Query psy15602
Match_columns 72
No_of_seqs 61 out of 63
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 16:53:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1048|consensus 99.5 1.5E-14 3.2E-19 120.6 3.1 52 1-72 577-628 (717)
2 smart00185 ARM Armadillo/beta- 89.7 0.38 8.2E-06 24.2 2.2 17 2-18 24-40 (41)
3 PF00514 Arm: Armadillo/beta-c 85.1 1.1 2.4E-05 23.6 2.4 17 2-18 24-40 (41)
4 cd00020 ARM Armadillo/beta-cat 72.5 7.3 0.00016 22.4 3.4 21 2-22 61-81 (120)
5 PF04826 Arm_2: Armadillo-like 56.5 13 0.00028 27.5 2.9 24 4-27 109-132 (254)
6 PF05804 KAP: Kinesin-associat 55.3 21 0.00047 30.6 4.3 27 2-28 302-328 (708)
7 TIGR00094 tRNA_TruD_broad tRNA 54.9 3 6.5E-05 31.9 -0.7 19 37-55 362-383 (387)
8 PRK00984 truD tRNA pseudouridi 54.3 3.1 6.8E-05 32.0 -0.7 19 37-55 317-338 (341)
9 KOG4646|consensus 51.4 18 0.00038 26.9 2.9 27 2-28 70-96 (173)
10 cd02576 PseudoU_synth_ScPUS7 P 51.4 5.1 0.00011 30.5 0.1 17 37-53 351-370 (371)
11 PF04063 DUF383: Domain of unk 46.0 18 0.00038 26.0 2.1 20 8-27 121-140 (192)
12 cd07909 YciF YciF bacterial st 43.4 92 0.002 21.6 5.3 47 10-56 18-77 (147)
13 KOG4224|consensus 42.9 21 0.00046 30.3 2.4 28 2-29 263-290 (550)
14 cd02575 PseudoU_synth_EcTruD P 42.9 5.2 0.00011 30.1 -1.0 17 37-53 233-252 (253)
15 cd02552 PseudoU_synth_TruD_lik 35.5 13 0.00028 27.3 0.1 17 37-53 212-231 (232)
16 KOG1048|consensus 33.5 30 0.00064 30.3 1.9 22 2-23 287-308 (717)
17 PF05804 KAP: Kinesin-associat 30.8 77 0.0017 27.3 3.9 27 2-28 343-369 (708)
18 PF12290 DUF3802: Protein of u 29.8 73 0.0016 22.2 3.0 33 25-57 10-42 (113)
19 PF11320 DUF3122: Protein of u 28.0 49 0.0011 23.3 2.0 29 33-61 77-105 (134)
20 PF07565 Band_3_cyto: Band 3 c 27.8 75 0.0016 23.8 3.0 42 5-48 208-254 (257)
21 PF04826 Arm_2: Armadillo-like 27.2 99 0.0021 22.9 3.6 33 3-35 67-99 (254)
22 KOG4500|consensus 26.6 46 0.001 28.8 1.9 25 3-27 374-398 (604)
23 KOG4224|consensus 24.6 97 0.0021 26.5 3.4 27 2-28 346-373 (550)
24 PF08919 F_actin_bind: F-actin 24.4 1.2E+02 0.0025 20.6 3.2 22 37-58 51-72 (110)
25 COG4704 Uncharacterized protei 22.7 20 0.00044 26.1 -0.7 11 42-52 83-93 (151)
26 PF09912 DUF2141: Uncharacteri 21.8 24 0.00053 22.9 -0.5 10 42-51 49-58 (112)
27 COG2093 DNA-directed RNA polym 21.7 18 0.0004 23.1 -1.0 8 44-51 55-62 (64)
28 PF14347 DUF4399: Domain of un 20.7 19 0.00042 23.1 -1.1 16 38-53 54-69 (87)
29 PF08664 YcbB: YcbB domain; I 20.2 92 0.002 21.7 2.1 15 4-18 69-83 (134)
No 1
>KOG1048|consensus
Probab=99.48 E-value=1.5e-14 Score=120.57 Aligned_cols=52 Identities=54% Similarity=0.693 Sum_probs=48.6
Q ss_pred CCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhCCCCCCCCCCCCCCCC
Q psy15602 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQHDQGTSDDT 72 (72)
Q Consensus 1 m~~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kLP~~~~~~~~~lsddT 72 (72)
+++|+|||+++++||||++|.|||++| |||||+|||.+||++++ .+.+||||
T Consensus 577 ~~~~~vv~s~a~~LrNls~d~rnk~li------------------gk~a~~~lv~~Lp~~~~--~~~~sedt 628 (717)
T KOG1048|consen 577 NDDSDVVRSAAGALRNLSRDIRNKELI------------------GKYAIPDLVRCLPGSGP--STSLSEDT 628 (717)
T ss_pred cCCchHHHHHHHHHhhhccCchhhhhh------------------hcchHHHHHHhCcCCCC--CcCchHHH
Confidence 478999999999999999999999999 99999999999999888 46888886
