RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15602
         (72 letters)



>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 529

 Score = 35.6 bits (80), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
            ++ +   AA  L  LA D+   E I+A  A   L EL
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509



 Score = 25.2 bits (53), Expect = 0.81
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
            ++ +V     AL  LA D  N+ +I       + ++L
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468


>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 457

 Score = 23.2 bits (48), Expect = 3.8
 Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 18/65 (27%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
                VV + A+ L N++       ++                  G     ++ + L S 
Sbjct: 342 SGNSDVVRSGASLLSNMSRHPLLHRVM------------------GNQVFPEVTRLLTSH 383

Query: 61  NAQHD 65
                
Sbjct: 384 TGNTS 388



 Score = 23.2 bits (48), Expect = 4.1
 Identities = 3/24 (12%), Positives = 10/24 (41%)

Query: 4   DRVVCAAATALRNLAIDQRNKELI 27
            +   AA   L ++   +  + ++
Sbjct: 434 PKAAEAARLLLSDMWSSKELQGVL 457



 Score = 22.9 bits (47), Expect = 5.8
 Identities = 12/42 (28%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 4  DRVVCAAATALRNLAIDQR-NKELIDAFEANLILIELNLSPP 44
            V  AAA ALRNL      NK            + L     
Sbjct: 58 QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0369    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,719
Number of extensions: 8447
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 7
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.9 bits)