BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15602
         (72 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
           E-Cadherin
 pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
           E-cadherin
 pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
           E-cadherin
 pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
           E-cadherin
          Length = 584

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 18/71 (25%)

Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
           E +RVV AA+ ALRNLA+D RNKELI                  GK+A+ +LV+ LP G 
Sbjct: 367 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQ 408

Query: 62  AQHDQGTSDDT 72
                  S+DT
Sbjct: 409 QNSSWNFSEDT 419


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,919,142
Number of Sequences: 62578
Number of extensions: 57781
Number of successful extensions: 123
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 1
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)