Query psy15604
Match_columns 986
No_of_seqs 480 out of 3434
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 16:56:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 6.8E-56 1.5E-60 540.0 76.5 786 3-913 14-884 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.3E-55 2.9E-60 537.4 67.5 800 77-978 13-868 (2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 2.6E-51 5.7E-56 399.6 22.1 390 494-890 72-498 (526)
4 KOG0166|consensus 100.0 1.2E-48 2.6E-53 416.4 26.6 387 495-890 68-488 (514)
5 KOG1048|consensus 100.0 3.2E-34 6.9E-39 315.3 18.9 347 575-960 231-620 (717)
6 KOG4224|consensus 100.0 2.2E-31 4.8E-36 262.8 24.0 401 77-565 85-493 (550)
7 KOG4224|consensus 100.0 9.5E-31 2.1E-35 258.3 27.6 438 79-650 49-495 (550)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.3E-29 2.9E-34 248.1 16.3 295 487-783 108-410 (526)
9 KOG0166|consensus 100.0 1.9E-26 4E-31 247.0 32.4 396 249-767 68-482 (514)
10 PF05804 KAP: Kinesin-associat 100.0 3.8E-24 8.3E-29 243.4 45.5 395 166-650 253-651 (708)
11 PF05804 KAP: Kinesin-associat 99.9 3.1E-22 6.7E-27 227.9 44.5 524 122-780 124-658 (708)
12 KOG1048|consensus 99.8 7.2E-18 1.6E-22 186.9 24.6 441 206-706 234-699 (717)
13 KOG4500|consensus 99.8 1.1E-16 2.4E-21 162.8 29.9 443 176-732 54-519 (604)
14 KOG2122|consensus 99.8 1.2E-16 2.6E-21 183.3 24.6 262 555-891 317-604 (2195)
15 KOG2122|consensus 99.7 9.3E-15 2E-19 168.1 28.3 388 251-694 201-604 (2195)
16 KOG4500|consensus 99.6 7.9E-14 1.7E-18 142.4 26.5 425 133-608 54-521 (604)
17 KOG1222|consensus 99.6 3.4E-13 7.3E-18 139.4 28.4 383 136-650 278-665 (791)
18 KOG4199|consensus 99.6 2.9E-13 6.2E-18 134.1 26.0 315 16-342 88-426 (461)
19 PF10508 Proteasom_PSMB: Prote 99.6 4.3E-12 9.3E-17 144.8 39.0 385 82-542 43-440 (503)
20 KOG4199|consensus 99.6 5.7E-13 1.2E-17 132.1 26.1 282 113-424 137-439 (461)
21 KOG1293|consensus 99.6 3.1E-12 6.6E-17 138.6 30.4 497 213-783 17-545 (678)
22 KOG1222|consensus 99.5 6.4E-12 1.4E-16 130.1 26.9 385 177-694 276-666 (791)
23 PF10508 Proteasom_PSMB: Prote 99.5 2.7E-10 5.7E-15 130.2 36.7 379 126-626 43-440 (503)
24 KOG1293|consensus 99.4 8.5E-10 1.8E-14 120.1 35.9 551 176-769 21-625 (678)
25 PF04826 Arm_2: Armadillo-like 99.4 1E-11 2.3E-16 126.1 20.4 220 535-761 12-252 (254)
26 PF01602 Adaptin_N: Adaptin N 99.4 2E-10 4.4E-15 135.2 34.5 504 125-767 8-520 (526)
27 KOG2171|consensus 99.4 1.7E-09 3.7E-14 125.5 38.5 539 123-750 6-570 (1075)
28 PF04826 Arm_2: Armadillo-like 99.4 3.9E-11 8.5E-16 121.9 20.3 198 116-321 7-207 (254)
29 KOG2171|consensus 99.4 8.5E-09 1.8E-13 119.8 41.5 506 78-679 5-534 (1075)
30 PF01602 Adaptin_N: Adaptin N 99.4 2.2E-10 4.7E-15 135.0 27.8 468 78-647 43-523 (526)
31 KOG1241|consensus 99.3 7.4E-08 1.6E-12 106.6 43.5 632 1-772 1-712 (859)
32 PRK09687 putative lyase; Provi 99.3 2.1E-10 4.5E-15 119.8 21.3 238 492-783 22-260 (280)
33 cd00256 VATPase_H VATPase_H, r 99.3 1E-09 2.3E-14 118.7 27.0 354 163-607 53-426 (429)
34 PRK09687 putative lyase; Provi 99.3 9.2E-10 2E-14 115.0 22.7 253 459-767 24-278 (280)
35 KOG2023|consensus 99.3 9.8E-09 2.1E-13 111.3 30.5 540 77-691 128-775 (885)
36 PRK13800 putative oxidoreducta 99.2 2.3E-09 5.1E-14 131.7 28.2 119 495-644 777-895 (897)
37 PTZ00429 beta-adaptin; Provisi 99.2 1.2E-06 2.6E-11 102.8 46.7 522 119-782 30-558 (746)
38 KOG1824|consensus 99.1 5.6E-06 1.2E-10 93.9 46.4 222 538-783 820-1048(1233)
39 PRK13800 putative oxidoreducta 99.1 1.1E-08 2.4E-13 125.9 27.7 274 74-424 618-894 (897)
40 KOG2023|consensus 99.1 3.2E-08 7E-13 107.4 26.7 585 122-777 129-823 (885)
41 KOG1824|consensus 99.1 1.6E-05 3.4E-10 90.5 48.4 755 121-957 174-1055(1233)
42 cd00020 ARM Armadillo/beta-cat 99.1 8.6E-10 1.9E-14 101.1 12.8 118 572-690 2-119 (120)
43 PTZ00429 beta-adaptin; Provisi 99.1 7.9E-06 1.7E-10 96.1 48.2 464 78-649 69-547 (746)
44 cd00020 ARM Armadillo/beta-cat 99.1 1.4E-09 3.1E-14 99.6 11.9 113 534-647 6-119 (120)
45 COG5215 KAP95 Karyopherin (imp 99.1 1.6E-06 3.6E-11 92.7 35.6 551 81-771 98-711 (858)
46 KOG0168|consensus 99.0 6.2E-08 1.3E-12 108.1 25.6 431 495-956 169-653 (1051)
47 KOG2759|consensus 99.0 2.5E-07 5.4E-12 96.2 26.0 349 164-607 66-439 (442)
48 cd00256 VATPase_H VATPase_H, r 98.9 7.1E-07 1.5E-11 97.0 28.3 348 535-932 53-423 (429)
49 KOG0946|consensus 98.9 1.1E-05 2.4E-10 90.0 35.4 218 77-301 22-266 (970)
50 KOG0168|consensus 98.9 1.3E-06 2.8E-11 97.9 27.0 449 124-629 170-653 (1051)
51 KOG1241|consensus 98.8 1.7E-05 3.6E-10 88.5 34.4 569 130-774 10-671 (859)
52 PF03224 V-ATPase_H_N: V-ATPas 98.8 1E-07 2.3E-12 102.6 14.7 220 164-412 56-295 (312)
53 KOG1062|consensus 98.7 0.00019 4.1E-09 81.0 38.1 435 124-724 110-573 (866)
54 COG5215 KAP95 Karyopherin (imp 98.7 0.0011 2.4E-08 71.8 42.2 347 252-649 99-480 (858)
55 KOG0213|consensus 98.7 0.0015 3.2E-08 73.0 43.9 253 495-769 801-1063(1172)
56 KOG2160|consensus 98.7 9.6E-07 2.1E-11 91.0 16.9 177 99-276 102-282 (342)
57 KOG1789|consensus 98.6 0.00022 4.7E-09 81.9 35.1 103 112-214 1418-1533(2235)
58 KOG2160|consensus 98.6 2.4E-06 5.3E-11 88.1 18.1 183 132-317 94-280 (342)
59 KOG0213|consensus 98.6 0.0013 2.8E-08 73.5 39.5 587 78-767 508-1138(1172)
60 PF03224 V-ATPase_H_N: V-ATPas 98.6 1.3E-06 2.7E-11 94.3 16.7 217 123-342 57-294 (312)
61 KOG0946|consensus 98.6 9.7E-05 2.1E-09 82.8 30.4 303 2-328 22-356 (970)
62 PF05536 Neurochondrin: Neuroc 98.6 0.00014 3.1E-09 83.5 33.1 152 77-235 5-169 (543)
63 KOG4413|consensus 98.5 5E-05 1.1E-09 76.2 24.0 385 122-562 83-481 (524)
64 KOG3678|consensus 98.5 1.3E-05 2.8E-10 83.9 19.1 172 116-291 175-350 (832)
65 KOG4646|consensus 98.4 1.5E-06 3.3E-11 75.2 9.8 126 164-290 17-142 (173)
66 KOG1059|consensus 98.4 0.0023 5E-08 71.5 36.2 135 207-355 146-281 (877)
67 KOG2759|consensus 98.4 9.5E-05 2.1E-09 77.5 24.3 335 77-424 65-433 (442)
68 KOG2973|consensus 98.3 0.00012 2.7E-09 73.3 21.1 278 124-413 6-298 (353)
69 KOG1789|consensus 98.3 0.0052 1.1E-07 71.2 36.2 386 220-673 1740-2142(2235)
70 KOG0212|consensus 98.3 0.0003 6.5E-09 76.2 24.6 374 202-649 81-481 (675)
71 KOG4646|consensus 98.3 4.8E-06 1E-10 72.2 9.1 129 535-664 16-144 (173)
72 COG5181 HSH155 U2 snRNP splice 98.2 0.0028 6.1E-08 69.4 30.3 267 494-783 605-887 (975)
73 KOG1060|consensus 98.2 0.0051 1.1E-07 69.6 32.7 426 78-608 72-535 (968)
74 KOG3678|consensus 98.2 9E-05 1.9E-09 77.8 17.2 266 155-424 173-447 (832)
75 KOG1062|consensus 98.1 0.0075 1.6E-07 68.7 32.7 442 209-764 111-574 (866)
76 PF05536 Neurochondrin: Neuroc 98.1 0.0036 7.8E-08 72.1 31.2 150 122-276 6-168 (543)
77 KOG1061|consensus 98.1 0.0055 1.2E-07 69.7 31.1 541 120-731 12-567 (734)
78 KOG4413|consensus 98.1 0.0042 9.1E-08 62.8 26.8 200 137-341 59-265 (524)
79 KOG1061|consensus 98.1 0.0012 2.5E-08 75.0 25.4 145 77-238 49-193 (734)
80 KOG0915|consensus 98.1 0.021 4.7E-07 69.5 36.9 415 206-731 999-1426(1702)
81 KOG1060|consensus 98.0 0.019 4.1E-07 65.2 32.5 182 209-413 39-230 (968)
82 TIGR02270 conserved hypothetic 98.0 0.00062 1.4E-08 75.0 20.9 211 495-773 88-298 (410)
83 KOG0212|consensus 98.0 0.0035 7.5E-08 68.2 25.3 269 496-783 170-448 (675)
84 TIGR02270 conserved hypothetic 98.0 0.00085 1.8E-08 73.9 21.5 118 79-232 88-205 (410)
85 KOG1242|consensus 97.9 0.013 2.7E-07 65.4 29.3 220 122-358 97-322 (569)
86 COG5240 SEC21 Vesicle coat com 97.9 0.042 9E-07 60.1 32.1 245 495-767 266-512 (898)
87 KOG1077|consensus 97.9 0.056 1.2E-06 60.7 33.8 316 206-606 112-433 (938)
88 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0055 1.2E-07 66.9 25.9 232 122-360 26-269 (371)
89 KOG1077|consensus 97.9 0.086 1.9E-06 59.3 35.6 143 79-238 76-220 (938)
90 KOG1059|consensus 97.9 0.0065 1.4E-07 68.1 25.1 207 165-388 146-365 (877)
91 PRK14707 hypothetical protein; 97.8 0.22 4.7E-06 63.1 49.6 186 110-300 279-468 (2710)
92 KOG2973|consensus 97.8 0.0014 3E-08 66.1 17.8 261 495-763 5-307 (353)
93 PF00514 Arm: Armadillo/beta-c 97.8 1.8E-05 3.9E-10 55.7 3.4 39 567-605 2-40 (41)
94 KOG1242|consensus 97.8 0.0097 2.1E-07 66.3 25.9 389 166-591 58-467 (569)
95 COG5369 Uncharacterized conser 97.8 0.00038 8.3E-09 74.7 13.7 183 600-783 412-606 (743)
96 KOG0211|consensus 97.7 0.076 1.6E-06 62.7 31.8 494 124-730 162-662 (759)
97 PRK14707 hypothetical protein; 97.6 0.43 9.3E-06 60.7 50.4 272 120-424 162-440 (2710)
98 PF00514 Arm: Armadillo/beta-c 97.6 7.1E-05 1.5E-09 52.7 4.0 40 194-233 1-40 (41)
99 KOG0211|consensus 97.6 0.26 5.6E-06 58.4 34.8 458 165-731 84-546 (759)
100 KOG1517|consensus 97.6 0.002 4.4E-08 74.8 16.4 180 96-276 486-671 (1387)
101 COG5240 SEC21 Vesicle coat com 97.5 0.24 5.1E-06 54.6 30.6 492 96-731 40-554 (898)
102 KOG2734|consensus 97.5 0.017 3.7E-07 61.2 20.9 237 100-340 104-370 (536)
103 COG1413 FOG: HEAT repeat [Ener 97.5 0.021 4.5E-07 62.7 22.9 213 78-355 44-268 (335)
104 COG1413 FOG: HEAT repeat [Ener 97.5 0.012 2.6E-07 64.6 20.9 214 493-767 43-269 (335)
105 PF13646 HEAT_2: HEAT repeats; 97.4 0.00035 7.5E-09 59.4 6.7 87 579-687 1-88 (88)
106 COG5181 HSH155 U2 snRNP splice 97.4 0.073 1.6E-06 58.8 25.1 146 164-318 605-758 (975)
107 PF14664 RICTOR_N: Rapamycin-i 97.4 0.017 3.6E-07 63.2 20.3 223 496-724 28-261 (371)
108 KOG2734|consensus 97.3 0.023 5E-07 60.3 19.2 238 142-410 105-371 (536)
109 PF13646 HEAT_2: HEAT repeats; 97.3 0.00088 1.9E-08 56.9 7.4 87 537-644 1-88 (88)
110 KOG1517|consensus 97.3 0.008 1.7E-07 70.1 16.5 210 573-782 508-743 (1387)
111 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.0084 1.8E-07 60.6 14.2 234 80-317 152-426 (432)
112 KOG0915|consensus 97.2 0.75 1.6E-05 57.0 32.3 200 548-771 1143-1344(1702)
113 PF10165 Ric8: Guanine nucleot 97.2 0.033 7.1E-07 62.9 20.5 256 514-771 2-337 (446)
114 KOG2259|consensus 97.1 0.0078 1.7E-07 66.8 14.3 104 158-274 369-473 (823)
115 PF09759 Atx10homo_assoc: Spin 97.1 0.0014 3.1E-08 55.7 6.6 67 593-659 2-70 (102)
116 KOG4535|consensus 97.1 0.15 3.2E-06 54.9 22.5 259 500-767 302-599 (728)
117 KOG1078|consensus 97.1 0.95 2.1E-05 52.2 30.9 139 495-648 393-532 (865)
118 PF10165 Ric8: Guanine nucleot 97.0 0.028 6.1E-07 63.5 17.3 175 141-317 1-216 (446)
119 smart00185 ARM Armadillo/beta- 97.0 0.0012 2.7E-08 46.3 4.3 38 568-605 3-40 (41)
120 smart00185 ARM Armadillo/beta- 96.8 0.0022 4.8E-08 45.0 4.8 38 611-648 4-41 (41)
121 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0016 3.6E-08 49.3 3.4 55 550-604 1-55 (55)
122 PF12348 CLASP_N: CLASP N term 96.7 0.021 4.5E-07 58.7 12.8 189 587-781 17-216 (228)
123 KOG1058|consensus 96.6 0.47 1E-05 54.2 22.5 139 495-650 319-465 (948)
124 KOG4203|consensus 96.6 2.2E-05 4.8E-10 87.5 -10.8 284 573-964 71-356 (473)
125 KOG1240|consensus 96.5 0.068 1.5E-06 63.9 15.8 268 478-767 447-721 (1431)
126 COG5369 Uncharacterized conser 96.5 0.017 3.7E-07 62.6 10.0 139 180-319 405-545 (743)
127 PF12348 CLASP_N: CLASP N term 96.4 0.053 1.1E-06 55.7 13.4 185 86-277 16-207 (228)
128 KOG2259|consensus 96.3 0.031 6.7E-07 62.3 11.2 268 495-782 200-486 (823)
129 PF09759 Atx10homo_assoc: Spin 96.3 0.02 4.3E-07 48.8 7.7 68 221-288 2-71 (102)
130 PF11841 DUF3361: Domain of un 96.3 0.083 1.8E-06 49.0 12.1 125 115-240 5-137 (160)
131 COG5231 VMA13 Vacuolar H+-ATPa 96.2 0.25 5.4E-06 50.4 16.2 232 127-358 155-426 (432)
132 KOG1240|consensus 96.2 0.31 6.7E-06 58.6 19.3 207 536-760 423-635 (1431)
133 PF13513 HEAT_EZ: HEAT-like re 96.2 0.0085 1.8E-07 45.4 4.6 55 178-232 1-55 (55)
134 KOG0567|consensus 96.1 0.65 1.4E-05 46.5 18.1 236 495-783 5-259 (289)
135 KOG0567|consensus 96.1 0.61 1.3E-05 46.7 17.9 223 494-767 37-276 (289)
136 PF12460 MMS19_C: RNAPII trans 96.1 2.1 4.5E-05 48.4 25.0 115 535-652 271-398 (415)
137 PF12460 MMS19_C: RNAPII trans 96.0 3.3 7.1E-05 46.8 26.3 357 124-566 2-395 (415)
138 KOG1943|consensus 95.9 6.1 0.00013 47.7 29.7 243 77-346 341-597 (1133)
139 KOG0414|consensus 95.6 7.9 0.00017 47.3 28.1 143 493-649 919-1065(1251)
140 PF11841 DUF3361: Domain of un 95.6 0.2 4.3E-06 46.6 11.5 122 491-613 9-138 (160)
141 COG5096 Vesicle coat complex, 95.6 7.1 0.00015 46.3 28.9 166 130-318 28-194 (757)
142 KOG4535|consensus 95.5 0.73 1.6E-05 49.8 16.7 119 490-608 43-181 (728)
143 COG5096 Vesicle coat complex, 95.4 0.44 9.6E-06 55.9 16.3 165 586-769 28-193 (757)
144 KOG1058|consensus 95.2 2.2 4.8E-05 49.1 20.1 138 122-277 135-273 (948)
145 PF08045 CDC14: Cell division 95.1 0.31 6.7E-06 49.5 12.2 99 220-318 106-206 (257)
146 KOG4151|consensus 95.0 0.6 1.3E-05 54.1 15.4 226 149-410 491-722 (748)
147 PF11698 V-ATPase_H_C: V-ATPas 95.0 0.047 1E-06 47.9 5.2 70 164-233 44-114 (119)
148 PF13764 E3_UbLigase_R4: E3 ub 94.9 3.5 7.7E-05 49.6 22.1 181 118-301 114-331 (802)
149 PF11698 V-ATPase_H_C: V-ATPas 94.8 0.04 8.8E-07 48.3 4.4 72 535-606 43-115 (119)
150 PF06025 DUF913: Domain of Unk 94.8 6.4 0.00014 43.4 22.4 128 117-244 101-242 (379)
151 PF04063 DUF383: Domain of unk 94.1 0.24 5.2E-06 48.4 8.6 111 133-244 7-141 (192)
152 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.15 3.2E-06 43.7 6.2 64 703-767 27-92 (97)
153 PF04078 Rcd1: Cell differenti 93.9 2.1 4.5E-05 43.5 14.6 201 176-397 7-227 (262)
154 PF12717 Cnd1: non-SMC mitotic 93.8 0.86 1.9E-05 44.5 12.0 91 549-649 1-93 (178)
155 PF04063 DUF383: Domain of unk 93.8 0.16 3.5E-06 49.6 6.7 77 535-611 52-137 (192)
156 KOG3036|consensus 93.7 1.8 4E-05 42.8 13.4 148 135-285 93-255 (293)
157 PF12755 Vac14_Fab1_bd: Vacuol 93.6 0.23 5.1E-06 42.4 6.6 69 576-646 26-94 (97)
158 PF06025 DUF913: Domain of Unk 93.6 4.6 0.0001 44.5 18.2 103 200-303 100-210 (379)
159 PF11701 UNC45-central: Myosin 93.5 0.12 2.6E-06 49.1 5.1 144 123-273 5-156 (157)
160 KOG1832|consensus 93.4 1.7 3.8E-05 50.6 14.6 171 197-402 593-787 (1516)
161 KOG1991|consensus 93.4 23 0.0005 42.7 37.9 232 534-769 409-669 (1010)
162 KOG1078|consensus 93.4 20 0.00043 42.0 32.7 138 621-770 393-531 (865)
163 KOG1943|consensus 93.1 26 0.00057 42.7 43.8 327 289-648 341-705 (1133)
164 PF05004 IFRD: Interferon-rela 93.1 5.5 0.00012 42.7 17.5 192 124-318 46-256 (309)
165 PF11701 UNC45-central: Myosin 93.0 0.38 8.2E-06 45.7 7.7 74 116-191 81-157 (157)
166 KOG2062|consensus 93.0 8 0.00017 44.7 18.7 160 578-759 520-682 (929)
167 PF12717 Cnd1: non-SMC mitotic 93.0 5.7 0.00012 38.7 16.1 92 177-277 1-93 (178)
168 KOG1991|consensus 92.9 27 0.00059 42.1 33.7 140 163-304 410-562 (1010)
169 PF02985 HEAT: HEAT repeat; I 92.8 0.18 3.9E-06 32.7 3.6 28 579-606 2-29 (31)
170 KOG2274|consensus 92.8 27 0.00058 41.7 43.1 155 492-649 529-690 (1005)
171 KOG2062|consensus 92.6 15 0.00033 42.6 20.2 127 492-635 553-681 (929)
172 KOG4151|consensus 92.6 0.71 1.5E-05 53.5 10.3 190 112-307 495-688 (748)
173 KOG3036|consensus 92.5 2.2 4.7E-05 42.4 11.9 147 509-657 95-255 (293)
174 PF08045 CDC14: Cell division 92.4 1.6 3.4E-05 44.6 11.4 102 591-692 105-209 (257)
175 PF05004 IFRD: Interferon-rela 92.2 8.4 0.00018 41.3 17.3 189 80-275 46-256 (309)
176 PF13764 E3_UbLigase_R4: E3 ub 91.9 9.2 0.0002 46.1 18.7 193 4-219 119-333 (802)
177 PF12031 DUF3518: Domain of un 91.8 0.4 8.6E-06 47.4 6.2 84 136-219 139-230 (257)
178 PF12719 Cnd3: Nuclear condens 91.8 5.5 0.00012 42.6 15.7 170 121-301 26-209 (298)
179 PF08569 Mo25: Mo25-like; Int 91.3 6.2 0.00013 42.6 15.2 207 116-327 71-291 (335)
180 KOG1832|consensus 91.3 2.3 5E-05 49.6 12.3 54 894-947 729-786 (1516)
181 PF02985 HEAT: HEAT repeat; I 90.8 0.52 1.1E-05 30.5 4.1 29 495-523 2-30 (31)
182 PF08569 Mo25: Mo25-like; Int 90.7 5.9 0.00013 42.7 14.3 204 492-700 75-292 (335)
183 PF07814 WAPL: Wings apart-lik 90.4 26 0.00057 38.5 19.6 54 2-55 21-74 (361)
184 PF12719 Cnd3: Nuclear condens 90.2 4.9 0.00011 43.1 13.4 163 500-673 34-209 (298)
185 KOG0414|consensus 90.2 3.1 6.8E-05 50.5 12.5 138 124-276 922-1064(1251)
186 KOG2999|consensus 89.9 9.5 0.00021 42.5 14.8 153 123-276 85-242 (713)
187 KOG1248|consensus 89.8 12 0.00025 46.1 16.7 231 7-275 658-897 (1176)
188 KOG2274|consensus 89.7 22 0.00047 42.4 18.3 182 504-691 502-689 (1005)
189 PF05918 API5: Apoptosis inhib 89.6 14 0.0003 42.5 16.6 129 166-314 26-157 (556)
190 PF04078 Rcd1: Cell differenti 89.5 6.3 0.00014 40.1 12.4 110 492-604 138-260 (262)
191 KOG2611|consensus 89.0 37 0.0008 37.4 18.1 130 125-258 15-163 (698)
192 PRK09169 hypothetical protein; 88.8 1E+02 0.0022 41.5 42.1 62 344-416 455-516 (2316)
193 COG5116 RPN2 26S proteasome re 88.2 3.8 8.3E-05 45.5 10.5 154 497-674 520-675 (926)
194 PF08167 RIX1: rRNA processing 87.9 3.2 7E-05 39.8 9.0 114 122-238 26-147 (165)
195 KOG2025|consensus 87.3 66 0.0014 37.5 19.6 116 577-701 85-200 (892)
196 KOG2611|consensus 87.3 25 0.00055 38.6 15.6 132 579-713 13-162 (698)
197 PF07814 WAPL: Wings apart-lik 86.8 8.2 0.00018 42.5 12.5 93 165-257 23-116 (361)
198 PF05918 API5: Apoptosis inhib 86.5 6.6 0.00014 45.0 11.7 125 126-271 28-157 (556)
199 PF14668 RICTOR_V: Rapamycin-i 85.8 2.1 4.5E-05 34.2 5.3 68 510-578 4-71 (73)
200 PF06371 Drf_GBD: Diaphanous G 85.4 6.7 0.00015 38.6 10.2 79 526-605 99-186 (187)
201 KOG2999|consensus 85.3 17 0.00036 40.7 13.4 151 165-318 85-241 (713)
202 COG5116 RPN2 26S proteasome re 85.0 11 0.00024 42.2 11.8 155 581-757 520-677 (926)
203 KOG1967|consensus 84.5 7.6 0.00017 46.1 11.0 149 576-726 866-1018(1030)
204 KOG2025|consensus 84.4 28 0.0006 40.4 14.9 106 77-190 85-190 (892)
205 KOG2956|consensus 84.4 36 0.00078 37.6 15.1 171 506-689 300-475 (516)
206 PF14668 RICTOR_V: Rapamycin-i 84.3 3 6.4E-05 33.4 5.5 68 636-704 4-71 (73)
207 KOG2137|consensus 83.0 32 0.00069 40.2 15.0 137 116-259 384-520 (700)
208 KOG2956|consensus 82.3 35 0.00075 37.7 14.1 138 620-767 330-473 (516)
209 KOG1820|consensus 82.1 42 0.0009 40.8 16.2 188 492-690 252-442 (815)
210 KOG2032|consensus 82.1 36 0.00078 37.8 14.2 145 127-274 264-413 (533)
211 PF06371 Drf_GBD: Diaphanous G 81.5 11 0.00023 37.1 9.9 80 153-233 98-186 (187)
212 KOG2032|consensus 81.4 97 0.0021 34.7 17.6 149 497-648 262-415 (533)
213 PF12530 DUF3730: Protein of u 81.4 52 0.0011 33.7 14.9 92 122-218 122-216 (234)
214 PRK09169 hypothetical protein; 81.3 2.2E+02 0.0047 38.7 44.4 120 120-242 162-285 (2316)
215 PF12530 DUF3730: Protein of u 80.9 70 0.0015 32.7 17.5 204 537-761 2-222 (234)
216 KOG1967|consensus 80.6 8.9 0.00019 45.6 9.7 148 120-270 866-1018(1030)
217 PF10363 DUF2435: Protein of u 80.6 4.1 8.9E-05 34.4 5.4 83 166-258 6-88 (92)
218 PF11707 Npa1: Ribosome 60S bi 79.6 98 0.0021 33.6 19.3 154 123-276 58-237 (330)
219 KOG1820|consensus 79.2 61 0.0013 39.5 16.3 184 124-317 256-441 (815)
220 PF10363 DUF2435: Protein of u 78.7 8.4 0.00018 32.6 6.7 71 705-775 5-76 (92)
221 PF11864 DUF3384: Domain of un 77.7 1.3E+02 0.0028 34.6 18.2 199 540-752 33-260 (464)
222 KOG4653|consensus 76.2 73 0.0016 38.1 15.0 185 79-276 729-918 (982)
223 PF12031 DUF3518: Domain of un 75.9 5.9 0.00013 39.5 5.6 84 508-591 139-230 (257)
224 KOG1248|consensus 75.1 2.3E+02 0.005 35.6 46.1 216 545-767 663-894 (1176)
225 PF11865 DUF3385: Domain of un 74.7 29 0.00063 33.0 10.0 146 533-688 8-154 (160)
226 KOG1020|consensus 74.5 2.7E+02 0.0058 36.1 31.7 136 124-276 819-960 (1692)
227 KOG4653|consensus 74.4 40 0.00087 40.1 12.4 207 549-767 740-960 (982)
228 PF08324 PUL: PUL domain; Int 74.2 28 0.00061 36.5 11.0 146 138-283 80-238 (268)
229 PF14726 RTTN_N: Rotatin, an a 73.8 17 0.00037 31.1 7.2 71 157-228 24-94 (98)
230 PF08324 PUL: PUL domain; Int 73.8 13 0.00028 39.2 8.2 154 497-650 67-233 (268)
231 KOG3665|consensus 73.3 2.2E+02 0.0048 34.5 19.5 141 270-410 494-677 (699)
232 PF08167 RIX1: rRNA processing 73.2 18 0.00039 34.7 8.3 113 495-610 27-147 (165)
233 KOG3665|consensus 72.7 1.8E+02 0.0039 35.2 18.1 91 642-732 494-587 (699)
234 COG5218 YCG1 Chromosome conden 71.5 1.6E+02 0.0034 33.8 15.5 112 205-327 91-204 (885)
235 KOG2137|consensus 67.9 57 0.0012 38.3 11.8 139 487-632 383-521 (700)
236 PF01347 Vitellogenin_N: Lipop 67.2 33 0.00072 41.2 10.9 163 495-683 397-581 (618)
237 COG5098 Chromosome condensatio 66.7 29 0.00063 40.0 9.0 131 133-278 908-1039(1128)
238 PF01347 Vitellogenin_N: Lipop 66.2 2.9E+02 0.0063 33.1 20.3 136 620-769 396-551 (618)
239 PF08216 CTNNBL: Catenin-beta- 66.1 18 0.00039 31.3 5.7 78 137-223 28-105 (108)
240 KOG1243|consensus 65.4 68 0.0015 37.5 11.8 184 574-767 327-511 (690)
241 KOG1020|consensus 63.4 4.5E+02 0.0097 34.3 37.2 59 699-757 1221-1279(1692)
242 smart00638 LPD_N Lipoprotein N 62.7 75 0.0016 37.8 12.5 130 535-683 393-537 (574)
243 COG5098 Chromosome condensatio 62.1 36 0.00078 39.3 8.7 131 505-649 908-1038(1128)
244 PF13251 DUF4042: Domain of un 60.0 51 0.0011 32.0 8.4 106 501-609 48-177 (182)
245 COG5209 RCD1 Uncharacterized p 59.9 51 0.0011 32.5 8.1 100 136-237 115-221 (315)
246 cd03569 VHS_Hrs_Vps27p VHS dom 59.7 24 0.00052 32.8 5.9 72 122-194 42-115 (142)
247 COG5209 RCD1 Uncharacterized p 59.4 44 0.00096 32.9 7.6 140 510-649 117-269 (315)
248 PF11865 DUF3385: Domain of un 57.7 50 0.0011 31.4 7.9 138 207-353 12-150 (160)
249 smart00638 LPD_N Lipoprotein N 56.0 1.4E+02 0.0031 35.5 13.3 167 77-271 357-540 (574)
250 PF14500 MMS19_N: Dos2-interac 55.2 2.7E+02 0.0058 29.1 14.0 147 81-236 3-155 (262)
251 KOG0301|consensus 54.1 1.9E+02 0.0042 33.7 12.6 128 122-258 590-727 (745)
252 PF06685 DUF1186: Protein of u 54.1 2.7E+02 0.0058 28.7 13.3 73 119-203 71-153 (249)
253 cd03561 VHS VHS domain family; 53.2 99 0.0021 28.3 8.9 88 476-565 22-112 (133)
254 cd03568 VHS_STAM VHS domain fa 52.9 42 0.00091 31.2 6.3 72 122-194 38-111 (144)
255 COG5656 SXM1 Importin, protein 52.5 4.8E+02 0.01 31.2 15.4 233 535-770 408-669 (970)
256 KOG2676|consensus 52.3 17 0.00037 38.2 4.0 62 597-658 376-439 (478)
257 PF11707 Npa1: Ribosome 60S bi 52.3 3.4E+02 0.0074 29.5 16.6 158 537-695 58-241 (330)
258 KOG2933|consensus 51.7 66 0.0014 33.7 7.9 136 623-768 92-231 (334)
259 PF06685 DUF1186: Protein of u 51.6 1.6E+02 0.0034 30.4 10.6 101 163-285 31-151 (249)
260 smart00288 VHS Domain present 51.4 83 0.0018 28.8 8.0 87 477-565 23-111 (133)
261 KOG1949|consensus 51.0 2.9E+02 0.0064 32.5 13.4 147 578-731 175-330 (1005)
262 PF14225 MOR2-PAG1_C: Cell mor 50.9 3.1E+02 0.0067 28.6 18.8 126 120-260 110-241 (262)
263 cd03569 VHS_Hrs_Vps27p VHS dom 50.6 54 0.0012 30.4 6.7 74 492-565 40-114 (142)
264 PF14500 MMS19_N: Dos2-interac 50.5 3.2E+02 0.0068 28.5 15.1 211 498-731 4-236 (262)
265 PF08216 CTNNBL: Catenin-beta- 49.1 21 0.00044 31.0 3.3 43 679-721 63-105 (108)
266 PF13251 DUF4042: Domain of un 48.7 1.5E+02 0.0033 28.8 9.6 105 627-733 48-175 (182)
267 cd03561 VHS VHS domain family; 48.6 62 0.0013 29.6 6.8 72 122-194 38-113 (133)
268 KOG1566|consensus 48.2 3.6E+02 0.0078 28.6 16.3 205 116-323 74-290 (342)
269 KOG1243|consensus 48.2 68 0.0015 37.5 8.2 146 616-767 327-472 (690)
270 KOG1566|consensus 47.4 3.7E+02 0.0081 28.5 14.9 202 492-697 78-292 (342)
271 PF14726 RTTN_N: Rotatin, an a 47.1 1.3E+02 0.0027 25.9 7.7 68 529-597 24-91 (98)
272 KOG2933|consensus 46.2 70 0.0015 33.5 7.1 140 494-648 89-234 (334)
273 PF12830 Nipped-B_C: Sister ch 45.7 2.3E+02 0.0051 27.7 10.8 65 495-565 10-74 (187)
274 PF12765 Cohesin_HEAT: HEAT re 45.5 30 0.00065 24.2 3.2 40 726-765 2-41 (42)
275 PF00790 VHS: VHS domain; Int 45.1 1.6E+02 0.0035 27.2 9.1 72 122-194 43-119 (140)
276 PF12074 DUF3554: Domain of un 44.3 3.6E+02 0.0078 29.4 13.2 214 535-754 22-256 (339)
277 KOG1788|consensus 44.2 6.8E+02 0.015 31.2 15.2 78 197-274 900-980 (2799)
278 KOG1949|consensus 44.1 3.5E+02 0.0076 32.0 12.6 146 82-233 179-330 (1005)
279 PF12830 Nipped-B_C: Sister ch 41.9 3.5E+02 0.0075 26.5 12.8 146 536-693 9-169 (187)
280 smart00288 VHS Domain present 41.6 1E+02 0.0022 28.3 7.0 71 248-318 38-110 (133)
281 cd03568 VHS_STAM VHS domain fa 41.4 82 0.0018 29.3 6.4 71 578-648 38-110 (144)
282 KOG4464|consensus 41.4 5.2E+02 0.011 28.5 21.3 148 126-274 50-226 (532)
283 cd03567 VHS_GGA VHS domain fam 41.3 1.4E+02 0.003 27.6 7.7 72 248-319 39-116 (139)
284 PF04869 Uso1_p115_head: Uso1 41.2 4.7E+02 0.01 28.1 12.8 138 165-302 36-212 (312)
285 KOG1992|consensus 40.7 7.5E+02 0.016 30.1 26.9 55 370-433 16-70 (960)
286 KOG0301|consensus 35.7 6.5E+02 0.014 29.7 13.1 162 504-673 555-728 (745)
287 KOG2676|consensus 35.6 50 0.0011 34.9 4.3 64 224-287 375-440 (478)
288 cd03567 VHS_GGA VHS domain fam 34.7 1.2E+02 0.0026 28.0 6.3 70 578-647 39-115 (139)
289 KOG1410|consensus 34.6 8.4E+02 0.018 28.8 17.3 263 496-768 8-331 (1082)
290 KOG4464|consensus 34.2 2.6E+02 0.0057 30.6 9.2 135 166-300 48-198 (532)
291 PF00790 VHS: VHS domain; Int 33.7 1.9E+02 0.0041 26.7 7.6 74 492-565 41-118 (140)
292 KOG1848|consensus 32.1 7.7E+02 0.017 32.0 13.8 305 493-886 796-1130(1610)
293 KOG0413|consensus 31.6 1.8E+02 0.0038 35.5 8.2 127 134-274 944-1071(1529)
294 COG5218 YCG1 Chromosome conden 31.4 8.9E+02 0.019 28.2 31.1 108 77-195 91-198 (885)
295 KOG1822|consensus 31.3 9.3E+02 0.02 32.5 14.7 184 589-773 928-1129(2067)
296 KOG2038|consensus 30.3 1.8E+02 0.0039 34.5 7.8 99 206-314 305-404 (988)
297 PF12074 DUF3554: Domain of un 30.0 7.5E+02 0.016 26.9 15.1 186 578-776 23-240 (339)
298 PF10274 ParcG: Parkin co-regu 29.3 4.9E+02 0.011 25.4 9.5 107 165-274 40-162 (183)
299 PF12231 Rif1_N: Rap1-interact 28.9 3.5E+02 0.0075 30.0 10.0 180 586-766 2-199 (372)
300 PF11791 Aconitase_B_N: Aconit 28.7 1.2E+02 0.0027 28.1 5.1 44 594-648 80-123 (154)
301 PF03130 HEAT_PBS: PBS lyase H 27.3 1.1E+02 0.0024 18.8 3.3 23 758-782 1-23 (27)
302 KOG2038|consensus 27.2 4E+02 0.0088 31.8 9.9 77 576-657 303-379 (988)
303 PF11791 Aconitase_B_N: Aconit 27.1 1.6E+02 0.0035 27.4 5.6 26 249-274 96-121 (154)
304 PF01365 RYDR_ITPR: RIH domain 27.0 1.5E+02 0.0033 29.6 6.2 104 196-302 34-155 (207)
305 cd08050 TAF6 TATA Binding Prot 26.8 5.7E+02 0.012 27.9 11.0 102 125-236 182-299 (343)
306 smart00567 EZ_HEAT E-Z type HE 26.2 1E+02 0.0022 19.3 3.1 25 757-783 2-26 (30)
307 PF12054 DUF3535: Domain of un 26.2 6.3E+02 0.014 28.7 11.5 201 180-416 103-370 (441)
308 COG1698 Uncharacterized protei 25.8 3.4E+02 0.0073 22.7 6.4 63 870-938 9-73 (93)
309 PF14663 RasGEF_N_2: Rapamycin 25.7 1.7E+02 0.0037 26.0 5.5 53 206-259 9-70 (115)
310 PF10521 DUF2454: Protein of u 25.1 6.1E+02 0.013 26.8 10.6 71 578-648 120-203 (282)
311 PF01603 B56: Protein phosphat 24.6 6.2E+02 0.013 28.5 11.0 192 570-768 126-323 (409)
312 PF14631 FancD2: Fanconi anaem 23.9 1.6E+03 0.035 30.0 15.7 250 2-274 363-638 (1426)
313 KOG1788|consensus 23.8 1.5E+03 0.033 28.4 23.1 80 569-648 900-982 (2799)
314 PF11864 DUF3384: Domain of un 23.7 1.1E+03 0.025 26.9 25.2 246 506-768 42-327 (464)
315 PF10521 DUF2454: Protein of u 22.6 9.2E+02 0.02 25.4 11.5 71 206-276 120-203 (282)
316 PF08506 Cse1: Cse1; InterPro 22.6 4.6E+02 0.0099 29.0 9.3 129 632-766 224-370 (370)
317 PF09324 DUF1981: Domain of un 22.6 3.8E+02 0.0082 22.3 6.7 65 164-232 18-86 (86)
318 KOG1822|consensus 22.3 1.9E+03 0.04 30.0 15.0 115 495-612 878-994 (2067)
319 cd08050 TAF6 TATA Binding Prot 21.5 1.1E+03 0.023 25.8 12.8 101 165-276 180-297 (343)
320 PRK04330 hypothetical protein; 20.6 5.1E+02 0.011 21.7 6.7 63 870-938 5-69 (88)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.8e-56 Score=540.01 Aligned_cols=786 Identities=18% Similarity=0.170 Sum_probs=610.9
Q ss_pred hHHHHHHHHhcC-CChhHHhhHHHHHHHhhc-ChhhHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcHH
Q psy15604 3 MVAALVHAISNS-NDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIP 80 (986)
Q Consensus 3 ~~~~lv~~l~~~-~d~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~ 80 (986)
.+..+|+-|++. .+++.++.++..|..++. ++++|..+.+.+ |++|
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~a--------------------------------GaIP 61 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHS--------------------------------QAMP 61 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHcc--------------------------------CcHH
Confidence 467788888754 247778888999999985 566777776421 4566
Q ss_pred HHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccC---cchhH
Q psy15604 81 ELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE---ASRHA 157 (986)
Q Consensus 81 ~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~---~~~~~ 157 (986)
.|+.+|++++...+..++.+|.++. .+++++..++..|+||.|+.+|++++.+.+..|+.+|.+|+.++ .++..
