Query psy15601
Match_columns 144
No_of_seqs 147 out of 744
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:53:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a07_F Forkhead box protein P2 100.0 4.5E-36 1.5E-40 215.5 -0.7 75 1-75 15-89 (93)
2 1vtn_C HNF-3/FORK head DNA-rec 100.0 1.5E-33 5E-38 205.3 3.3 64 1-64 15-83 (102)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 1.5E-33 5.3E-38 204.5 2.7 63 1-63 14-82 (100)
4 2hdc_A Protein (transcription 100.0 1.2E-33 4.3E-38 204.0 0.1 63 1-63 14-81 (97)
5 2c6y_A Forkhead box protein K2 100.0 4.3E-33 1.5E-37 205.6 3.0 63 1-63 28-95 (111)
6 3coa_C Forkhead box protein O1 100.0 7.1E-33 2.4E-37 206.1 2.6 73 1-73 23-103 (117)
7 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 4.4E-33 1.5E-37 205.0 -0.1 63 1-63 15-82 (109)
8 3bpy_A FORK head domain, forkh 100.0 3.6E-32 1.2E-36 192.1 2.3 61 1-61 17-85 (85)
9 3l2c_A Forkhead box protein O4 100.0 1.3E-31 4.6E-36 197.2 2.3 64 1-64 36-107 (110)
10 1e17_A AFX; DNA binding domain 100.0 1.1E-31 3.8E-36 207.0 0.8 67 1-67 52-126 (150)
11 3g73_A Forkhead box protein M1 99.9 1.9E-29 6.4E-34 193.0 1.2 64 1-64 30-96 (142)
12 1ufn_A Putative nuclear protei 21.0 20 0.00069 25.1 -0.0 13 28-40 62-74 (94)
13 1h5p_A Nuclear autoantigen SP1 20.3 21 0.00073 25.0 -0.0 15 28-42 57-71 (95)
No 1
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=4.5e-36 Score=215.52 Aligned_cols=75 Identities=79% Similarity=1.312 Sum_probs=67.6
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeeccCCCceEEecchhhhhcCccccCC
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLS 75 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~rgkg~~W~i~~~~~~~rr~~r~~~ 75 (144)
||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++|||+||+|||+++.++|.++...
T Consensus 15 AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~gkG~~W~l~~~~~~k~r~~~~~~ 89 (93)
T 2a07_F 15 AIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRRSQKITG 89 (93)
T ss_dssp HHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEECSSSEECCBCHHHHHHHC------
T ss_pred HHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCCCCCCeeEEChHHhhccccccccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999888776654
No 2
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=99.97 E-value=1.5e-33 Score=205.27 Aligned_cols=64 Identities=41% Similarity=0.924 Sum_probs=61.2
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchh
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVE 64 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~ 64 (144)
||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++ |||+||+|+|+.
T Consensus 15 AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p~~ 83 (102)
T 1vtn_C 15 AIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSS 83 (102)
T ss_dssp HHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECGGG
T ss_pred HHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEECcCH
Confidence 7999999999999999999999999999999999999999999999999976 899999999863
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.97 E-value=1.5e-33 Score=204.53 Aligned_cols=63 Identities=38% Similarity=0.730 Sum_probs=60.0
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc------CCCceEEecch
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN------VKGAVWTVDEV 63 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r------gkg~~W~i~~~ 63 (144)
||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++ |||+||+|||+
T Consensus 14 AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~p~ 82 (100)
T 1kq8_A 14 AIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPN 82 (100)
T ss_dssp HHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC-
T ss_pred HHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEECcC
Confidence 7999999999999999999999999999999999999999999999999975 79999999975
No 4
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.97 E-value=1.2e-33 Score=204.04 Aligned_cols=63 Identities=43% Similarity=0.908 Sum_probs=60.6
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV 63 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~ 63 (144)
||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++ |||+||+|+++
T Consensus 14 AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p~ 81 (97)
T 2hdc_A 14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ 81 (97)
T ss_dssp HHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTT
T ss_pred HHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECcC
Confidence 7999999999999999999999999999999999999999999999999976 79999999985
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=99.97 E-value=4.3e-33 Score=205.56 Aligned_cols=63 Identities=43% Similarity=0.860 Sum_probs=60.5
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV 63 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~ 63 (144)
||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++ |||+||+|||+
T Consensus 28 AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~ 95 (111)
T 2c6y_A 28 AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPA 95 (111)
T ss_dssp HHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHH
T ss_pred HHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEEeChh
Confidence 7999999999999999999999999999999999999999999999999975 79999999985
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=99.97 E-value=7.1e-33 Score=206.07 Aligned_cols=73 Identities=40% Similarity=0.727 Sum_probs=59.4
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCcccc-----ccccccchhhcccCccceeecc---CCCceEEecchhhhhcCccc
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNA-----ATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVDEVEFYKRRPQR 72 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~-----~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~~~~~~~rr~~r 72 (144)
||++||+++|||+|||+||+++||||+.+. .|||||||||||+|+||+||++ |||+||+|||+....++.+|
T Consensus 23 AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~~~GKg~~W~l~p~~~~~~~~~R 102 (117)