No 2
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=89.67 E-value=0.38 Score=24.19 Aligned_cols=17 Identities=53% Similarity=0.476 Sum_probs=15.1
Q ss_pred CchHHHHHHHHHHHhhh
Q psy15602 2 EVDRVVCAAATALRNLA 18 (72)
Q Consensus 2 ~~drVv~a~ataLRNLA 18 (72)
+++++++.++.+||||+
T Consensus 24 ~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 24 EDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 46789999999999997
No 3
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=85.09 E-value=1.1 Score=23.65 Aligned_cols=17 Identities=47% Similarity=0.239 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHHHhhh
Q psy15602 2 EVDRVVCAAATALRNLA 18 (72)
Q Consensus 2 ~~drVv~a~ataLRNLA 18 (72)
+++.|.+.++.||+||+
T Consensus 24 ~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 24 PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 46788999999999997
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=72.52 E-value=7.3 Score=22.43 Aligned_cols=21 Identities=52% Similarity=0.457 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHhhhhhhh
Q psy15602 2 EVDRVVCAAATALRNLAIDQR 22 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAlD~R 22 (72)
++.+|...++.+|+||+.+..
T Consensus 61 ~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 61 EDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred CCHHHHHHHHHHHHHHccCcH
Confidence 357899999999999998773
No 5
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=56.48 E-value=13 Score=27.52 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHH
Q psy15602 4 DRVVCAAATALRNLAIDQRNKELI 27 (72)
Q Consensus 4 drVv~a~ataLRNLAlD~RNKeLI 27 (72)
..+-.+.-.+|+||++...++.++
T Consensus 109 s~~Q~agLrlL~nLtv~~~~~~~l 132 (254)
T PF04826_consen 109 SEVQLAGLRLLTNLTVTNDYHHML 132 (254)
T ss_pred CHHHHHHHHHHHccCCCcchhhhH
Confidence 355677889999999999998888
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=55.33 E-value=21 Score=30.58 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHHhhhhhhhhHHHHH
Q psy15602 2 EVDRVVCAAATALRNLAIDQRNKELID 28 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAlD~RNKeLI~ 28 (72)
++..+.+.+.+.|++||+...||+.|.
T Consensus 302 ~n~ellil~v~fLkkLSi~~ENK~~m~ 328 (708)
T PF05804_consen 302 ENEELLILAVTFLKKLSIFKENKDEMA 328 (708)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455688899999999999999999993
No 7
>TIGR00094 tRNA_TruD_broad tRNA pseudouridine synthase, TruD family. MJ11364 is a strong partial match from 50 to 230 aa.
Probab=54.92 E-value=3 Score=31.86 Aligned_cols=19 Identities=47% Similarity=0.964 Sum_probs=16.7
Q ss_pred HHhhCCCCchhhh---HHHHhh
Q psy15602 37 IELNLSPPAGKYA---MRDLVQ 55 (72)
Q Consensus 37 ~~~~~~~~~GkyA---mrdLV~ 55 (72)
+.++|+||+|-|| ||+|+.
T Consensus 362 l~l~F~LP~GsYAT~vLREl~k 383 (387)
T TIGR00094 362 VELKFYLPAGSYATSVLRELIK 383 (387)
T ss_pred EEEEEEeCCchhHHHHHHHHHh
Confidence 6789999999999 888876
No 8
>PRK00984 truD tRNA pseudouridine synthase D; Reviewed
Probab=54.30 E-value=3.1 Score=31.99 Aligned_cols=19 Identities=42% Similarity=0.864 Sum_probs=16.4
Q ss_pred HHhhCCCCchhhh---HHHHhh
Q psy15602 37 IELNLSPPAGKYA---MRDLVQ 55 (72)
Q Consensus 37 ~~~~~~~~~GkyA---mrdLV~ 55 (72)
+.++|+||+|.|| +|+|+.