T Consensus 62 ~LV~lL~sg~~~vk~nAaaaL~nLS---~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~ 138 (2102)
T PLN03200 62 LLVSLLRSGTLGAKVNAAAVLGVLC---KEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSK 138 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHh---cCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhh
Confidence 6666666666667777776665554 46777888899999999999999999999999999999999874 34545
Q ss_pred hhhCCchHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCccch-HHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhc
Q psy15604 158 IMNSPQMVAALVHAISNSN--DLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLL 234 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~--~~~~~~~a~~~L~~ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 234 (986)
++...|.++.|+.+|+++. |..+++.++.+|.||+..++++ ..+++.|+||.|+.+|+++++..+..|+.+|.+++.
T Consensus 139 I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Las 218 (2102)
T PLN03200 139 IFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMM 218 (2102)
T ss_pred hhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 5433345799999999753 3446788899999999998776 566899999999999999999999999999999997
Q ss_pred CCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCCh--------HH
Q psy15604 235 HQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDY--------EK 305 (986)
Q Consensus 235 ~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~--------~~ 305 (986)
++++.+..+.+.|+||.|+++|++ .++.++..|+++|.+|+.++++.+..+++.|+++.|++++..++. ..
T Consensus 219 s~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~ 298 (2102)
T PLN03200 219 AFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQA 298 (2102)
T ss_pred CChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchH
Confidence 777789999999999999999976 456899999999999999999999999999999999999986542 23
Q ss_pred HHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCC-HHHHHHHHHHHhcc---ccc--------------cccccc
Q psy15604 306 LLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPS-QRLVQNCLWTLRNL---SDA--------------GTKVSL 367 (986)
Q Consensus 306 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~~~~~~~~L~~l---s~~--------------~~~i~l 367 (986)
+++.+..+|.|++... ...++.|.+.+.+.. ......+.|++..+ .+. ..++.+
T Consensus 299 Lqe~AvwALsNIcgg~--------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L 370 (2102)
T PLN03200 299 LQENAMGALANICGGM--------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL 370 (2102)
T ss_pred HHHHHHHHHHHHhCCc--------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHH
Confidence 5788888988887542 122333433333321 11122233333222 000 112455
Q ss_pred ccCCchH-HHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchh
Q psy15604 368 LFNEIEN-IQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLE 446 (986)
Q Consensus 368 l~~~~~~-~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 446 (986)
++..++. ++..+..+|..+..|+..++.+.+.|+++.|+.++...+.+++..++.++ +.++.
T Consensus 371 lr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL--~~L~~--------------- 433 (2102)
T PLN03200 371 LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRAL--SSLCC--------------- 433 (2102)
T ss_pred hCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHH--HHHhC---------------
Confidence 6666555 48999999999999999999999999999999999998877766555443 32110
Q ss_pred hccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-
Q psy15604 447 EGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA- 525 (986)
Q Consensus 447 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~- 525 (986)
.+.+.+.. ....|++|.|+++|++++...|..|++++++++....
T Consensus 434 -----------------------~~~e~~~a-----------Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 434 -----------------------GKGGLWEA-----------LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred -----------------------CCHHHHHH-----------HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 00111111 2347889999999999999999999999999987654
Q ss_pred cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhh-hhccCChHHHHHhcCCCCHhHHHHHHHHHHHh
Q psy15604 526 SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA-IFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604 (986)
Q Consensus 526 ~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~-i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl 604 (986)
.+..+++. |++|.|+++|.+. +..++++|+|+|.|++.++++... +.+.|++|+|+.+|++++.+++..|+|+|.|+
T Consensus 480 nr~aIiea-GaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 480 SKWAITAA-GGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 57777775 9999999999765 889999999999999996655555 55789999999999999999999999999999
Q ss_pred hcCCCCC-------------------------------------hHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 605 LLHQEGS-------------------------------------KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 605 ~~~~~~~-------------------------------------~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
+.+.+.. +..+...|+++.|+++++++++.++..|+|+|.+++
T Consensus 558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 7443211 011123689999999999999999999999999999
Q ss_pred cCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHH
Q psy15604 648 YGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS--SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLW 725 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~--~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~ 725 (986)
.++++....++..|++++++.++++.+ .+++..++|+|.|++.+. .++..+++.|++++|++++++.+..+...++.
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ 716 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence 998888888999999999999999888 556778999999998653 34467899999999999999999999999999
Q ss_pred HHHHhhccccc--ccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhh-
Q psy15604 726 TLRNLSDAGTK--VDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQ- 802 (986)
Q Consensus 726 ~L~nLs~~~~~--~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~- 802 (986)
+|.|+...+.. .....|.++.|+.++++.++..|+.|+|+|.+++.+.+ .++
T Consensus 717 ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~-------------------------~~~~ 771 (2102)
T PLN03200 717 ALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP-------------------------VDDV 771 (2102)
T ss_pred HHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC-------------------------hhHH
Confidence 99999966542 33456889999999999999999999999986544322 222
Q ss_pred H-HHHHhcCCCCC----cccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHH
Q psy15604 803 Q-NYLVDSGIHSG----VNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITE 877 (986)
Q Consensus 803 ~-~~l~~~~~~~~----L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e 877 (986)
+ .|....|++.+ |...|.+.+.+.+.|+++..+.......+...++.....+.+++++.|.+.+ .+.+|.+++
T Consensus 772 ~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l--~~~~p~~~~ 849 (2102)
T PLN03200 772 LKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL--AEGHPLVQD 849 (2102)
T ss_pred HHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH--HcCChHHHH
Confidence 2 56667777666 6777877777766678887666654444445577788899999999997444 899999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhh
Q psy15604 878 PAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLL 913 (986)
Q Consensus 878 ~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll 913 (986)
+|+.+|..+|.++|. ......+...+.+..+.+-.
T Consensus 850 kai~il~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 884 (2102)
T PLN03200 850 KAIEILSRLCRDQPV-VLGDLIANASKCISSLADRI 884 (2102)
T ss_pred HHHHHHHHHhccChh-HHHHHHhcccchHHHHHHHH
Confidence 999999999998763 23344455555555555443
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.3e-55 Score=537.42 Aligned_cols=800 Identities=18% Similarity=0.148 Sum_probs=629.4
Q ss_pred CcHHHHHHHhcCC--ChhhHHHHHhHHHHHHHhcCCCcchhHHHh-CCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCc
Q psy15604 77 RAIPELIKLLNDE--DQDDADLATRAIPELIKLLNDEDQDDADLA-TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA 153 (986)
Q Consensus 77 g~i~~l~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~ 153 (986)
..+..+++-|.++ +.+.+..+...|..+++ .++++++.+.+ .|++|.|+.+|+++++.++..++.+|.+++.++.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak--~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAK--TREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHh--cChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 3577788888766 56777777666666655 34455666664 9999999999999999999999999999999999
Q ss_pred chhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc---cch-HHHHhcCChHHHHHhhCCCC---HhHHHHHH
Q psy15604 154 SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR---QGL-LAIFKSGGIPALVKLLSSPV---ESVLFYAI 226 (986)
Q Consensus 154 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~---~~~-~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~ 226 (986)
++..|...| .+++|+++|+++ +++.++.|+.+|.+|+.+. .++ ..++..|+||+|+.++++++ ..++..++
T Consensus 91 nk~~Iv~~G-aIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 91 LRVKVLLGG-CIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHcC-ChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 999999876 579999999985 8999999999999999974 333 44668999999999999863 33677889
Q ss_pred HHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHH
Q psy15604 227 TTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKL 306 (986)
Q Consensus 227 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~ 306 (986)
.+|.||+.+.++....+.+.|+++.|+.+|+++++..+..++.+|..++..+++.+..+++.|++|.|+++++++++..+
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~V 248 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHH
Confidence 99999998777777888999999999999999999999999999999998778889999999999999999988766568
Q ss_pred HHHHHHHHHHhhh-CCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHH
Q psy15604 307 LWCTSRVLKVLSV-CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCE 385 (986)
Q Consensus 307 ~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~ 385 (986)
++.|+.+|.+++. +++++..+++.|+++.|++++..++.+... ...+..+++.|+++|.|
T Consensus 249 RE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~-------------------~~~~~~Lqe~AvwALsN 309 (2102)
T PLN03200 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQ-------------------GEFAQALQENAMGALAN 309 (2102)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhc-------------------cccchHHHHHHHHHHHH
Confidence 9999999999986 456788899999999999998764432110 11345678899999999
Q ss_pred HhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHH
Q psy15604 386 LAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQ 465 (986)
Q Consensus 386 l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 465 (986)
++.+. ...++.|..++++..+...... ++|.+... +.
T Consensus 310 Icgg~--------~~ll~~L~~ll~s~rd~~~~ad----a~gALayl-------------------------------l~ 346 (2102)
T PLN03200 310 ICGGM--------SALILYLGELSESPRSPAPIAD----TLGALAYA-------------------------------LM 346 (2102)
T ss_pred HhCCc--------hhhHHHHHHhhcccchHHHHHH----HHhhHHHH-------------------------------HH
Confidence 98653 2356677777766543332211 11111100 00
Q ss_pred hcCCCcHHHHHHHHHHhcCCchhhhh-cCCHHHHHHHhcCCCHH-HHHHHHHHHHHhhhccccchhhhcccCcHHHHHHh
Q psy15604 466 RLTEPSQMLKHAVVNLINYQDDADLA-TRAIPELIKLLNDEDQV-VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHA 543 (986)
Q Consensus 466 ~l~~~~~~~~~a~~~l~~~~~~~~~~-~~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~l 543 (986)
.+..+.+..+ .+. ....+.|++++++.++. ++..+..+|+.+..+...+..+.+ .++++.|+.+
T Consensus 347 l~d~~~~~~~-------------~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~-~daik~LV~L 412 (2102)
T PLN03200 347 VFDSSAESTR-------------AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH-AEAKKVLVGL 412 (2102)
T ss_pred hcCCchhhhh-------------hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh-ccchhhhhhh
Confidence 0000000000 011 23458899999988766 478888888887777766666665 4999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHH
Q psy15604 544 ISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQ 622 (986)
Q Consensus 544 L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~ 622 (986)
+... +.++|..++|+|.+++. +++.+..+.+.|++|.|+++|.++++.+++.|+++|+|++..++..+..+.+.|++|
T Consensus 413 L~~~-~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 413 ITMA-TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred hccC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 9876 68999999999999997 578899999999999999999999999999999999999988888899999999999
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhc
Q psy15604 623 KMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEA 702 (986)
Q Consensus 623 ~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~ 702 (986)
+|+++|.+++++++..++|+|.|++.+.++.+..+.+.|++++|+++|++.+ ...+..+.|+|.+|..+.++.
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~~~d~~------ 564 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVRTADAA------ 564 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhccchh------
Confidence 9999999999999999999999999875555556668899999999999887 566688999999997764422
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc------cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHH
Q psy15604 703 GGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT------KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEAL 776 (986)
Q Consensus 703 g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~------~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~ 776 (986)
.++.|+.++.++++.++..++.+|+|+..... +.....|.++.|..+++++++.+++.|+|+|+|++++++++
T Consensus 565 -~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 565 -TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred -HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence 34778899999999999999999999963222 22234689999999999999999999999999999999999
Q ss_pred HHHHHhc------------CCcccccccccc-----cCCchhhHHHHHhcCCCCC----cccCCCCcccccccccchhhh
Q psy15604 777 VQTIVNA------------GDREEITEPADH-----SVNMWQQQNYLVDSGIHSG----VNTNAPSLTGKEEDMDGDQLM 835 (986)
Q Consensus 777 v~~l~~~------------~~~~~~~e~~~~-----~~~~~~~~~~l~~~~~~~~----L~~~~~~~~~~~~~l~~l~~~ 835 (986)
.+.++.. +.+++++|++|+ .++..++..++++.|++++ |..++.+++... +.++.++
T Consensus 644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~A--l~ALanL 721 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQA--VCALANL 721 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHH--HHHHHHH
Confidence 8876655 778899999999 4567788889999999988 566666665554 6666644
Q ss_pred hhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCC
Q psy15604 836 FEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNP 915 (986)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~ 915 (986)
... ......+...|+++.|. -+..+.+++..+.|+.+|.+++.+.|........+...+.+.+|.++|+.
T Consensus 722 l~~--------~e~~~ei~~~~~I~~Lv--~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 722 LSD--------PEVAAEALAEDIILPLT--RVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HcC--------chHHHHHHhcCcHHHHH--HHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 432 22344566789999999 66678889999999999999999887555444455567888899999998
Q ss_pred CCCchHHHH--HHHHHHhhhhccc--------cchhhhhcCcHHHHHHHHHHHHHHHHhh-----hccCCCcccccCc
Q psy15604 916 PSRWPLVKA--VIGLIRNLALCQA--------NHAPLREYGAIHLLVILLNRAFTDTQRV-----SRTGLFFRSFLGG 978 (986)
Q Consensus 916 ~~~~~~~~~--~~~~l~nl~~~~~--------~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~~~ 978 (986)
. +.+.+.. ++..|.+|++... -.-.+-.++-+..|+.-|...++.+|.- ++++++....+|+
T Consensus 792 ~-~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~ 868 (2102)
T PLN03200 792 T-DLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGD 868 (2102)
T ss_pred C-CcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHH
Confidence 7 5554444 8899999988511 1123334567788877777777777665 5567776666665
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-51 Score=399.55 Aligned_cols=390 Identities=21% Similarity=0.219 Sum_probs=349.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccch
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGL 570 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~ 570 (986)
.+|.+.+-+.++|.+.+..|..-++.+.+.+. +.+.++.. |++|.++++|......-++.+|+|+|.|+++ +....
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIda-GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDA-GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhc-cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 47889999999999999999999999865543 58888886 9999999999766667789999999999999 66677
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCC--HhHHHHHHHHHHHHhc
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN--VKFLAIVTDCLQILAY 648 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~--~~v~~~a~~aL~~L~~ 648 (986)
+.++++|++|.++++|.++..+++++++|+|+|++.+++.+|+.+.+.|++.+++.++.++. ..+.+.++|+|+|||+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 88889999999999999999999999999999999999999999999999999999998864 5899999999999999
Q ss_pred CC-cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 649 GN-QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 649 ~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
+. |++....++ ..++.|.+++...| +++..++||+++||++++..+ +++++.|....|+++|.|++..++.++++.
T Consensus 231 GknP~P~w~~is-qalpiL~KLiys~D-~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 231 GKNPPPDWSNIS-QALPILAKLIYSRD-PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred CCCCCCchHHHH-HHHHHHHHHHhhcC-HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 74 555555555 47889999999988 456679999999999998776 899999999999999999999999999999
Q ss_pred HHHhh---cccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc------------CCcccccc
Q psy15604 727 LRNLS---DAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA------------GDREEITE 791 (986)
Q Consensus 727 L~nLs---~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~------------~~~~~~~e 791 (986)
++|+. |.+++..+..|+++.+..+|+++...+|++|||+||||++|+.+|++++++. .++.++||
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 99998 7888999999999999999999999999999999999999999999999987 56789999
Q ss_pred cccc-----cC--CchhhHHHHHhcCCCCC----cccCCCCcccccccccchh---hhhhhhccc-CCCCcccchhhhcc
Q psy15604 792 PADH-----SV--NMWQQQNYLVDSGIHSG----VNTNAPSLTGKEEDMDGDQ---LMFEMDQGF-GQGFTQDQVTVCQV 856 (986)
Q Consensus 792 ~~~~-----~~--~~~~~~~~l~~~~~~~~----L~~~~~~~~~~~~~l~~l~---~~~~~~~~~-~~~~~~~~~~~~~~ 856 (986)
+||+ ++ +.|++++||+++|++++ |.+.+++++.+. ||+++ ++|+..... ++.-+.|...+++.
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~--LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~A 466 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA--LDAIENILKVGEQDRLRYGKNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh--HHHHHHHHhhhhHHHHhccCCccHHHHHHHhc
Confidence 9999 23 47899999999999998 788999999998 99999 677766543 55556778889999
Q ss_pred CchHHHHHHHHhcCCchhhHHHHHHHHHHhhcCC
Q psy15604 857 GGVEALVQTIVNAGDREEITEPAVCALRHLTSRH 890 (986)
Q Consensus 857 ~g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~ 890 (986)
||+++++ -+|.+.|..++++|+.++..++...
T Consensus 467 ggmd~I~--~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 467 GGMDAIH--GLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred ccHHHHH--HhhhccccHHHHHHHHHHHHHcccc
Confidence 9999999 9999999999999999999998653
No 4
>KOG0166|consensus
Probab=100.00 E-value=1.2e-48 Score=416.39 Aligned_cols=387 Identities=23% Similarity=0.267 Sum_probs=348.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccchh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLL 571 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~ 571 (986)
.+..+..+.++++..+..+...++.+.+.+. +...++.+ |++|.++.+|...+++.++.+|+|+|.|+++ +.+..+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 5677788889999999999999999855544 46777776 9999999999887789999999999999999 778889
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCH-hHHHHHHHHHHHHhcCC
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV-KFLAIVTDCLQILAYGN 650 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~-~v~~~a~~aL~~L~~~~ 650 (986)
.++++|++|.++.++.+++..++++|+|+|+|++.+++.+|+.+.++|++++|+.++..+++ ..++.++|+|+|||++.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999988754 88999999999999986
Q ss_pred -cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q psy15604 651 -QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728 (986)
Q Consensus 651 -~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~ 728 (986)
|.+....++ ..++.|..++++.| +++..++||+++||++++..+ +.+++.|+++.|+.+|.++++.++.+|+++++
T Consensus 227 ~P~P~~~~v~-~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 227 NPSPPFDVVA-PILPALLRLLHSTD-EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred CCCCcHHHHH-HHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 555555555 47889999999998 667789999999999997766 99999999999999999999999999999999
Q ss_pred Hhh---cccccccchhchHHHHHHHhc-cCChhhHHHHHHHHhhhccCcHHHHHHHHhc------------CCccccccc
Q psy15604 729 NLS---DAGTKVDGLESLLQSLVQLLA-SQDINVITCAAGVTVCQVGGVEALVQTIVNA------------GDREEITEP 792 (986)
Q Consensus 729 nLs---~~~~~~~~~~~~l~~L~~ll~-~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~------------~~~~~~~e~ 792 (986)
|++ |.+++.....|+++.|..++. ++...++++|||+||||++|+.+|++.+++. ++++.|||+
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 998 777899999999999999999 5677799999999999999999999999988 789999999
Q ss_pred ccc-----cCCchhhHHHHHhcCCCCC----cccCCCCcccccccccchh---hhhhhhcccCCCCcccchhhhccCchH
Q psy15604 793 ADH-----SVNMWQQQNYLVDSGIHSG----VNTNAPSLTGKEEDMDGDQ---LMFEMDQGFGQGFTQDQVTVCQVGGVE 860 (986)
Q Consensus 793 ~~~-----~~~~~~~~~~l~~~~~~~~----L~~~~~~~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~~~g~~ 860 (986)
+|+ ++|+++|+.||+++|++++ |+|.|++++.++ |++++ ++++..+..+. +++...++++||++
T Consensus 385 awaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~--Ld~l~nil~~~e~~~~~~~--n~~~~~IEe~ggld 460 (514)
T KOG0166|consen 385 AWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVA--LDGLENILKVGEAEKNRGT--NPLAIMIEEAGGLD 460 (514)
T ss_pred HHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHH--HHHHHHHHHHHHHhccccc--cHHHHHHHHccChh
Confidence 999 6889999999999999998 899999999888 88888 55555543322 67778899999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHhhcCC
Q psy15604 861 ALVQTIVNAGDREEITEPAVCALRHLTSRH 890 (986)
Q Consensus 861 ~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~ 890 (986)
+++ .||+|+|++|+++|..++.+++...
T Consensus 461 kiE--~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 461 KIE--NLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHH--HhhccccHHHHHHHHHHHHHhcCCC
Confidence 999 9999999999999999999999875
No 5
>KOG1048|consensus
Probab=100.00 E-value=3.2e-34 Score=315.27 Aligned_cols=347 Identities=25% Similarity=0.270 Sum_probs=278.2
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc--c
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ--E 652 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~--~ 652 (986)
..--+|..+.+|.+.++.++..|+..+.++|+.+...+..+++.|+++.|+.++.+.+.+|+..+||+|+||++++. +
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999864 4
Q ss_pred cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCC--------------CCHH
Q psy15604 653 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH--------------PSQR 718 (986)
Q Consensus 653 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~--------------~~~~ 718 (986)
++.++.+.++++.++++++...+.++++.++.+||||++++..+..++.. ++..|...+-. .+..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 99999999999999999998655788899999999999998777777764 66666664411 1367
Q ss_pred HHHHHHHHHHHhhcccc----cccchhchHHHHHHHhcc----CChhhHHHHHHHHhhhccCcHHHHHHHHhcCCccccc
Q psy15604 719 LVQNCLWTLRNLSDAGT----KVDGLESLLQSLVQLLAS----QDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEIT 790 (986)
Q Consensus 719 v~~~al~~L~nLs~~~~----~~~~~~~~l~~L~~ll~~----~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~ 790 (986)
++.++++||||+++... +++.++|+|+.|+.++++ ++.+-+ .+|||||+++|++|+...+
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K------------~VENcvCilRNLSYrl~~E 457 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSK------------SVENCVCILRNLSYRLEAE 457 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccch------------hHHHHHHHHhhcCchhhhh
Confidence 99999999999996443 688899999999999874 233333 7899999999999985322
Q ss_pred ccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcc---------cchhhhccCchHH
Q psy15604 791 EPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQ---------DQVTVCQVGGVEA 861 (986)
Q Consensus 791 e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~ 861 (986)
-+ ..+.+.. ...+. +.... + -++..+||+..+.. ..+.-..++|++|
T Consensus 458 vp-----~~~~~~~--~~~~~---~~~~~-----------~---~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 458 VP-----PKYRQVL--ANIAR---LPGVG-----------P---PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cC-----HhhhhHh--hcccc---cccCC-----------C---cccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 11 1111111 11111 11100 0 01344555322221 1223356789999
Q ss_pred HHH--------HHHhcCCchhhHHHHHHHHHHhhcCC-chHHHHHHHH-HhhhChHHHHHhhCCCCCchHHHHHHHHHHh
Q psy15604 862 LVQ--------TIVNAGDREEITEPAVCALRHLTSRH-VESEMAQNAV-RLNYGIQTIVNLLNPPSRWPLVKAVIGLIRN 931 (986)
Q Consensus 862 L~~--------~~l~~~~~~~v~e~a~~~l~~l~~~~-~~~~~~~~~v-~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~n 931 (986)
||| .+++.+.|+.|.|+++|+|||++++. +|+++.+..| ++++|+|+|++||+.+ ++.|+++++++|||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRN 592 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhh
Confidence 998 67778999999999999999999999 7887777777 9999999999999999 89999999999999
Q ss_pred hhhccccchhhhhcCcHHHHHHHHHHHHH
Q psy15604 932 LALCQANHAPLREYGAIHLLVILLNRAFT 960 (986)
Q Consensus 932 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 960 (986)
|++|+.||++|+++ ++|+|++.|+...+
T Consensus 593 ls~d~rnk~ligk~-a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 593 LSRDIRNKELIGKY-AIPDLVRCLPGSGP 620 (717)
T ss_pred hccCchhhhhhhcc-hHHHHHHhCcCCCC
Confidence 99999999999977 57999999987655
No 6
>KOG4224|consensus
Probab=100.00 E-value=2.2e-31 Score=262.81 Aligned_cols=401 Identities=21% Similarity=0.248 Sum_probs=340.6
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
...+.+.-++++.+...+..+..++++++- ..++...+++.+++..|+.-+-++..++++.+..+++||+..++++.
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAV---n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAV---NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhcccee---ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence 477888889999999998888887766653 45556677889999999988888888999999999999999999999
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
.|+..|+ +.++.+ |.+.+|..+++.+..+|.+++...++++.++..|++|.|+.++.+++++++.+|+.++.|++ -+
T Consensus 162 kiA~sGa-L~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa-Vd 238 (550)
T KOG4224|consen 162 KIARSGA-LEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA-VD 238 (550)
T ss_pred hhhhccc-hhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh-hh
Confidence 9999987 599999 66558999999999999999999999999999999999999999999999999999999999 55
Q ss_pred CCchHHHHHcC--cHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAG--GLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVL 314 (986)
Q Consensus 237 ~~~~~~i~~~g--~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL 314 (986)
...|+.+.+.+ .++.|+.++++.+++++-.+..+|.+|+. +.+.+..+++.|++|.++++++++.-+ ...+...++
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCI 316 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGP-LILASVACI 316 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHH
Confidence 66777788888 89999999999999999999999999998 456888899999999999999887665 445566788
Q ss_pred HHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhh-ChhhH
Q psy15604 315 KVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQ-DKEGA 393 (986)
Q Consensus 315 ~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~-~~~~~ 393 (986)
++++.++.|...+.++|.+.+|+++|.. .+++++|..|...|.+|+. .+.++
T Consensus 317 rnisihplNe~lI~dagfl~pLVrlL~~---------------------------~dnEeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 317 RNISIHPLNEVLIADAGFLRPLVRLLRA---------------------------GDNEEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred hhcccccCcccceecccchhHHHHHHhc---------------------------CCchhhhhhHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999976 5678899999999999985 67899
Q ss_pred HHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHH
Q psy15604 394 ETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQM 473 (986)
Q Consensus 394 ~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 473 (986)
+.+.+.|+++.++.++.++...++....++++...+....
T Consensus 370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~---------------------------------------- 409 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND---------------------------------------- 409 (550)
T ss_pred HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc----------------------------------------
Confidence 9999999999999999999999988888777544322110
Q ss_pred HHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcc-----cCcHHHHHHhhcCCC
Q psy15604 474 LKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS-----PQMVAALVHAISNSN 548 (986)
Q Consensus 474 ~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-----~~~i~~L~~lL~~~~ 548 (986)
...-.+.|.+|.|+.+..+.+.+++-.++.+|.|++++...-..+++. .|+-..|+.++.+.
T Consensus 410 ------------k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~- 476 (550)
T KOG4224|consen 410 ------------KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASH- 476 (550)
T ss_pred ------------HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-
Confidence 011123788999999999999999999999999999876643222221 24555677777554
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy15604 549 DLETTKGAVGTLHNLSH 565 (986)
Q Consensus 549 ~~~~~~~a~~~L~~ls~ 565 (986)
+...+.-+.|++..|..
T Consensus 477 ~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 477 ELTFRHIARWTIQQLLE 493 (550)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788889999999976
No 7
>KOG4224|consensus
Probab=100.00 E-value=9.5e-31 Score=258.35 Aligned_cols=438 Identities=20% Similarity=0.238 Sum_probs=354.1
Q ss_pred HHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHh
Q psy15604 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 158 (986)
Q Consensus 79 i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i 158 (986)
+..+.-+.-++..+.+..+.-+...+.. .--.-+....+.+...++.+.++.++..+..+++|++.+-+++..|
T Consensus 49 lraltvL~ySDnlnlqrsaalafAeite------k~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~li 122 (550)
T KOG4224|consen 49 LRALTVLKYSDNLNLQRSAALAFAEITE------KGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLI 122 (550)
T ss_pred cchheeeeeccccccchHHHHHHHHHHH------HHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEE
Confidence 4444444445555555555444433332 0111134456778888999999999999999999999999999999
Q ss_pred hhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCC
Q psy15604 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG 238 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 238 (986)
++-+|+ +.|+..+.. +..+++..+..++.||+..++++..+...|++.++.++-++.+..++.++..+|.|+. +..+
T Consensus 123 v~l~Gl-~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~E 199 (550)
T KOG4224|consen 123 VSLLGL-DLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRE 199 (550)
T ss_pred EeccCh-HHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhh
Confidence 999885 877766665 5778999999999999999999999999999999999888999999999999999999 7778
Q ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCC--CHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15604 239 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQ--GPVELVRIMRSYDYEKLLWCTSRVLKV 316 (986)
Q Consensus 239 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g--~v~~L~~ll~~~~~~~~~~~a~~aL~~ 316 (986)
+|+.++.+|++|.|+.++++.+..++..++.++.+++. +...|..+++.+ .++.|+.++.++++. ++..+.-+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~k-vkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDK-VKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChH-HHHHHHHHHhh
Confidence 89999999999999999999999999999999999998 566888899988 999999999998875 88889999999
Q ss_pred hhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHH
Q psy15604 317 LSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETI 396 (986)
Q Consensus 317 Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 396 (986)
|+...+.+..++++|.+|.+++++.++.-....+. ..++.|++-++-+...+
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilas----------------------------VaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILAS----------------------------VACIRNISIHPLNEVLI 329 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHH----------------------------HHHHhhcccccCcccce
Confidence 99999999999999999999999977554433322 22334444444444444
Q ss_pred HhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHH
Q psy15604 397 EAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKH 476 (986)
Q Consensus 397 ~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 476 (986)
+++|.+.+|++++
T Consensus 330 ~dagfl~pLVrlL------------------------------------------------------------------- 342 (550)
T KOG4224|consen 330 ADAGFLRPLVRLL------------------------------------------------------------------- 342 (550)
T ss_pred ecccchhHHHHHH-------------------------------------------------------------------
Confidence 4555555555544
Q ss_pred HHHHHhcCCchhhhhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhhh-ccccchhhhcccCcHHHHHHhhcCCCCHHHHH
Q psy15604 477 AVVNLINYQDDADLATRAIPELIKLLNDE-DQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTK 554 (986)
Q Consensus 477 a~~~l~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~ 554 (986)
+-. ++++|..|...|++++. .+.++..+.++ |.|+.+.+++.+. ...+|.
