BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15602
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UQB3|CTND2_HUMAN Catenin delta-2 OS=Homo sapiens GN=CTNND2 PE=1 SV=3
Length = 1225
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 43/72 (59%), Gaps = 21/72 (29%)
Query: 4 DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQ 63
DRVVCA ATALRN+A+D RNKELI GKYAMRDLV +LP GN
Sbjct: 906 DRVVCAVATALRNMALDVRNKELI------------------GKYAMRDLVHRLPGGNNS 947
Query: 64 HDQGT---SDDT 72
++ + SDDT
Sbjct: 948 NNTASKAMSDDT 959
>sp|Q68FH0|PKP4_MOUSE Plakophilin-4 OS=Mus musculus GN=Pkp4 PE=1 SV=1
Length = 1190
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 18/62 (29%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
M+ DRVV + ATALRN+A+D RNKELI GKYAMRDLV +LP G
Sbjct: 882 MDNDRVVSSVATALRNMALDVRNKELI------------------GKYAMRDLVNRLPGG 923
Query: 61 NA 62
N
Sbjct: 924 NG 925
>sp|Q99569|PKP4_HUMAN Plakophilin-4 OS=Homo sapiens GN=PKP4 PE=1 SV=2
Length = 1192
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 18/62 (29%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
M+ DRVV + ATALRN+A+D RNKELI GKYAMRDLV +LP G
Sbjct: 883 MDNDRVVSSVATALRNMALDVRNKELI------------------GKYAMRDLVNRLPGG 924
Query: 61 NA 62
N
Sbjct: 925 NG 926
>sp|O35927|CTND2_MOUSE Catenin delta-2 OS=Mus musculus GN=Ctnnd2 PE=1 SV=1
Length = 1247
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 41/72 (56%), Gaps = 21/72 (29%)
Query: 4 DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLP---SG 60
DRVVCA ATALRN+A+D RNKELI GKYAMRDLV +LP +
Sbjct: 928 DRVVCAVATALRNMALDVRNKELI------------------GKYAMRDLVHRLPGGNNS 969
Query: 61 NAQHDQGTSDDT 72
N + SDDT
Sbjct: 970 NNSGSKAMSDDT 981
>sp|Q9U308|JAC1_CAEEL Juxtamembrane domain-associated catenin OS=Caenorhabditis elegans
GN=jac-1 PE=1 SV=2
Length = 1254
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 36/69 (52%), Gaps = 18/69 (26%)
Query: 4 DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQ 63
D VVCA ATALRNLAID RN+ELI GKYA+RD + KLP +
Sbjct: 1030 DFVVCAVATALRNLAIDPRNRELI------------------GKYALRDFLDKLPEPGSP 1071
Query: 64 HDQGTSDDT 72
SD T
Sbjct: 1072 RRSAISDQT 1080
>sp|P30999|CTND1_MOUSE Catenin delta-1 OS=Mus musculus GN=Ctnnd1 PE=1 SV=2
Length = 938
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 18/71 (25%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
E +RVV AA+ ALRNLA+D RNKELI GK+A+ +LV+ LP G
Sbjct: 722 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQ 763
Query: 62 AQHDQGTSDDT 72
S+DT
Sbjct: 764 QNSSWNFSEDT 774
>sp|O60716|CTND1_HUMAN Catenin delta-1 OS=Homo sapiens GN=CTNND1 PE=1 SV=1
Length = 968
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 18/71 (25%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
E +RVV AA+ ALRNLA+D RNKELI GK+A+ +LV+ LP G
Sbjct: 722 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQ 763
Query: 62 AQHDQGTSDDT 72
S+DT
Sbjct: 764 QNSSWNFSEDT 774
>sp|P98203|ARVC_MOUSE Armadillo repeat protein deleted in velo-cardio-facial syndrome
homolog OS=Mus musculus GN=Arvcf PE=1 SV=2
Length = 962
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 18/56 (32%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKL 57
E D+VV A A ALRNL++DQRNK+LI G YAM +LV+ +
Sbjct: 722 ETDKVVRAVAIALRNLSLDQRNKDLI------------------GSYAMTELVRNV 759
>sp|O00192|ARVC_HUMAN Armadillo repeat protein deleted in velo-cardio-facial syndrome
OS=Homo sapiens GN=ARVCF PE=1 SV=1
Length = 962
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAF 30
E D+VV A A ALRNL++D+RNK+LI ++
Sbjct: 721 ETDKVVRAVAIALRNLSLDRRNKDLIGSY 749
>sp|Q8AXM9|CTND1_XENLA Catenin delta-1 OS=Xenopus laevis GN=ctnnd1 PE=1 SV=1
Length = 859
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEAN 33
E +RVV A ALRNL D RN+ELI N
Sbjct: 643 ESERVVRAICGALRNLCGDNRNRELIGKHALN 674
>sp|P54662|DEGU_BREBE Transcriptional regulatory protein DegU OS=Brevibacillus brevis
GN=degU PE=3 SV=1
Length = 236
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 25 ELIDAFEANLILIELNLSPPAGKYAMRDLVQKLP 58
EL++ + ++IL+++N+ G A RDL+Q+ P
Sbjct: 49 ELVEKYNPDVILMDINMPKVNGVEATRDLIQRYP 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,762,130
Number of Sequences: 539616
Number of extensions: 750131
Number of successful extensions: 1936
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 14
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)