RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15601
         (144 letters)



>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 96.8 bits (241), Expect = 5e-28
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD 61
          I+ES D+QLTLNEIY+WF  TF YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTVD
Sbjct: 15 IMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVD 74

Query: 62 EVEFYKRR 69
          EVE+ KRR
Sbjct: 75 EVEYQKRR 82


>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 81.8 bits (202), Expect = 5e-22
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 13/83 (15%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKGA 56
          I  +PDKQLTLN IY      + Y+R     W+N++RHNLSL++ F++V     E  KG+
Sbjct: 16 ITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGS 75

Query: 57 VWTVD--------EVEFYKRRPQ 71
           W +D        E  F KRRP+
Sbjct: 76 FWRIDPASESKLIEQAFRKRRPR 98


>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 75

 Score = 78.8 bits (194), Expect = 5e-21
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV------KG 55
          I +S   +LTL EI  +    F +FR +   W+N+VRHNLSL+ CF++V         K 
Sbjct: 9  IRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKD 68

Query: 56 AVWTVD 61
            W ++
Sbjct: 69 NYWMLN 74


>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 97

 Score = 79.2 bits (195), Expect = 6e-21
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 12/84 (14%)

Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
          +I++SP K+LTL+ I  +  N F Y+R     W+N++RHNLSL+ CF+++        KG
Sbjct: 14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 73

Query: 56 AVWTVD---EVEF----YKRRPQR 72
            WT+D   E  F    + RR +R
Sbjct: 74 NYWTLDPQSEDMFDNGSFLRRRKR 97


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11
          (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 76.4 bits (188), Expect = 6e-20
 Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KGA 56
          I  +P+K++TLN IY +  + F ++R N   W+N++RHNLSL++CF++V        KG+
Sbjct: 17 IQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGS 76

Query: 57 VWTVDE 62
           WT+D 
Sbjct: 77 YWTLDP 82


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 85

 Score = 74.9 bits (184), Expect = 2e-19
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 8/68 (11%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRV---ENV 53
          I  +P+K+LTL +IY W   T  YF+      ++A WKN++RHNLSLH  F++V      
Sbjct: 18 IESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATG 77

Query: 54 KGAVWTVD 61
          K + W ++
Sbjct: 78 KSSWWMLN 85


>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain
           {Mastadenovirus H2 [TaxId: 10515]}
          Length = 203

 Score = 26.6 bits (59), Expect = 0.96
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 1   SIIESPDKQLTL----NEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHK 45
           S++ SP  Q TL     ++Y++ +    YFR ++A     +R   S   
Sbjct: 155 SMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQ----IRSATSFCH 199


>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor
           tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 181

 Score = 24.0 bits (52), Expect = 6.9
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 84  VLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRTY 129
            L D+ T +   GW++ P S  +  S   +          +T RTY
Sbjct: 4   TLMDSTTATAELGWMVHPPSGWEEVSGYDENM--------NTIRTY 41


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 23.0 bits (49), Expect = 8.3
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 9  QLTLNEIYNWFQNTFCYFRRNAATWKN 35
           +T++++ NWF N    +++N   ++ 
Sbjct: 42 GITVSQVSNWFGNKRIRYKKNIGKFQE 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,206
Number of extensions: 21164
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 20
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (22.9 bits)