T Consensus 343 --------------------------~~~dnEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD~-pvsvqs 394 (550)
T KOG4224|consen 343 --------------------------RAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLDG-PVSVQS 394 (550)
T ss_pred --------------------------hcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhcC-ChhHHH
Confidence 433 34578888889999966 55677778776 9999999998765 788999
Q ss_pred HHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHH----hCcH-HHHHHhhc
Q psy15604 555 GAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL----AGGL-QKMVLLLG 629 (986)
Q Consensus 555 ~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~----~g~v-~~Lv~ll~ 629 (986)
+...++..|+..+..+..+.+.|.+|.|+.+..+.+++++-+++.+|.|++.+.+.+...+.- .+++ ..|+.++.
T Consensus 395 eisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~ 474 (550)
T KOG4224|consen 395 EISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLA 474 (550)
T ss_pred HHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887765544321 2333 45888888
Q ss_pred CCCHhHHHHHHHHHHHHhcCC
Q psy15604 630 RNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 630 ~~~~~v~~~a~~aL~~L~~~~ 650 (986)
+....+...+.|++-.|..++
T Consensus 475 S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 475 SHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhC
Confidence 988999999999999998764
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.3e-29 Score=248.06 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=253.6
Q ss_pred hhhhhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC
Q psy15604 487 DADLATRAIPELIKLLN-DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 487 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~ 565 (986)
+..+..|.+|.++++|. ....-.+.+|+|+|.|+++.......++-..|.+|.++++|.++ +.++++.+.|+|.|++.
T Consensus 108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAG 186 (526)
T COG5064 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAG 186 (526)
T ss_pred hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccC
Confidence 45567999999999995 45566788999999999998877666666679999999999775 78999999999999999
Q ss_pred -CccchhhhhccCChHHHHHhcCCCCH--hHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHH
Q psy15604 566 -HRQGLLAIFKSGGIPALVKLLSSPVE--SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDC 642 (986)
Q Consensus 566 -~~~~~~~i~~~~~i~~Lv~lL~~~~~--~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~a 642 (986)
++..+..+.++|++++++.++.+... ++.+.+.|+|.|||....+..+.-.-..++|.|.+++.+.++++..-|||+
T Consensus 187 DS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred CchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 55678889999999999999987655 789999999999998754433333335779999999999999999999999
Q ss_pred HHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHH
Q psy15604 643 LQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQ 721 (986)
Q Consensus 643 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~ 721 (986)
++.|+.+..+....+++.|.+..|+++|.+++ ..++.-+.+...|+..+++.. +.++.+|++..+..+|.++...+++
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 99999987788888999999999999999987 667778889999998886655 8999999999999999999999999
Q ss_pred HHHHHHHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 722 NCLWTLRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 722 ~al~~L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
.++|++.|+....+ +.+.+.+++|.|++++.+.+..++++|||+++|.+.|.-++-..++.+
T Consensus 346 EaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred hhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 99999999995444 667888999999999999999999999999999988765444444444
No 9
>KOG0166|consensus
Probab=99.96 E-value=1.9e-26 Score=246.97 Aligned_cols=396 Identities=18% Similarity=0.215 Sum_probs=320.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhc--cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCC-ChH
Q psy15604 249 LQKMVLLLGRNNVKFLAIVTDCLQILAY--GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKP 325 (986)
Q Consensus 249 i~~L~~ll~~~~~~~~~~a~~aL~~La~--~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~-~~~ 325 (986)
.+.++..+.++++..+..+...+..+-+ .+|.... +...|.++.++.++...+.+.++..++-+|.+++.... ...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~-vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDE-VIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHH-HHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 6677777778777777777777776643 3344444 45559999999999977766688989999999986544 446
Q ss_pred HHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhC-hhhHHHHHhcCCcHH
Q psy15604 326 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQD-KEGAETIEAEGATAP 404 (986)
Q Consensus 326 ~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~l~~ 404 (986)
.++++|+++.++.++.+++.. +++.|+.+|+|++.+ +.+|..+.+.|++++
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~----------------------------v~eQavWALgNIagds~~~Rd~vl~~g~l~p 198 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSAD----------------------------VREQAVWALGNIAGDSPDCRDYVLSCGALDP 198 (514)
T ss_pred ccccCCchHHHHHHhcCCcHH----------------------------HHHHHHHHHhccccCChHHHHHHHhhcchHH
Confidence 688999999999888775554 555555566666644 588889999999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcC
Q psy15604 405 LTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINY 484 (986)
Q Consensus 405 Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~ 484 (986)
|+.++.....
T Consensus 199 Ll~~l~~~~~---------------------------------------------------------------------- 208 (514)
T KOG0166|consen 199 LLRLLNKSDK---------------------------------------------------------------------- 208 (514)
T ss_pred HHHHhccccc----------------------------------------------------------------------
Confidence 9988764432
Q ss_pred CchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q psy15604 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS 564 (986)
Q Consensus 485 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls 564 (986)
......++|+|.|++++..+...+-.-..++|.|..++.+. |+++...|+|++..|+
T Consensus 209 ----------------------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 209 ----------------------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLT 265 (514)
T ss_pred ----------------------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 01234566777777776543222222236789999988775 8999999999999999
Q ss_pred C-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhc-CCCHhHHHHHHHH
Q psy15604 565 H-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG-RNNVKFLAIVTDC 642 (986)
Q Consensus 565 ~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~-~~~~~v~~~a~~a 642 (986)
. .++....+++.|.+|.|+.+|.++...++..|+.+++|++..++...+.+...|+++.|..++. ++...++..|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 7 7788899999999999999999999999999999999999999999999999999999999998 4566789999999
Q ss_pred HHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCC--chhHHhcCcHHHHHHhhCCCCHHHH
Q psy15604 643 LQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN--KPAIVEAGGMQALAMHLGHPSQRLV 720 (986)
Q Consensus 643 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~--~~~l~~~g~~~~L~~ll~~~~~~v~ 720 (986)
++|++.++++....+++.+.++.|+.+|+..+ ..++..++|+++|++.+... -..+++.|.++.|+.+|..++.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 99999999999999999999999999999998 66778899999999666433 2889999999999999999999999
Q ss_pred HHHHHHHHHhhccccc-----------ccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 721 QNCLWTLRNLSDAGTK-----------VDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 721 ~~al~~L~nLs~~~~~-----------~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
..++-+|.||-..+.+ +....|.++.+-.+-.+++.++.+.|-.+|.
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999843321 3344588899888888889999999998887
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=3.8e-24 Score=243.38 Aligned_cols=395 Identities=19% Similarity=0.219 Sum_probs=321.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHH
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL 245 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 245 (986)
+.+-.+++. .....+.|...|.|++.++.....+.+.|+|+.|+++|++++.++...++..|.+|+ ...+++..+.+
T Consensus 253 kk~~~l~~k--QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~ 329 (708)
T PF05804_consen 253 KKLQTLIRK--QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAE 329 (708)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 444444554 445667888899999999999999999999999999999999999999999999999 55568999999
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChH
Q psy15604 246 AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP 325 (986)
Q Consensus 246 ~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 325 (986)
.|+++.|.+++.+++...+..+..+|.||++ +++.|..+++.|.+|.|+.++..++ .+..+..+|+++|..++++.
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDDEARS 405 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCHhhHH
Confidence 9999999999999999999999999999999 6779999999999999999998754 34567899999999888989
Q ss_pred HHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHH
Q psy15604 326 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPL 405 (986)
Q Consensus 326 ~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~L 405 (986)
.+...++++.+++++.+ .+.+.++..++..+.|++.++.+.+.+++.|+++.|
T Consensus 406 ~f~~TdcIp~L~~~Ll~---------------------------~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L 458 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLE---------------------------NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSL 458 (708)
T ss_pred HHhhcchHHHHHHHHHh---------------------------CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHH
Confidence 99999999999988754 334456667788899999999999999999999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCC
Q psy15604 406 TDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQ 485 (986)
Q Consensus 406 v~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~ 485 (986)
+.......+.. +..+ +.++. .| ....+..+
T Consensus 459 ~~ra~~~~D~l---LlKl--IRNiS---~h-----------------------------------~~~~k~~f------- 488 (708)
T PF05804_consen 459 MKRALKTRDPL---LLKL--IRNIS---QH-----------------------------------DGPLKELF------- 488 (708)
T ss_pred HHHHHhcccHH---HHHH--HHHHH---hc-----------------------------------CchHHHHH-------
Confidence 98876554332 1111 11110 00 00001111
Q ss_pred chhhhhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q psy15604 486 DDADLATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNL 563 (986)
Q Consensus 486 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~-~~~~~~~~a~~~L~~l 563 (986)
.+-+..+++.+.. ++++...+++.+|+|+...+.....++.+.+++|.+.+.|..+ ..+++..+++..++.+
T Consensus 489 ------~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 489 ------VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred ------HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 1225566666654 4688899999999999887767777777679999999999654 3467899999999999
Q ss_pred hCCccchhhhhccCChHHHHHhcCC--CCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHH
Q psy15604 564 SHHRQGLLAIFKSGGIPALVKLLSS--PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTD 641 (986)
Q Consensus 564 s~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~ 641 (986)
+.++.....+.+.|.++.|+.+|+. .|+++..+.+.+++.+..+.+.....+.+.+++..|++++.+.|+.+++.|-.
T Consensus 563 a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 563 ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDN 642 (708)
T ss_pred HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHH
Confidence 9988999999999999999999965 56889999999999999887655555566788888999999999999999999
Q ss_pred HHHHHhcCC
Q psy15604 642 CLQILAYGN 650 (986)
Q Consensus 642 aL~~L~~~~ 650 (986)
+|-.++...
T Consensus 643 ~Ldii~e~d 651 (708)
T PF05804_consen 643 ALDIIAEYD 651 (708)
T ss_pred HHHHHHHhC
Confidence 998888754
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=3.1e-22 Score=227.92 Aligned_cols=524 Identities=16% Similarity=0.169 Sum_probs=393.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC--CCHHHHHHHHHHHHhhccCccchH
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS--NDLETTKGAVGTLHNLSHHRQGLL 199 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~~a~~~L~~ls~~~~~~~ 199 (986)
-+...+.+|-.+. .-+..+...+..||.+++|-+.+.....++.+|...|+.. .+.+.....+.+...+|...+.+.
T Consensus 124 ~~d~yiE~lYe~~-~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~ 202 (708)
T PF05804_consen 124 DLDEYIELLYEDI-PEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHP 202 (708)
T ss_pred HHHHHHHHHhccc-HHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456677776553 4477788999999999999999998877889999999752 366777777888888888888888
Q ss_pred HHHhcCChHHHHHhhCCCC--HhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 200 AIFKSGGIPALVKLLSSPV--ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
.+....+=...++++...- .+....-+......+...+..+....+ ..+.+-.++ ...+.+...+...|.|||.
T Consensus 203 ~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~--~~kk~~~l~-~kQeqLlrv~~~lLlNLAe- 278 (708)
T PF05804_consen 203 ILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEK--ELKKLQTLI-RKQEQLLRVAFYLLLNLAE- 278 (708)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHhc-
Confidence 8887766666666665321 111111122222222222222222211 123333333 3445666788889999998
Q ss_pred ChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhc
Q psy15604 278 NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRN 357 (986)
Q Consensus 278 ~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ 357 (986)
++.+...+...|+++.|+++|.+.+.+ +...+..+|..||...+|+..|.+.|+++.|.+++.+
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ldr~n~e-llil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s--------------- 342 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLDRENEE-LLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS--------------- 342 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC---------------
Confidence 566888899999999999999987765 8888999999999999999999999999999998865
Q ss_pred ccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccccc
Q psy15604 358 LSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRG 437 (986)
Q Consensus 358 ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~ 437 (986)
+++.++..+.++|.||+.|++.|..|+..|.+|.|+.++.+++.
T Consensus 343 -------------~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~----------------------- 386 (708)
T PF05804_consen 343 -------------ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNF----------------------- 386 (708)
T ss_pred -------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCch-----------------------
Confidence 45668889999999999999999999999999999999875431
Q ss_pred ccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy15604 438 CLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMV 517 (986)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 517 (986)
+..++.+|
T Consensus 387 ------------------------------------------------------------------------~~val~iL 394 (708)
T PF05804_consen 387 ------------------------------------------------------------------------REVALKIL 394 (708)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 11233455
Q ss_pred HHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHH
Q psy15604 518 HQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYA 597 (986)
Q Consensus 518 ~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a 597 (986)
++++.++..+..+..+ +.+|.+++++-..+++.+..+.++.+.|++.++.+...+.+.|+++.|+...-...+ ...
T Consensus 395 y~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lL 470 (708)
T PF05804_consen 395 YNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLL 470 (708)
T ss_pred HHhccCHhhHHHHhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHH
Confidence 6666666555555554 789999998866667778888999999999999999999999999999987543332 223
Q ss_pred HHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC-CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC-Ch
Q psy15604 598 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY-DY 675 (986)
Q Consensus 598 ~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~ 675 (986)
+..++|++.+.++.+..+. +.+..|+.++..+ ++++...+.++|+||...+.+....+-+.+.++.+..+|..+ ..
T Consensus 471 lKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~ 548 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE 548 (708)
T ss_pred HHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 4689999998876666554 6788888888764 788999999999999986544444555668899999999765 22
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCC--CCHHHHHHHHHHHHHhhcccc---cccchhchHHHHHHH
Q psy15604 676 EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH--PSQRLVQNCLWTLRNLSDAGT---KVDGLESLLQSLVQL 750 (986)
Q Consensus 676 ~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~al~~L~nLs~~~~---~~~~~~~~l~~L~~l 750 (986)
+++.-.+...++.++..+.....+.+.|.++.|+.++.. .+..++...++++..+...+. .+....++...|+.+
T Consensus 549 dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL 628 (708)
T PF05804_consen 549 DDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDL 628 (708)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHH
Confidence 345556667888888877777888899999999999976 458899999999999985443 233446899999999
Q ss_pred hccCChhhHHHHHHHHhhhccCcHHHHHHH
Q psy15604 751 LASQDINVITCAAGVTVCQVGGVEALVQTI 780 (986)
Q Consensus 751 l~~~~~~i~~~a~~~L~ni~~g~~~~v~~l 780 (986)
+++.|+.+|+.|-.+|.=|+...++-...+
T Consensus 629 ~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 629 MHDKNAEIRKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 999999999999999975555555544444
No 12
>KOG1048|consensus
Probab=99.80 E-value=7.2e-18 Score=186.88 Aligned_cols=441 Identities=21% Similarity=0.206 Sum_probs=295.5
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChh--hHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE--SKL 283 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~--~~~ 283 (986)
-+|-.+.+|.+.++.++.+|+..|..+|.++...+..+.+.|+|+.|+.+|++.+.+++..++.+|.||.+++.. ++.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 456778899999999999999999999999999999999999999999999999999999999999999986555 899
Q ss_pred HHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc
Q psy15604 284 IILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT 363 (986)
Q Consensus 284 ~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~ 363 (986)
.+.+.++++.++++++...+.++++.+..+||||+.++..+..++ ...+..|..-.-.+.. +. ..++
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~S-----------gw-~~~~ 380 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHS-----------GW-EEEP 380 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhccccc-----------cc-CCCC
Confidence 999999999999999986555699999999999998854443333 2334444332211000 00 0000
Q ss_pred ccccccCCchHHHHHHHHHHHHHhh-ChhhHHHHHhc-CCcHHHHHHhcc-------CchhHHHHHHHHHHHHhhccccc
Q psy15604 364 KVSLLFNEIENIQRVAAGLLCELAQ-DKEGAETIEAE-GATAPLTDLLHS-------RNEGVEILIQGVHKIFKIHKINI 434 (986)
Q Consensus 364 ~i~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~-g~l~~Lv~ll~~-------~~~~~~~~~~~~~al~~~~~~~~ 434 (986)
.. ..-...++-.+++++|.|++. ..+.|+.|.+. |.+..|+..++. .+..++...+... ++.-
T Consensus 381 ~~--~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilR------NLSY 452 (717)
T KOG1048|consen 381 AP--RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILR------NLSY 452 (717)
T ss_pred cc--cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHh------hcCc
Confidence 00 112245677899999999986 56888888875 678888887763 1122222222111 1110
Q ss_pred cccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHH-HHHHHhcCCCHHHHHH-
Q psy15604 435 HRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIP-ELIKLLNDEDQVVVSQ- 512 (986)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~-~L~~ll~~~~~~~~~~- 512 (986)
.....+ .+...+.+... -... ..+. + ..+.+........-..
T Consensus 453 rl~~Ev-------------------p~~~~~~~~~~-----------~~~~-----~~~~-~~~~~gcf~~k~~k~~~~~ 496 (717)
T KOG1048|consen 453 RLEAEV-------------------PPKYRQVLANI-----------ARLP-----GVGP-PAESVGCFGFKKRKSDDNC 496 (717)
T ss_pred hhhhhc-------------------CHhhhhHhhcc-----------cccc-----cCCC-cccccccccchhhhchhcc
Confidence 000000 00001111100 0000 0111 1 1111110000000000
Q ss_pred HHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc-----cchhhh-hccCChHHHHHhc
Q psy15604 513 AAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR-----QGLLAI-FKSGGIPALVKLL 586 (986)
Q Consensus 513 a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~-----~~~~~i-~~~~~i~~Lv~lL 586 (986)
-..-+-.....+.....+.. +.+|.....+|..+.++.+.+.++++|.|++... ..+..+ .+..++|.++++|
T Consensus 497 ~~~~~pe~~~~pkG~e~Lw~-p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll 575 (717)
T KOG1048|consen 497 DDLPIPERATAPKGSEWLWH-PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELL 575 (717)
T ss_pred cccCCcccccCCCCceeeec-HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHH
Confidence 00000001111222233333 4678887888877778999999999999998732 223334 6799999999999
Q ss_pred CCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC------CHhHHHHHHHHHHHHhcCCcccHHHHHhC
Q psy15604 587 SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN------NVKFLAIVTDCLQILAYGNQESKLIILAS 660 (986)
Q Consensus 587 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~------~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 660 (986)
+.+++.+.+.++.+|+||+.+.. .++.+- .++++.|++.|... +.++...+|.+|.|+...+..+...+++.
T Consensus 576 ~~~~~~vv~s~a~~LrNls~d~r-nk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~ 653 (717)
T KOG1048|consen 576 RNDDSDVVRSAAGALRNLSRDIR-NKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEI 653 (717)
T ss_pred hcCCchHHHHHHHHHhhhccCch-hhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhc
Confidence 99999999999999999997654 555554 78999999999763 36889999999999999989999999999
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHH
Q psy15604 661 QGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQ 706 (986)
Q Consensus 661 ~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~ 706 (986)
++++.|+.+.++...++..++++.+|..|=...+.+..+-+.|+-+
T Consensus 654 ~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q 699 (717)
T KOG1048|consen 654 KGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQ 699 (717)
T ss_pred cChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHH
Confidence 9999999999987666777787777777755555555555555443
No 13
>KOG4500|consensus
Probab=99.79 E-value=1.1e-16 Score=162.84 Aligned_cols=443 Identities=16% Similarity=0.096 Sum_probs=321.8
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHH----HhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHH
Q psy15604 176 NDLETTKGAVGTLHNLSHHRQGLLAI----FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQK 251 (986)
Q Consensus 176 ~~~~~~~~a~~~L~~ls~~~~~~~~i----~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~ 251 (986)
.+..++..+..+++..+.++..+..+ ++.|.++.|.+..++++.++-..+.++|+|+|+.+.+.|.++.+.||-+.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 35567777888888888886655555 44577888888888999999999999999999999999999999999888
Q ss_pred HHHHhcc-------CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCCh-HHHHHHHHHHHHHhhh--CC
Q psy15604 252 MVLLLGR-------NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDY-EKLLWCTSRVLKVLSV--CS 321 (986)
Q Consensus 252 L~~ll~~-------~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~a~~aL~~Ls~--~~ 321 (986)
++..|+. .+.++...++..|.|...++.+.+..+.+.|+++.|..++.-+-. ..+.+.......++.. ++
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8888864 234677777888888888999999999999999999988875422 2244433333333321 11
Q ss_pred CChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q psy15604 322 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGA 401 (986)
Q Consensus 322 ~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~ 401 (986)
.-.+...+......+++++.+ +-.+++.+.+..+|...+.++..+-.+++.|.
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~---------------------------~v~~d~~eM~feila~~aend~Vkl~la~~gl 266 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPS---------------------------MVREDIDEMIFEILAKAAENDLVKLSLAQNGL 266 (604)
T ss_pred hhhhhhccchHHHHHHHHHHH---------------------------hhccchhhHHHHHHHHHhcCcceeeehhhcch
Confidence 112223333444445454433 34567788899999999999999999999999
Q ss_pred cHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHH
Q psy15604 402 TAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNL 481 (986)
Q Consensus 402 l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l 481 (986)
+..++.+++.........-.. ++
T Consensus 267 ~e~~~~lv~~~k~~t~k~d~~---------------------------------------------------------~l 289 (604)
T KOG4500|consen 267 LEDSIDLVRNMKDFTKKTDML---------------------------------------------------------NL 289 (604)
T ss_pred HHHHHHHHHhcccccchHHHH---------------------------------------------------------HH
Confidence 999999887533221110000 00
Q ss_pred hcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy15604 482 INYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 561 (986)
Q Consensus 482 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~ 561 (986)
. ..+..+.-++..+|. ..+.+...+.+++.+.+.+.+. +.+.+..++-+++
T Consensus 290 ~----------k~~~el~vllltGDe------------------SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~Laig 340 (604)
T KOG4500|consen 290 F----------KRIAELDVLLLTGDE------------------SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIG 340 (604)
T ss_pred H----------HhhhhHhhhhhcCch------------------HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHH
Confidence 0 001222223333333 2334444455788888888765 7889999999999
Q ss_pred HhhCCccchhhhhccCChHHHHHhcC-----CCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHH
Q psy15604 562 NLSHHRQGLLAIFKSGGIPALVKLLS-----SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFL 636 (986)
Q Consensus 562 ~ls~~~~~~~~i~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~ 636 (986)
|++..++++..+++.+.+..|+.+|. +++.+++..++.+|+|+.- +..++..+...|+++.++..++...|.+.
T Consensus 341 NfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvteaIL~~lk~~~ppv~ 419 (604)
T KOG4500|consen 341 NFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVTEAILLQLKLASPPVT 419 (604)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchHHHHHHHHHhcCCcch
Confidence 99999999999999999999999884 3456789999999999994 44577778889999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccHHHHHh-CCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc---hhHHhcCcHHHHHHhh
Q psy15604 637 AIVTDCLQILAYGNQESKLIILA-SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK---PAIVEAGGMQALAMHL 712 (986)
Q Consensus 637 ~~a~~aL~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~---~~l~~~g~~~~L~~ll 712 (986)
..-..+++.+..+.+-...++.+ ...++.|+..-+++|+..+.....+.+.-+-.+...+ ..+.+.|++...+..+
T Consensus 420 fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~ 499 (604)
T KOG4500|consen 420 FKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMF 499 (604)
T ss_pred HHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHH
Confidence 88888998887653323334433 2346778888888887766666667776665553332 5667789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q psy15604 713 GHPSQRLVQNCLWTLRNLSD 732 (986)
Q Consensus 713 ~~~~~~v~~~al~~L~nLs~ 732 (986)
...+-..+..++-+|.-++.
T Consensus 500 t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 500 TKNHINMQNEALVALLSTES 519 (604)
T ss_pred HHhhHHHhHHHHHHHHHHHH
Confidence 98888899999988887773
No 14
>KOG2122|consensus
Probab=99.75 E-value=1.2e-16 Score=183.25 Aligned_cols=262 Identities=22% Similarity=0.229 Sum_probs=214.1
Q ss_pred HHHHHHHHhhCCccchhhhhccCChHHHHHhcCCC------------CHhHHHHHHHHHHHhhcCCCCChHHHH-HhCcH
Q psy15604 555 GAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP------------VESVLFYAITTLHNLLLHQEGSKMAVR-LAGGL 621 (986)
Q Consensus 555 ~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~------------~~~v~~~a~~aL~nl~~~~~~~~~~v~-~~g~v 621 (986)
.|..+|..++.+++++..+.+.|++..+-+|++-. ...++.++..+|.||.+....++..+. ..|.+
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 56778888899999999999999999988877421 136899999999999998887665544 67889
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHhcCCcc-cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCCchhH
Q psy15604 622 QKMVLLLGRNNVKFLAIVTDCLQILAYGNQE-SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-SSNKPAI 699 (986)
Q Consensus 622 ~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-~~~~~~l 699 (986)
..+|..|.+..++++...+.+|+||+|.-.. .+..+-+.|.+..|...-.....|..+.++..+||||+.+ .+||..|
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 9999999999999999999999999996433 4555556667888888654444477778999999999655 7888777
Q ss_pred Hh-cCcHHHHHHhhCCC----CHHHHHHHHHHHHHhhcccc------cccchhchHHHHHHHhccCChhhHHHHHHHHhh
Q psy15604 700 VE-AGGMQALAMHLGHP----SQRLVQNCLWTLRNLSDAGT------KVDGLESLLQSLVQLLASQDINVITCAAGVTVC 768 (986)
Q Consensus 700 ~~-~g~~~~L~~ll~~~----~~~v~~~al~~L~nLs~~~~------~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~n 768 (986)
.. .|++..|+..|... ...|+.++-++|||+|+... |+...++++..|++.|.++.-.++..+|++|+|
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 66 78999999999754 36899999999999994332 456678999999999999999999999999995
Q ss_pred hccCcHHHHHHHHhcCCcccccccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcc
Q psy15604 769 QVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQ 848 (986)
Q Consensus 769 i~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 848 (986)
+.+ .+ ..
T Consensus 557 LSA----------------------------------------------R~---------------------------p~ 563 (2195)
T KOG2122|consen 557 LSA----------------------------------------------RS---------------------------PE 563 (2195)
T ss_pred hhc----------------------------------------------CC---------------------------HH
Confidence 433 33 34
Q ss_pred cchhhhccCchHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCc
Q psy15604 849 DQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHV 891 (986)
Q Consensus 849 ~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~ 891 (986)
.+..+++.|.+..|. .|.++++..|.+.++.+|+|+.+..|
T Consensus 564 DQq~LwD~gAv~mLr--nLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 564 DQQMLWDDGAVPMLR--NLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHhcccHHHHH--HHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 556778888999999 88999999999999999999987653
No 15
>KOG2122|consensus
Probab=99.69 E-value=9.3e-15 Score=168.09 Aligned_cols=388 Identities=17% Similarity=0.139 Sum_probs=267.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCCh--HHHHHHHHHHHHHhhhC-CCChHHH
Q psy15604 251 KMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDY--EKLLWCTSRVLKVLSVC-SSNKPAI 327 (986)
Q Consensus 251 ~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~--~~~~~~a~~aL~~Ls~~-~~~~~~i 327 (986)
.|+.++...+..... ..+..++. +++.+..+...|.++.|++++.-++. ...+..+-.+|.++..+ ++.+..=
T Consensus 201 sllsml~t~D~ee~a---r~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEEMA---RTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCHHHHH---HHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 666777665543332 44555555 67889999999999999999987654 34566677889998743 3333333
Q ss_pred HHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHH-HHHHHHHHHhhChhhHHHHHhcCCcHHHH
Q psy15604 328 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQR-VAAGLLCELAQDKEGAETIEAEGATAPLT 406 (986)
Q Consensus 328 ~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv 406 (986)
.+..+++.|-++. .+|-..-..+-..++. ......+.+. .|..+|..+++|++.|..|.+.|++..+-
T Consensus 277 RE~kvL~lLeQIr--------aYC~~~~~~lqar~~~---~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIa 345 (2195)
T KOG2122|consen 277 REKKVLHLLEQIR--------AYCETCWTWLQARGPA---IAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIA 345 (2195)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHhcCCC---CCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHH
Confidence 3444444443322 1222111111111110 0122233444 67788899999999999999999999999
Q ss_pred HHhccCchhHH--HHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcC
Q psy15604 407 DLLHSRNEGVE--ILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINY 484 (986)
Q Consensus 407 ~ll~~~~~~~~--~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~ 484 (986)
+|++-....-. ..-..+.+|.+|..... ...+|-+.. .+. .|+.
T Consensus 346 eLl~vDh~mhgp~tnd~~~~aLRrYa~MAL----------------TNLTFGDv~--------------NKa---~LCs- 391 (2195)
T KOG2122|consen 346 ELLQVDHEMHGPETNDGECNALRRYAGMAL----------------TNLTFGDVA--------------NKA---TLCS- 391 (2195)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHh----------------hcccccccc--------------chh---hhhh-
Confidence 98864221000 00000011111110000 000000000 000 0111
Q ss_pred CchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q psy15604 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL 563 (986)
Q Consensus 485 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~l 563 (986)
..|.+..+|..|.+...++..-.+.+|+||+-..+ +...++.+.|-+..|..+--...........+.+|+||
T Consensus 392 ------~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 392 ------QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred ------hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 25668899999998888888889999999987655 56777776788888887664444556788899999999
Q ss_pred hC-Cccchhhhhc-cCChHHHHHhcCCC----CHhHHHHHHHHHHHhhcC---CCCChHHHHHhCcHHHHHHhhcCCCHh
Q psy15604 564 SH-HRQGLLAIFK-SGGIPALVKLLSSP----VESVLFYAITTLHNLLLH---QEGSKMAVRLAGGLQKMVLLLGRNNVK 634 (986)
Q Consensus 564 s~-~~~~~~~i~~-~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~---~~~~~~~v~~~g~v~~Lv~ll~~~~~~ 634 (986)
+. +.+++..|.. .|++..|+.+|... .-.+.+.+-..|.|...+ .+++|+.+++++.+..|++.|++.+..
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLT 545 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLT 545 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceE
Confidence 98 7789999987 89999999999765 346888888899888765 667899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC
Q psy15604 635 FLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 694 (986)
Q Consensus 635 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~ 694 (986)
+..++|++||||+..+++.+..+.+.|++..|..++.+.+ ..+.+....+|.||-....
T Consensus 546 iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 546 IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999998887 5555677789999876653
No 16
>KOG4500|consensus
Probab=99.65 E-value=7.9e-14 Score=142.39 Aligned_cols=425 Identities=15% Similarity=0.103 Sum_probs=291.9
Q ss_pred CCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhc---CCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChH
Q psy15604 133 EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN---SNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIP 208 (986)
Q Consensus 133 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~---~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~ 208 (986)
.+.+++.....++...+.++--|..+.... +...++++|+. ++|.++...+.++|+|+|.. .++|..+.+.||-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~-I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYC-IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHh-hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 355677777788888888777777666652 23444554442 25789999999999999998 89999999999988
Q ss_pred HHHHhhCC----CC---HhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhc-cC
Q psy15604 209 ALVKLLSS----PV---ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAY-GN 278 (986)
Q Consensus 209 ~Lv~lL~~----~~---~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~aL~~La~-~~ 278 (986)
.++++|.. .+ .+...-+...|.|-..++++.+..+.+.|+++.|...+.- .+............+|.. -.
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88887753 22 2455667788999998899999999999999999988854 333333333333333322 11
Q ss_pred hhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCC-CC-----HHH--HHH
Q psy15604 279 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH-PS-----QRL--VQN 350 (986)
Q Consensus 279 ~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~-~~-----~~~--~~~ 350 (986)
+.......+...+..+++++.+...++..+.+...|...+.++..+-.+.+.|.+..+..++.. +. +.. ...
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 2234455566777889999988777778888889998888888777888999999888888744 11 100 000
Q ss_pred HHH----H------Hhccccccc----ccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccC---c
Q psy15604 351 CLW----T------LRNLSDAGT----KVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSR---N 413 (986)
Q Consensus 351 ~~~----~------L~~ls~~~~----~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~---~ 413 (986)
+.- . +..+...+. ...++.|++...+..++-+++|++++++.+..+++.|.+..|+..+... +
T Consensus 293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd 372 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD 372 (604)
T ss_pred hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 110 0 111122221 2677889999999999999999999999999999999999999998652 2
Q ss_pred hhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcC
Q psy15604 414 EGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATR 493 (986)
Q Consensus 414 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~ 493 (986)
..++..-+.+-|+.++. .|-. .....+..|
T Consensus 373 gnV~~qhA~lsALRnl~----------IPv~----------------------------------------nka~~~~aG 402 (604)
T KOG4500|consen 373 GNVERQHACLSALRNLM----------IPVS----------------------------------------NKAHFAPAG 402 (604)
T ss_pred ccchhHHHHHHHHHhcc----------ccCC----------------------------------------chhhccccc
Confidence 22333222222444221 1110 001112366
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc---cc
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR---QG 569 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~---~~ 569 (986)
....++..++...|.++..-...++-+.-..+ ....+...+..+..|++.-++.+...+.-++-+.+..+..+. +.
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv 482 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDV 482 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhh
Confidence 67788888888888887777777766543333 355566666788888887766544546666666666665543 34
Q ss_pred hhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCC
Q psy15604 570 LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 608 (986)
Q Consensus 570 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 608 (986)
...+.+.|+++..+.++...+-.++..|+.+|..+..-.
T Consensus 483 ~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 483 ILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred HhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 456678999999999999988899999999988877544
No 17
>KOG1222|consensus
Probab=99.62 E-value=3.4e-13 Score=139.42 Aligned_cols=383 Identities=14% Similarity=0.140 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhC
Q psy15604 136 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS 215 (986)
Q Consensus 136 ~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~ 215 (986)
...+.|...|.||+.+-.....+.... ++..|++.|.. .+.+........|..|+...+|+..+.+.|.|+.|+++..
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkn-iV~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKN-IVAMLVKALDR-SNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHh-HHHHHHHHHcc-cchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 456678889999999988888888765 78999999987 4678888899999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHH
Q psy15604 216 SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELV 295 (986)
Q Consensus 216 ~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~ 295 (986)
..+++++...+..+.|++ .+...+..++..|.+|.|..++.+++ ....|...+..++++ ...+..+....+++.+.