T Consensus 317 l~l~F~Lp~GsYAT~lLREl~~ 338 (341)
T PRK00984 317 LELEFWLPKGSYATSVLRELLK 338 (341)
T ss_pred EEEEEEeCCchhHHHHHHHHhc
Confidence 5788999999999 788876
No 9
>KOG4646|consensus
Probab=51.45 E-value=18 Score=26.93 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHhhhhhhhhHHHHH
Q psy15602 2 EVDRVVCAAATALRNLAIDQRNKELID 28 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAlD~RNKeLI~ 28 (72)
+|...|--..++|.|+..|..|++.|.
T Consensus 70 ~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 70 QNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred ccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 355667777899999999999999994
No 10
>cd02576 PseudoU_synth_ScPUS7 PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=51.44 E-value=5.1 Score=30.53 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=13.7
Q ss_pred HHhhCCCCchhhh---HHHH
Q psy15602 37 IELNLSPPAGKYA---MRDL 53 (72)
Q Consensus 37 ~~~~~~~~~GkyA---mrdL 53 (72)
+.++|+||+|-|| ||+|
T Consensus 351 l~l~F~Lp~GsYAT~~LREl 370 (371)
T cd02576 351 LKLKFSLPSSSYATMALREL 370 (371)
T ss_pred EEEEEEcCchhHHHHHHHhh
Confidence 4678999999999 6665
No 11
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=46.04 E-value=18 Score=25.97 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhhhhHHHH
Q psy15602 8 CAAATALRNLAIDQRNKELI 27 (72)
Q Consensus 8 ~a~ataLRNLAlD~RNKeLI 27 (72)
+.|+++|||.++|....+.+
T Consensus 121 ~Gva~~IrNccFd~~~H~~L 140 (192)
T PF04063_consen 121 GGVAGTIRNCCFDTDSHEWL 140 (192)
T ss_pred HHHHHHHHHhhccHhHHHHh
Confidence 46899999999999998776
No 12
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=43.42 E-value=92 Score=21.57 Aligned_cols=47 Identities=32% Similarity=0.429 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHH------------HHHhhCCCCchh-hhHHHHhhh
Q psy15602 10 AATALRNLAIDQRNKELIDAFEANLI------------LIELNLSPPAGK-YAMRDLVQK 56 (72)
Q Consensus 10 ~ataLRNLAlD~RNKeLI~~~~~~~~------------~~~~~~~~~~Gk-yAmrdLV~k 56 (72)
+..+|.-|+.-..+.+|-.+|+.|+. |-.+..+|+..| .+|..||..
T Consensus 18 ~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e 77 (147)
T cd07909 18 LVKALPKMAKAATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKE 77 (147)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHH
Confidence 45788999999999999999999864 445778888888 888888753
No 13
>KOG4224|consensus
Probab=42.94 E-value=21 Score=30.31 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy15602 2 EVDRVVCAAATALRNLAIDQRNKELIDA 29 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAlD~RNKeLI~~ 29 (72)
..|+|.|-++.||||+|-|.+-+.-|++
T Consensus 263 ~s~kvkcqA~lALrnlasdt~Yq~eiv~ 290 (550)
T KOG4224|consen 263 GSDKVKCQAGLALRNLASDTEYQREIVE 290 (550)
T ss_pred CChHHHHHHHHHHhhhcccchhhhHHHh
Confidence 4689999999999999999988777643
No 14
>cd02575 PseudoU_synth_EcTruD PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD makes the highly phylogenetically conserved psi13 in tRNAs.