T 3coa_C 23 AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPR 102 (117)
T ss_dssp HHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCSSTTCCCEEEECC----------
T ss_pred HHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccCCCCCcceEEECccccccCcccc
Confidence 799999999999999999999999999875 7999999999999999999986 79999999998654444333
Q ss_pred c
Q psy15601 73 M 73 (144)
Q Consensus 73 ~ 73 (144)
+
T Consensus 103 r 103 (117)
T 3coa_C 103 R 103 (117)
T ss_dssp -
T ss_pred c
Confidence 3
No 7
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.97 E-value=4.4e-33 Score=205.00 Aligned_cols=63 Identities=43% Similarity=0.908 Sum_probs=60.7
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV 63 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~ 63 (144)
||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++ |||+||+|+|+
T Consensus 15 AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~ 82 (109)
T 2hfh_A 15 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ 82 (109)
T ss_dssp HHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCTT
T ss_pred HHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECcc
Confidence 7999999999999999999999999999999999999999999999999976 79999999975
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=99.97 E-value=3.6e-32 Score=192.15 Aligned_cols=61 Identities=46% Similarity=0.914 Sum_probs=57.9
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccc-----cccccccchhhcccCccceeecc---CCCceEEec
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRN-----AATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVD 61 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~-----~~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~ 61 (144)
||++||+++|||+|||+||+++||||+.+ ..|||||||||||+|+||+||++ |||+||+||
T Consensus 17 Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKg~~W~ld 85 (85)
T 3bpy_A 17 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLN 85 (85)
T ss_dssp HHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC
T ss_pred HHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCCCCCCCCceecC
Confidence 78999999999999999999999999986 36999999999999999999987 899999997
No 9
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=99.96 E-value=1.3e-31 Score=197.20 Aligned_cols=64 Identities=44% Similarity=0.855 Sum_probs=58.1
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccc-----cccccccchhhcccCccceeecc---CCCceEEecchh
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRN-----AATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVDEVE 64 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~-----~~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~~~~ 64 (144)
||++||+++|||+|||+||+++||||+.+ ..|||||||||||+|+||+||++ |||+||+|||+.
T Consensus 36 AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKG~~W~l~p~~ 107 (110)
T 3l2c_A 36 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEG 107 (110)
T ss_dssp HHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC---
T ss_pred HHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCCCCCCCceEEECccc
Confidence 79999999999999999999999999986 46999999999999999999986 799999999864
No 10
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=99.96 E-value=1.1e-31 Score=206.98 Aligned_cols=67 Identities=42% Similarity=0.781 Sum_probs=61.0
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCccc-----cccccccchhhcccCccceeecc---CCCceEEecchhhhh
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRN-----AATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVDEVEFYK 67 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~-----~~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~~~~~~~ 67 (144)
||++||+++|||+|||+||+++||||+.+ ..|||||||||||+|+||+||++ |||+||+|||+....
T Consensus 52 AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r~~~GKG~~W~ldp~~~~~ 126 (150)
T 1e17_A 52 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGGKS 126 (150)
T ss_dssp HHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECCTTTSSSCEEEECTTCC--
T ss_pred HHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCCCCCCCcceEEECcccccC
Confidence 79999999999999999999999999976 47999999999999999999986 899999999985443
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.9e-29 Score=193.01 Aligned_cols=64 Identities=41% Similarity=0.831 Sum_probs=60.6
Q ss_pred CCCCCCCCCcCHHHHHHHHHhhcCCCcc-ccccccccchhhcccCccceeec--cCCCceEEecchh
Q psy15601 1 SIIESPDKQLTLNEIYNWFQNTFCYFRR-NAATWKNAVRHNLSLHKCFMRVE--NVKGAVWTVDEVE 64 (144)
Q Consensus 1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~-~~~gWkNSIRHNLS~n~~F~Kv~--rgkg~~W~i~~~~ 64 (144)
||++||+++|||+|||+||+++||||+. +..|||||||||||+|+||+|++ .|||+||+||++.
T Consensus 30 AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~~~~GKg~~W~i~p~~ 96 (142)
T 3g73_A 30 AINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSANGKVSFWTIHPSA 96 (142)
T ss_dssp HHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEECTTSCCEEEEECTTT
T ss_pred HHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecCCCCCCCceEEECccc
Confidence 7999999999999999999999999998 78999999999999999999985 4899999999875
No 12
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=20.96 E-value=20 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.739 Sum_probs=10.7
Q ss_pred cccccccccchhh
Q psy15601 28 RNAATWKNAVRHN 40 (144)
Q Consensus 28 ~~~~gWkNSIRHN 40 (144)
...+.||-|||++
T Consensus 62 ~~sKdWKrSIr~~ 74 (94)
T 1ufn_A 62 ATSKDWKGVIRCN 74 (94)
T ss_dssp TTCSCHHHHCEET
T ss_pred ccccCcceeeEEC
Confidence 4568899999986
No 13
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=20.31 E-value=21 Score=25.05 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.6
Q ss_pred cccccccccchhhcc
Q psy15601 28 RNAATWKNAVRHNLS 42 (144)
Q Consensus 28 ~~~~gWkNSIRHNLS 42 (144)
...+.||-|||++=.
T Consensus 57 ~~sKdWKrSIR~~G~ 71 (95)
T 1h5p_A 57 GASKNWKLSIRCGGY 71 (95)
T ss_dssp STTCCHHHHCEETTE
T ss_pred ccCcCcceeeEECCE
Confidence 456889999998743
Done!