T Consensus 356 ~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lm 431 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLS-FDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLM 431 (791)
T ss_pred CCCHHHHHHHHHHhhhcc-ccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccC-cHHHHHHHHHHHHHHHH
Confidence 999999999999999999 66678888888999999999998764 334566778888884 45899999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHH
Q psy15604 296 RIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENI 375 (986)
Q Consensus 296 ~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~ 375 (986)
+.+-......+-.......-+|+....|.+.+.+..++..|++.... +.++
T Consensus 432 k~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k---------------------------~~D~-- 482 (791)
T KOG1222|consen 432 KDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIK---------------------------SRDL-- 482 (791)
T ss_pred HHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhc---------------------------ccch--
Confidence 98877665444444444556788888887888887788888754322 1111
Q ss_pred HHHHHHHHHHHhhChh-hHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCC
Q psy15604 376 QRVAAGLLCELAQDKE-GAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPST 454 (986)
Q Consensus 376 ~~~a~~~L~~l~~~~~-~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (986)
.....+.++++++. .+..+.+
T Consensus 483 --lLmK~vRniSqHeg~tqn~Fid-------------------------------------------------------- 504 (791)
T KOG1222|consen 483 --LLMKVVRNISQHEGATQNMFID-------------------------------------------------------- 504 (791)
T ss_pred --HHHHHHHHhhhccchHHHHHHH--------------------------------------------------------
Confidence 11222333333221 1111110
Q ss_pred CCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhhccccchhhhcc
Q psy15604 455 QFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLN-DEDQVVVSQAAMMVHQLSKKEASRHAIMNS 533 (986)
Q Consensus 455 ~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 533 (986)
- +..|...++ ++++....+|+..++++.-.+.....++.+
T Consensus 505 ----------------------y-----------------vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~ 545 (791)
T KOG1222|consen 505 ----------------------Y-----------------VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQS 545 (791)
T ss_pred ----------------------H-----------------HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhh
Confidence 0 222223232 334556678888899998877777788887
Q ss_pred cCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCC--CCHhHHHHHHHHHHHhhcCCCC
Q psy15604 534 PQMVAALVHAISNSN-DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS--PVESVLFYAITTLHNLLLHQEG 610 (986)
Q Consensus 534 ~~~i~~L~~lL~~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~ 610 (986)
...+|-+-..|+.+- ..+++....-.++.++........+..++.++.++++|+. .++++..+.+.+...+..+...
T Consensus 546 ~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t 625 (791)
T KOG1222|consen 546 ENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT 625 (791)
T ss_pred ccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 899999999887653 3567777777888888877777788889999999999975 4677888889999999988443
Q ss_pred ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 611 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 611 ~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
.+-.+.+...-..|++++...+.+++..|-.+|-.++...
T Consensus 626 r~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 626 RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 4444444455556999999999999999999998887654
No 18
>KOG4199|consensus
Probab=99.62 E-value=2.9e-13 Score=134.13 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=227.4
Q ss_pred ChhHHhhHHHHHHHhhcChh---hHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcHHHHHHHhc--CCC
Q psy15604 16 DLETTKGAVGTLHNLSHHRQ---GLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLN--DED 90 (986)
Q Consensus 16 d~~~~~~a~~~L~~l~~~~~---~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~~l~~ll~--~~~ 90 (986)
|.-.+..|...|..=..... +...+.+++...++.+.|..-....+. .+. + .+..+...++.+|. .++
T Consensus 88 d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~-qpd-l-----~da~g~~vvv~lL~~~~~~ 160 (461)
T KOG4199|consen 88 DECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHK-QPD-L-----FDAEAMAVVLKLLALKVES 160 (461)
T ss_pred HHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC-Ccc-h-----hccccHHHHHHHHhcccch
Confidence 44444456665554332111 222345555555555555421111111 111 2 22357788888884 333
Q ss_pred hhhHHHHHhHHHHHHH-hcCCCcchhHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcccCcchh----------Hh
Q psy15604 91 QDDADLATRAIPELIK-LLNDEDQDDADLATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKKEASRH----------AI 158 (986)
Q Consensus 91 ~~~~~~a~~aL~~l~~-~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~la~~~~~~~----------~i 158 (986)
.+... ..+..+.. +..++-+++.+++.++.+.+...+.. +...+.+....+++-|..+++.|- .|
T Consensus 161 ~dlt~---~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~i 237 (461)
T KOG4199|consen 161 EEVTL---LTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTI 237 (461)
T ss_pred HHHHH---HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHH
Confidence 33322 23444443 44566778888999999999965554 444577777888999988887763 56
Q ss_pred hhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCH-h---HHHHHHHHHHHHhc
Q psy15604 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVE-S---VLFYAITTLHNLLL 234 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~---~~~~a~~~L~~L~~ 234 (986)
+..+ ++..|++.+.-.-|+.+...++.+|..|+.+++.+..+.+.||+..|++++.+.+. . ....++..|..++
T Consensus 238 a~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA- 315 (461)
T KOG4199|consen 238 AKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA- 315 (461)
T ss_pred HHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-
Confidence 6666 46899999998788999999999999999999999999999999999999987432 2 4578889999999
Q ss_pred CCCCchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCCh-HHHHHHHH
Q psy15604 235 HQEGSKMAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDY-EKLLWCTS 311 (986)
Q Consensus 235 ~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~a~ 311 (986)
++++++..|++.|+.+.++.++.. ++|.+...++.+++.|+...|+....+++.|+-...++.|+.+.. ..++.++.
T Consensus 316 G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac 395 (461)
T KOG4199|consen 316 GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNAC 395 (461)
T ss_pred CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHH
Confidence 888999999999999999999854 778999999999999999899999999999999999999998765 55777888
Q ss_pred HHHHHhhhCCCChHHHHHhccHHHHHHHhCC
Q psy15604 312 RVLKVLSVCSSNKPAIVEAGGMQALAMHLGH 342 (986)
Q Consensus 312 ~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~ 342 (986)
-.++|+.....+...+.-..|++.|+.....
T Consensus 396 ~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 396 NMIRNIVVRSAENRTILLANGIEKLIRTAKA 426 (461)
T ss_pred HHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence 9999998655554555555566666654433
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.61 E-value=4.3e-12 Score=144.78 Aligned_cols=385 Identities=17% Similarity=0.202 Sum_probs=269.1
Q ss_pred HHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhC
Q psy15604 82 LIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS 161 (986)
Q Consensus 82 l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~ 161 (986)
+...+++.+.+....+...|..+.. .. .......+..+.|...|.++++.++..++..+.++..++.....+...
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~---~~--~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLS---AL--SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHh---cc--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 5555655555554444444444433 22 112225667788999999999999999999999999887665555555
Q ss_pred CchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchH
Q psy15604 162 PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 241 (986)
Q Consensus 162 ~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 241 (986)
.++++.++.+|.. +|..+...|+.+|.+++..+.+.+.+++.+.++.|..++..+++.++..+..++.+++..+++...
T Consensus 118 ~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5678999999988 799999999999999999988888899999999999999988889999999999999988888889
Q ss_pred HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHH-----HHHHHHHHHHH
Q psy15604 242 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK-----LLWCTSRVLKV 316 (986)
Q Consensus 242 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~-----~~~~a~~aL~~ 316 (986)
.+.+.|.++.++..+++++.-++..+...+..|+. .+.....+.+.|+++.|..++.....++ ..........+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 99999999999999999888899999999999999 6778889999999999999998764433 11122233333
Q ss_pred hhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHH
Q psy15604 317 LSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETI 396 (986)
Q Consensus 317 Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 396 (986)
++.. .. ..+. +..|.++..+. +++.+.++..+..|..+++.++...+.+..+
T Consensus 276 la~~-~~-~~v~--~~~p~~~~~l~------------------------~~~~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 276 LARV-SP-QEVL--ELYPAFLERLF------------------------SMLESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred HHhc-Ch-HHHH--HHHHHHHHHHH------------------------HHhCCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 3332 11 1111 11223322221 2334678888999999999999888888887
Q ss_pred -Hhc-CCcHHHH----HHhccCchhHHHHHHHHHHHH-hhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCC
Q psy15604 397 -EAE-GATAPLT----DLLHSRNEGVEILIQGVHKIF-KIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTE 469 (986)
Q Consensus 397 -~~~-g~l~~Lv----~ll~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 469 (986)
... +.++..+ ....++..+.+..+..+++.+ .... + . ....+.
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~-----------~--------------~-~~~~i~---- 377 (503)
T PF10508_consen 328 LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT-----------D--------------R-QDNDIL---- 377 (503)
T ss_pred HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC-----------C--------------C-chHHHH----
Confidence 433 2334433 333445555555554444221 1000 0 0 000000
Q ss_pred CcHHHHHHHHHHhcCCchhhhhcCCHH-HHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHH
Q psy15604 470 PSQMLKHAVVNLINYQDDADLATRAIP-ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVH 542 (986)
Q Consensus 470 ~~~~~~~a~~~l~~~~~~~~~~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~ 542 (986)
.+........ ..+... .+..+++.+=+++|..+...|..++.++...+.+...+|+++.+++
T Consensus 378 ---~~~~~w~~~~--------~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 378 ---SITESWYESL--------SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred ---HHHHHHHHHh--------cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 0011111111 122333 7778888888999999999999999999888889988888777655
No 20
>KOG4199|consensus
Probab=99.60 E-value=5.7e-13 Score=132.08 Aligned_cols=282 Identities=16% Similarity=0.179 Sum_probs=218.4
Q ss_pred chhHHHhCCCHHHHHHHHcc--CCHHHHHHHHHHHHHhc-ccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15604 113 QDDADLATRAIPELIKLLND--EDQVVVSQAAMMVHQLS-KKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 189 (986)
Q Consensus 113 ~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~la-~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~ 189 (986)
....+.+..+...++++|.. ++.++......++..-+ .++.+|+.+++.+ +.+.+...|.......+.+.+.++++
T Consensus 137 ~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~-il~Li~~~l~~~gk~~~VRel~~a~r 215 (461)
T KOG4199|consen 137 KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK-ILELILQVLNREGKTRTVRELYDAIR 215 (461)
T ss_pred CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-HHHHHHHHHcccCccHHHHHHHHHHH
Confidence 34567788889999998864 46778888888888877 5678999999986 55777766764333356667788999
Q ss_pred hhccCccch----------HHHHhcCChHHHHHhhCCC-CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc
Q psy15604 190 NLSHHRQGL----------LAIFKSGGIPALVKLLSSP-VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 258 (986)
Q Consensus 190 ~ls~~~~~~----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 258 (986)
.|..+++.+ ..|++.|+...|++.++.. +|++....+.+|..++.. .+..+.|.+.||+..|++++.+
T Consensus 216 ~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d 294 (461)
T KOG4199|consen 216 ALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDD 294 (461)
T ss_pred HhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhh
Confidence 998876543 5678889999999999765 789999999999999954 5688999999999999999987
Q ss_pred CC-HHHH---HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCC-hHHHHHHHHHHHHHhh-hCCCChHHHHHhcc
Q psy15604 259 NN-VKFL---AIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD-YEKLLWCTSRVLKVLS-VCSSNKPAIVEAGG 332 (986)
Q Consensus 259 ~~-~~~~---~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~g~ 332 (986)
.+ ...+ ..++..|..|+- +..++..+++.||.+.++.++-.+. ++.+...+..++..|+ ..+++...+++.|+
T Consensus 295 ~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~ 373 (461)
T KOG4199|consen 295 SNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA 373 (461)
T ss_pred hchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch
Confidence 44 3333 445666666665 5569999999999999999887653 4556666777777777 46677788999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhC-hhhHHHHHhcCCcHHHHHHhcc
Q psy15604 333 MQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQD-KEGAETIEAEGATAPLTDLLHS 411 (986)
Q Consensus 333 l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~l~~Lv~ll~~ 411 (986)
-...++.|+.. +....+|+++|..+.|+... .+++..+... |++.|+...+.
T Consensus 374 a~~avqAmkah--------------------------P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~ 426 (461)
T KOG4199|consen 374 ADLAVQAMKAH--------------------------PVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKA 426 (461)
T ss_pred HHHHHHHHHhC--------------------------cHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHh
Confidence 99999988652 34457899999999999854 4666666554 78889999988
Q ss_pred CchhHHHHHHHHH
Q psy15604 412 RNEGVEILIQGVH 424 (986)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (986)
.++..+..+.+++
T Consensus 427 ~h~tce~~akaAL 439 (461)
T KOG4199|consen 427 NHETCEAAAKAAL 439 (461)
T ss_pred cCccHHHHHHHHH
Confidence 8888777666555
No 21
>KOG1293|consensus
Probab=99.57 E-value=3.1e-12 Score=138.64 Aligned_cols=497 Identities=15% Similarity=0.098 Sum_probs=315.0
Q ss_pred hhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCC--HHHHHHHHHHHHHHhccChhhHHHHHhCCC
Q psy15604 213 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN--VKFLAIVTDCLQILAYGNQESKLIILASQG 290 (986)
Q Consensus 213 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~a~~aL~~La~~~~~~~~~~~~~g~ 290 (986)
-+...+|+....+..-..|++.++++.+..+.+.|+++.++.++..++ +......+..+.+++++.+.....+.+.+.
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ 96 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE 96 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence 345567788888889999999999888888899999999999997643 566666677888888888888899999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHH---HHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccccccc
Q psy15604 291 PVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPA---IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSL 367 (986)
Q Consensus 291 v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~---i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~l 367 (986)
.+.|++++..++...+++.+.+.+..+-.....++. ......++.+..++..
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~------------------------- 151 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI------------------------- 151 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh-------------------------
Confidence 999999999988666888888998888654433222 2233334444333321
Q ss_pred ccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhh
Q psy15604 368 LFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEE 447 (986)
Q Consensus 368 l~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 447 (986)
+.......-+....+++..++.+..+..+|+.+.+.-++..-....+.++..+. .+-+ ..++.+
T Consensus 152 ---~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~--sr~~-------~iL~Nn---- 215 (678)
T KOG1293|consen 152 ---ELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCL--SRGD-------RILRNN---- 215 (678)
T ss_pred ---hhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHh--hccc-------eeeecC----
Confidence 334455666666777787789999999999999988887765555554433322 1000 000000
Q ss_pred ccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHH--HHHHHhcCCCHHHHHHHHHHHHHhhhccc
Q psy15604 448 GIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIP--ELIKLLNDEDQVVVSQAAMMVHQLSKKEA 525 (986)
Q Consensus 448 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 525 (986)
.......+..+. ..+..+ .+.+++++++...+..++.++.++.+...
T Consensus 216 -----------------------~~~sm~~l~~L~--------d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~ 264 (678)
T KOG1293|consen 216 -----------------------PLGSMFLLGLLK--------DKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSF 264 (678)
T ss_pred -----------------------chhHHHHHHHHh--------ccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccc
Confidence 000011111111 123333 45668888888888888888888755542
Q ss_pred cc-----hhhhcccCcHHHHH--HhhcCCCCHHH--HHHHHHHHHHhhC-CccchhhhhccCChHHHHHhc------CCC
Q psy15604 526 SR-----HAIMNSPQMVAALV--HAISNSNDLET--TKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLL------SSP 589 (986)
Q Consensus 526 ~~-----~~l~~~~~~i~~L~--~lL~~~~~~~~--~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL------~~~ 589 (986)
+. ..+....| -..++ ..+..-.+|-+ ...++...+-++. -........+...++..++++ ...
T Consensus 265 ~~d~l~~~~~~~dmg-d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~ 343 (678)
T KOG1293|consen 265 NYDPLPWWFIFFDMG-DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAAS 343 (678)
T ss_pred cccccccceeeccCc-hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhc
Confidence 21 11111111 00111 11111111111 1111222222221 112222233344455555554 233
Q ss_pred CHhHHHHHHH---HHHHhhcCCC-CChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHH
Q psy15604 590 VESVLFYAIT---TLHNLLLHQE-GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVE 665 (986)
Q Consensus 590 ~~~v~~~a~~---aL~nl~~~~~-~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 665 (986)
.++.+.-++. .+...+...+ ..++.+.+.-....+..+....+..+.+.+|-++.++++....-+..+-+.++..+
T Consensus 344 ~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~p 423 (678)
T KOG1293|consen 344 DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQP 423 (678)
T ss_pred chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHH
Confidence 4444433332 2233333322 24555554444445555555567888999999999998854333333455678899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhcC-CCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc---cccchh
Q psy15604 666 LVRIMRSYDYEKLLWCTSRVLKVLSVC-SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT---KVDGLE 741 (986)
Q Consensus 666 L~~ll~~~~~~~~~~~~~~~L~~Ls~~-~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~---~~~~~~ 741 (986)
|++++..++ .-+...+.++++|+... ++.+..+++.|+++.+..++.++++.++..++|+|||++.... +.....
T Consensus 424 lvqll~dp~-~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ 502 (678)
T KOG1293|consen 424 LVQLLMDPE-IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA 502 (678)
T ss_pred HHHHhhCcc-hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999998777 56778899999999766 5567899999999999999999999999999999999993332 221112
Q ss_pred -chHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 742 -SLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 742 -~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
=.-..+..+.+++++.+++.+...+.|.+.+.++-|..+.+.
T Consensus 503 ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 503 KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 223455677889999999999999999999999988888775
No 22
>KOG1222|consensus
Probab=99.52 E-value=6.4e-12 Score=130.12 Aligned_cols=385 Identities=14% Similarity=0.137 Sum_probs=281.2
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHh
Q psy15604 177 DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL 256 (986)
Q Consensus 177 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll 256 (986)
.+...+.|.-.|.||+.+.....++...+.|..|+..|...+.++...+...|..|+.. .+++..+.+.|.+..|++++
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhc
Confidence 34566788889999999988888999999999999999999999999999999999955 46888888899999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHH
Q psy15604 257 GRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQAL 336 (986)
Q Consensus 257 ~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L 336 (986)
...+++++......+.+|+++ ...+..++..|.+|.+..++.+.+.. .-|...|+.+|..+..+..+....+++.+
T Consensus 355 p~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci~~l 430 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCIKLL 430 (791)
T ss_pred CCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHHHHH
Confidence 999999999999999999995 45899999999999999999887653 33567788888877777778888999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhH
Q psy15604 337 AMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416 (986)
Q Consensus 337 ~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~ 416 (986)
+..+.++. +.++-......-.|++-++.+.+.+++..++..|....
T Consensus 431 mk~v~~~~---------------------------~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra------- 476 (791)
T KOG1222|consen 431 MKDVLSGT---------------------------GSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERA------- 476 (791)
T ss_pred HHHHHhcC---------------------------CceecHHHHHHHHHHHhccccceEEecCcchHHHHHHH-------
Confidence 87664321 11111111222235666666666665555554444321
Q ss_pred HHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHH
Q psy15604 417 EILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIP 496 (986)
Q Consensus 417 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~ 496 (986)
T Consensus 477 -------------------------------------------------------------------------------- 476 (791)
T KOG1222|consen 477 -------------------------------------------------------------------------------- 476 (791)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhh-hhc
Q psy15604 497 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA-IFK 575 (986)
Q Consensus 497 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~-i~~ 575 (986)
++..|+- -+..++++++++...+..+- +.+..|...++.+++.....++.++|+||.-.+-.... +..
T Consensus 477 -----~k~~D~l----LmK~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~ 545 (791)
T KOG1222|consen 477 -----IKSRDLL----LMKVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQS 545 (791)
T ss_pred -----hcccchH----HHHHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhh
Confidence 1111111 12356677777765443332 45677777777777788889999999999985544444 445
Q ss_pred cCChHHHHHhcCCC--CHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC--CCHhHHHHHHHHHHHHhcCCc
Q psy15604 576 SGGIPALVKLLSSP--VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~--~~~~v~~~a~~aL~~L~~~~~ 651 (986)
.+.+|.+-..|+.+ .++.+-..+-+++.++.+.. +...+...|.++.++++|+. .+.++.-....++..+.+. .
T Consensus 546 ~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~-cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e 623 (791)
T KOG1222|consen 546 ENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD-CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-E 623 (791)
T ss_pred ccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH-HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-H
Confidence 88899988888654 34577788888888885544 66666679999999999986 4667777777777777775 3
Q ss_pred ccHHHH-HhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC
Q psy15604 652 ESKLII-LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 694 (986)
Q Consensus 652 ~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~ 694 (986)
..+..+ .+......++.++.+.+ +++++-+-.+|-.++.++.
T Consensus 624 ~tr~~miket~~~AylIDLMHDkN-~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 624 LTRRLMIKETALGAYLIDLMHDKN-AEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHhhccchHHHHHHHhccc-HHHHHHHHHHHHHHHHhhH
Confidence 444444 45556778899998887 6677666666666665543
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=2.7e-10 Score=130.20 Aligned_cols=379 Identities=16% Similarity=0.156 Sum_probs=266.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccc-hHHHHhc
Q psy15604 126 LIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG-LLAIFKS 204 (986)
Q Consensus 126 L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~ 204 (986)
+...|.+.+++....++.+|..+-........+. .+.+.|...|.. +++.+|+.++..|.++..+++. ...+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~---~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLP---QYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHH---HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 7777888888888888888888776554444422 245777888887 7899999999999999888554 5666778
Q ss_pred CChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHH
Q psy15604 205 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLI 284 (986)
Q Consensus 205 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~ 284 (986)
+.++.++.++.+++.++...|+.+|.+++.. +..-..+...+.++.|..++...++.++..+..++..++..+++....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999954 445566777888999999998877788888889999999989999999
Q ss_pred HHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccc
Q psy15604 285 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK 364 (986)
Q Consensus 285 ~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~ 364 (986)
+.+.|.++.++..+.+.+ .-++..++..|..|+..+++...+.+.|+++.|..++.+...+..
T Consensus 198 ~~~sgll~~ll~eL~~dD-iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~---------------- 260 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDD-ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPR---------------- 260 (503)
T ss_pred HHhccHHHHHHHHhcCcc-HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCc----------------
Confidence 999999999999999844 446778888888888877777778888888888777754211000
Q ss_pred cccccCCchHHH-HHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccccccccccc
Q psy15604 365 VSLLFNEIENIQ-RVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPE 443 (986)
Q Consensus 365 i~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 443 (986)
...+. -......++++. . .|.
T Consensus 261 -------~~~~~l~g~~~f~g~la~----------------------~-----------------------------~~~ 282 (503)
T PF10508_consen 261 -------LSSLLLPGRMKFFGNLAR----------------------V-----------------------------SPQ 282 (503)
T ss_pred -------ccchhhhhHHHHHHHHHh----------------------c-----------------------------ChH
Confidence 00000 000011111110 0 000
Q ss_pred chhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhc
Q psy15604 444 TLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK 523 (986)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 523 (986)
.+.... ...+..+..++.+.|+..+..|..+++.+++.
T Consensus 283 -----------------------------~v~~~~-------------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 283 -----------------------------EVLELY-------------PAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred -----------------------------HHHHHH-------------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 000000 00133445667788999999999999999888
Q ss_pred cccchhh-hcccCcHHHHHHhh---cCCCCHHHHHHHHHHHHHhhC--Cccc-------hhhhh---ccCChH-HHHHhc
Q psy15604 524 EASRHAI-MNSPQMVAALVHAI---SNSNDLETTKGAVGTLHNLSH--HRQG-------LLAIF---KSGGIP-ALVKLL 586 (986)
Q Consensus 524 ~~~~~~l-~~~~~~i~~L~~lL---~~~~~~~~~~~a~~~L~~ls~--~~~~-------~~~i~---~~~~i~-~Lv~lL 586 (986)
......+ ...++.++..+... ......+++..+..+|.++-. .+.. ....+ ..+... .+..++
T Consensus 321 ~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~ 400 (503)
T PF10508_consen 321 VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL 400 (503)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 7776666 44334444433333 122367899999999999944 2211 11222 244444 788899
Q ss_pred CCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHH
Q psy15604 587 SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL 626 (986)
Q Consensus 587 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ 626 (986)
+.|-++++..+...|..++.+.-..+......|.+..+++
T Consensus 401 ~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 401 KQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred cCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 9999999999999999999776656666655665555544
No 24
>KOG1293|consensus
Probab=99.43 E-value=8.5e-10 Score=120.07 Aligned_cols=551 Identities=16% Similarity=0.104 Sum_probs=311.3
Q ss_pred CCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCC--HhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHH
Q psy15604 176 NDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPV--ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKM 252 (986)
Q Consensus 176 ~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L 252 (986)
.|++....|..-..|+... ++++..+.+.|+++.+..+++..+ ++.+...+..+..+..+.++....+.+.+.++.|
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L 100 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL 100 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence 4677777777788888776 788888999999999999997654 5566667788888888888888999999999999
Q ss_pred HHHhccCC-HHHHHHHHHHHHHHhccCh--hhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHH
Q psy15604 253 VLLLGRNN-VKFLAIVTDCLQILAYGNQ--ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVE 329 (986)
Q Consensus 253 ~~ll~~~~-~~~~~~a~~aL~~La~~~~--~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 329 (986)
++++.+.+ ..+.....+++.++-..++ +..........++.+..++.......... -.....+++.-+.++..+..
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l-~~~~~a~~s~~~~hq~Il~N 179 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRL-DVSRAAHLSSTKDHQLILCN 179 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhh-hhhhhccccccchhhheecc
Confidence 99998877 7788888999998865332 12222222233344443333122111122 22233444544555666778
Q ss_pred hccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhCh-----hhHHHHHhcCCcH-
Q psy15604 330 AGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDK-----EGAETIEAEGATA- 403 (986)
Q Consensus 330 ~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~-----~~~~~l~~~g~l~- 403 (986)
.|+.+.+.-++...+...+.+|+..++.- + ++..++ .....+.+.|..+
T Consensus 180 a~i~ekI~~l~~~~s~~~RlaaL~~~sr~------~-------------------~iL~Nn~~~sm~~l~~L~d~~v~~r 234 (678)
T KOG1293|consen 180 AGILEKINILLMYLSSKLRLAALLCLSRG------D-------------------RILRNNPLGSMFLLGLLKDKGVNIR 234 (678)
T ss_pred ccchhhHHHHHHhhhHHHHHHHHHHhhcc------c-------------------eeeecCchhHHHHHHHHhccccchh
Confidence 88888887766665555555555555410 0 222221 2233344555555
Q ss_pred -HHHHHhccCchhHHHHHHHHH-HHHhhc-cccccccccccccchhhccCCCCCCCCCchhHHHH-----hcCCCcHHHH
Q psy15604 404 -PLTDLLHSRNEGVEILIQGVH-KIFKIH-KINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQ-----RLTEPSQMLK 475 (986)
Q Consensus 404 -~Lv~ll~~~~~~~~~~~~~~~-al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~l~~~~~~~~ 475 (986)
.+.++++++....+.....++ -+++-. +-.+...... +++-+.+..++ ++..|.....
T Consensus 235 ~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~--------------~~dmgd~~i~q~~~i~l~~~P~~s~l 300 (678)
T KOG1293|consen 235 CVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFI--------------FFDMGDSLIVQYNCIVLMNDPGLSTL 300 (678)
T ss_pred hhhhhhhhCCCccHHHHHHHHHHHHHhcccccccccccee--------------eccCchHHHHHHhhheeecCCceeeh
Confidence 455667766655554433333 222111 0011011111 11111111111 1111100000
Q ss_pred --HHHHH--Hh---cCCchhhhhcCCHHHHHHHhc------CCCHHHHHHHHHHHHHh---hhccc--cchhhhcccCcH
Q psy15604 476 --HAVVN--LI---NYQDDADLATRAIPELIKLLN------DEDQVVVSQAAMMVHQL---SKKEA--SRHAIMNSPQMV 537 (986)
Q Consensus 476 --~a~~~--l~---~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l---~~~~~--~~~~l~~~~~~i 537 (986)
.+... ++ .--.....+...++.+++++. ..+++.+.-++.-..-+ ..... .+..+.+. ...
T Consensus 301 ~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~-~t~ 379 (678)
T KOG1293|consen 301 DHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILET-TTE 379 (678)
T ss_pred hhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHH-HHH
Confidence 00000 00 000111122333333333332 33444443332222111 11111 12222221 111
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhCCc-cchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHH
Q psy15604 538 AALVHAISNSNDLETTKGAVGTLHNLSHHR-QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 616 (986)
Q Consensus 538 ~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~ 616 (986)
..+.. +....+.+....++-++.+++.+- .-+..+-+..++.++++++..|+..++..++.+|.|+.....+.+....
T Consensus 380 ~~l~~-~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl 458 (678)
T KOG1293|consen 380 SHLMC-LPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL 458 (678)
T ss_pred HHHcc-ccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 11111 223346677777777777776632 2233355678899999999999999999999999999999999999999
Q ss_pred HhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcc-cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCC
Q psy15604 617 LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE-SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 695 (986)
Q Consensus 617 ~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~ 695 (986)
..|++..+...+.+.++.++..+.|+|+++.++..+ -+......-+...++.+..+++ ..+++.+..+|+||.++...
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d-~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPD-WAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCC-HHHHHHHHHHHHHhhcCcHH
Confidence 999999999999999999999999999999997644 3344444444555666666677 66778999999999776433
Q ss_pred c-hhHHhcC--cHHHHHHhh--CCCCHHHHHHHHHHHHHhh-cccccccchhchHHHHHHHh--------ccCChhhHHH
Q psy15604 696 K-PAIVEAG--GMQALAMHL--GHPSQRLVQNCLWTLRNLS-DAGTKVDGLESLLQSLVQLL--------ASQDINVITC 761 (986)
Q Consensus 696 ~-~~l~~~g--~~~~L~~ll--~~~~~~v~~~al~~L~nLs-~~~~~~~~~~~~l~~L~~ll--------~~~~~~i~~~ 761 (986)
. ..+++.- .+......+ ...+|-....-...++-++ ....+...+.+..+.++..- .+...+....
T Consensus 538 svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~ 617 (678)
T KOG1293|consen 538 SVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLN 617 (678)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 2 4444421 122222222 2234444444333333333 11223334455555554331 2335577888
Q ss_pred HHHHHhhh
Q psy15604 762 AAGVTVCQ 769 (986)
Q Consensus 762 a~~~L~ni 769 (986)
+.|.+.|.
T Consensus 618 ~~~~iinl 625 (678)
T KOG1293|consen 618 IMSEIINL 625 (678)
T ss_pred HHHHHHhc
Confidence 88888764
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.43 E-value=1e-11 Score=126.07 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=179.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHH
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 614 (986)
+-++.|+.+|+.+++|.+++.+..++.+.+..+.++..+.+.|+++.+..+|.++++.++..|+++|.|++...+ .+..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-NQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-hHHH
Confidence 668999999998889999999999999999999999999999999999999999999999999999999996655 4555
Q ss_pred HHHhCcHHHHHHhhcCC--CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q psy15604 615 VRLAGGLQKMVLLLGRN--NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC 692 (986)
Q Consensus 615 v~~~g~v~~Lv~ll~~~--~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~ 692 (986)
+. ..++.+++.+.+. +..++..+.++|.||+..+ +....+. +.++.++.++..++ +..+..+.++|.|||.+
T Consensus 91 Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~-~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 91 IK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGS-EKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCC-hHHHHHHHHHHHHhccC
Confidence 54 2477777765543 6789999999999998753 3433343 36888999999887 67888999999999999
Q ss_pred CCCchhHHhcCcHHHHHHhhCCC-CHHHHHHHHHHHHHhhccccc------------------ccchhchHHHHHHHhcc
Q psy15604 693 SSNKPAIVEAGGMQALAMHLGHP-SQRLVQNCLWTLRNLSDAGTK------------------VDGLESLLQSLVQLLAS 753 (986)
Q Consensus 693 ~~~~~~l~~~g~~~~L~~ll~~~-~~~v~~~al~~L~nLs~~~~~------------------~~~~~~~l~~L~~ll~~ 753 (986)
+.....++.++++..++.++... +..+...++....||++.-.+ ......+.+.|..+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 99999999999999999999875 678899999999999832211 01112466677777777
Q ss_pred CChhhHHH
Q psy15604 754 QDINVITC 761 (986)
Q Consensus 754 ~~~~i~~~ 761 (986)
+|++++..
T Consensus 245 ~d~ev~~~ 252 (254)
T PF04826_consen 245 PDPEVKEQ 252 (254)
T ss_pred CCHHHhhh
Confidence 78887753
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=2e-10 Score=135.24 Aligned_cols=504 Identities=19% Similarity=0.137 Sum_probs=327.7
Q ss_pred HHHHHHccC--CHHHHHHHH-HHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHH
Q psy15604 125 ELIKLLNDE--DQVVVSQAA-MMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAI 201 (986)
Q Consensus 125 ~L~~ll~~~--~~~~~~~a~-~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 201 (986)
.+.+.+.+. +..-+..+. +++.......+.. .+ +..+++++.+ +|...++.+..++..+...++..-.+
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~-~~~vi~l~~s-~~~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FL-FMEVIKLISS-KDLELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------ST-HHHHHCTCSS-SSHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hH-HHHHHHHhCC-CCHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555555 554455443 3333333332222 23 4778887774 79999999999888887764432222
Q ss_pred HhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh
Q psy15604 202 FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQES 281 (986)
Q Consensus 202 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~ 281 (986)
++..+..=|.++++.++..|+++|++++ . ++.. .-.++.+.+++.++++.++..|+.++..+...+++.
T Consensus 80 ----~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~-~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 80 ----IINSLQKDLNSPNPYIRGLALRTLSNIR-T-PEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp ----HHHHHHHHHCSSSHHHHHHHHHHHHHH--S-HHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred ----HHHHHHHhhcCCCHHHHHHHHhhhhhhc-c-cchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence 5667888889999999999999999998 2 2222 234788889999999999999999999998766654
Q ss_pred HHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHH--HHhccHHHHHHHhCCCCHHHHHHHHHHHhccc
Q psy15604 282 KLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI--VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 359 (986)
Q Consensus 282 ~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i--~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls 359 (986)
-. .. .++.+.+++...++. +..+|..++..+ ..+.+.. .-......|.+++.
T Consensus 149 ~~---~~-~~~~l~~lL~d~~~~-V~~~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l~------------------ 202 (526)
T PF01602_consen 149 VE---DE-LIPKLKQLLSDKDPS-VVSAALSLLSEI---KCNDDSYKSLIPKLIRILCQLLS------------------ 202 (526)
T ss_dssp HH---GG-HHHHHHHHTTHSSHH-HHHHHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHHT------------------
T ss_pred HH---HH-HHHHHhhhccCCcch-hHHHHHHHHHHH---ccCcchhhhhHHHHHHHhhhccc------------------
Confidence 32 22 478899999877755 777787888777 1111111 11122333333333
Q ss_pred ccccccccccCCchHHHHHHHHHHHHHhhCh-hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccc
Q psy15604 360 DAGTKVSLLFNEIENIQRVAAGLLCELAQDK-EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGC 438 (986)
Q Consensus 360 ~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 438 (986)
..+|..+..+.+.|..++... ..... ...++.+..++++.+..+...+..+. ..
T Consensus 203 ----------~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i--~~---------- 257 (526)
T PF01602_consen 203 ----------DPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLI--IK---------- 257 (526)
T ss_dssp ----------CCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------
T ss_pred ----------ccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHH--HH----------
Confidence 455566666666666665432 22211 34567777777766665544333322 10
Q ss_pred cccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15604 439 LMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVH 518 (986)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 518 (986)
+ ..........++.+.+++.++++.++..++..|.