Probab=42.90 E-value=5.2 Score=30.09 Aligned_cols=17 Identities=53% Similarity=0.983 Sum_probs=13.6
Q ss_pred HHhhCCCCchhhh---HHHH
Q psy15602 37 IELNLSPPAGKYA---MRDL 53 (72)
Q Consensus 37 ~~~~~~~~~GkyA---mrdL 53 (72)
++++|.+|+|-|| ||+|
T Consensus 233 ~~l~f~lp~g~~at~~l~e~ 252 (253)
T cd02575 233 LELSFYLPAGSYATSVLREL 252 (253)
T ss_pred EEEEEEeCCCchHHHHHHHh
Confidence 5689999999999 5554
No 15
>cd02552 PseudoU_synth_TruD_like PseudoU_synth_TruD_like: Pseudouridine synthase, TruD family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruD and Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD and S. cerevisiae Pus7 make psi13 in cytoplasmic tRNAs. In addition S. cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA) and psi35 in pre-tRNATyr. Psi35 in U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=35.54 E-value=13 Score=27.34 Aligned_cols=17 Identities=47% Similarity=0.958 Sum_probs=13.5
Q ss_pred HHhhCCCCchhhh---HHHH
Q psy15602 37 IELNLSPPAGKYA---MRDL 53 (72)
Q Consensus 37 ~~~~~~~~~GkyA---mrdL 53 (72)
+.++|+||+|-|| +|+|
T Consensus 212 ~~l~F~Lp~g~YAT~~lREl 231 (232)
T cd02552 212 LKLSFSLPRGSYATMVLREL 231 (232)
T ss_pred EEEEEEcCCchHHHHHHHHh
Confidence 4678999999999 5554
No 16
>KOG1048|consensus
Probab=33.53 E-value=30 Score=30.28 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.0
Q ss_pred CchHHHHHHHHHHHhhhhhhhh
Q psy15602 2 EVDRVVCAAATALRNLAIDQRN 23 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAlD~RN 23 (72)
.++.|.+.+++|||||.+..-+
T Consensus 287 ~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 287 RNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred CcHHHHHHHHHHHHhhhcccCC
Confidence 4688999999999999987765
No 17
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=30.76 E-value=77 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHhhhhhhhhHHHHH
Q psy15602 2 EVDRVVCAAATALRNLAIDQRNKELID 28 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAlD~RNKeLI~ 28 (72)
++..++..+..+|.|||+|..++..|.
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456678888899999999999998884
No 18
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=29.78 E-value=73 Score=22.20 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhC
Q psy15602 25 ELIDAFEANLILIELNLSPPAGKYAMRDLVQKL 57 (72)
Q Consensus 25 eLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kL 57 (72)
.||.-|-.|+.+.+.+-+.++|.+-+.|+|.-+
T Consensus 10 ~LI~yLte~L~lFe~~~~~~~~~~Tv~d~vee~ 42 (113)
T PF12290_consen 10 ALIEYLTENLSLFESSQSGDTGDETVEDVVEEQ 42 (113)
T ss_pred HHHHHHHHhHHHhcCCCCCCcccchHHHHHHHH
Confidence 588889999999999999999999999998754
No 19
>PF11320 DUF3122: Protein of unknown function (DUF3122); InterPro: IPR021469 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=28.00 E-value=49 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=25.1
Q ss_pred HHHHHHhhCCCCchhhhHHHHhhhCCCCC
Q psy15602 33 NLILIELNLSPPAGKYAMRDLVQKLPSGN 61 (72)
Q Consensus 33 ~~~~~~~~~~~~~GkyAmrdLV~kLP~~~ 61 (72)
.-.|.+.+..+..|.|.+.+|+.+|+.+.
T Consensus 77 ~d~~~~~~~~~nvgqydl~plL~~L~~~~ 105 (134)
T PF11320_consen 77 EDVFLDEDPRPNVGQYDLKPLLPQLSSNR 105 (134)
T ss_pred CChHHhhCcCccccccccHhHHhhCCCCC
Confidence 44567889999999999999999999775
No 20
>PF07565 Band_3_cyto: Band 3 cytoplasmic domain; InterPro: IPR013769 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains.; GO: 0008509 anion transmembrane transporter activity, 0006820 anion transport, 0016021 integral to membrane; PDB: 1HYN_Q.
Probab=27.80 E-value=75 Score=23.85 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHHHHHHHH-----HhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhh
Q psy15602 5 RVVCAAATAL-----RNLAIDQRNKELIDAFEANLILIELNLSPPAGKY 48 (72)
Q Consensus 5 rVv~a~ataL-----RNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~Gky 48 (72)
.+=||+||.+ ++.|...++++.+ +.+=-.|+.-++-+|||++
T Consensus 208 eiGR~~atlmsd~~F~~~ay~a~~r~dl--~~~id~Fl~~~iVlPPg~~ 254 (257)
T PF07565_consen 208 EIGRAIATLMSDEVFHDVAYKAKSREDL--LAGIDEFLDDSIVLPPGEW 254 (257)
T ss_dssp HHHHHHHHHHTSHHHHHHHHH-SSHHHH--HHHHHHHHHT-EEE-S--S
T ss_pred ccchhhhhhhccHHHHHHHHHcCCHHHH--HHHHHHHhcCceecCCcCC
Confidence 3446666654 6777788888776 5677789999999999985
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=27.24 E-value=99 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy15602 3 VDRVVCAAATALRNLAIDQRNKELIDAFEANLI 35 (72)
Q Consensus 3 ~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~ 35 (72)
+..|..-+..||-|||.+..|++.|..+..+.-
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc 99 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDENQEQIKMYIPQVC 99 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 345555678899999999999999976654433
No 22
>KOG4500|consensus
Probab=26.60 E-value=46 Score=28.76 Aligned_cols=25 Identities=36% Similarity=0.263 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHhhhhhhhhHHHH
Q psy15602 3 VDRVVCAAATALRNLAIDQRNKELI 27 (72)
Q Consensus 3 ~drVv~a~ataLRNLAlD~RNKeLI 27 (72)
|=+++-|+..||||++|-.-||...
