Query: 68 RRPQRMLSGQTYLCTNVLCDTKTISD 93
R Q M +G+ +LC + +TK+ D
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFED 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,894,483
Number of Sequences: 62578
Number of extensions: 135355
Number of successful extensions: 366
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 58
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)