T Consensus 258 -l--------------------------------------------~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 258 -L--------------------------------------------SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp -H--------------------------------------------SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred -h--------------------------------------------hcchHHHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 0 0000011334788999999999999999999999
Q ss_pred HhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhc-CCCCHhHHHHH
Q psy15604 519 QLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLL-SSPVESVLFYA 597 (986)
Q Consensus 519 ~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~v~~~a 597 (986)
.++.... ..+. . ....+..+..++++.++..++.+|.+++.. ++... .++.|...+ ..++++++..+
T Consensus 293 ~l~~~~~--~~v~-~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~-~n~~~-----Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 293 QLAQSNP--PAVF-N---QSLILFFLLYDDDPSIRKKALDLLYKLANE-SNVKE-----ILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HHCCHCH--HHHG-T---HHHHHHHHHCSSSHHHHHHHHHHHHHH--H-HHHHH-----HHHHHHHHHHHC--HHHHHHH
T ss_pred Hhhcccc--hhhh-h---hhhhhheecCCCChhHHHHHHHHHhhcccc-cchhh-----HHHHHHHHHHhccchhhhhhH
Confidence 9977762 1111 1 222334555566899999999999999863 23333 467888888 45588899999
Q ss_pred HHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhH
Q psy15604 598 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 677 (986)
Q Consensus 598 ~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 677 (986)
+..++.++...+...... +..+++++...++.+...+...+.++...+++.+... +..+++.+.+...+.
T Consensus 361 i~~I~~la~~~~~~~~~~-----v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~-----l~~L~~~l~~~~~~~ 430 (526)
T PF01602_consen 361 IKAIGDLAEKFPPDAEWY-----VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKI-----LKKLIELLEDISSPE 430 (526)
T ss_dssp HHHHHHHHHHHGSSHHHH-----HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHH-----HHHHHHHHTSSSSHH
T ss_pred HHHHHHHHhccCchHHHH-----HHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHH-----HHHHHHHHHHhhHHH
Confidence 999999997665443333 5788899988877788888888888887665554433 667888888766577
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhc--cCC
Q psy15604 678 LLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLA--SQD 755 (986)
Q Consensus 678 ~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~--~~~ 755 (986)
....++|+++.-+....+.. .-...++.+...+...++.++...+.++..+............+++.+..+.. +.|
T Consensus 431 ~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~ 508 (526)
T PF01602_consen 431 ALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSD 508 (526)
T ss_dssp HHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SS
T ss_pred HHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCC
Confidence 78888888888766543311 11124555666666677889989998888887433322222366777777777 789
Q ss_pred hhhHHHHHHHHh
Q psy15604 756 INVITCAAGVTV 767 (986)
Q Consensus 756 ~~i~~~a~~~L~ 767 (986)
+++|..|+..+.
T Consensus 509 ~evr~Ra~~y~~ 520 (526)
T PF01602_consen 509 PEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 27
>KOG2171|consensus
Probab=99.41 E-value=1.7e-09 Score=125.46 Aligned_cols=539 Identities=17% Similarity=0.123 Sum_probs=296.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC------cc
Q psy15604 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH------RQ 196 (986)
Q Consensus 123 i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~------~~ 196 (986)
+..|+.-|.++|.+++..|-+++.++...+. ..+.|.+++..+.|+++|..|+-.+.++... .+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 4556777778888899999999998887653 3688899999989999999999988888654 23
Q ss_pred chHHHHhcCChHHHHHhh-CCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q psy15604 197 GLLAIFKSGGIPALVKLL-SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La 275 (986)
.+..+.. .|+... +.+.+.++..-+.++..+++..-+. .=-+.++.|.+..++.++..+..+...|.++.
T Consensus 76 ~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 76 VQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhh
Confidence 3333322 333333 4567789999999999999554221 00123445555557789999999999999986
Q ss_pred ccCh-hhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCC-CChHHHHH-hccHHHHHHHh----CCCCHHHH
Q psy15604 276 YGNQ-ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS-SNKPAIVE-AGGMQALAMHL----GHPSQRLV 348 (986)
Q Consensus 276 ~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~-~g~l~~L~~ll----~~~~~~~~ 348 (986)
..-. ..+..+ ....+.+.+.+..++.. ++..+++++...+..- .++..... ...+|.++..+ ..++.+..
T Consensus 147 ~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a 223 (1075)
T KOG2171|consen 147 ETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAA 223 (1075)
T ss_pred hhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHH
Confidence 5111 011100 01234455555556656 9999999999888544 34333222 23345454444 44444444
Q ss_pred HHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHh
Q psy15604 349 QNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFK 428 (986)
Q Consensus 349 ~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~ 428 (986)
..++.+|..+....+. +++..-..+...+. .++.|++.-.. ...-++..|+.+.+......+.... .
T Consensus 224 ~~~l~~l~El~e~~pk--~l~~~l~~ii~~~l----~Ia~n~~l~~~-~R~~ALe~ivs~~e~Ap~~~k~~~~-~----- 290 (1075)
T KOG2171|consen 224 KSALEALIELLESEPK--LLRPHLSQIIQFSL----EIAKNKELENS-IRHLALEFLVSLSEYAPAMCKKLAL-L----- 290 (1075)
T ss_pred HHHHHHHHHHHhhchH--HHHHHHHHHHHHHH----HHhhcccccHH-HHHHHHHHHHHHHHhhHHHhhhchh-h-----
Confidence 5555555444322211 00000000111111 11111110000 0011233333333221111110000 0
Q ss_pred hccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHH--HhcCCC
Q psy15604 429 IHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIK--LLNDED 506 (986)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~--ll~~~~ 506 (986)
.++-.+..+.-+ ....+| +...+ -+..++
T Consensus 291 ---------------------------~~~lv~~~l~~m--------------te~~~D--------~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 291 ---------------------------GHTLVPVLLAMM--------------TEEEDD--------DEWSNEDDLDEDD 321 (1075)
T ss_pred ---------------------------hccHHHHHHHhc--------------CCcccc--------hhhcccccccccc
Confidence 000000000000 000000 00000 001111
Q ss_pred -HHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHH
Q psy15604 507 -QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVK 584 (986)
Q Consensus 507 -~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~ 584 (986)
...-..|..++-.++.+=.+..-+ +-+.+.+-.++++. +..-++.+..+|+.++. +.+..... =...++.++.
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVL---PPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLN 396 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhheh---HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHh
Confidence 112234555666665554321111 13345555556554 77788888888888876 22222211 1456778888
Q ss_pred hcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC-CHhHHHHHHHHHHHHhcCCcccHHHHHhCCCh
Q psy15604 585 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQESKLIILASQGP 663 (986)
Q Consensus 585 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 663 (986)
.|+++++.||..|+.+++.++.+-.+.-..-...-.++.|+..+.+. +++++..++.++-|++...+.....-+=.+..
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm 476 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLM 476 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999999999999999999988665444444466777899988875 88999999999999998654443333333556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCC-H---HHHHHHHHHHHHhhcccc--c-
Q psy15604 664 VELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPS-Q---RLVQNCLWTLRNLSDAGT--K- 736 (986)
Q Consensus 664 ~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~-~---~v~~~al~~L~nLs~~~~--~- 736 (986)
.+++..|..++...+++.+..++...+.....+-.=.-.-.++.|...+...+ . .++..+..|+.-+..... +
T Consensus 477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 477 EKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 65666666666688888888888888765443311111346777777776654 3 344444455544442221 1
Q ss_pred ccchhchHHHHHHH
Q psy15604 737 VDGLESLLQSLVQL 750 (986)
Q Consensus 737 ~~~~~~~l~~L~~l 750 (986)
......++..+..+
T Consensus 557 ~~~a~eliqll~~~ 570 (1075)
T KOG2171|consen 557 LPLAEELIQLLLEL 570 (1075)
T ss_pred hHhHHHHHHHHHhh
Confidence 22223555555555
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.38 E-value=3.9e-11 Score=121.92 Aligned_cols=198 Identities=16% Similarity=0.162 Sum_probs=168.8
Q ss_pred HHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q psy15604 116 ADLATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~ 194 (986)
.+.+.+.++.|+.+|+. .|+.+++.+..++++.+..+.+++.|.+.|| ++.+..+|.+ +++.++..|+.+|.|++.+
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Gg-i~lI~~lL~~-p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGG-ISLIGSLLND-PNPSVREKALNALNNLSVN 84 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCC-HHHHHHHcCC-CChHHHHHHHHHHHhcCCC
Confidence 34667788999999995 5899999999999999999999999999987 5999999988 7999999999999999999
Q ss_pred ccchHHHHhcCChHHHHHhhCCC--CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Q psy15604 195 RQGLLAIFKSGGIPALVKLLSSP--VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQ 272 (986)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~ 272 (986)
.+++..+-. .++.+++...+. +.+++..++++|.||+.. .+++..+. +.++.++.+|.+++...+..+..+|.
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999998754 577777765443 678999999999999944 45666664 57999999999999999999999999
Q ss_pred HHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCC
Q psy15604 273 ILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 321 (986)
Q Consensus 273 ~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~ 321 (986)
+|+. ++.....+...+++..++.++..+...+....++..+.++..+-
T Consensus 160 nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 160 NLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred Hhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9999 67777888899999999999999876667777778888886543
No 29
>KOG2171|consensus
Probab=99.38 E-value=8.5e-09 Score=119.84 Aligned_cols=506 Identities=15% Similarity=0.139 Sum_probs=294.7
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHhccc-----
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKK----- 151 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~la~~----- 151 (986)
.+..|+.-+.+++.+++..|.+++..+.. .....+.|..++.. .|+++|..|+..+.++...
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~------------~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l 72 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAK------------TEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRL 72 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhc------------ccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcC
Confidence 56777888888888899999998866554 12277888888875 5899999999999998753
Q ss_pred -CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHH
Q psy15604 152 -EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITT 228 (986)
Q Consensus 152 -~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 228 (986)
.+.+..| -..|+..+..++.+.+|..-+.+++.++++ |+ .+ .+.++.|++..+++++..++.|+.+
T Consensus 73 ~~e~~~si------ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~W--Pell~~L~q~~~S~~~~~rE~al~i 141 (1075)
T KOG2171|consen 73 SAEVQQSI------KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KW--PELLQFLFQSTKSPNPSLRESALLI 141 (1075)
T ss_pred CHHHHHHH------HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---ch--HHHHHHHHHHhcCCCcchhHHHHHH
Confidence 2233333 345566666667889999999999999887 33 22 2366777788899999999999999
Q ss_pred HHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHh-CCCHHHHHHHHhc----CCh
Q psy15604 229 LHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA-SQGPVELVRIMRS----YDY 303 (986)
Q Consensus 229 L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~-~g~v~~L~~ll~~----~~~ 303 (986)
|..+.....+.-.... ....+.+.+.+.+.+..++..++.++..++...+.++..... ...+|.++..+.. ++.
T Consensus 142 l~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 142 LSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD 220 (1075)
T ss_pred HHhhhhhhccccchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch
Confidence 9999854332111000 112333444445555559999999999887644322222222 1344555555543 222
Q ss_pred HHHHHHHHHHHHHhhhCCCChHHHHHh---ccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHH
Q psy15604 304 EKLLWCTSRVLKVLSVCSSNKPAIVEA---GGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAA 380 (986)
Q Consensus 304 ~~~~~~a~~aL~~Ls~~~~~~~~i~~~---g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~ 380 (986)
. ....+..+|..+.... ..+... .+++..+++..+ ..-++.++..|.
T Consensus 221 ~-~a~~~l~~l~El~e~~---pk~l~~~l~~ii~~~l~Ia~n--------------------------~~l~~~~R~~AL 270 (1075)
T KOG2171|consen 221 D-AAKSALEALIELLESE---PKLLRPHLSQIIQFSLEIAKN--------------------------KELENSIRHLAL 270 (1075)
T ss_pred H-HHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHHhhc--------------------------ccccHHHHHHHH
Confidence 2 2233444554444221 111111 112222222221 144677888999
Q ss_pred HHHHHHhhCh-hhHHHHHhc--CCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCC
Q psy15604 381 GLLCELAQDK-EGAETIEAE--GATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFD 457 (986)
Q Consensus 381 ~~L~~l~~~~-~~~~~l~~~--g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (986)
..|.-++... ..++..... -.++.++.++....+..+ | ...+..++
T Consensus 271 e~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e---------w------------~~~d~~de---------- 319 (1075)
T KOG2171|consen 271 EFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE---------W------------SNEDDLDE---------- 319 (1075)
T ss_pred HHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh---------h------------cccccccc----------
Confidence 9998887652 222222111 112222222221111100 0 00000000
Q ss_pred CchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCc
Q psy15604 458 TAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQM 536 (986)
Q Consensus 458 ~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~ 536 (986)
.... .+...-..++-.+.......-+..-..+.+-.++.+++..-|..++.+|..++..... ....+ +.+
T Consensus 320 -d~~~------~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~I 390 (1075)
T KOG2171|consen 320 -DDEE------TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKI 390 (1075)
T ss_pred -cccc------CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHH
Confidence 0000 0000011111111111111111122255666788999999999999999988765542 33333 367
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccchhhhhccCChHHHHHhcCC-CCHhHHHHHHHHHHHhhcCCCCChHH
Q psy15604 537 VAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGSKMA 614 (986)
Q Consensus 537 i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~ 614 (986)
++..+..|++ ++|.+|..|+.+++.++.+ ......-...-.+|.|+..+.+ .++.++..|+.++-|+....+...-.
T Consensus 391 l~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 391 LPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 7777777765 4899999999999999883 2333333345566788888866 46689999999999999776543322
Q ss_pred HHHhCcHH-HHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHH
Q psy15604 615 VRLAGGLQ-KMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLL 679 (986)
Q Consensus 615 v~~~g~v~-~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 679 (986)
-.--+.+. .+..++.++++.++..+..++...+....+.-....+ ...+.|..+|.+.+.++.+
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d-~~Mp~L~~~L~n~~~~d~r 534 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD-RLMPLLKNFLQNADDKDLR 534 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH-HHHHHHHHHHhCCCchhhH
Confidence 22234455 3344556778999999999999988743222222233 4577788888877644433
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=2.2e-10 Score=134.97 Aligned_cols=468 Identities=16% Similarity=0.166 Sum_probs=307.5
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
+...+++++.+.+...++.+--++..+.. .+ ....++ ++..+.+-|.++++.++..|++++++++..+
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~---~~-~~~~~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----- 110 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLH---ED-PELLIL---IINSLQKDLNSPNPYIRGLALRTLSNIRTPE----- 110 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTT---TS-HHHHHH---HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhh---cc-hhHHHH---HHHHHHHhhcCCCHHHHHHHHhhhhhhcccc-----
Confidence 67788888888888887765444333322 22 111222 6677888899999999999999999998432
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
+.+. +++.+.+++.+ +++.+|..|+.++.++... |+... .. .++.+.++|.++++.++..|+.++..+ ..+
T Consensus 111 ~~~~--l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 111 MAEP--LIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HHHH--HHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT
T ss_pred hhhH--HHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccC
Confidence 2222 46778888887 6899999999999999765 43222 22 588999999999999999999999999 222
Q ss_pred CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKV 316 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~ 316 (986)
+.....+. ...+..|.+++...++-.+......+..++...+..... ...++.+..++++.++. +...+..++..
T Consensus 183 ~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~-V~~e~~~~i~~ 257 (526)
T PF01602_consen 183 DDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPS-VVYEAIRLIIK 257 (526)
T ss_dssp HHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccH-HHHHHHHHHHH
Confidence 21111111 234555566667788889988888888887755544411 34568888888865544 66777777766
Q ss_pred hhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccc-cc-------ccccc-CCchHHHHHHHHHHHHHh
Q psy15604 317 LSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG-TK-------VSLLF-NEIENIQRVAAGLLCELA 387 (986)
Q Consensus 317 Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~-~~-------i~ll~-~~~~~~~~~a~~~L~~l~ 387 (986)
+..... .-..+++.|..++.++++.++..++..|..+.... +. +..+. ++++.++..+..+|..++
T Consensus 258 l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 258 LSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred hhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 553221 55667899999999999999999999998886655 21 33333 788899999999999998
Q ss_pred hChhhHHHHHhcCCcHHHHHHhccC-chhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHh
Q psy15604 388 QDKEGAETIEAEGATAPLTDLLHSR-NEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQR 466 (986)
Q Consensus 388 ~~~~~~~~l~~~g~l~~Lv~ll~~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 466 (986)
....... .++.|...+.+. +...+..+...+ ..++. +
T Consensus 333 ~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I--~~la~----------------------------------~ 370 (526)
T PF01602_consen 333 NESNVKE------ILDELLKYLSELSDPDFRRELIKAI--GDLAE----------------------------------K 370 (526)
T ss_dssp -HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHH--HHHHH----------------------------------H
T ss_pred cccchhh------HHHHHHHHHHhccchhhhhhHHHHH--HHHHh----------------------------------c
Confidence 6443333 356666666332 333433222222 11110 0
Q ss_pred cCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcC
Q psy15604 467 LTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN 546 (986)
Q Consensus 467 l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~ 546 (986)
.... ..-.++.+++++...+..+...+...+.++....+..+ ...+..+++.+..
T Consensus 371 ~~~~--------------------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 371 FPPD--------------------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----EKILKKLIELLED 425 (526)
T ss_dssp HGSS--------------------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----HHHHHHHHHHHTS
T ss_pred cCch--------------------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----HHHHHHHHHHHHH
Confidence 0000 01126677777877777777777778887765543221 1347788888877
Q ss_pred CCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHH
Q psy15604 547 SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL 626 (986)
Q Consensus 547 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ 626 (986)
..+++++..++|+++..+...+... .-...+..++......++.++...+.++..+....+..... ....+.+..
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~---~~i~~~~~~ 500 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ---NEILQFLLS 500 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH---HHHHHHHHC
T ss_pred hhHHHHHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH---HHHHHHHHH
Confidence 7789999999999999987322200 11123445555566677889999999999999766532110 022344555
Q ss_pred hhc--CCCHhHHHHHHHHHHHHh
Q psy15604 627 LLG--RNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 627 ll~--~~~~~v~~~a~~aL~~L~ 647 (986)
+.. +.+++++..|...++-|.
T Consensus 501 ~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 501 LATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHc
Confidence 556 679999999998877664
No 31
>KOG1241|consensus
Probab=99.34 E-value=7.4e-08 Score=106.58 Aligned_cols=632 Identities=12% Similarity=0.072 Sum_probs=338.9
Q ss_pred ChhHHHHHHHHhcCCChhHHhhHHHHHHHhhcChh--hHHHHHh---cCCcHHHHHHH-----HhhhcCCCccc------
Q psy15604 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ--GLLAIFK---SGGIPALVKLL-----SKTLVTASSNN------ 64 (986)
Q Consensus 1 ~~~~~~lv~~l~~~~d~~~~~~a~~~L~~l~~~~~--~~~~i~~---~g~i~~Ll~ll-----~~~l~~~~~~~------ 64 (986)
+++++.|...+ ++|+..+++|-.-|..++..+- .-..+.+ ...-+.-.+.+ |+.|...+...
T Consensus 1 ~~~~~~le~tl--SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 1 MELLELLEKTL--SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred CcHHHHHHHHc--CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 35667777755 6888999999999988885321 1111111 00111111111 12222222211
Q ss_pred ccccccccccccCcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHc----cCC-HHHHH
Q psy15604 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLN----DED-QVVVS 139 (986)
Q Consensus 65 ~~~~~~~~~~~~g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~----~~~-~~~~~ 139 (986)
+++--..+ +..-.=..+.+-|.++++.....|+.+++.++.. + +-.+..|.|+..|. .+. ..+++
T Consensus 79 RWl~l~~e-~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~-E--------lP~n~wp~li~~lv~nv~~~~~~~~k~ 148 (859)
T KOG1241|consen 79 RWLQLPAE-IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI-E--------LPQNQWPELIVTLVSNVGEEQASMVKE 148 (859)
T ss_pred HHHcCCHH-HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh-h--------CchhhCHHHHHHHHHhcccccchHHHH
Confidence 11100000 0001222344555666666666777777666651 1 22344455555554 333 35899
Q ss_pred HHHHHHHHhcccCcchhHhhhCCchHHHHHHHHh-cCCCHHHHHHHHHHHHhhccC-ccc-hHHHHhcCChHHHHHhhCC
Q psy15604 140 QAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS-NSNDLETTKGAVGTLHNLSHH-RQG-LLAIFKSGGIPALVKLLSS 216 (986)
Q Consensus 140 ~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~~a~~~L~~ls~~-~~~-~~~i~~~g~i~~Lv~lL~~ 216 (986)
.++.+++.+|.+-+........+.++..++.-.+ .+++..+|-.|..+|.|--.. ..| ....-..=.....++.-++
T Consensus 149 ~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~ 228 (859)
T KOG1241|consen 149 SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS 228 (859)
T ss_pred HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC
Confidence 9999999999876555444455556666666555 456788999999999875332 111 1111111133455666788
Q ss_pred CCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhH---HHHHhC-----
Q psy15604 217 PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK---LIILAS----- 288 (986)
Q Consensus 217 ~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~---~~~~~~----- 288 (986)
++.+++..|..+|..+..-....-........++.-+.-++++++.+...+.+.=++++...-+.- ....+.
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS 308 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 899999999999998885443222223333344444555678888888888887777764211100 111222
Q ss_pred ----------CCHHHHHHHHhcCCh---H---HHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHH
Q psy15604 289 ----------QGPVELVRIMRSYDY---E---KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 352 (986)
Q Consensus 289 ----------g~v~~L~~ll~~~~~---~---~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~ 352 (986)
+.+|.|+++|...++ + ....++..+|..++.+.++ ..++.++.+...
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D-------~Iv~~Vl~Fiee---------- 371 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD-------DIVPHVLPFIEE---------- 371 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-------cchhhhHHHHHH----------
Confidence 455677777755211 1 1223333444444432221 112222222211
Q ss_pred HHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccc
Q psy15604 353 WTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKI 432 (986)
Q Consensus 353 ~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~ 432 (986)
-+++++..-+..+..+. .
T Consensus 372 -------------------------------------------------------~i~~pdwr~reaavmAF--G----- 389 (859)
T KOG1241|consen 372 -------------------------------------------------------NIQNPDWRNREAAVMAF--G----- 389 (859)
T ss_pred -------------------------------------------------------hcCCcchhhhhHHHHHH--H-----
Confidence 11222222221111111 1
Q ss_pred cccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHH
Q psy15604 433 NIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQ 512 (986)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 512 (986)
+.+ ..|.+.- ...+..+++|.+++++.++.-.++..
T Consensus 390 -----SIl---------------------------~gp~~~~------------Lt~iV~qalp~ii~lm~D~sl~VkdT 425 (859)
T KOG1241|consen 390 -----SIL---------------------------EGPEPDK------------LTPIVIQALPSIINLMSDPSLWVKDT 425 (859)
T ss_pred -----hhh---------------------------cCCchhh------------hhHHHhhhhHHHHHHhcCchhhhcch
Confidence 000 0000000 01112566888888888888888888
Q ss_pred HHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--C---ccc-hhhhhccCChHHHHH-
Q psy15604 513 AAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--H---RQG-LLAIFKSGGIPALVK- 584 (986)
Q Consensus 513 a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~---~~~-~~~i~~~~~i~~Lv~- 584 (986)
+++.|+.++..-.. +.........+..++.-|.+ .|.+-.+++|++.+|+. . +++ ...... ...+.++.
T Consensus 426 aAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~ 502 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGS 502 (859)
T ss_pred HHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHH
Confidence 88888888765431 11111112556666666654 58899999999999984 1 111 222222 23334443
Q ss_pred hcCC------CCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHH----hhc-----CC----CHhHHHHHHHHHHH
Q psy15604 585 LLSS------PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL----LLG-----RN----NVKFLAIVTDCLQI 645 (986)
Q Consensus 585 lL~~------~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~----ll~-----~~----~~~v~~~a~~aL~~ 645 (986)
+++. ...+.|..|-.+|..+..+++..--... .+....+.. .+. .. -.+++...|.+|..
T Consensus 503 Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~ 581 (859)
T KOG1241|consen 503 LLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQS 581 (859)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHH
Confidence 3322 2346889999999999988775322221 222222222 222 11 14678888999988
Q ss_pred HhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhC-CCCHHHHHHHH
Q psy15604 646 LAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG-HPSQRLVQNCL 724 (986)
Q Consensus 646 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~al 724 (986)
+.+..++....+.+ .....+++++.++....+.+.+..+.+.|...-.....-.-....+.|..-|. ..+..|...+.
T Consensus 582 i~rk~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV 660 (859)
T KOG1241|consen 582 IIRKVGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV 660 (859)
T ss_pred HHHHccccchhHHH-HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 88865443334433 46677888888754444555665555555433111111111223455555553 34567778888
Q ss_pred HHHHHhhcccc--cccchhchHHHHHHHhccC--ChhhHHHHHHHHhhhccC
Q psy15604 725 WTLRNLSDAGT--KVDGLESLLQSLVQLLASQ--DINVITCAAGVTVCQVGG 772 (986)
Q Consensus 725 ~~L~nLs~~~~--~~~~~~~~l~~L~~ll~~~--~~~i~~~a~~~L~ni~~g 772 (986)
+.++.|+..-. -.+.++++...|++.|+++ +.+++-....+.+.|+-.
T Consensus 661 glVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 661 GLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 99999984433 3466789999999999987 567777777777765443
No 32
>PRK09687 putative lyase; Provisional
Probab=99.31 E-value=2.1e-10 Score=119.82 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=179.5
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 571 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 571 (986)
...++.|...|.+++..++..++.+|..+.. ..+++.+..++++ .++.++..++++|+.+...+..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc--
Confidence 4458899999999999999999999987753 2456777776655 4899999999999998653221
Q ss_pred hhhccCChHHHHHh-cCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 572 AIFKSGGIPALVKL-LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 572 ~i~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
....++.|..+ ++++++.|+..|+.+|++++...... ...++..+...+.++++.|+..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 22356778776 67888999999999999987433211 12235556677788899999999999976542
Q ss_pred cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15604 651 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 651 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nL 730 (986)
...++.|+.++.+++ ..++..+..+|..+..... .+++.|...+.++++.|+..|.++|+++
T Consensus 158 ---------~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPN-GDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 246889999998877 4688888888888732221 4667788999999999999999999886
Q ss_pred hcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 731 SDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 731 s~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
-+ ...++.|+..+++++ ++..++.+|+++ |++.-+-.|..+
T Consensus 220 ~~--------~~av~~Li~~L~~~~--~~~~a~~ALg~i--g~~~a~p~L~~l 260 (280)
T PRK09687 220 KD--------KRVLSVLIKELKKGT--VGDLIIEAAGEL--GDKTLLPVLDTL 260 (280)
T ss_pred CC--------hhHHHHHHHHHcCCc--hHHHHHHHHHhc--CCHhHHHHHHHH
Confidence 43 467899999998765 678899999976 666777666664
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.30 E-value=1e-09 Score=118.67 Aligned_cols=354 Identities=15% Similarity=0.202 Sum_probs=233.6
Q ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcc-chHHHHhc-----CChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 163 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ-GLLAIFKS-----GGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 163 ~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
.++..++++|+...++++.+..+..+..|..... ....+.+. ....+++++|..++.-+...++..|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4578899999987889999999999999988744 44445543 46788889999888889999999999998654
Q ss_pred CCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCC-hHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD-YEKLLWCTSRVL 314 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~~~~~~a~~aL 314 (986)
..........-.+..+...+++ .+...+..++.+|..|.. .++.|..+.+.++++.|+.+++... .-.+.+.++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3321111111133455555654 346778888899999887 4669999999999999999998755 445899999999
Q ss_pred HHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhC-----
Q psy15604 315 KVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQD----- 389 (986)
Q Consensus 315 ~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~----- 389 (986)
|.|+-.+.....+.+.+.++.++.++.. +..+.+-+.+..+|.|+...
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~---------------------------s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKE---------------------------STKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHh---------------------------hhhHHHHHHHHHHHHHHhhcccccc
Confidence 9999877666677788999999998866 34455666666677776542
Q ss_pred --hhhHHHHHhcCCcHHHHHHhccCchhHHH--HHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHH
Q psy15604 390 --KEGAETIEAEGATAPLTDLLHSRNEGVEI--LIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQ 465 (986)
Q Consensus 390 --~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~--~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 465 (986)
......|++.|..+.+-.+....-.+.+. -...+.
T Consensus 265 ~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~----------------------------------------- 303 (429)
T cd00256 265 VKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLT----------------------------------------- 303 (429)
T ss_pred hhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHH-----------------------------------------
Confidence 23445666776665555544432211111 111110
Q ss_pred hcCCCcHHHHHHHHHHhcCCc-hhhhhcCCHHHHHHHhcCCCHHH-HHHHHHHHHHhhhccccchhhhcccCcHHHHHHh
Q psy15604 466 RLTEPSQMLKHAVVNLINYQD-DADLATRAIPELIKLLNDEDQVV-VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHA 543 (986)
Q Consensus 466 ~l~~~~~~~~~a~~~l~~~~~-~~~~~~~~i~~L~~ll~~~~~~~-~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~l 543 (986)
+.+...+..+.++.. ..++..|.+.. . --+.++.. ++++.. +. .+ .-.+++.|+++
T Consensus 304 ------e~L~~~~k~ltsfD~Y~~El~sg~L~W--S-p~H~se~FW~EN~~k-f~---~~---------~~~llk~L~~i 361 (429)
T cd00256 304 ------EELKNSVQDLSSFDEYKSELRSGRLHW--S-PVHKSEKFWRENADR-LN---EK---------NYELLKILIHL 361 (429)
T ss_pred ------HHHHHHHHHcCCHHHHHHHHhcCCccC--C-CCCCCchHHHHHHHH-HH---hc---------chHHHHHHHHH
Confidence 111112222222110 11222222211 0 00111111 111111 10 00 12567889999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcC
Q psy15604 544 ISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH 607 (986)
Q Consensus 544 L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 607 (986)
|..++++.+..-|+.=++.+.. .|.++..+-+.|+=..+.+++.+++++|+.+|+.+++.+..+
T Consensus 362 L~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 362 LETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9777788888888888888888 788898888999999999999999999999999999988643
No 34
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=9.2e-10 Score=114.99 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=191.4
Q ss_pred chhHHHHhcCCCcHHHHHHH-HHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcH
Q psy15604 459 AQPTAVQRLTEPSQMLKHAV-VNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMV 537 (986)
Q Consensus 459 ~~~~~v~~l~~~~~~~~~a~-~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i 537 (986)
....+...+.+++..++... ..|.... ....++.+..+++++++.+|..++++|+.+...... ....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHH
Confidence 34566677777777666443 3333222 133467888899999999999999999998654321 12467
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHH
Q psy15604 538 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL 617 (986)
Q Consensus 538 ~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~ 617 (986)
+.|..++..+.++.++..++.+|++++...... ...+++.+...+.+++..|+..++++|+.+. .
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----------~ 157 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----------D 157 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----------C
Confidence 788877666678999999999999996522111 1234566778888999999999999998764 2
Q ss_pred hCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCch
Q psy15604 618 AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP 697 (986)
Q Consensus 618 ~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~ 697 (986)
..+++.|+.+++++++.++..++.+|..+..+.+ ..++.|+.++.+.+ ..++..+.++|..+..
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~-~~VR~~A~~aLg~~~~------ 221 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKN-EEIRIEAIIGLALRKD------ 221 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCC-hHHHHHHHHHHHccCC------
Confidence 3578999999999999999999999999844322 46778889998777 6778888888877643
Q ss_pred hHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhc-cCChhhHHHHHHHHh
Q psy15604 698 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLA-SQDINVITCAAGVTV 767 (986)
Q Consensus 698 ~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~-~~~~~i~~~a~~~L~ 767 (986)
..+++.|+..+.+++ ++..++.+|+++.+ ...++.|..++. ++|..++..|.|+|.
T Consensus 222 ----~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 ----KRVLSVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ----hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 247899999998866 67789999999865 467899999996 779999999999885
No 35
>KOG2023|consensus
Probab=99.25 E-value=9.8e-09 Score=111.28 Aligned_cols=540 Identities=16% Similarity=0.137 Sum_probs=286.4
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHH--Hh---CCCHHHHHHHHccCCHHHHHHHHHHHHHhccc
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDAD--LA---TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK 151 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i--~~---~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~ 151 (986)
..++.|+.+|.+++....+-|.+||..+.. +....-.. .. .-.+|.++.+.+++++.+|..|...+...--.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcE---Dsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICE---DSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHh---hhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 478999999999998888877777766654 33111100 00 12468899999999999999998888765533
Q ss_pred CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHH
Q psy15604 152 EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHN 231 (986)
Q Consensus 152 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 231 (986)
. .+..+..-..+++.+..+- +.+++++|...+.+|..|......+-.=--.++|+.++..-++.++++-..|+.....
T Consensus 205 ~-~qal~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 205 Q-TQALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred C-cHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 2 1111222123455555544 4479999999999999886542211111113577778888888899999999999999
Q ss_pred HhcCCCCchHHHHH--cCcHHHHHHHh----------cc-CC--------------------------------------
Q psy15604 232 LLLHQEGSKMAVRL--AGGLQKMVLLL----------GR-NN-------------------------------------- 260 (986)
Q Consensus 232 L~~~~~~~~~~i~~--~g~i~~L~~ll----------~~-~~-------------------------------------- 260 (986)
++ ..+..+..+.. ...+|.|++-+ ++ ++
T Consensus 283 ~a-eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 283 LA-EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred Hh-cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 99 66655554432 13455544332 20 00
Q ss_pred -------HHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHh----cCChHHHHHHHHHHHHHhhhCCCChHHHHH
Q psy15604 261 -------VKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMR----SYDYEKLLWCTSRVLKVLSVCSSNKPAIVE 329 (986)
Q Consensus 261 -------~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~----~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 329 (986)
..++...+.+|-.|+. +.....++.++.+++ +.++ .+++++.-||..++. ++-+-++.
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W-~vrEagvLAlGAIAE--GcM~g~~p 430 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEW-KVREAGVLALGAIAE--GCMQGFVP 430 (885)
T ss_pred cccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchh-hhhhhhHHHHHHHHH--HHhhhccc
Confidence 1233334445544443 122233455555555 3344 488888888877763 12222222
Q ss_pred h--ccHHHHHHHhCCCCHHHHHHHHHHHhcccccc----c----------ccccccCCchHHHHHHHHHHHHHhhChhhH
Q psy15604 330 A--GGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG----T----------KVSLLFNEIENIQRVAAGLLCELAQDKEGA 393 (986)
Q Consensus 330 ~--g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~----~----------~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 393 (986)
. -.++.++..|.+..+-++.-.-|+|+..+.-- . .+..+-..+..+|+.||.+++.+-.+ ..
T Consensus 431 ~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~--A~ 508 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE--AG 508 (885)
T ss_pred chHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--cc
Confidence 1 25788888889999988888889988875522 1 14555578899999999999887432 11
Q ss_pred HHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHH
Q psy15604 394 ETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQM 473 (986)
Q Consensus 394 ~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 473 (986)
.. .+|.|-.+|..-. . +.-.|...+. .+
T Consensus 509 ~e-----LVp~l~~IL~~l~--------~--af~kYQ~KNL----lI--------------------------------- 536 (885)
T KOG2023|consen 509 EE-----LVPYLEYILDQLV--------F--AFGKYQKKNL----LI--------------------------------- 536 (885)
T ss_pred ch-----hHHHHHHHHHHHH--------H--HHHHHhhcce----eh---------------------------------
Confidence 12 2223322222100 0 0000100000 00
Q ss_pred HHHHHHHHhcCC----chhhhhcCCHHHHHH---HhcCCCHHHH--HHHHHHHHHhhh-cc-ccchhhhc-ccCcHHHHH
Q psy15604 474 LKHAVVNLINYQ----DDADLATRAIPELIK---LLNDEDQVVV--SQAAMMVHQLSK-KE-ASRHAIMN-SPQMVAALV 541 (986)
Q Consensus 474 ~~~a~~~l~~~~----~~~~~~~~~i~~L~~---ll~~~~~~~~--~~a~~~L~~l~~-~~-~~~~~l~~-~~~~i~~L~ 541 (986)
+..++..|.+.- ..+....--+|.|+. +++++|.++- .+|...+..-.. .- +-...+.. .-.++..-.
