RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15602
(72 letters)
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 43.0 bits (100), Expect = 9e-07
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 18/72 (25%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
E +RVV AA+ ALRNLA+D RNKELI GK+A+ +LV+ LP G
Sbjct: 366 NEHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGG 407
Query: 61 NAQHDQGTSDDT 72
S+DT
Sbjct: 408 QQNSSWNFSEDT 419
Score = 26.1 bits (56), Expect = 1.00
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 2 EVDRVVCAAATALRNLAI--DQRNKELIDAFEANLILIEL 39
V A AL+N++ DQ NK I + L+ L
Sbjct: 102 PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141
Score = 23.8 bits (50), Expect = 8.3
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 4 DRVVCAAATALRNLAI-DQRNKELIDAFEANLILIEL 39
D V AA L++L + + K + + +L+ L
Sbjct: 62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL 98
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 36.0 bits (82), Expect = 3e-04
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 18/63 (28%)
Query: 4 DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQ 63
VV + A+ L N++ ++ G ++ + L S
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVM------------------GNQVFPEVTRLLTSHTGN 386
Query: 64 HDQ 66
Sbjct: 387 TSN 389
Score = 24.0 bits (51), Expect = 4.8
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 6 VVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAG 46
+ L NL+ KE + A +A +L + + P +G
Sbjct: 103 IQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSG 142
Score = 24.0 bits (51), Expect = 5.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 6 VVCAAATALRNLAIDQRNKELI 27
V A LRNL+ ++ +
Sbjct: 159 VFFNATGCLRNLSSADAGRQTM 180
Score = 23.6 bits (50), Expect = 7.7
Identities = 12/44 (27%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 2 EVDRVVCAAATALRNLAI-DQRNKELIDAFEANLILIELNLSPP 44
V AAA ALRNL NK + L
Sbjct: 56 PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG 99
Score = 23.3 bits (49), Expect = 9.1
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 6 VVCAAATALRNLAI-DQRNKELIDAFEANLILIEL 39
A +++ D+ K+ + L++L
Sbjct: 18 YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDL 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 29.6 bits (66), Expect = 0.065
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++ + AA L LA D+ E I+A A L EL
Sbjct: 604 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Score = 26.9 bits (59), Expect = 0.47
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
+ ++ +V A AL LA D N+ +I + ++L
Sbjct: 563 VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQL 601
Score = 26.5 bits (58), Expect = 0.62
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++++ + L+ L++ NK I L
Sbjct: 331 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 368
Score = 25.0 bits (54), Expect = 2.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 6 VVCAAATALRNLAIDQRNKELI 27
VV AA + L+ + ++ I
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAI 187
Score = 23.8 bits (51), Expect = 6.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 6 VVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++ A +RNLA+ N + A L++L
Sbjct: 505 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Score = 23.5 bits (50), Expect = 9.8
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 6 VVCAAATALRNLAIDQRNKELI 27
+ L NL+ + I
Sbjct: 209 TARCTSGTLHNLSHHREGLLAI 230
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 29.1 bits (65), Expect = 0.086
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++ + AA L LA D+ E I+A A L EL
Sbjct: 468 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 506
Score = 26.8 bits (59), Expect = 0.59
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++++ + L+ L++ NK I L
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232
Score = 26.4 bits (58), Expect = 0.68
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
+ ++ +V AL LA D N+ +I + ++L
Sbjct: 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 465
Score = 24.5 bits (53), Expect = 3.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 6 VVCAAATALRNLAIDQRNKELI 27
VV AA + L+ + ++ I
Sbjct: 30 VVNKAAVMVHQLSKKEASRHAI 51
Score = 24.5 bits (53), Expect = 3.9
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 5 RVVCAAATALRNLAIDQRNKELIDAFEANLI--LIEL 39
A L NL+ + I F++ I L+++
Sbjct: 72 ETARCTAGTLHNLSHHREGLLAI--FKSGGIPALVKM 106
Score = 23.7 bits (51), Expect = 6.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 9 AAATALRNLAIDQRNKELIDAFEANLILIEL 39
A +RNLA+ N + A L++L
Sbjct: 372 ATVGLIRNLALCPANHAPLREQGAIPRLVQL 402
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 28.6 bits (64), Expect = 0.12
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++ + AA L LA D+ E I+A A L EL
Sbjct: 471 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509
Score = 26.3 bits (58), Expect = 0.72
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++++ + L+ L++ NK I L
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235
Score = 25.5 bits (56), Expect = 1.4
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
+ ++ +V AL LA D N+ +I + ++L
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468
Score = 25.1 bits (55), Expect = 2.1
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 5 RVVCAAATALRNLAIDQRNKELIDAFEANLI--LIEL 39
A L NL+ + I F++ I L+++
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAI--FKSGGIPALVKM 109
Score = 24.0 bits (52), Expect = 5.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 6 VVCAAATALRNLAIDQRNKELI 27
VV AA + L+ + ++ I
Sbjct: 33 VVNKAAVMVHQLSKKEASRHAI 54
Score = 24.0 bits (52), Expect = 5.0
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 4 DRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
++ A +RNLA+ N + A L++L
Sbjct: 370 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 28.4 bits (63), Expect = 0.14
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
V+ +C A L L+ D+ ++ ++ + EL
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAEL 197
Score = 26.5 bits (58), Expect = 0.82
