RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15601
(144 letters)
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH
is named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather
than segmental development. This family of
transcription factor domains, which bind to B-DNA as
monomers, are also found in the Hepatocyte nuclear
factor (HNF) proteins, which provide tissue-specific
gene regulation. The structure contains 2 flexible
loops or "wings" in the C-terminal region, hence the
term winged helix.
Length = 78
Score = 101 bits (254), Expect = 3e-29
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 2 IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGA 56
I SP+K+LTL+EIY W + F YFR A W+N++RHNLSL+KCF++V KG+
Sbjct: 14 IQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGS 73
Query: 57 VWTVD 61
WT+D
Sbjct: 74 YWTLD 78
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 99.2 bits (248), Expect = 2e-28
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 2 IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGA 56
I+ SPDK+LTL+EIY W ++ F Y+R N A W+N++RHNLSL+ CF++V KG+
Sbjct: 14 ILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGS 73
Query: 57 VWTVD 61
WT+D
Sbjct: 74 YWTLD 78
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 80.0 bits (198), Expect = 1e-20
Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 2 IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKGA 56
I +SP+K LTL+EIY W + F Y+R+N W+N++RHNLSL+KCF++V + KG+
Sbjct: 14 IQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFIKVPRSPDKPGKGS 73
Query: 57 VWTVDE 62
WT+D
Sbjct: 74 YWTLDP 79
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 57.5 bits (139), Expect = 1e-10
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKG 55
+I+ SPDK LTL++IY W NTF Y+ + + W+N++RHNLSL+ F+++E VKG
Sbjct: 98 AILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKG 157
Query: 56 AVWTVDEVEFYKRRPQRMLSGQ 77
W++ Q + SG
Sbjct: 158 HFWSIGPGHE----TQFLKSGL 175
Score = 54.0 bits (130), Expect = 3e-09
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 2 IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KGA 56
I+ SP ++TL+EIY+W + Y+R W+N++RHNLSL+K F +V KG
Sbjct: 350 ILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGC 409
Query: 57 VWTVDEVEFYKRRPQR 72
W +D Y++ +R
Sbjct: 410 FWKIDYSYIYEKESKR 425
>gnl|CDD|192073 pfam08571, Yos1, Yos1-like. In yeast, Yos1 is a subunit of the
Yip1p-Yif1p complex and is required for transport
between the endoplasmic reticulum and the Golgi complex.
Yos1 appears to be conserved in eukaryotes.
Length = 80
Score = 26.4 bits (59), Expect = 2.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 80 LCTNVLC--DTKTISDRFGWLMMPNSSRDGTSPVADQGSM-TLFLHL-STYRTYLSILLI 135
L N + R GW +S+ G + + S+ + ++L S RT + I LI
Sbjct: 10 LLLNAIAILSEDRFLARIGW---SSSAASGNGGGSSENSIKSQIINLISAVRTLMRIPLI 66
Query: 136 LINL 139
IN+
Sbjct: 67 AINI 70
>gnl|CDD|222627 pfam14254, DUF4348, Domain of unknown function (DUF4348).
Length = 273
Score = 26.9 bits (60), Expect = 4.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 4 ESPDKQLTLNEIYNWFQNTFCYFRRNAATWK 34
+S K L + I N F+ YF+R W+
Sbjct: 241 DSNRKILVVRGIGNGFETIL-YFKRRGGKWQ 270
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 589
Score = 27.0 bits (60), Expect = 4.2
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 84 VLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRT 128
V C + L +PN + DQ + + RT
Sbjct: 499 VYCAEAGNDEFPHELPVPNLLTEHEGKALDQPAGAATPKGFSQRT 543
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 25.8 bits (57), Expect = 8.2
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 47 FMRVENVKGAVWTVDEVEFYKRRPQRML---------SGQTYLCTNVLCDTKTISDRF-- 95
F+++E+ G +++V + Q+M+ S + V+ T T S +
Sbjct: 103 FLKIESELGNHLALNDVTLERDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSL 162
Query: 96 ---GWLMMPNSSRDGTSPVADQ 114
G +++PN +P+A Q
Sbjct: 163 SLGGPIILPNCEVFEITPIAPQ 184
>gnl|CDD|218687 pfam05679, CHGN, Chondroitin N-acetylgalactosaminyltransferase.
Length = 504
Score = 26.2 bits (58), Expect = 8.2
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 42 SLHKCFMRVENVKGAVWTVD-EVEFYKRRPQRM 73
L + R + +G + +D +E+ K R ++M
Sbjct: 186 ELLYGYRRFDPTRGMDYILDLLLEYKKYRGKKM 218
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.424
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,066,486
Number of extensions: 583450
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 16
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.5 bits)