T Consensus 537 LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~ 616 (885)
T KOG2023|consen 537 LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTL 616 (885)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Confidence 001111111000 000000111333333 3444443321 122222211100 00 00111110 001111111
Q ss_pred HhhcCC--------CCHHHHHHHHHHHHHhhC-Cccch-hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-
Q psy15604 542 HAISNS--------NDLETTKGAVGTLHNLSH-HRQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG- 610 (986)
Q Consensus 542 ~lL~~~--------~~~~~~~~a~~~L~~ls~-~~~~~-~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~- 610 (986)
+.+.+. .+.+....++..+..|+. -..+. ..+.+++....+..++++..++||+.+...|+.++....+
T Consensus 617 q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~ 696 (885)
T KOG2023|consen 617 QLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEH 696 (885)
T ss_pred HHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHh
Confidence 111111 122334455556666665 22333 3445678888889999999999999999999999976422
Q ss_pred ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC-cccHHHHHhCCChHHHHHHHhcC-ChhHHHHHHHHHHHH
Q psy15604 611 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN-QESKLIILASQGPVELVRIMRSY-DYEKLLWCTSRVLKV 688 (986)
Q Consensus 611 ~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~~~~~L~~ 688 (986)
.+..+ ...++.|-.-+...+..+..+|+|++..++..- .+.+ ..+. ..+..|+.++... .+..+.+...-.++.
T Consensus 697 v~p~~--~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~-~~v~-~vl~~L~~iin~~~~~~tllENtAITIGr 772 (885)
T KOG2023|consen 697 VIPNL--ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK-QYVS-PVLEDLITIINRQNTPKTLLENTAITIGR 772 (885)
T ss_pred ccchH--HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh-hHHH-HHHHHHHHHhcccCchHHHHHhhhhhhhh
Confidence 11111 122333333344456678889999999998742 2333 2222 2455666666654 334455555545555
Q ss_pred hhc
Q psy15604 689 LSV 691 (986)
Q Consensus 689 Ls~ 691 (986)
|..
T Consensus 773 Lg~ 775 (885)
T KOG2023|consen 773 LGY 775 (885)
T ss_pred hhc
Confidence 543
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=2.3e-09 Score=131.73 Aligned_cols=119 Identities=22% Similarity=0.204 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
++.|..+++++++.+|..|+.+|..+.... ..+..+...|.+. ++.++..|+++|..+..
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--------- 836 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--------- 836 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc---------
Confidence 677888889999999999999998874432 2345567777654 78899999999987743
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHH
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQ 644 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~ 644 (986)
...++.|+.+|++++..|+..|+++|+.+.. . ....+.|...++++++.|+..+..+|.
T Consensus 837 -~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 -DVAVPALVEALTDPHLDVRKAAVLALTRWPG-D---------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred -cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-C---------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2356899999999999999999999988621 1 234667778888889999999888875
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.19 E-value=1.2e-06 Score=102.81 Aligned_cols=522 Identities=13% Similarity=0.060 Sum_probs=311.0
Q ss_pred hCCCHHHHHHHHccCCHHHHHHHH-HHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccc
Q psy15604 119 ATRAIPELIKLLNDEDQVVVSQAA-MMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG 197 (986)
Q Consensus 119 ~~g~i~~L~~ll~~~~~~~~~~a~-~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~ 197 (986)
..|-+..|-+.|.+.+..-+..+. +++..++...+... +++.+++++.+ +|.++++.....|.+++.....
T Consensus 30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~-------LF~dVvk~~~S-~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY-------LFVDVVKLAPS-TDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH-------HHHHHHHHhCC-CCHHHHHHHHHHHHHHcccChH
Confidence 366788888889888776666564 56677766543321 35777777766 6999999999999999775322
Q ss_pred hHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 198 LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 198 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
...+ ++..|.+=+.++++.++..|+++++++-. . + +. .-.++.+.+.+.+.++-++..|+.++..+...
T Consensus 102 lalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~-~----i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 102 KALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-S-S----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-H-H----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 2222 56788888899999999999999988762 1 1 21 23466778888889999999999999999765
Q ss_pred ChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhc
Q psy15604 278 NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRN 357 (986)
Q Consensus 278 ~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ 357 (986)
+++ .+.+.+.++.|.+++...+.. +..+|+.+|..+....... .-...+.+..++..+.+
T Consensus 171 ~pe---lv~~~~~~~~L~~LL~D~dp~-Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e--------------- 230 (746)
T PTZ00429 171 DMQ---LFYQQDFKKDLVELLNDNNPV-VASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPE--------------- 230 (746)
T ss_pred Ccc---cccccchHHHHHHHhcCCCcc-HHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhc---------------
Confidence 553 344567788999988876665 7788888888776432221 11122233344443333
Q ss_pred ccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccccc
Q psy15604 358 LSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRG 437 (986)
Q Consensus 358 ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~ 437 (986)
-++-.|.....+|.... +..... ....+..+...+++.+..+-..+..+. +.+...
T Consensus 231 -------------~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~i--l~l~~~----- 286 (746)
T PTZ00429 231 -------------CNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVV--ANLASR----- 286 (746)
T ss_pred -------------CChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHH--HHhcCc-----
Confidence 23444555555554322 111000 013566677778877766544333322 211100
Q ss_pred ccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy15604 438 CLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMV 517 (986)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 517 (986)
+. + ......+ ....+.++.+ .+.++++|.-++..+
T Consensus 287 --~~-------------------~----------~~~~~~~-------------~rl~~pLv~L-~ss~~eiqyvaLr~I 321 (746)
T PTZ00429 287 --CS-------------------Q----------ELIERCT-------------VRVNTALLTL-SRRDAETQYIVCKNI 321 (746)
T ss_pred --CC-------------------H----------HHHHHHH-------------HHHHHHHHHh-hCCCccHHHHHHHHH
Confidence 00 0 0000111 0112445555 456789999998888
Q ss_pred HHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHH
Q psy15604 518 HQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYA 597 (986)
Q Consensus 518 ~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a 597 (986)
..+..... .++.. -+..+.-. ..+...++...+.+|..++.. ++...+ +..|.....+.+.+++..+
T Consensus 322 ~~i~~~~P---~lf~~--~~~~Ff~~--~~Dp~yIK~~KLeIL~~Lane-~Nv~~I-----L~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 322 HALLVIFP---NLLRT--NLDSFYVR--YSDPPFVKLEKLRLLLKLVTP-SVAPEI-----LKELAEYASGVDMVFVVEV 388 (746)
T ss_pred HHHHHHCH---HHHHH--HHHhhhcc--cCCcHHHHHHHHHHHHHHcCc-ccHHHH-----HHHHHHHhhcCCHHHHHHH
Confidence 77765442 22221 12322222 223456899999999999864 344443 3667777778889999999
Q ss_pred HHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHH--hcCCh
Q psy15604 598 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIM--RSYDY 675 (986)
Q Consensus 598 ~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~ 675 (986)
+.+++.++...+... ...+..|++++.... .+...+..++.++.+..|... .+..|+..+ ..-+.
T Consensus 389 IrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~~-------il~~L~~~~~~~~i~e 455 (746)
T PTZ00429 389 VRAIASLAIKVDSVA-----PDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPELL-------MLDTLVTDYGADEVVE 455 (746)
T ss_pred HHHHHHHHHhChHHH-----HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCccHH-------HHHHHHHhhccccccc
Confidence 999999997654322 355677888886643 355567888999988655421 233444332 12233
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhc-ccccccchhchHHHHHHHh-c-
Q psy15604 676 EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD-AGTKVDGLESLLQSLVQLL-A- 752 (986)
Q Consensus 676 ~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~-~~~~~~~~~~~l~~L~~ll-~- 752 (986)
...+....|.++..+..-.+.. ..+..++.-+...++.++...+.+...+.- .+.+ ....+..++... .
T Consensus 456 ~~AKaaiiWILGEy~~~I~~a~-----~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~---~~~~l~~vL~~~t~~ 527 (746)
T PTZ00429 456 EEAKVSLLWMLGEYCDFIENGK-----DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG---MEPQLNRVLETVTTH 527 (746)
T ss_pred HHHHHHHHHHHHhhHhhHhhHH-----HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHhc
Confidence 4455566777777654322211 123333444445677888888877776652 2211 234455555443 3
Q ss_pred cCChhhHHHHHHHHhhhccCc-HHHHHHHHh
Q psy15604 753 SQDINVITCAAGVTVCQVGGV-EALVQTIVN 782 (986)
Q Consensus 753 ~~~~~i~~~a~~~L~ni~~g~-~~~v~~l~~ 782 (986)
+.|+++|..|..-..=+..+. .+.+..++.
T Consensus 528 ~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~ 558 (746)
T PTZ00429 528 SDDPDVRDRAFAYWRLLSKGITVAQMKKVVH 558 (746)
T ss_pred CCChhHHHHHHHHHHHHcCCCcHHHHHHHHc
Confidence 457889888774332122232 244555554
No 38
>KOG1824|consensus
Probab=99.14 E-value=5.6e-06 Score=93.94 Aligned_cols=222 Identities=13% Similarity=0.085 Sum_probs=142.1
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHH
Q psy15604 538 AALVHAIS-NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 616 (986)
Q Consensus 538 ~~L~~lL~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~ 616 (986)
..|+.-++ ...+..++..|.-.|+.+...... ....+.-..+++.+++++++++..|..+|++++..+-
T Consensus 820 ~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl------- 889 (1233)
T KOG1824|consen 820 TKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL------- 889 (1233)
T ss_pred HHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch-------
Confidence 33444343 333456777788788887662211 1122333477889999999999999999999996543
Q ss_pred HhCcHHHHHHhhcCCCHhHHHHHHHHHHH-HhcCCcccHHHHHhCCChHHHHHHHhcC---ChhHHHHHHHHHHHHhhcC
Q psy15604 617 LAGGLQKMVLLLGRNNVKFLAIVTDCLQI-LAYGNQESKLIILASQGPVELVRIMRSY---DYEKLLWCTSRVLKVLSVC 692 (986)
Q Consensus 617 ~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~-L~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~~~~~~~~~~L~~Ls~~ 692 (986)
...+|-+++.+.+.. +=+......|.. +.+.+.+ .. ...++.++.+|..+ ..+..+.-...+|+.|...
T Consensus 890 -~~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd----~~-~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ 962 (1233)
T KOG1824|consen 890 -PKYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVD----GL-KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLI 962 (1233)
T ss_pred -HhHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccc----hh-hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC
Confidence 344566666665532 112222222222 2222111 11 13466777766533 2345566666777777654
Q ss_pred CCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh-cccccc-cchhchHHHHHHHhccCChhhHHHHHHHHhhhc
Q psy15604 693 SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS-DAGTKV-DGLESLLQSLVQLLASQDINVITCAAGVTVCQV 770 (986)
Q Consensus 693 ~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs-~~~~~~-~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~ 770 (986)
.+ ...++.|-..+.++++..+..++.+++-.- +.+... ......+..+..+++++|.++|..|..++.-.+
T Consensus 963 ep-------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 963 EP-------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred Ch-------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 33 245788888899999988888887776554 333332 223467778889999999999999999998888
Q ss_pred cCcHHHHHHHHhc
Q psy15604 771 GGVEALVQTIVNA 783 (986)
Q Consensus 771 ~g~~~~v~~l~~~ 783 (986)
-..+++|.-+.+-
T Consensus 1036 hNKpslIrDllpe 1048 (1233)
T KOG1824|consen 1036 HNKPSLIRDLLPE 1048 (1233)
T ss_pred ccCHhHHHHHHHH
Confidence 8889998888765
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=1.1e-08 Score=125.88 Aligned_cols=274 Identities=18% Similarity=0.150 Sum_probs=205.5
Q ss_pred cccCcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCc
Q psy15604 74 LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA 153 (986)
Q Consensus 74 ~~~g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~ 153 (986)
.+.+.++.|+..|++++..++..|+.+|..+. ..+.++.|..+|+++++.+|..|+.+|..+.....
T Consensus 618 l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 618 LDAPSVAELAPYLADPDPGVRRTAVAVLTETT-------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 34567888999999999999988888765432 24578899999999999999999999987743211
Q ss_pred chhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHh
Q psy15604 154 SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 233 (986)
Q Consensus 154 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 233 (986)
..+.|...|.+ +|+.+|..|+.+|..+.. +-...|+..|.++++.++..|+.+|..+.
T Consensus 685 ----------~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 685 ----------PAPALRDHLGS-PDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred ----------chHHHHHHhcC-CCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 12566677776 788999999999988742 22456778899999999999999988652
Q ss_pred cCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHH
Q psy15604 234 LHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRV 313 (986)
Q Consensus 234 ~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~a 313 (986)
..+.|..++.++++.++..++.+|..+..... ..++.|..+++.+++. ++..++.+
T Consensus 743 --------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~-VR~aA~~a 798 (897)
T PRK13800 743 --------------DVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPL-VRAAALAA 798 (897)
T ss_pred --------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHH-HHHHHHHH
Confidence 12456788888999999999999988854221 2367888888887754 88888888
Q ss_pred HHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccc---ccccccccCCchHHHHHHHHHHHHHhhCh
Q psy15604 314 LKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA---GTKVSLLFNEIENIQRVAAGLLCELAQDK 390 (986)
Q Consensus 314 L~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~---~~~i~ll~~~~~~~~~~a~~~L~~l~~~~ 390 (986)
|..+.... ...+.+...+.+++..++..++.+|..+... ..++.++.++++.++..|+.+|..+..++
T Consensus 799 Lg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~ 869 (897)
T PRK13800 799 LAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP 869 (897)
T ss_pred HHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH
Confidence 76654321 1125578889999999999999999988543 23588888999999999999999974333
Q ss_pred hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH
Q psy15604 391 EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424 (986)
Q Consensus 391 ~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~ 424 (986)
. ..+.|...+.+.+..++..+..++
T Consensus 870 ~---------a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 870 A---------ARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred H---------HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 356677888888888877666554
No 40
>KOG2023|consensus
Probab=99.12 E-value=3.2e-08 Score=107.38 Aligned_cols=585 Identities=13% Similarity=0.090 Sum_probs=327.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH--hhhC--CchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA--IMNS--PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG 197 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~--i~~~--~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~ 197 (986)
.+|.|..+|.+++....+-|..+|.+++.++.-.-. .... .-++|.++.+.+. +++.+|..|..++-.......
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCc-
Confidence 468899999999999999999999999987532111 1111 2357889998887 699999999988877654422
Q ss_pred hHHHHh-cCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 198 LLAIFK-SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 198 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
+..++. ...++.+..+-.+.+++++++.+.++..|....++.- .-.-.+.++-+++.-.+.++.+...|++....+|.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 222222 2356677777888999999999999999984443211 11113567777777777778888889999989987
Q ss_pred cChhhHHHHHh--CCCHHHHHHHHhcCChH--------------------------------------------------
Q psy15604 277 GNQESKLIILA--SQGPVELVRIMRSYDYE-------------------------------------------------- 304 (986)
Q Consensus 277 ~~~~~~~~~~~--~g~v~~L~~ll~~~~~~-------------------------------------------------- 304 (986)
. +..+..+.. ...+|.|++-+...+.+
T Consensus 286 q-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 Q-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred C-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 3 334443332 24556665544332211
Q ss_pred -----HHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHH----hCCCCHHHHHHHHHHHhcccccc-------------
Q psy15604 305 -----KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMH----LGHPSQRLVQNCLWTLRNLSDAG------------- 362 (986)
Q Consensus 305 -----~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~l----l~~~~~~~~~~~~~~L~~ls~~~------------- 362 (986)
.+|.+.+.+|-.|+. +.....++.++.+ |.+..=.+++++.-+|+.++...
T Consensus 365 ~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip 437 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIP 437 (885)
T ss_pred ccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHH
Confidence 022222333333321 2333344444444 44544456666666666654422
Q ss_pred cccccccCCchHHHHHHHHHHHHHhhCh--hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccc
Q psy15604 363 TKVSLLFNEIENIQRVAAGLLCELAQDK--EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLM 440 (986)
Q Consensus 363 ~~i~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 440 (986)
..+.++.+..+-++...|..|.+.+.-- +.+.++.. ..+..|++.+-+++..++.+++.+.|.+.
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtle------------ 504 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLE------------ 504 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHH------------
Confidence 1377788888999999999998876321 22322222 13445555555677788887777664441
Q ss_pred cccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy15604 441 FPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQL 520 (986)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 520 (986)
++ +.+.+|-.++ ..+...+...-+|| ..+--+...|+..|+.-
T Consensus 505 -E~---------------A~~eLVp~l~---~IL~~l~~af~kYQ------------------~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 505 -EE---------------AGEELVPYLE---YILDQLVFAFGKYQ------------------KKNLLILYDAIGTLADS 547 (885)
T ss_pred -Hh---------------ccchhHHHHH---HHHHHHHHHHHHHh------------------hcceehHHHHHHHHHHH
Confidence 11 1111111111 00111111112222 23444556666666665
Q ss_pred hhccccchhhhcccCcHHHHHHhhc--CCCCHHHHHHHHHHHHHhhC--C---ccchhhhhc--cCC----hHHHHHhcC
Q psy15604 521 SKKEASRHAIMNSPQMVAALVHAIS--NSNDLETTKGAVGTLHNLSH--H---RQGLLAIFK--SGG----IPALVKLLS 587 (986)
Q Consensus 521 ~~~~~~~~~l~~~~~~i~~L~~lL~--~~~~~~~~~~a~~~L~~ls~--~---~~~~~~i~~--~~~----i~~Lv~lL~ 587 (986)
..+.-+..+.++ -.+|+|++-.. +++|.+ ...-..+|..++. . -.....+++ -.. +..+...-+
T Consensus 548 vg~~Ln~~~Yiq--iLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~ 624 (885)
T KOG2023|consen 548 VGHALNKPAYIQ--ILMPPLIEKWELLSDSDKD-LFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQ 624 (885)
T ss_pred HHHhcCcHHHHH--HhccHHHHHHHhcCcccch-HHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccC
Confidence 544433333332 34556655432 111322 1222333333332 0 011111110 000 111111111
Q ss_pred -----CCCHhHHHHHHHHHHHhhcCC-CCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCC
Q psy15604 588 -----SPVESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQ 661 (986)
Q Consensus 588 -----~~~~~v~~~a~~aL~nl~~~~-~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~ 661 (986)
.++.+....++-.+.-|+..- ......+.+++....|..++.++-|+|+..+...|..|+..-. ..+. +
T Consensus 625 ~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~----~~v~-p 699 (885)
T KOG2023|consen 625 DPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF----EHVI-P 699 (885)
T ss_pred CccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----Hhcc-c
Confidence 122334444555555555442 2355667778888888999999999999999999998886421 1111 1
Q ss_pred ChHHHHHHHhcC---ChhHHHHHHHHHHHHhhcCCC--CchhHHhcCcHHHHHHhhCCCC--HHHHHHHHHHHHHhhccc
Q psy15604 662 GPVELVRIMRSY---DYEKLLWCTSRVLKVLSVCSS--NKPAIVEAGGMQALAMHLGHPS--QRLVQNCLWTLRNLSDAG 734 (986)
Q Consensus 662 ~~~~L~~ll~~~---~~~~~~~~~~~~L~~Ls~~~~--~~~~l~~~g~~~~L~~ll~~~~--~~v~~~al~~L~nLs~~~ 734 (986)
....++.++... +.-.....|+|+++.++..-. .++.+ ..++..|...+..+. ..+.++..-+++.|.-..
T Consensus 700 ~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v--~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~ 777 (885)
T KOG2023|consen 700 NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYV--SPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC 777 (885)
T ss_pred hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence 222333333322 233566788999999876532 23222 235566666666543 578899999999998444
Q ss_pred cc--ccchhchHHHHHHHhccC-ChhhHHHHHHHHhhhccCcHHHH
Q psy15604 735 TK--VDGLESLLQSLVQLLASQ-DINVITCAAGVTVCQVGGVEALV 777 (986)
Q Consensus 735 ~~--~~~~~~~l~~L~~ll~~~-~~~i~~~a~~~L~ni~~g~~~~v 777 (986)
.+ .+..+.++......++.- |.+-+..|-.-++||..-++..+
T Consensus 778 Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 778 PEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV 823 (885)
T ss_pred HHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh
Confidence 33 234456667776666654 44556667888888777666543
No 41
>KOG1824|consensus
Probab=99.12 E-value=1.6e-05 Score=90.46 Aligned_cols=755 Identities=14% Similarity=0.147 Sum_probs=359.6
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHH
Q psy15604 121 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA 200 (986)
Q Consensus 121 g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 200 (986)
+....++.-+.+....++..++.+|+.++..- ++....+ ++..|++-|.+...+...+--..+|..++.....+--
T Consensus 174 ~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~~---li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~ 249 (1233)
T KOG1824|consen 174 SILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYVE---LIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFG 249 (1233)
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHHH---HHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhh
Confidence 34445566666777889999999999988642 2222322 4577777676555665555566667776665333322
Q ss_pred HHhcCChHHHHHhh---CCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-------------------
Q psy15604 201 IFKSGGIPALVKLL---SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR------------------- 258 (986)
Q Consensus 201 i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~------------------- 258 (986)
-.-...+|.+.+.+ +..+++++++++.++..+....+..-..+. ...+..+++.+..
T Consensus 250 ~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yisYDPNy~yd~~eDed~~~~ed 328 (1233)
T KOG1824|consen 250 SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYISYDPNYNYDTEEDEDAMFLED 328 (1233)
T ss_pred cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHhccCCCCCCCCccchhhhhhhc
Confidence 22235788899998 677889999999999888855442111110 1112222333210
Q ss_pred ---------------CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCC
Q psy15604 259 ---------------NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 323 (986)
Q Consensus 259 ---------------~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~ 323 (986)
-+.+++.+++.++..+-....+.-..+.+.-+ |.++.=++..+.. ++.-...++..+-.....
T Consensus 329 ~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~-p~lI~RfkEREEn-Vk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 329 EEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLG-PALISRFKEREEN-VKADVFHAYIALLKQTRP 406 (1233)
T ss_pred cccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhC-HHHHHHHHHHhhh-HHHHHHHHHHHHHHcCCC
Confidence 01367788899988886655656555555444 5555555554332 444333443333222111
Q ss_pred -------hHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHH
Q psy15604 324 -------KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETI 396 (986)
Q Consensus 324 -------~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 396 (986)
.+.+-+ |+.+.=..++.+..+.++...-.-+ ++.+...+..|...|..+...- ...+
T Consensus 407 ~~~~~~d~d~~e~-~g~~s~~~~L~~~~~~iVkai~~ql-------------r~ks~kt~~~cf~lL~eli~~l--p~~l 470 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQ-GGTPSDLSMLSDQVPLIVKAIQKQL-------------REKSVKTRQGCFLLLTELINVL--PGAL 470 (1233)
T ss_pred CcccccCchhhhc-cCCccchHHHHhhhHHHHHHHHHHH-------------hhccccchhhHHHHHHHHHHhC--cchh
Confidence 112222 4444333333333333332222211 1222223334444444433110 0111
Q ss_pred Hh--cCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCc----hhHHHHhcCCC
Q psy15604 397 EA--EGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTA----QPTAVQRLTEP 470 (986)
Q Consensus 397 ~~--~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~~ 470 (986)
.+ ...+|.++.-+.+.+........+..-++.. +. .-++..|.+. .+.++....++
T Consensus 471 ~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~----------L~--------s~~p~~fhp~~~~Ls~~v~~aV~d~ 532 (1233)
T KOG1824|consen 471 AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSA----------LI--------SHPPEVFHPHLSALSPPVVAAVGDP 532 (1233)
T ss_pred hhcccccchhhhhhcCCccchHHHHHHHHHHHHHH----------Hh--------cCChhhcccchhhhhhHHHHHhcCc
Confidence 11 1245555555554333222211111111100 00 0011111121 22233333333
Q ss_pred cHHHH-HHHHH---Hhc----CCchhhh-----hcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhhccccchhhhcccC
Q psy15604 471 SQMLK-HAVVN---LIN----YQDDADL-----ATRAIPELIKLLN--DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQ 535 (986)
Q Consensus 471 ~~~~~-~a~~~---l~~----~~~~~~~-----~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~ 535 (986)
-..+. .++.. +++ .+....+ ....+...++.++ +.|.++++.|+.+++.+...-...-..- -+.
T Consensus 533 fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e-L~~ 611 (1233)
T KOG1824|consen 533 FYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE-LPR 611 (1233)
T ss_pred hHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh-hHH
Confidence 22111 11111 111 1111111 1122333344444 4589999999999998855443211111 134
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh-hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChH
Q psy15604 536 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKM 613 (986)
Q Consensus 536 ~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~ 613 (986)
.++.+++-|+ +.-++..|+.+++.++.++-... .-+-..+++.+...++......+...+.++-.|...... ...
T Consensus 612 ~L~il~eRl~---nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~ 688 (1233)
T KOG1824|consen 612 TLPILLERLG---NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA 688 (1233)
T ss_pred HHHHHHHHHh---chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 5666666664 45678899999999988553332 112244677788888777777777777777777655432 222
Q ss_pred HHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHH----HHHHH-
Q psy15604 614 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTS----RVLKV- 688 (986)
Q Consensus 614 ~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~----~~L~~- 688 (986)
... .-++..+-.++..++..+-..+..+|..+....|. .........+..++.+++++--......++ .++..
T Consensus 689 ~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps-~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 689 ELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPS-SLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 221 22233344455555555556666666666655332 223333345666666666552110000100 00000
Q ss_pred ------------hhcCCCC--------chhHHh-cCcHHHH---------------H-HhhC-CCCHHHHHHHHHHHHHh
Q psy15604 689 ------------LSVCSSN--------KPAIVE-AGGMQAL---------------A-MHLG-HPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 689 ------------Ls~~~~~--------~~~l~~-~g~~~~L---------------~-~ll~-~~~~~v~~~al~~L~nL 730 (986)
+..++.. +++... +..+.+| . ++.. ..+..++.-|+-.++.+
T Consensus 767 ~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 767 KEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred CCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 0000000 000000 0011111 1 1111 12345555566666655
Q ss_pred hcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHH-HHHhc----CCcc-----cccc-cccccC--
Q psy15604 731 SDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQ-TIVNA----GDRE-----EITE-PADHSV-- 797 (986)
Q Consensus 731 s~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~-~l~~~----~~~~-----~~~e-~~~~~~-- 797 (986)
-.... .....++-..++.-+++++++++.+|..+|++++.|+-+..- -+.+. .++. -.+| ..|.+.
T Consensus 847 gr~~~-~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~ 925 (1233)
T KOG1824|consen 847 GRRKD-LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDG 925 (1233)
T ss_pred ccCCC-CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccch
Confidence 42111 111235566788889999999999999999999998754322 22111 1110 0011 111100
Q ss_pred --CchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhh
Q psy15604 798 --NMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEI 875 (986)
Q Consensus 798 --~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v 875 (986)
...+.|+-+.-+.+ .++....-.+ +. .|.|+- ..++...-+.+|. ....+..+.+
T Consensus 926 ~~~~v~~IW~lL~k~c----E~~eegtR~v---------vA---ECLGkL-----~l~epesLlpkL~--~~~~S~a~~~ 982 (1233)
T KOG1824|consen 926 LKPYVEKIWALLFKHC----ECAEEGTRNV---------VA---ECLGKL-----VLIEPESLLPKLK--LLLRSEASNT 982 (1233)
T ss_pred hhhhHHHHHHHHHHhc----ccchhhhHHH---------HH---HHhhhH-----HhCChHHHHHHHH--HHhcCCCcch
Confidence 01111111111111 0000000000 00 011100 0112233455666 6667888888
Q ss_pred HHHHHHHHHHhhcCCchH--HHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhccccchhhhhcCcHHHHHH
Q psy15604 876 TEPAVCALRHLTSRHVES--EMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVI 953 (986)
Q Consensus 876 ~e~a~~~l~~l~~~~~~~--~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~~~l~~ 953 (986)
+.-++.+.+-....+|.. ......+ .-...+++.+ +-.|.|.++.++...+ .||+.+.. ++.|.|.-
T Consensus 983 rs~vvsavKfsisd~p~~id~~lk~~i------g~fl~~~~dp-Dl~VrrvaLvv~nSaa---hNKpslIr-DllpeLLp 1051 (1233)
T KOG1824|consen 983 RSSVVSAVKFSISDQPQPIDPLLKQQI------GDFLKLLRDP-DLEVRRVALVVLNSAA---HNKPSLIR-DLLPELLP 1051 (1233)
T ss_pred hhhhhheeeeeecCCCCccCHHHHHHH------HHHHHHHhCC-chhHHHHHHHHHHHHH---ccCHhHHH-HHHHHHHH
Confidence 888888888766666432 3333333 3456788888 7889999988887764 35666653 36666666
Q ss_pred HHHH
Q psy15604 954 LLNR 957 (986)
Q Consensus 954 ~l~~ 957 (986)
.|.+
T Consensus 1052 ~Ly~ 1055 (1233)
T KOG1824|consen 1052 LLYS 1055 (1233)
T ss_pred HHHH
Confidence 6654
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.11 E-value=8.6e-10 Score=101.06 Aligned_cols=118 Identities=35% Similarity=0.427 Sum_probs=107.5
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
.+++.|+++.+++++++++..++..++++|.+++.+.+.....+.+.|+++.+++++.++++.++..++|+|+||+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35688999999999999999999999999999999888888888888999999999999999999999999999999876
Q ss_pred ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhh
Q psy15604 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 690 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls 690 (986)
+....+.+.|+++.+++++...+ ..+++.++++|++|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhh
Confidence 77777888899999999999886 667789999999986
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.11 E-value=7.9e-06 Score=96.13 Aligned_cols=464 Identities=12% Similarity=0.091 Sum_probs=275.2
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
.++.+++++.+++.+.++..--.+ .+++... .... .=++..|.+-+.++++.+|..|+++|+++...+
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL---~~ya~~~-pela---lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~----- 136 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYV---LSTARLQ-PEKA---LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS----- 136 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH---HHHcccC-hHHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----
Confidence 577778888999988877643333 2222211 1111 125677888889999999999999998876542
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQE 237 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 237 (986)
+.+. ++..+.+.+.+ .++.+|..|+.++.++..... +.+.+.|.++.|..+|.+.++.++.+|+.+|..+...++
T Consensus 137 i~e~--l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 137 VLEY--TLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHH--HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 2222 35666677776 789999999999999966422 334566788999999999999999999999999985544
Q ss_pred CchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHh
Q psy15604 238 GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317 (986)
Q Consensus 238 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~L 317 (986)
. .-. ...+.+..|+..+..-++-.|.....+|... .|...... ...+..+...+++.+.. +...+++++..+
T Consensus 212 ~-~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~--~~il~~l~~~Lq~~N~A-VVl~Aik~il~l 283 (746)
T PTZ00429 212 E-KIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKESA--ETLLTRVLPRMSHQNPA-VVMGAIKVVANL 283 (746)
T ss_pred h-hhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHHH--HHHHHHHHHHhcCCCHH-HHHHHHHHHHHh
Confidence 2 211 2245567777777776777777666666443 22111111 13456667777776654 777777888777
Q ss_pred hhCCCChHHHHHh--ccHHHHHHHhCCCCHHHHHHHHHHHhcccccccc--------cccccCCchHHHHHHHHHHHHHh
Q psy15604 318 SVCSSNKPAIVEA--GGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------VSLLFNEIENIQRVAAGLLCELA 387 (986)
Q Consensus 318 s~~~~~~~~i~~~--g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~--------i~ll~~~~~~~~~~a~~~L~~l~ 387 (986)
.... +...+... .....++.+ .+++++++..++..+.-+....+. .-...++...++.....+|..++
T Consensus 284 ~~~~-~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 284 ASRC-SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred cCcC-CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 6432 11211111 122445555 455677777777666555333221 11222444557777888888777
Q ss_pred hChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhc
Q psy15604 388 QDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRL 467 (986)
Q Consensus 388 ~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 467 (986)
........+ .-|.....+.+......+.. ++.+++ .
T Consensus 362 ne~Nv~~IL------~EL~eYa~d~D~ef~r~aIr--AIg~lA---------~--------------------------- 397 (746)
T PTZ00429 362 TPSVAPEIL------KELAEYASGVDMVFVVEVVR--AIASLA---------I--------------------------- 397 (746)
T ss_pred CcccHHHHH------HHHHHHhhcCCHHHHHHHHH--HHHHHH---------H---------------------------
Confidence 544332222 33444444333332222221 111111 0
Q ss_pred CCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhh--c
Q psy15604 468 TEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI--S 545 (986)
Q Consensus 468 ~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL--~ 545 (986)
++ .......+..|++++..... ...+++.++.++.+..... ..+..|+..+ .
T Consensus 398 ---------------k~---~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~-------~il~~L~~~~~~~ 451 (746)
T PTZ00429 398 ---------------KV---DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL-------LMLDTLVTDYGAD 451 (746)
T ss_pred ---------------hC---hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH-------HHHHHHHHhhccc
Confidence 00 00112336677777765443 4456788888886654421 1344555433 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHH
Q psy15604 546 NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKM 624 (986)
Q Consensus 546 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~L 624 (986)
.-.+++.+...+|+|+..+..-++.. ..+..++.-+...++.||.+.+.+...+....++ .+. .+..+
T Consensus 452 ~i~e~~AKaaiiWILGEy~~~I~~a~-----~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~------~l~~v 520 (746)
T PTZ00429 452 EVVEEEAKVSLLWMLGEYCDFIENGK-----DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP------QLNRV 520 (746)
T ss_pred ccccHHHHHHHHHHHHhhHhhHhhHH-----HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH------HHHHH
Confidence 33568889999999999876322211 1233333333446778999999999988877663 222 23344
Q ss_pred HHhh-c-CCCHhHHHHHHHHHHHHhcC
Q psy15604 625 VLLL-G-RNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 625 v~ll-~-~~~~~v~~~a~~aL~~L~~~ 649 (986)
+..+ + +.+++++..|..-.+.|..+
T Consensus 521 L~~~t~~~~d~DVRDRA~~Y~rLLs~~ 547 (746)
T PTZ00429 521 LETVTTHSDDPDVRDRAFAYWRLLSKG 547 (746)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHcCC
Confidence 4333 3 46788988887666655543
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.06 E-value=1.4e-09 Score=99.57 Aligned_cols=113 Identities=37% Similarity=0.434 Sum_probs=104.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCCh
Q psy15604 534 PQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK 612 (986)
Q Consensus 534 ~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 612 (986)
.|+++.+++++++. ++.++..++++|.+++.. ++....+++.|++|.+++++.++++.++..++++|+|++.+.+..+
T Consensus 6 ~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 6 AGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred cCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 38999999999765 689999999999999995 7888889999999999999999999999999999999998887777
Q ss_pred HHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 613 MAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 613 ~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
..+.+.|+++.+++++...+..++..++|+|.+|+
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888999999999999999999999999999987
No 45
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.06 E-value=1.6e-06 Score=92.75 Aligned_cols=551 Identities=13% Similarity=0.062 Sum_probs=311.1
Q ss_pred HHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHc----cC-CHHHHHHHHHHHHHhcccCcch
Q psy15604 81 ELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLN----DE-DQVVVSQAAMMVHQLSKKEASR 155 (986)
Q Consensus 81 ~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~----~~-~~~~~~~a~~~L~~la~~~~~~ 155 (986)
.....|.+.++.....|+..++.++..= +..+..|.|+.-+. .+ ....+++++.++++++...+..