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 4 DRVVCAAATALRNLAIDQRNKE 25
+ +A ALRNL ++ K
Sbjct: 435 KMIAMGSAAALRNLMANRPAKY 456
Score = 25.7 bits (56), Expect = 1.3
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 4 DRVVCAAATALRNL-AIDQRNKELIDAFEANLILIEL 39
+V A L NL A + +++E + A +L L
Sbjct: 393 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429
Score = 25.3 bits (55), Expect = 1.7
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 4 DRVVCAAATALRNLAI--DQRNKELIDAFEANLILIELNLSPP 44
+ + A+ LRNL+ D +K+ + + L+E L
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299
Score = 23.4 bits (50), Expect = 8.1
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 4 DRVVCAAATALRNLAIDQRN--KELIDAFEANLILIEL 39
+ + + +AL NL+ ++ A L+
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338
Score = 23.4 bits (50), Expect = 8.6
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 5 RVVCAAATALRNLAI-DQRNKELIDAFE 31
+ A AL NL D NK + + +
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMK 242
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 27.6 bits (61), Expect = 0.27
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 4 DRVVCAAATALRNLAI-DQRNKELIDAFEANLILIEL 39
+ V A ALRNL D NK + L+++
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQV 102
Score = 24.5 bits (53), Expect = 3.8
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 2 EVDRVVCAAATALRNLAI-DQRNKELIDAFEANLILIEL 39
+ + AAAT +++ ++ ++ L L++L
Sbjct: 22 MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 27.5 bits (61), Expect = 0.29
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 4 DRVVCAAATALRNLAIDQRNKELI 27
+ +C A L L+ D+ ++ +
Sbjct: 46 EHQICPAVCVLMKLSFDEEHRHAM 69
Score = 26.3 bits (58), Expect = 0.70
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 4 DRVVCAAATALRNL-AIDQRNKELIDAFEANLILIEL 39
+V A L NL A + +++E + A +L L
Sbjct: 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313
Score = 26.3 bits (58), Expect = 0.80
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 4 DRVVCAAATALRNLAIDQRNKELI 27
+ +A ALRNL ++ K
Sbjct: 319 KMIAMGSAAALRNLMANRPAKYKD 342
Score = 25.2 bits (55), Expect = 2.1
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 6 VVCAAATALRNLAI--DQRNKELIDAFEANLILIELNLSPP 44
+ A+ LRNL+ D +K+ + + L+E L
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183
Score = 24.4 bits (53), Expect = 4.4
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 5 RVVCAAATALRNLAI-DQRNKELIDAFEANL-ILIELNLSP 43
+ A AL NL D NK + + + + L+ S
Sbjct: 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139
Score = 23.7 bits (51), Expect = 7.1
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 5 RVVCAAATALRNLAIDQRN--KELIDAFEANLILIEL 39
+ + +AL NL+ ++ A L+
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.0
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 24 KELIDAFEANLILIELNLSPPAGKYAMRDLVQ 55
K+ + +A+L L + S PA A++ ++
Sbjct: 19 KQALKKLQASLKLYADD-SAPA--LAIKATME 47
>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc,
core protein, RNA-binding, icosaderal virus; 3.80A
{Rotavirus A} PDB: 3kz4_A 3n09_A
Length = 800
Score = 25.1 bits (54), Expect = 2.1
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
++ V A R ++ K +++ F L + ++ P Y +RD ++ LP
Sbjct: 537 RINDAVAIITAANRLNLYQKKMKAIVEDFLKRLHIFDVARVPDDQMYRLRDRLRLLPVEV 596
Query: 62 AQHD 65
+ D
Sbjct: 597 RRLD 600
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.4
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 15 RNLAI--DQRNKELIDAFEANL---ILI 37
L + + +N + +AF NL IL+
Sbjct: 245 NCLLVLLNVQNAKAWNAF--NLSCKILL 270
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 24.6 bits (54), Expect = 3.7
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 2 EVDRVVCAAATALRNLAIDQ-RNKELIDAFEANLILIEL 39
++++ A AL N+A + + A L++L
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Score = 23.8 bits (52), Expect = 6.9
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 4 DRVVCAAATALRNLAIDQRNKELIDA-FEANLI--LIEL 39
++++ A AL N+A E I A +A + L++L
Sbjct: 110 EQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQL 146
Score = 23.0 bits (50), Expect = 10.0
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 4 DRVVCAAATALRNLA-IDQRNKELIDAFEANLILIELNLSP 43
++++ A AL N+A K+ + A L +L
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat
motif, de novo protein; 1.80A {Synthetic construct}
PDB: 4db9_A 4dba_A
Length = 210
Score = 23.7 bits (52), Expect = 6.4
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 4 DRVVCAAATALRNLAIDQRNK 24
++++ A AL N+A +
Sbjct: 68 EQILQEALWALSNIASGGNEQ 88
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET:
EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A*
2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A*
2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Length = 428
Score = 23.8 bits (52), Expect = 6.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 37 IELNLSPPAGKYAMRDLVQK 56
IEL++ P GK + +++K
Sbjct: 70 IELDMKTPEGKELLEQMIKK 89
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear
protein, protein transport, armadillo repeats; 2.2A
{Homo sapiens} PDB: 3tj3_A
Length = 450
Score = 23.7 bits (51), Expect = 7.0
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
+ +A R L + N + + ++
Sbjct: 32 KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARF 69
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 23.4 bits (51), Expect = 8.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 37 IELNLSPPAGKYAMRDLVQK 56
+ELN P GK ++
Sbjct: 96 VELNTKTPEGKAVFEKCIKW 115
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined
dimer, PSI, protein structu initiative; HET: MSE; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A*
1pt7_A 1pt5_A 1pt8_A*
Length = 428
Score = 23.3 bits (51), Expect = 8.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 37 IELNLSPPAGKYAMRDLVQK 56
IELN GK M L+++
Sbjct: 72 IELNTKTAEGKEVMEKLIRE 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.361
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,059,578
Number of extensions: 51883
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 82
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)