T Consensus 374 nV~~qhA~lsALRnl~IPv~nka~~ 398 (604)
T KOG4500|consen 374 NVERQHACLSALRNLMIPVSNKAHF 398 (604)
T ss_pred cchhHHHHHHHHHhccccCCchhhc
Confidence 3467789999999999999999765
No 23
>KOG4224|consensus
Probab=24.61 E-value=97 Score=26.50 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHhhhh-hhhhHHHHH
Q psy15602 2 EVDRVVCAAATALRNLAI-DQRNKELID 28 (72)
Q Consensus 2 ~~drVv~a~ataLRNLAl-D~RNKeLI~ 28 (72)
|++...|.+...|||||- ..+|+..|-
T Consensus 346 dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 346 DNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred CchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 567789999999999999 778988884
No 24
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=24.41 E-value=1.2e+02 Score=20.59 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=16.0
Q ss_pred HHhhCCCCchhhhHHHHhhhCC
Q psy15602 37 IELNLSPPAGKYAMRDLVQKLP 58 (72)
Q Consensus 37 ~~~~~~~~~GkyAmrdLV~kLP 58 (72)
++-+..+|-+|++.|++|+||=
T Consensus 51 yaD~~~~p~~KF~FREllsrLE 72 (110)
T PF08919_consen 51 YADSIIQPHAKFAFRELLSRLE 72 (110)
T ss_dssp HGGG-S-CCCHHHHHHHHHHHH
T ss_pred HHHcCcCcchhhhHHHHHHHHH
Confidence 4444677789999999999983
No 25
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.69 E-value=20 Score=26.14 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=8.9
Q ss_pred CCCchhhhHHH
Q psy15602 42 SPPAGKYAMRD 52 (72)
Q Consensus 42 ~~~~GkyAmrd 52 (72)
-++||+||++-
T Consensus 83 ~Lk~G~YAvaa 93 (151)
T COG4704 83 GLKPGKYAVAA 93 (151)
T ss_pred cCCCccEEEEE
Confidence 57999999763
No 26
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=21.76 E-value=24 Score=22.91 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=8.4
Q ss_pred CCCchhhhHH
Q psy15602 42 SPPAGKYAMR 51 (72)
Q Consensus 42 ~~~~GkyAmr 51 (72)
.+|||+||+.
T Consensus 49 ~lp~G~YAi~ 58 (112)
T PF09912_consen 49 DLPPGTYAIA 58 (112)
T ss_pred CCCCccEEEE
Confidence 6899999964
No 27
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=21.68 E-value=18 Score=23.09 Aligned_cols=8 Identities=63% Similarity=1.049 Sum_probs=6.3
Q ss_pred CchhhhHH
Q psy15602 44 PAGKYAMR 51 (72)
Q Consensus 44 ~~GkyAmr 51 (72)
-|||||++
T Consensus 55 ~Pg~yAl~ 62 (64)
T COG2093 55 IPGKYALR 62 (64)
T ss_pred CCceEEEE
Confidence 47999975
No 28
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=20.68 E-value=19 Score=23.05 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=12.3
Q ss_pred HhhCCCCchhhhHHHH
Q psy15602 38 ELNLSPPAGKYAMRDL 53 (72)
Q Consensus 38 ~~~~~~~~GkyAmrdL 53 (72)
++++.|+||||-+.-+
T Consensus 54 e~~I~L~PG~htLtl~ 69 (87)
T PF14347_consen 54 ELNIELPPGKHTLTLQ 69 (87)
T ss_pred EEEEEeCCCCEEEEEE
Confidence 5678899999987533
No 29
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=20.18 E-value=92 Score=21.69 Aligned_cols=15 Identities=47% Similarity=0.492 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHhhh
Q psy15602 4 DRVVCAAATALRNLA 18 (72)
Q Consensus 4 drVv~a~ataLRNLA 18 (72)
-|+-||+..||-|||
T Consensus 69 QRIRRai~~al~nlA 83 (134)
T PF08664_consen 69 QRIRRAIKQALTNLA 83 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 378899999999997
Done!