T Consensus 98 ~al~aL~s~epr~~~~Aaql~aaIA~~E---------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe 168 (858)
T COG5215 98 MALRALKSPEPRFCTMAAQLLAAIARME---------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE 168 (858)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhh---------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH
Confidence 3456667777777777888777776521 23455566655543 33 3568999999999999887776
Q ss_pred hHhhhCCchHHHHH-HHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcC----ChHHHHHhhCCCCHhHHHHHHHHHH
Q psy15604 156 HAIMNSPQMVAALV-HAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSG----GIPALVKLLSSPVESVLFYAITTLH 230 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv-~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g----~i~~Lv~lL~~~~~~~~~~a~~~L~ 230 (986)
..+..++.++-.++ ..++++++..+|..|+.+|.+-... -+..+..++ .+...++.-+.++.+++..|..+|.
T Consensus 169 ~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f--v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 169 DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF--VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH--HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 66666655544444 4456767888999999999883222 111111111 2234456667889999999999998
Q ss_pred HHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH----------------hCCCHHHH
Q psy15604 231 NLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIIL----------------ASQGPVEL 294 (986)
Q Consensus 231 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~----------------~~g~v~~L 294 (986)
.+..-+...-+.+.+.-......+.+++.++++...+.+.-..++...-+...... -.+++|.|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 88754433333444444444555667888888888888777666542211111111 12356777
Q ss_pred HHHHhcCC------hHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccc
Q psy15604 295 VRIMRSYD------YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLL 368 (986)
Q Consensus 295 ~~ll~~~~------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll 368 (986)
+++|...+ +-....++..+|...+...++ ..+.++..+... | +
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-------~i~~pVl~FvEq--------------n----------i 375 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-------KIMRPVLGFVEQ--------------N----------I 375 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-------HhHHHHHHHHHH--------------h----------c
Confidence 77776521 111222333333322211111 111112211110 0 0
Q ss_pred cCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhc
Q psy15604 369 FNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEG 448 (986)
Q Consensus 369 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 448 (986)
++++-.-++.++.+++..-.
T Consensus 376 ~~~~w~nreaavmAfGSvm~------------------------------------------------------------ 395 (858)
T COG5215 376 RSESWANREAAVMAFGSVMH------------------------------------------------------------ 395 (858)
T ss_pred cCchhhhHHHHHHHhhhhhc------------------------------------------------------------
Confidence 01111111122222221110
Q ss_pred cCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccch
Q psy15604 449 IEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 528 (986)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 528 (986)
.|....+. .+...++|.+.+.+.++.-.+...++++++.++.+-..
T Consensus 396 --------------------gp~~~~lT------------~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~-- 441 (858)
T COG5215 396 --------------------GPCEDCLT------------KIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM-- 441 (858)
T ss_pred --------------------CccHHHHH------------hhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH--
Confidence 01000000 01134578888888877778888899999888765431
Q ss_pred hhhcccCcHHHHHHhh--cCCCCHHHHHHHHHHHHHhhCC-ccch---hhhhccCChHHHHHhc------CCCCHhHHHH
Q psy15604 529 AIMNSPQMVAALVHAI--SNSNDLETTKGAVGTLHNLSHH-RQGL---LAIFKSGGIPALVKLL------SSPVESVLFY 596 (986)
Q Consensus 529 ~l~~~~~~i~~L~~lL--~~~~~~~~~~~a~~~L~~ls~~-~~~~---~~i~~~~~i~~Lv~lL------~~~~~~v~~~ 596 (986)
++...+.++..+... .-.+.|....++.|...|+..+ .+.. .... ....+.++.-| .....+.+..
T Consensus 442 -~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s 519 (858)
T COG5215 442 -IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVS 519 (858)
T ss_pred -hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 111112222222211 1224678888999999999762 1111 1111 12223333322 2234467788
Q ss_pred HHHHHHHhhcCCCCChHHHHHhCcHHHHHHhh-----------cCC----CHhHHHHHHHHHHHHhcCCcccHHHHHhCC
Q psy15604 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL-----------GRN----NVKFLAIVTDCLQILAYGNQESKLIILASQ 661 (986)
Q Consensus 597 a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll-----------~~~----~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~ 661 (986)
+..+|+.+....++....+. .|......+-+ ..+ -.+++.+.+..|..+.+..+..-..+ +..
T Consensus 520 ~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~ 597 (858)
T COG5215 520 LFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQ 597 (858)
T ss_pred HHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHH
Confidence 88888888877665433322 33322222211 111 25778888888888877543222122 223
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcc-cccc-cc
Q psy15604 662 GPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA-GTKV-DG 739 (986)
Q Consensus 662 ~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~-~~~~-~~ 739 (986)
...-++++|.+.++.....++..++++|+..-+.+....-...+|.|.+-++..+..+...+.+.++.|+.. .++. +.
T Consensus 598 lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y 677 (858)
T COG5215 598 LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY 677 (858)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456778888887667677788888888877544444444456788888888777888888999999999843 3333 44
Q ss_pred hhchHHHHHHHhccC--ChhhHHHHHHHHhhhcc
Q psy15604 740 LESLLQSLVQLLASQ--DINVITCAAGVTVCQVG 771 (986)
Q Consensus 740 ~~~~l~~L~~ll~~~--~~~i~~~a~~~L~ni~~ 771 (986)
.+.+...|++.++++ +.+++-....+.+.|+-
T Consensus 678 ~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 678 ADVLMSSLVQCLSSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred HHHHHHHHHHHhcChhhccccchHHHHHHHHHHH
Confidence 567888899999887 66777777777775543
No 46
>KOG0168|consensus
Probab=99.05 E-value=6.2e-08 Score=108.13 Aligned_cols=431 Identities=12% Similarity=0.064 Sum_probs=270.1
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhhc-cc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccch
Q psy15604 495 IPELIKLLNDE-DQVVVSQAAMMVHQLSKK-EA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGL 570 (986)
Q Consensus 495 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~-~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~ 570 (986)
+..|+.-+..+ |+..|.+++.-|..+... .. ....+.. ..++|.|+.+|+...+.+++..|+++|++|+. .|...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 55666666655 899999998888876432 22 2222222 36899999999999899999999999999999 88999
Q ss_pred hhhhccCChHHHHHh-cCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcC
Q psy15604 571 LAIFKSGGIPALVKL-LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~ 649 (986)
..+++.++||.|+.- +.-.--++.++++.+|-.|....+ ..+.+.|++...+..+.--+..+|+.|.....|+|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999874 455667899999999999987654 4566799999998888777788899999999999986
Q ss_pred C-cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC---CCCc-hhHHhcCcHHHHHHhhCCC----CHHHH
Q psy15604 650 N-QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC---SSNK-PAIVEAGGMQALAMHLGHP----SQRLV 720 (986)
Q Consensus 650 ~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~---~~~~-~~l~~~g~~~~L~~ll~~~----~~~v~ 720 (986)
- ++.-..+++ .++.|..+|...| .+..+.++-++.++... ..++ +.+...|.+.....++.-. +..+.
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3 344444443 6889999999888 45556777788888655 2233 6677788888877777543 23455
Q ss_pred HHHHHHHHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc-------CCcc---
Q psy15604 721 QNCLWTLRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA-------GDRE--- 787 (986)
Q Consensus 721 ~~al~~L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~-------~~~~--- 787 (986)
....+.|.-+++... ......++...|..++..+...--..-...| ...+++.+.++.+ .+.+
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l----~r~Pnel~e~~sl~~eLlp~~p~e~i~ 477 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELL----SRSPNELYELTSLIIELLPCLPVEGIF 477 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccccccccc----ccCcHHHHHHHHHHheeecCCccccee
Confidence 556677777775532 2233347777888877654331111111122 2556777766655 1110
Q ss_pred ------------cccccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCC-----ccc-
Q psy15604 788 ------------EITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGF-----TQD- 849 (986)
Q Consensus 788 ------------~~~e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----~~~- 849 (986)
...|..|.- --+.|..++.+.-+.+ .++.+.+..+..++.. .+.
T Consensus 478 ~~~~~~~~~~~n~~~~~~~~~---------~d~~~s~~~~~~~~~r---------i~~q~~~~~~t~~~~~dkl~~~~r~ 539 (1051)
T KOG0168|consen 478 AVDCSLIYEIVNLADELLWQW---------RDDRGSWHTYTNIDSR---------IIEQINEDTGTSRKQQDKLNGSARE 539 (1051)
T ss_pred ehhhhhhcccccccccccccC---------ccccccccccchhhhh---------hhhhhccCcccchhhhhhcCCchhh
Confidence 112222220 0001111111111111 1111111111110000 000
Q ss_pred chhhhccCchHHHHH-------HHHhcCCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHH
Q psy15604 850 QVTVCQVGGVEALVQ-------TIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLV 922 (986)
Q Consensus 850 ~~~~~~~~g~~~L~~-------~~l~~~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~ 922 (986)
+....+++-.+.+.+ -...++-|+.|+-++..+|-.++.... ++.++..+.....-.++..+|... +..++
T Consensus 540 ~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~-seli~slLk~~~vSS~lAG~lssk-D~~vl 617 (1051)
T KOG0168|consen 540 GLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN-SELIGSLLKNTNVSSHLAGMLSSK-DLTVL 617 (1051)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC-HHHHHHHHhcchHHHHHHhhhhcC-CCeeE
Confidence 011122222222221 134467899999999999999877653 577777777777778899999986 77777
Q ss_pred HHHHHHHHhhhhc-cc-cchhhhhcCcHHHHHHHHH
Q psy15604 923 KAVIGLIRNLALC-QA-NHAPLREYGAIHLLVILLN 956 (986)
Q Consensus 923 ~~~~~~l~nl~~~-~~-~~~~~~~~~~~~~l~~~l~ 956 (986)
.-++++.-=|... |. =-..+.+-|++..+-++..
T Consensus 618 VgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 618 VGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred eehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 7777665544321 11 1334455678777777643
No 47
>KOG2759|consensus
Probab=99.00 E-value=2.5e-07 Score=96.25 Aligned_cols=349 Identities=15% Similarity=0.196 Sum_probs=230.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHh-------cCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK-------SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 164 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
.+..++++++....++..+..+..+..+-+.+..+..++. .-..++.+.+|...+.-+.......+..++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 4678888888766677778888888888776555554443 234788899999999888888888888888432
Q ss_pred CCchHHHHHcC-cHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHH-hcCChHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAG-GLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIM-RSYDYEKLLWCTSRV 313 (986)
Q Consensus 237 ~~~~~~i~~~g-~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll-~~~~~~~~~~~a~~a 313 (986)
..+....+.. ....|-..+.+ .+++....++.+|..+.. .++.|..++..+|+..++..+ .+...-.+++....+
T Consensus 146 -~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 146 -NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred -cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 2222111111 12233344444 667788889999999988 566999999999999999999 444445588999999
Q ss_pred HHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhCh---
Q psy15604 314 LKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDK--- 390 (986)
Q Consensus 314 L~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~--- 390 (986)
+|.|.-.+.-.+.+...+.++.|..++++ +..+.+-+.++.++.|+....
T Consensus 224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~---------------------------~~KEKV~Rivlai~~Nll~k~~~~ 276 (442)
T KOG2759|consen 224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKE---------------------------STKEKVTRIVLAIFRNLLDKGPDR 276 (442)
T ss_pred HHHhhcCHHHHHHHhhccHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHhccCchh
Confidence 99999888777778888999999998876 344567777777788876332
Q ss_pred ----hhHHHHHhcCCcHHHHHHhccCchhHHHHH--HHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHH
Q psy15604 391 ----EGAETIEAEGATAPLTDLLHSRNEGVEILI--QGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAV 464 (986)
Q Consensus 391 ----~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~--~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 464 (986)
+....|+..++.+.+-.+....-++.+... ..+.
T Consensus 277 ~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~---------------------------------------- 316 (442)
T KOG2759|consen 277 ETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLT---------------------------------------- 316 (442)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHH----------------------------------------
Confidence 344556666666666665554332222111 1111
Q ss_pred HhcCCCcHHHHHHHHHHhcCCc-hhhhhcCCHHHHHHHhcCC---CHHHHHHHHHHHHHhhhccccchhhhc-ccCcHHH
Q psy15604 465 QRLTEPSQMLKHAVVNLINYQD-DADLATRAIPELIKLLNDE---DQVVVSQAAMMVHQLSKKEASRHAIMN-SPQMVAA 539 (986)
Q Consensus 465 ~~l~~~~~~~~~a~~~l~~~~~-~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~l~~-~~~~i~~ 539 (986)
..+...+..|..+.. ..++..|.+. +++ +...-.. +...+-+ .-.+++.
T Consensus 317 -------e~L~~svq~LsSFDeY~sEl~sG~L~------WSP~Hk~e~FW~e-------------Na~rlnennyellki 370 (442)
T KOG2759|consen 317 -------EKLKNSVQDLSSFDEYKSELRSGRLE------WSPVHKSEKFWRE-------------NADRLNENNYELLKI 370 (442)
T ss_pred -------HHHHHHHHhhccHHHHHHHHHhCCcC------CCccccccchHHH-------------hHHHHhhccHHHHHH
Confidence 011112222222110 0111111111 111 0000000 0011111 1256888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcC
Q psy15604 540 LVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH 607 (986)
Q Consensus 540 L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 607 (986)
|+++|+.+++|.+..-|+.=++.... .|+++..+-+.||=+.+.+++++++++|+..|+.++..+..+
T Consensus 371 L~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 371 LIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99999888888888888888888877 889999999999999999999999999999999999888754
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.94 E-value=7.1e-07 Score=96.98 Aligned_cols=348 Identities=14% Similarity=0.124 Sum_probs=224.7
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCcc-chhhhhc-----cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCC
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ-GLLAIFK-----SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 608 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~-----~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 608 (986)
..+..++.+++....+++.+.....+..+..... ....+.+ .....+++.+|..++.-+...++..|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 5677788888777778888888888888877433 3333333 345678888999888899999999999998665
Q ss_pred CCChHHHHHhCcHHHHHHhhcCC-CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCC-hhHHHHHHHHHH
Q psy15604 609 EGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD-YEKLLWCTSRVL 686 (986)
Q Consensus 609 ~~~~~~v~~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~L 686 (986)
..........-....+...++++ +...+..+..+|..|.+. ++.|..+.+.++++.|+.+|+... .-.++..++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 43222111111233455566554 467788888999999887 688888988899999999998754 457888999999
Q ss_pred HHhhcCCCCchhHHhcCcHHHHHHhhCCC-CHHHHHHHHHHHHHhhccccc---------ccchhchHHHHHHHhcc--C
Q psy15604 687 KVLSVCSSNKPAIVEAGGMQALAMHLGHP-SQRLVQNCLWTLRNLSDAGTK---------VDGLESLLQSLVQLLAS--Q 754 (986)
Q Consensus 687 ~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~-~~~v~~~al~~L~nLs~~~~~---------~~~~~~~l~~L~~ll~~--~ 754 (986)
|.|+..+.........+.++.|+++++.. .+.+.+-++.+++|+.+.... .....|+++.+-.+... .
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 99999877556666788999999999764 588999999999999964321 11223665555444433 3
Q ss_pred ChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhhHHHHHhcCCCCC-cccCCCCcccccccccchh
Q psy15604 755 DINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDSGIHSG-VNTNAPSLTGKEEDMDGDQ 833 (986)
Q Consensus 755 ~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~-L~~~~~~~~~~~~~l~~l~ 833 (986)
|+++...--..- ..-++.+ ..++.+ +.=..=+..|.+.. -...+ +..
T Consensus 292 DedL~edl~~L~----e~L~~~~---k~ltsf--------------D~Y~~El~sg~L~WSp~H~s----------e~F- 339 (429)
T cd00256 292 DEDLTDDLKFLT----EELKNSV---QDLSSF--------------DEYKSELRSGRLHWSPVHKS----------EKF- 339 (429)
T ss_pred cHHHHHHHHHHH----HHHHHHH---HHcCCH--------------HHHHHHHhcCCccCCCCCCC----------chH-
Confidence 777664322111 1111111 122211 11111123343322 00000 000
Q ss_pred hhhhhhcccCCCCcccchhhhccC--chHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHH
Q psy15604 834 LMFEMDQGFGQGFTQDQVTVCQVG--GVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVN 911 (986)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ 911 (986)
| .+|...+++.+ -+..|. .++..+++|.+..-|+.=+..+...+|. .+..+.+-+|=..+++
T Consensus 340 --------W----~EN~~kf~~~~~~llk~L~-~iL~~s~d~~~laVAc~Dige~vr~~P~---gr~i~~~lg~K~~vM~ 403 (429)
T cd00256 340 --------W----RENADRLNEKNYELLKILI-HLLETSVDPIILAVACHDIGEYVRHYPR---GKDVVEQLGGKQRVMR 403 (429)
T ss_pred --------H----HHHHHHHHhcchHHHHHHH-HHHhcCCCcceeehhhhhHHHHHHHCcc---HHHHHHHcCcHHHHHH
Confidence 0 11222233222 223333 2446678899998888888887776653 3567777888888999
Q ss_pred hhCCCCCchHHHHHHHHHHhh
Q psy15604 912 LLNPPSRWPLVKAVIGLIRNL 932 (986)
Q Consensus 912 ll~~~~~~~~~~~~~~~l~nl 932 (986)
|+.++ |+.|.+.|+.++--|
T Consensus 404 Lm~h~-d~~Vr~eAL~avQkl 423 (429)
T cd00256 404 LLNHE-DPNVRYEALLAVQKL 423 (429)
T ss_pred HhcCC-CHHHHHHHHHHHHHH
Confidence 99998 888999998877655
No 49
>KOG0946|consensus
Probab=98.89 E-value=1.1e-05 Score=89.99 Aligned_cols=218 Identities=15% Similarity=0.202 Sum_probs=177.3
Q ss_pred CcHHHHHHHhc-CCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHhcccCc
Q psy15604 77 RAIPELIKLLN-DEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE--DQVVVSQAAMMVHQLSKKEA 153 (986)
Q Consensus 77 g~i~~l~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~la~~~~ 153 (986)
..|+.|++-+. +.-.++++.|+.+|..+++ ..+..+.+.+++.|+..|+.+ |+++...++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr------kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR------KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH------HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 57899998884 5568999999999988876 234456777889999999864 78999999999999886653
Q ss_pred -------c----------hhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ccchHHHH-hcCChHHHHHh
Q psy15604 154 -------S----------RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH--RQGLLAIF-KSGGIPALVKL 213 (986)
Q Consensus 154 -------~----------~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~-~~g~i~~Lv~l 213 (986)
. .+.+....+.|..|+..+.. .|-.+|..+...+.++-.+ ++-+..+. ..-+|..|+.+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 1 23445555567778887776 6889999999999999776 34555444 44899999999
Q ss_pred hCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccC----CHHHHHHHHHHHHHHhccChhhHHHHHhCC
Q psy15604 214 LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN----NVKFLAIVTDCLQILAYGNQESKLIILASQ 289 (986)
Q Consensus 214 L~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~a~~aL~~La~~~~~~~~~~~~~g 289 (986)
|.+..+-++-.++-.|..+..+++..++.+.-.+++..|+.++..+ ..-+...|...|.+|-..+..++..|.+.+
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 9999999999999999999999998999888899999999999652 234677788888999888888999999999
Q ss_pred CHHHHHHHHhcC
Q psy15604 290 GPVELVRIMRSY 301 (986)
Q Consensus 290 ~v~~L~~ll~~~ 301 (986)
-+|.|.+++.-+
T Consensus 255 ~i~rL~klL~~f 266 (970)
T KOG0946|consen 255 YIPRLLKLLSVF 266 (970)
T ss_pred cHHHHHhhcCcc
Confidence 999999988754
No 50
>KOG0168|consensus
Probab=98.86 E-value=1.3e-06 Score=97.89 Aligned_cols=449 Identities=14% Similarity=0.115 Sum_probs=257.9
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHhc--ccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchH
Q psy15604 124 PELIKLLNDE-DQVVVSQAAMMVHQLS--KKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLL 199 (986)
Q Consensus 124 ~~L~~ll~~~-~~~~~~~a~~~L~~la--~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~ 199 (986)
..|+.-|... |+..+..++.-|+.+- .+++.-..+.-. .++|.|+.+|+...+.++...|+++|.+|+.- |....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 3344444444 7777777766555533 222222222211 26899999999888999999999999999998 99999
Q ss_pred HHHhcCChHHHHHhhCC-CCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc--
Q psy15604 200 AIFKSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY-- 276 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~-- 276 (986)
.+++.++||.|+.-|.. .--++-+.++.+|..+++.++ +++.++|++...+.+|+-=+...|..|..+..|.+.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999977754 467899999999999996554 678889999999999976666677777777777765
Q ss_pred cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCC----hHHHHHhccHHHHHHHhCCCCHHHHHHHH
Q psy15604 277 GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN----KPAIVEAGGMQALAMHLGHPSQRLVQNCL 352 (986)
Q Consensus 277 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~----~~~i~~~g~l~~L~~ll~~~~~~~~~~~~ 352 (986)
...+..-. ..++|.|..++++.+.. ..+.+.-++..++..... -+.+...|.+....+++.-...
T Consensus 326 ~sd~f~~v---~ealPlL~~lLs~~D~k-~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t------- 394 (1051)
T KOG0168|consen 326 RSDEFHFV---MEALPLLTPLLSYQDKK-PIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPT------- 394 (1051)
T ss_pred CCccchHH---HHHHHHHHHHHhhccch-hHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcc-------
Confidence 22222222 24689999999988765 555566666666643222 2446666777777776643211
Q ss_pred HHHhcccccccccccccCCchHHHHHHHHHHHHHhhC-hhhHHHHHhcCCcHHHHHHhccCchhHH-----------HHH
Q psy15604 353 WTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQD-KEGAETIEAEGATAPLTDLLHSRNEGVE-----------ILI 420 (986)
Q Consensus 353 ~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~l~~Lv~ll~~~~~~~~-----------~~~ 420 (986)
.-+..+.....+.|..++.+ +.....+.+.++...|..++........ ...
T Consensus 395 -----------------~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel 457 (1051)
T KOG0168|consen 395 -----------------ILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNEL 457 (1051)
T ss_pred -----------------cccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHH
Confidence 11223444566677777766 6778888888888888888764321100 000
Q ss_pred HHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhh---cCCHHH
Q psy15604 421 QGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLA---TRAIPE 497 (986)
Q Consensus 421 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~---~~~i~~ 497 (986)
...+.++ . ..|++..++. ++ .-...+.+-.....+++ +.-|.++...- ......
T Consensus 458 ~e~~sl~--~-------eLlp~~p~e~---i~-----~~~~~~~~~~~n~~~~~------~~~~~d~~~s~~~~~~~~~r 514 (1051)
T KOG0168|consen 458 YELTSLI--I-------ELLPCLPVEG---IF-----AVDCSLIYEIVNLADEL------LWQWRDDRGSWHTYTNIDSR 514 (1051)
T ss_pred HHHHHHH--h-------eeecCCcccc---ee-----ehhhhhhcccccccccc------cccCccccccccccchhhhh
Confidence 0011111 0 0011000000 00 00000000000000000 00011111000 011111
Q ss_pred HHHHhcCCC---HHHHHH-HHHHHHHhhhcc-ccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--Cccch
Q psy15604 498 LIKLLNDED---QVVVSQ-AAMMVHQLSKKE-ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGL 570 (986)
Q Consensus 498 L~~ll~~~~---~~~~~~-a~~~L~~l~~~~-~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~ 570 (986)
++...+.+. ..++.. ....=..+..+. .-.+.++. .++|.|+++..++-++++++.++.+|..+.+ +.+-.
T Consensus 515 i~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~--~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli 592 (1051)
T KOG0168|consen 515 IIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK--DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELI 592 (1051)
T ss_pred hhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH--HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHH
Confidence 111111110 111100 000000111111 12333333 5788999999888899999999999999977 44444
Q ss_pred hhhhccCChH-HHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhc
Q psy15604 571 LAIFKSGGIP-ALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLG 629 (986)
Q Consensus 571 ~~i~~~~~i~-~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~ 629 (986)
..+.+...+. .+-.+|.+.+..+..-|+...--|+..-++ .-..+++.|++..+-++..
T Consensus 593 ~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 593 GSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 5555544443 555677888887777777776666665444 5556666787777666655
No 51
>KOG1241|consensus
Probab=98.83 E-value=1.7e-05 Score=88.50 Aligned_cols=569 Identities=13% Similarity=0.098 Sum_probs=306.8
Q ss_pred HccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-CCHHHHHHHHHHHHhhccC--ccchHHHHhc--
Q psy15604 130 LNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHH--RQGLLAIFKS-- 204 (986)
Q Consensus 130 l~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~-- 204 (986)
.-++|+.++..|-.-|.+++..+- .+++..|...|.+. .+...|..|-..|.|--.. ++.+....+-
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~nf--------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQNF--------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhccH--------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 446777888888777777765431 12445555555443 4566777777778775433 3332222110
Q ss_pred -------CCh-HHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHH----HHHHhccCCH-HHHHHHHHHH
Q psy15604 205 -------GGI-PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQK----MVLLLGRNNV-KFLAIVTDCL 271 (986)
Q Consensus 205 -------g~i-~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~----L~~ll~~~~~-~~~~~a~~aL 271 (986)
.-| ..+.+-|.++.|.....|..+++.++.. + +- .+..|. |+.......+ .++..++.++
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~-E-----lP-~n~wp~li~~lv~nv~~~~~~~~k~~sleal 154 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI-E-----LP-QNQWPELIVTLVSNVGEEQASMVKESSLEAL 154 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh-h-----Cc-hhhCHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 011 1233445555555555666666655521 1 00 233344 4444444333 4778889999
Q ss_pred HHHhcc-ChhhHHHHHhCCCHHHHHHHHhcC-ChHHHHHHHHHHHHHhhhCCC-Ch-HHHHHhccHHHHHHHhCCCCHHH
Q psy15604 272 QILAYG-NQESKLIILASQGPVELVRIMRSY-DYEKLLWCTSRVLKVLSVCSS-NK-PAIVEAGGMQALAMHLGHPSQRL 347 (986)
Q Consensus 272 ~~La~~-~~~~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~a~~aL~~Ls~~~~-~~-~~i~~~g~l~~L~~ll~~~~~~~ 347 (986)
+-++.+ +|+ ...-..+..+-.++.-++.. +...+|-+++.+|.+--.... |. ..+-+.-.++...+.-.+++.++
T Consensus 155 Gyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i 233 (859)
T KOG1241|consen 155 GYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEI 233 (859)
T ss_pred HHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHH
Confidence 999863 232 11111223344444444433 335688888888876542221 21 22233334555556666677777
Q ss_pred HHHHHHHHhcccc-ccc-------------ccccccCCchHHHHHHHHHHHHHhhCh-hhH---HHHHhcC---------
Q psy15604 348 VQNCLWTLRNLSD-AGT-------------KVSLLFNEIENIQRVAAGLLCELAQDK-EGA---ETIEAEG--------- 400 (986)
Q Consensus 348 ~~~~~~~L~~ls~-~~~-------------~i~ll~~~~~~~~~~a~~~L~~l~~~~-~~~---~~l~~~g--------- 400 (986)
+.++..+|-.+-. +.. .+.-++++++++...+.+..++++..+ +.. ....+.|
T Consensus 234 ~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa 313 (859)
T KOG1241|consen 234 QVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFA 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH
Confidence 7777666655422 111 155567999999999999999888544 321 2233333
Q ss_pred ------CcHHHHHHhccCch-------hHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhc
Q psy15604 401 ------ATAPLTDLLHSRNE-------GVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRL 467 (986)
Q Consensus 401 ------~l~~Lv~ll~~~~~-------~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 467 (986)
.+|.|+.+|...++ ..-+++..++.++.
T Consensus 314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A--------------------------------------- 354 (859)
T KOG1241|consen 314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFA--------------------------------------- 354 (859)
T ss_pred HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHH---------------------------------------
Confidence 33444444432110 11112222222210
Q ss_pred CCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc--chhhhcccCcHHHHHHhhc
Q psy15604 468 TEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS--RHAIMNSPQMVAALVHAIS 545 (986)
Q Consensus 468 ~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~l~~~~~~i~~L~~lL~ 545 (986)
.++ . .++....+|-+-.-++++|.+-+..|+.+++..-..+.. ...++. +++|.++.++.
T Consensus 355 ------------~~~---~-D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--qalp~ii~lm~ 416 (859)
T KOG1241|consen 355 ------------QCV---G-DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI--QALPSIINLMS 416 (859)
T ss_pred ------------HHh---c-ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh--hhhHHHHHHhc
Confidence 001 0 112234455555688899999999999999988655543 445553 78999999987
Q ss_pred CCCCHHHHHHHHHHHHHhhC-Cccc-hhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC---Ch--HHHHH-
Q psy15604 546 NSNDLETTKGAVGTLHNLSH-HRQG-LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG---SK--MAVRL- 617 (986)
Q Consensus 546 ~~~~~~~~~~a~~~L~~ls~-~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~--~~v~~- 617 (986)
++..-++..++|+|+.++. .++. -....-.+.++.++.=|+ +.|.+-.+++|++.+|+....+ .. .....
T Consensus 417 -D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~ 494 (859)
T KOG1241|consen 417 -DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATP 494 (859)
T ss_pred -CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccch
Confidence 4477788999999999987 3321 122222334444444444 3688999999999999943211 00 00110
Q ss_pred --hCcHHHHHHhhcC---CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCC---hHHHHHHHh-----cCC---hhHHHHH
Q psy15604 618 --AGGLQKMVLLLGR---NNVKFLAIVTDCLQILAYGNQESKLIILASQG---PVELVRIMR-----SYD---YEKLLWC 681 (986)
Q Consensus 618 --~g~v~~Lv~ll~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~---~~~L~~ll~-----~~~---~~~~~~~ 681 (986)
...+..|++.-.. +...++..+-.+|..+....+..-..++..-. ...|-+.++ ..+ ..+++..
T Consensus 495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~ 574 (859)
T KOG1241|consen 495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSL 574 (859)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence 1122333333222 24567888889999998876554333322111 122222232 111 1233333
Q ss_pred HHHHHHHhhcC-CCCchhHHhcCcHHHHHHhhCC-CCHHHHHHHHHHHHHhhccc-cc-ccchhchHHHHHHHhc-cCCh
Q psy15604 682 TSRVLKVLSVC-SSNKPAIVEAGGMQALAMHLGH-PSQRLVQNCLWTLRNLSDAG-TK-VDGLESLLQSLVQLLA-SQDI 756 (986)
Q Consensus 682 ~~~~L~~Ls~~-~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~al~~L~nLs~~~-~~-~~~~~~~l~~L~~ll~-~~~~ 756 (986)
.|..|..+-.. .+....+.+ ..+..+.+.+.+ .+..+...+..+++.+...- ++ ...+..+.|.|..-|+ ..+.
T Consensus 575 Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 575 LCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHH
Confidence 44444443211 222233333 467788888887 45677788888888776332 22 2234566666666663 3455
Q ss_pred hhHHHHHHHHhhhccCcH
Q psy15604 757 NVITCAAGVTVCQVGGVE 774 (986)
Q Consensus 757 ~i~~~a~~~L~ni~~g~~ 774 (986)
.+-..|.+.++.++..-+
T Consensus 654 qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALE 671 (859)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666667777665444333
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.76 E-value=1e-07 Score=102.59 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=158.5
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHhhccC-ccchHHHHh------cCChHHHHHhhCCCCHhHHHHHHHHHHHHhcC
Q psy15604 164 MVAALVHAISNS-NDLETTKGAVGTLHNLSHH-RQGLLAIFK------SGGIPALVKLLSSPVESVLFYAITTLHNLLLH 235 (986)
Q Consensus 164 ~i~~Lv~lL~~~-~~~~~~~~a~~~L~~ls~~-~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 235 (986)
....++++|+.. .+.++.+..+..+..+... +...+.+.. .....++++++..+|..++..++..|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 456777888776 7899999999999999888 555555544 23678999999999999999999999999966
Q ss_pred CCCchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHH------hcCChHH
Q psy15604 236 QEGSKMAVRLAGGLQKMVLLLGR----NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIM------RSYDYEK 305 (986)
Q Consensus 236 ~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll------~~~~~~~ 305 (986)
.+....... .+.++.+++.+.+ ++..++..+..+|.+|.. .++.|..+.+.++++.+..++ .+...-.
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 554433322 5677888888865 334567888999999987 788999999999999999999 4445566
Q ss_pred HHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHH
Q psy15604 306 LLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCE 385 (986)
Q Consensus 306 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~ 385 (986)
+.+.++-++|.|+.++.....+...+.++.|..++.. +..+.+.+.+..+|.|
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~---------------------------~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD---------------------------SIKEKVVRVSLAILRN 266 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-----------------------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh---------------------------cccchHHHHHHHHHHH
Confidence 8999999999999988888889999999999888865 4556778888888888
Q ss_pred HhhChh--hHHHHHhcCCcHHHHHHhccC
Q psy15604 386 LAQDKE--GAETIEAEGATAPLTDLLHSR 412 (986)
Q Consensus 386 l~~~~~--~~~~l~~~g~l~~Lv~ll~~~ 412 (986)
+..... +...|+..|+++.+-.+....
T Consensus 267 l~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 267 LLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp TTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 875553 888888888888887777653
No 53
>KOG1062|consensus
Probab=98.72 E-value=0.00019 Score=80.97 Aligned_cols=435 Identities=17% Similarity=0.174 Sum_probs=243.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIF 202 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~ 202 (986)
..|.+=|++.+.-+...|+.+|++++..+-.|+ ..+.+.++|+. .++-+|..|+.+..++-.- |+-.+.
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~Emard-------lapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~-- 179 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARD-------LAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEH-- 179 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHH-------hhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHH--
Confidence 335556678888899999999999998764443 34666777887 7999999999999998776 444333
Q ss_pred hcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc---------------CCHHHHHHH
Q psy15604 203 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR---------------NNVKFLAIV 267 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~---------------~~~~~~~~a 267 (986)
.++....+|.+.+..+....+..+..+|..+++.-..+.+ .++.++..|+. .+|-+|...
T Consensus 180 ---f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 180 ---FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ---hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 3567778888888888888888889999766544444443 56666666632 223344444
Q ss_pred HHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHH
Q psy15604 268 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 347 (986)
Q Consensus 268 ~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~ 347 (986)
.+.|.-|..++++..+.|- ..|-+.....+. ..| -...+
T Consensus 255 LrlLriLGq~d~daSd~M~-----DiLaqvatntds-----------------skN-------------------~GnAI 293 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMN-----DILAQVATNTDS-----------------SKN-------------------AGNAI 293 (866)
T ss_pred HHHHHHhcCCCccHHHHHH-----HHHHHHHhcccc-----------------ccc-------------------chhHH
Confidence 4444444444433333221 111111111100 000 01123
Q ss_pred HHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChh-hHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHH
Q psy15604 348 VQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKE-GAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKI 426 (986)
Q Consensus 348 ~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al 426 (986)
.++|..++..+ ..+..++..|+.+|+.+-.+++ +-+.+ ++..|..........++..
T Consensus 294 LYE~V~TI~~I-----------~~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrH------- 351 (866)
T KOG1062|consen 294 LYECVRTIMDI-----------RSNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRH------- 351 (866)
T ss_pred HHHHHHHHHhc-----------cCCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHH-------
Confidence 33444444333 4456678888888888765543 33332 4555555554443322110
Q ss_pred HhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCC
Q psy15604 427 FKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDED 506 (986)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~ 506 (986)
=..++..|+++|
T Consensus 352 --------------------------------------------------------------------r~tIleCL~DpD 363 (866)
T KOG1062|consen 352 --------------------------------------------------------------------RSTILECLKDPD 363 (866)
T ss_pred --------------------------------------------------------------------HHHHHHHhcCCc
Confidence 134567789999
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--CccchhhhhccCChHHHHH
Q psy15604 507 QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGLLAIFKSGGIPALVK 584 (986)
Q Consensus 507 ~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~Lv~ 584 (986)
..++.+|+..+..+......+ .+++.|+.+|... +++.+..++..+..++. .++.+.. |..+.+
T Consensus 364 ~SIkrralELs~~lvn~~Nv~-------~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~------idtml~ 429 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVR-------VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWH------IDTMLK 429 (866)
T ss_pred HHHHHHHHHHHHHHhccccHH-------HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHH
Confidence 999999999998887665432 4567788888776 88999999988888887 4444432 344444
Q ss_pred hcCCCCHhHHHHHHHHHHHhhcCC-CC-ChHHHHH-hCcHHHHHHhhcCCCHhHHHHHHHHHHHHh----cC-CcccHHH
Q psy15604 585 LLSSPVESVLFYAITTLHNLLLHQ-EG-SKMAVRL-AGGLQKMVLLLGRNNVKFLAIVTDCLQILA----YG-NQESKLI 656 (986)
Q Consensus 585 lL~~~~~~v~~~a~~aL~nl~~~~-~~-~~~~v~~-~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~----~~-~~~~~~~ 656 (986)
.+...-.-|+..+...+..+.... .+ ....+.. ...+.... ++..+.+.++..+.||+..-. .+ +.+....
T Consensus 430 Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~ 508 (866)
T KOG1062|consen 430 VLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT-LLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIK 508 (866)
T ss_pred HHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCc
Confidence 444433333333333333333222 11 1111110 00111111 223356677899999998654 11 1222223
Q ss_pred HHhCCChHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHH-HHhhCCCCHHHHHHHH
Q psy15604 657 ILASQGPVELVRIMRSYD-YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQAL-AMHLGHPSQRLVQNCL 724 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L-~~ll~~~~~~v~~~al 724 (986)
+.+...+..+.+++.++. ...+...+..+|.-|+..-... ..-++.| ..+..+-+..++..+.
T Consensus 509 vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-----~~ri~~lI~~~~~s~~~elQQRa~ 573 (866)
T KOG1062|consen 509 VTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-----SERIKQLISSYKSSLDTELQQRAV 573 (866)
T ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-----HHHHHHHHHHhcccccHHHHHHHH
Confidence 333445666667666542 2444445555666665532211 0112222 2334455666776663
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.68 E-value=0.0011 Score=71.76 Aligned_cols=347 Identities=15% Similarity=0.083 Sum_probs=181.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHH----hcCChHHHHHHHHHHHHHhhhCCCChHHH
Q psy15604 252 MVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIM----RSYDYEKLLWCTSRVLKVLSVCSSNKPAI 327 (986)
Q Consensus 252 L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll----~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 327 (986)
.++.|++..|+.-..++.++..+|.-. ...+.-|-|...+ ....+...+..++.++.+......-...+
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 345556666777777777777776410 1112223333322 23334445555666665554433222222
Q ss_pred HHhcc--HHHHHHHh-CCCCHHHHHHHHHHHhc-cccc-------ccc-------cccccCCchHHHHHHHHHHHHHhh-
Q psy15604 328 VEAGG--MQALAMHL-GHPSQRLVQNCLWTLRN-LSDA-------GTK-------VSLLFNEIENIQRVAAGLLCELAQ- 388 (986)
Q Consensus 328 ~~~g~--l~~L~~ll-~~~~~~~~~~~~~~L~~-ls~~-------~~~-------i~ll~~~~~~~~~~a~~~L~~l~~- 388 (986)
..... .......+ ..++..++..++.+|.+ +-.. +.. +..-.+++.++|..+.++|..+..
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 22221 22222223 33456777788888776 2111 111 334447889999999999998752
Q ss_pred ChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcC
Q psy15604 389 DKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLT 468 (986)
Q Consensus 389 ~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 468 (986)
+=+.-+...+.-......+.+++.++.+...+ ...| +.+|++..+...+. .++ +.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qa---vEfW----------sticeEeid~~~e~--~~~-pe--------- 306 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQA---VEFW----------STICEEEIDGEMED--KYL-PE--------- 306 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH---HHHH----------HHHHHHHhhhHHHH--hhc-cc---------
Confidence 22333344455455566677888887764433 2445 22332211110000 000 00
Q ss_pred CCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHH
Q psy15604 469 EPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDE-------DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV 541 (986)
Q Consensus 469 ~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~ 541 (986)
.|.+.-..+ .....+.+|.|+++|... |..+-..|..+|.-.+....+ .+++ .++..+-
T Consensus 307 ~p~qn~~fa----------~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~--pVl~FvE 372 (858)
T COG5215 307 VPAQNHGFA----------RAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMR--PVLGFVE 372 (858)
T ss_pred CchhhcchH----------HHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHH--HHHHHHH
Confidence 010000000 001134589999988652 344555566666555443321 1111 1222222
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhCCc--cchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhC
Q psy15604 542 HAISNSNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG 619 (986)
Q Consensus 542 ~lL~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g 619 (986)
.-+++ ++-.-++.++.+++.+-..+ .....+ -..++|.+..++.++.--++..++|+++.++.+-+ ..+-..|
T Consensus 373 qni~~-~~w~nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~ 447 (858)
T COG5215 373 QNIRS-ESWANREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCG 447 (858)
T ss_pred HhccC-chhhhHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccc
Confidence 22333 35666788888888876632 233333 26788999999888778899999999999986532 2222234
Q ss_pred cHHHHHHhhc---CCCHhHHHHHHHHHHHHhcC
Q psy15604 620 GLQKMVLLLG---RNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 620 ~v~~Lv~ll~---~~~~~v~~~a~~aL~~L~~~ 649 (986)
-++..+...- .++|.+...++|...||+..
T Consensus 448 Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 448 HLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred cccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 3444333221 25778889999999999874
No 55
>KOG0213|consensus
Probab=98.68 E-value=0.0015 Score=73.01 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=160.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc--chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS--RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA 572 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 572 (986)
+..++..|++..+.++.+|+..+..++.--.. -..++..-|+ .|.+.|.. +.|++.-..++++..+...-. ...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylge-eypEvLgsILgAikaI~nvig-m~k 876 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGE-EYPEVLGSILGAIKAIVNVIG-MTK 876 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCc-ccHHHHHHHHHHHHHHHHhcc-ccc
Confidence 44566678899999999999888877543221 1222222232 35566644 378887777777777655211 111
Q ss_pred hh--ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC---ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 573 IF--KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG---SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 573 i~--~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
+. -.+.+|.|...|++..++++++++..++.++...++ .|+..+ +---|+++|++.+.++++.+...+..++
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11 257899999999999999999999999999977665 344433 2234788888899999999999998887
Q ss_pred cCCcccHHHHHhCCChHHHHH-HHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 648 YGNQESKLIILASQGPVELVR-IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
.- -|+..++. +|.+-..++.+..+|..+..--....+ .. -.++++|+.--+.+...|+.-.+.+
T Consensus 954 ka-----------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c-~p---FtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 954 KA-----------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-GP---FTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred Hh-----------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc-Cc---hhhhHHHHhhccCchhHHHHhHHHH
Confidence 63 23434333 343333344444443332221111000 00 1256666666667888899888888
Q ss_pred HHHhhcccccccc--hhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 727 LRNLSDAGTKVDG--LESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 727 L~nLs~~~~~~~~--~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
+..+-....++.. ...+.|.|.+-+.+.|.--|.-|+.++..+
T Consensus 1019 lsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 8877754443322 236667777888888888888888887643
No 56
>KOG2160|consensus
Probab=98.66 E-value=9.6e-07 Score=91.04 Aligned_cols=177 Identities=16% Similarity=0.172 Sum_probs=148.3
Q ss_pred hHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc-CcchhHhhhCCchHHHHHHHHhcCCC
Q psy15604 99 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSND 177 (986)
Q Consensus 99 ~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~ 177 (986)
.+|..|..+.++-++...++..|+...++.++.+.+.++|..|+.+++..+.+ |..++.+.+.++ .+.|+..|.++.+
T Consensus 102 ~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~-L~~Ll~~ls~~~~ 180 (342)
T KOG2160|consen 102 DALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGA-LSKLLKILSSDDP 180 (342)
T ss_pred HHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc-HHHHHHHHccCCC
Confidence 56778888888888899999999999999999999999999999999998865 688999999985 6999999998778
Q ss_pred HHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCC--CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHH
Q psy15604 178 LETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSP--VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL 254 (986)
Q Consensus 178 ~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ 254 (986)
.+++..|+.+++.+-++ +.+...+...+|...|.+.++++ +...+..++..+..+...+......+...|.-..+..
T Consensus 181 ~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~ 260 (342)
T KOG2160|consen 181 NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLEN 260 (342)
T ss_pred chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHH
Confidence 89999999999999998 88999999999999999999985 5667888999999999777655554444555555666
Q ss_pred HhccCCHHHHHHHHHHHHHHhc
Q psy15604 255 LLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 255 ll~~~~~~~~~~a~~aL~~La~ 276 (986)
+....+..+...+..++..+..
T Consensus 261 l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 261 LISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhccchhhhHHHHHHHHHHHH
Confidence 6666667777777777666654
No 57
>KOG1789|consensus
Probab=98.61 E-value=0.00022 Score=81.94 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=86.6
Q ss_pred cchhHHHhCCCHHHHHHHHcc----------C-C--HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCH
Q psy15604 112 DQDDADLATRAIPELIKLLND----------E-D--QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178 (986)
Q Consensus 112 ~~~~~i~~~g~i~~L~~ll~~----------~-~--~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~ 178 (986)
-+...+...|+++.|..++.. + + ..+..+.+.++.-.+..++.|+.+.+-+.+|+.+++++..+.-+
T Consensus 1418 LNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vP 1497 (2235)
T KOG1789|consen 1418 LNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLP 1497 (2235)
T ss_pred cCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccc
Confidence 355677889999999888753 1 1 33566667888888899999999999998999999999887778
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhh
Q psy15604 179 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLL 214 (986)
Q Consensus 179 ~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL 214 (986)
.+...+++.+..++.++.-+-.+++.|++=-++.+|
T Consensus 1498 r~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~L 1533 (2235)
T KOG1789|consen 1498 RLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHL 1533 (2235)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHH
Confidence 888999999999999999999999999988888777
No 58
>KOG2160|consensus
Probab=98.60 E-value=2.4e-06 Score=88.12 Aligned_cols=183 Identities=17% Similarity=0.144 Sum_probs=150.1
Q ss_pred cCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHH
Q psy15604 132 DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPAL 210 (986)
Q Consensus 132 ~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L 210 (986)
+.+.+-+..|+.-|..++.+=++...+...||. .+++..+++ .+.++|+.|+++|+..+.+ |..++.+.+.|+.+.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl-~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGL-VPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCH-HHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 345777888888888888888899999999986 777777777 6999999999999999998 8999999999999999
Q ss_pred HHhhCCCCH-hHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhccChhhHHHHHh
Q psy15604 211 VKLLSSPVE-SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAYGNQESKLIILA 287 (986)
Q Consensus 211 v~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~aL~~La~~~~~~~~~~~~ 287 (986)
+..+.+.++ .++..|+.+++.+..+++.....+...+|...|...+.+ .+.+.+..++..+..|...+...+..+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999987654 467999999999999999999999999999999999988 66888899999999998866666665555
Q ss_pred CCCHHHHHHHHhcCChHHHHHHHHHHHHHh
Q psy15604 288 SQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317 (986)
Q Consensus 288 ~g~v~~L~~ll~~~~~~~~~~~a~~aL~~L 317 (986)
.+....+..+....+.+ +.+.+..++..+
T Consensus 252 ~~f~~~~~~l~~~l~~~-~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFE-VNEAALTALLSL 280 (342)
T ss_pred hhhhHHHHHHhhccchh-hhHHHHHHHHHH
Confidence 55555555555554444 777776665443
No 59
>KOG0213|consensus
Probab=98.60 E-value=0.0013 Score=73.46 Aligned_cols=587 Identities=15% Similarity=0.101 Sum_probs=282.9
Q ss_pred cHHHHHHHh----cCC-ChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccC
Q psy15604 78 AIPELIKLL----NDE-DQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE 152 (986)
Q Consensus 78 ~i~~l~~ll----~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~ 152 (986)
+++.|..+| +|. +++.+.-++++...++.++-.. ..-.-.+.+..+-..|.++...+|..++.+|..++...
T Consensus 508 gip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs---vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 508 GIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS---VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred CcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcch---hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 455555544 333 5666665555555554432111 00000112223334445566778888888888888653
Q ss_pred -cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHH
Q psy15604 153 -ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLH 230 (986)
Q Consensus 153 -~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 230 (986)
..+..-.++ ++.+|.+-.+.... .....-+.++..|+-. ++.-...+...++-.+++-..++|++.+.-++..+.
T Consensus 585 ~Pygie~fDs--VlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 585 TPYGIEQFDS--VLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred CCcchHHHHH--HHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 222222221 34566655554322 2333334455555443 223333344445667788889999999999999999
Q ss_pred HHhcCCCCchHHHHHcCcHHHHHHHhccCC-----HHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHH
Q psy15604 231 NLLLHQEGSKMAVRLAGGLQKMVLLLGRNN-----VKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 305 (986)
Q Consensus 231 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~ 305 (986)
.+| ..+...........+|.++..+.... ...+ .....-..+|. .+.....+..++.=+++.. +.
T Consensus 662 qcc-~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~yk-qlv~ttv~ia~-------KvG~~~~v~R~v~~lkde~-e~ 731 (1172)
T KOG0213|consen 662 QCC-ATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYK-QLVDTTVEIAA-------KVGSDPIVSRVVLDLKDEP-EQ 731 (1172)
T ss_pred HHh-cccCCCHHHHhhhhhHHHHhhhhhhhhhccccchh-hHHHHHHHHHH-------HhCchHHHHHHhhhhcccc-HH
Confidence 999 55566666666788888877764311 1111 11111111111 1111111222222222221 11
Q ss_pred HHHHHH----HHHHHhhhCCCChHHHHHhccHHHHHHHhCCC--CHHHHHHHHHHHhccccc----------cccccccc
Q psy15604 306 LLWCTS----RVLKVLSVCSSNKPAIVEAGGMQALAMHLGHP--SQRLVQNCLWTLRNLSDA----------GTKVSLLF 369 (986)
Q Consensus 306 ~~~~a~----~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~--~~~~~~~~~~~L~~ls~~----------~~~i~ll~ 369 (986)
-+.... +...+|.... ...-.+...+..++-.+.+. ...+...+..+..+--.. ++.+..|+
T Consensus 732 yrkm~~etv~ri~~~lg~~d--iderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAAD--IDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHHHHHhcccccc--ccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 222222 2222222111 11111122222222222111 111112222222111000 01134456
Q ss_pred CCchHHHHHHHHHHHHHhhChhhH---HHHHhcCCcHHHHHHhccCchhHHHHHHHHH-HHHhhccccccccccccccch
Q psy15604 370 NEIENIQRVAAGLLCELAQDKEGA---ETIEAEGATAPLTDLLHSRNEGVEILIQGVH-KIFKIHKINIHRGCLMFPETL 445 (986)
Q Consensus 370 ~~~~~~~~~a~~~L~~l~~~~~~~---~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~-al~~~~~~~~~~~~~~~~~~~ 445 (986)
+.++.++..|+..+..++.--..+ +.|...|. .|-+.+......+ ...++ |+..+.++-. ...|+|
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEv---LgsILgAikaI~nvig--m~km~p--- 879 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEV---LGSILGAIKAIVNVIG--MTKMTP--- 879 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHH---HHHHHHHHHHHHHhcc--ccccCC---
Confidence 777888888888887776322222 12222221 1223333222222 11111 2222111100 000100
Q ss_pred hhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc
Q psy15604 446 EEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA 525 (986)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 525 (986)
-..+.+|.|.-+|++....+++.++..++.++....
T Consensus 880 --------------------------------------------Pi~dllPrltPILknrheKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 880 --------------------------------------------PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred --------------------------------------------ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 014558889999999999999999999999877654
Q ss_pred c----chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHH
Q psy15604 526 S----RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 601 (986)
Q Consensus 526 ~----~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 601 (986)
. +..+ .+--.|+++|+.. +.++++.|..+++-++.-- .-...+..|++-|+......+.....++
T Consensus 916 E~v~aREWM----RIcfeLlelLkah-kK~iRRaa~nTfG~IakaI------GPqdVLatLlnnLkvqeRq~RvcTtvaI 984 (1172)
T KOG0213|consen 916 EYVSAREWM----RICFELLELLKAH-KKEIRRAAVNTFGYIAKAI------GPQDVLATLLNNLKVQERQNRVCTTVAI 984 (1172)
T ss_pred ccCCHHHHH----HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhc------CHHHHHHHHHhcchHHHHHhchhhhhhh
Confidence 2 2222 2234566666554 6889999998888887621 0111223333333332222222222233
Q ss_pred HHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcC-CcccHHHHHhCCChHHHHHHHhcCChhHHHH
Q psy15604 602 HNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVRIMRSYDYEKLLW 680 (986)
Q Consensus 602 ~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 680 (986)
.-.+..+. -..++|.|+.=-..++..||.-...+++-+... ..-++..+.. ..+.|-..|.+.| ..-+.
T Consensus 985 aIVaE~c~-------pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya--v~PlleDAlmDrD-~vhRq 1054 (1172)
T KOG0213|consen 985 AIVAETCG-------PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRD-LVHRQ 1054 (1172)
T ss_pred hhhhhhcC-------chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhcccc-HHHHH
Confidence 33222111 123456665555567778888777777766542 1234444432 3445555666666 44556
Q ss_pred HHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhC-------CCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhcc
Q psy15604 681 CTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG-------HPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLAS 753 (986)
Q Consensus 681 ~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~-------~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~ 753 (986)
.++.++..++-+... .|..+.++.+|. .++|.++.....++--+... ..-...+..+.+-|-+
T Consensus 1055 ta~~~I~Hl~Lg~~g------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~----Lg~~~~~~Y~~QGLFH 1124 (1172)
T KOG0213|consen 1055 TAMNVIKHLALGVPG------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVA----LGPQAMLKYCLQGLFH 1124 (1172)
T ss_pred HHHHHHHHHhcCCCC------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHH----hchHHHHHHHHHhccC
Confidence 778888888776331 244444544443 46777777776666555421 1112334455555667
Q ss_pred CChhhHHHHHHHHh
Q psy15604 754 QDINVITCAAGVTV 767 (986)
Q Consensus 754 ~~~~i~~~a~~~L~ 767 (986)
+...+|+.-+.+..
T Consensus 1125 ParkVR~~yw~vyn 1138 (1172)
T KOG0213|consen 1125 PARKVRKRYWTVYN 1138 (1172)
T ss_pred cHHHHHHHHHHHHH
Confidence 77777766555554
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.59 E-value=1.3e-06 Score=94.26 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=155.4
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHhcccCcchhHh-hhC-----CchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q psy15604 123 IPELIKLLND--EDQVVVSQAAMMVHQLSKKEASRHAI-MNS-----PQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 123 i~~L~~ll~~--~~~~~~~~a~~~L~~la~~~~~~~~i-~~~-----~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~ 194 (986)
...++.+|+. .+.++....+..+..|..+...+..+ ... +..+.++++++.. +|..++..|+..|..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHc
Confidence 4455555553 57889999999999988766444433 331 1135788887776 5999999999999999887
Q ss_pred ccchHHHHhcCChHHHHHhhCC----CCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHh-----cc--CCHHH
Q psy15604 195 RQGLLAIFKSGGIPALVKLLSS----PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL-----GR--NNVKF 263 (986)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll-----~~--~~~~~ 263 (986)
......-...+.++.++..+.+ ++.+.+..++.+|.++. ..+.+|..+.+.++++.+..++ .+ .+...
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 4444333335667788877754 34557799999999999 6778999999999999999999 22 33567
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCC--ChHHHHHhccHHHHHHHhC
Q psy15604 264 LAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS--NKPAIVEAGGMQALAMHLG 341 (986)
Q Consensus 264 ~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~L~~ll~ 341 (986)
+-.++.++..|++ +++....+.+.+.++.|+++++....+++..-+..+|.|+..... +...|+..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 7788999999999 677888899999999999999998888888889999999986655 6788899988888877775
Q ss_pred C
Q psy15604 342 H 342 (986)
Q Consensus 342 ~ 342 (986)
.
T Consensus 294 r 294 (312)
T PF03224_consen 294 R 294 (312)
T ss_dssp S
T ss_pred C
Confidence 5
No 61
>KOG0946|consensus
Probab=98.57 E-value=9.7e-05 Score=82.79 Aligned_cols=303 Identities=15% Similarity=0.125 Sum_probs=209.0
Q ss_pred hhHHHHHHHHhcCCChhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcHHH
Q psy15604 2 EMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPE 81 (986)
Q Consensus 2 ~~~~~lv~~l~~~~d~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~~ 81 (986)
|-|+.|+.-..++--++-|+.|+..|..+++ ..|..+.- -|++++++.|+.+ .....++. -+++.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga-~Gmk~li~vL~~D-----~~D~E~ik-------~~LdT 86 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA-QGMKPLIQVLQRD-----YMDPEIIK-------YALDT 86 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH-cccHHHHHHHhhc-----cCCHHHHH-------HHHHH
Confidence 5688999999988889999999999999985 44555443 4589999999862 11112221 15666
Q ss_pred HHHHhcCCChhhHH----HHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc--Ccch
Q psy15604 82 LIKLLNDEDQDDAD----LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK--EASR 155 (986)
Q Consensus 82 l~~ll~~~~~~~~~----~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~--~~~~ 155 (986)
+.-+..+++.+... .+...=..++. .-|...+.|..|+..+...|--||..+...+.++-.. ...+
T Consensus 87 l~il~~~dd~~~v~dds~qsdd~g~~iae--------~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q 158 (970)
T KOG0946|consen 87 LLILTSHDDSPEVMDDSTQSDDLGLWIAE--------QFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ 158 (970)
T ss_pred HHHHHhcCcchhhcccchhhhHHHHHHHH--------HHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH
Confidence 66666655422100 00000001111 1234577889999999999999999999999986643 3788
Q ss_pred hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCC---CH-hHHHHHHHHHH
Q psy15604 156 HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSP---VE-SVLFYAITTLH 230 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~---~~-~~~~~a~~~L~ 230 (986)
..+...+-.|..++.+|.+ .-+.+|-.+...|..|..+ +..+..++=.++.+.|..++... +. -+...|+..|.
T Consensus 159 ~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 159 DALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999887668999999998 4677999999999999998 45555555568999999998643 22 47889999999
Q ss_pred HHhcCCCCchHHHHHcCcHHHHHHHhcc---CC--------HHHH--HHHHHHHHHHhc------cChhhHHHHHhCCCH
Q psy15604 231 NLLLHQEGSKMAVRLAGGLQKMVLLLGR---NN--------VKFL--AIVTDCLQILAY------GNQESKLIILASQGP 291 (986)
Q Consensus 231 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~---~~--------~~~~--~~a~~aL~~La~------~~~~~~~~~~~~g~v 291 (986)
||...+..++..+.+.+.||.|.++|.. .+ .+++ ..+..++..+.. ....++..+.+.+++
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll 317 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLL 317 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchH
Confidence 9999999999999999999999988843 11 1111 234555556654 123456788999999
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHHhh-hCCCChHHHH
Q psy15604 292 VELVRIMRSY-DYEKLLWCTSRVLKVLS-VCSSNKPAIV 328 (986)
Q Consensus 292 ~~L~~ll~~~-~~~~~~~~a~~aL~~Ls-~~~~~~~~i~ 328 (986)
..|..++-++ -+.+++.-+.-++.+.. .+..++..+.
T Consensus 318 ~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~ 356 (970)
T KOG0946|consen 318 DVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFA 356 (970)
T ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHh
Confidence 9999988776 33344444444444433 4555555544
No 62
>PF05536 Neurochondrin: Neurochondrin
Probab=98.56 E-value=0.00014 Score=83.48 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=120.6
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcch----hHHHhCCCHHHHHHHHccC-------CHHHHHHHHHHH
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQD----DADLATRAIPELIKLLNDE-------DQVVVSQAAMMV 145 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~----~~i~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L 145 (986)
..++..+++|++.+ +.++.+ +|..+.+++...+.. +.+.++=+.+-|-++|+++ ....+..+..+|
T Consensus 5 ~~l~~c~~lL~~~~-D~~rfa--gL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD-DTERFA--GLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCC-cHHHHH--HHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 36888999999888 665554 454577777665432 3466666678889999983 366788889999
Q ss_pred HHhcccCcch--hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHH
Q psy15604 146 HQLSKKEASR--HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLF 223 (986)
Q Consensus 146 ~~la~~~~~~--~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 223 (986)
..++..|+.. ..+.. .||.|++++....+..+..-|..+|..++..+++++.+.+.|+++.|++.+.+ .+....
T Consensus 82 ~~f~~~~~~a~~~~~~~---~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVS---RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHHHH---HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 9999987553 44444 37999999988666689999999999999999999999999999999999987 566788
Q ss_pred HHHHHHHHHhcC
Q psy15604 224 YAITTLHNLLLH 235 (986)
Q Consensus 224 ~a~~~L~~L~~~ 235 (986)
.++.+|.+++..
T Consensus 158 ~Al~lL~~Lls~ 169 (543)
T PF05536_consen 158 IALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHh
Confidence 999999998844
No 63
>KOG4413|consensus
Probab=98.52 E-value=5e-05 Score=76.21 Aligned_cols=385 Identities=13% Similarity=0.128 Sum_probs=230.9
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCc---chh-HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA---SRH-AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG 197 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~---~~~-~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~ 197 (986)
..|.|-.-|..+|..++..+++.++.+-.+.+ ..+ ..+...++++.++..+-. +|.++...|...+.+++..|..
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcHHH
Confidence 34555566667888899999998888876643 222 222234577888887776 6889999999999999999999
Q ss_pred hHHHHhcCChHHH--HHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q psy15604 198 LLAIFKSGGIPAL--VKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQIL 274 (986)
Q Consensus 198 ~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~L 274 (986)
-+.+++......+ ..+.-..++-.+..+...+..+.+-++.......++|.+..|..-++. ++.-+...+.+....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 9999998776544 333334455678888899999988888777888889999988888876 5566777788888888
Q ss_pred hccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChH--HHHHhccHHHHHHHhCCCCHHHHHHHH
Q psy15604 275 AYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP--AIVEAGGMQALAMHLGHPSQRLVQNCL 352 (986)
Q Consensus 275 a~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~--~i~~~g~l~~L~~ll~~~~~~~~~~~~ 352 (986)
+.. ...++.+.+.|.++.+..++...+.++.. -.+++.-....-++.. ...+......+...+
T Consensus 242 aet-eHgreflaQeglIdlicnIIsGadsdPfe--kfralmgfgkffgkeaimdvseeaicealiiai------------ 306 (524)
T KOG4413|consen 242 AET-EHGREFLAQEGLIDLICNIISGADSDPFE--KFRALMGFGKFFGKEAIMDVSEEAICEALIIAI------------ 306 (524)
T ss_pred HHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHH--HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHH------------
Confidence 873 34778888999999999988754332111 1122221111111100 001111111121111
Q ss_pred HHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCC--cHHHHHHhccCc-hhHHHHHHHHHHHHhh
Q psy15604 353 WTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGA--TAPLTDLLHSRN-EGVEILIQGVHKIFKI 429 (986)
Q Consensus 353 ~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~--l~~Lv~ll~~~~-~~~~~~~~~~~al~~~ 429 (986)
.....++.+.++++++.|.-++..+..+.+..+.+...|- ...++.-....+ ...+..+.. ++.++
T Consensus 307 ---------dgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaih--aLaaI 375 (524)
T KOG4413|consen 307 ---------DGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIH--ALAAI 375 (524)
T ss_pred ---------HhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHH--HHHHh
Confidence 1113445678899999999999999988887777766653 333333332222 222222222 22222
Q ss_pred ccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHH
Q psy15604 430 HKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVV 509 (986)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 509 (986)
...-. ..++ .+.+.. ....++..+.+-.. ..........+...++.+.+++
T Consensus 376 agelr-----lkpe----------qitDgk----------aeerlrclifdaaa----qstkldPleLFlgilqQpfpEi 426 (524)
T KOG4413|consen 376 AGELR-----LKPE----------QITDGK----------AEERLRCLIFDAAA----QSTKLDPLELFLGILQQPFPEI 426 (524)
T ss_pred hcccc-----CChh----------hccccH----------HHHHHHHHHHHHHh----hccCCChHHHHHHHHcCCChhh
Confidence 21100 0000 011100 00001111111000 0001234556777888899999
Q ss_pred HHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC--CCHHHHHHHHHHHHH
Q psy15604 510 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS--NDLETTKGAVGTLHN 562 (986)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~--~~~~~~~~a~~~L~~ 562 (986)
+..+...+..++..+.....++.+++++....+.-... -..+.+++++.++.+
T Consensus 427 hcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 427 HCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888877777777777776655432111 013556666666655
No 64
>KOG3678|consensus
Probab=98.47 E-value=1.3e-05 Score=83.95 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=140.1
Q ss_pred HHHhCCCHHHHHHHHccCCHH--HHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q psy15604 116 ADLATRAIPELIKLLNDEDQV--VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 193 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~~~~~--~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~ 193 (986)
.+...|++..|++++.+++.+ ++..|+++|..+... ++++.++..| +..++.+-+..+.++..+..+.+|.++-.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~--~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG--LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc--chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 455678999999999998754 588899988876543 5788888775 47777766666788999999999999999
Q ss_pred C-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC-CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Q psy15604 194 H-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCL 271 (986)
Q Consensus 194 ~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL 271 (986)
+ .+.+..+++.|++..++-.+...+|++..+|+-+|+|++.+. ...++.+++..+-++|..+-.+.++-.+-.+|.+.
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 8 678899999999999999999999999999999999998653 34566788888889999888888888889999999
Q ss_pred HHHhccChhhHHHHHhCCCH
Q psy15604 272 QILAYGNQESKLIILASQGP 291 (986)
Q Consensus 272 ~~La~~~~~~~~~~~~~g~v 291 (986)
+.|+. +.+....+...|.+
T Consensus 332 ~vlat-~KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 332 AVLAT-NKEVEREVRKSGTL 350 (832)
T ss_pred hhhhh-hhhhhHHHhhccch
Confidence 99987 44555555555543
No 65
>KOG4646|consensus
Probab=98.44 E-value=1.5e-06 Score=75.25 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=111.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 164 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
.+..|+.-...+.+.+.++.....|+|++.+|-|-..+.+..++..++..|..++.-+++.++..|+|+| -++.+.+.|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC-~d~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC-LDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc-cChHHHHHH
Confidence 5678888888888999999999999999999999999999999999999999999999999999999999 667788899
Q ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCC
Q psy15604 244 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQG 290 (986)
Q Consensus 244 ~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~ 290 (986)
.+++++|.++..+.+....+...++.++.-|+......+..+....+
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~V 142 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAV 142 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHH
Confidence 99999999999999988888888888999998877666766644333
No 66
>KOG1059|consensus
Probab=98.43 E-value=0.0023 Score=71.51 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred hHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH
Q psy15604 207 IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIIL 286 (986)
Q Consensus 207 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~ 286 (986)
-+-++.+|++..+.++..|+..++.++...+ .++. -.+|.|..-|.++++.++.+|...+|.||..+|.+--.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---eAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---EALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---HhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 3457889999999999999999999995443 3443 568999999999999999999999999999888665543
Q ss_pred hCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCC-HHHHHHHHHHH
Q psy15604 287 ASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPS-QRLVQNCLWTL 355 (986)
Q Consensus 287 ~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~~~~~~~~L 355 (986)
.|.+.++|-..+..=+.......+..|+.-. + =.....+++|..++.+++ ..+.++|..+.
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplE---P-RLgKKLieplt~li~sT~AmSLlYECvNTV 281 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE---P-RLGKKLIEPITELMESTVAMSLLYECVNTV 281 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccC---c-hhhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 4888888887654323334455555555321 1 123345788888887654 34455555543
No 67
>KOG2759|consensus
Probab=98.43 E-value=9.5e-05 Score=77.50 Aligned_cols=335 Identities=16% Similarity=0.132 Sum_probs=213.3
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHH-------hCCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADL-------ATRAIPELIKLLNDEDQVVVSQAAMMVHQLS 149 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~-------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la 149 (986)
..+-.++.+++..+.++... -.|..+...++.+..+..+. ..-.-+..+++|..++..+......++..++
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~--yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQ--YVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhchhhhHHHHH--HHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 46778888887666555322 23434555555555554332 1223567899999999999999999999988
Q ss_pred ccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC--CHhHHHHHHH
Q psy15604 150 KKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP--VESVLFYAIT 227 (986)
Q Consensus 150 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~ 227 (986)
..-...-...+-.-....|-.+++++.+.+....|+++|..+...++.|..++..+++..++..+.+. +-.++.+.+.
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 65432222111111234455566776777888889999999999999999999999999999999433 5568889999
Q ss_pred HHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhccCh------hhHHHHHhCCCHHHHHHHHhc
Q psy15604 228 TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQ------ESKLIILASQGPVELVRIMRS 300 (986)
Q Consensus 228 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~------~~~~~~~~~g~v~~L~~ll~~ 300 (986)
++.-|. .++.....+...+.|+.|..+++. ..+++...++.++.|+....+ +....++..++.+.+-.+-..
T Consensus 223 ciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 223 CIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 999999 667777777888899999999987 457888999999999976442 444667777765555444432
Q ss_pred -CChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHh-CCCC--------------HHHHHHHHHHHhcccccccc
Q psy15604 301 -YDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL-GHPS--------------QRLVQNCLWTLRNLSDAGTK 364 (986)
Q Consensus 301 -~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll-~~~~--------------~~~~~~~~~~L~~ls~~~~~ 364 (986)
.+++++....-..-..|-.....-..+-++ .-+.....| .+|. .+-..+.+..|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY-~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL--------- 371 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEY-KSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKIL--------- 371 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHH-HHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHH---------
Confidence 344555543322222221110000000000 000000000 0000 00001111111
Q ss_pred ccccc-CCchHHHHHHHHHHHHHh-hChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH
Q psy15604 365 VSLLF-NEIENIQRVAAGLLCELA-QDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424 (986)
Q Consensus 365 i~ll~-~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~ 424 (986)
+.++. +.+|.+...||.=++... ..|+.+..+.+.||=+.+.+++..+++.++..+..+.
T Consensus 372 ~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 372 IKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred HHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 22332 445777778888888877 4589999999999999999999999999988554433
No 68
>KOG2973|consensus
Probab=98.32 E-value=0.00012 Score=73.34 Aligned_cols=278 Identities=16% Similarity=0.175 Sum_probs=176.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHh
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK 203 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 203 (986)
..++.++.+.++.++..|..-+..++.. ..+.....+...++.+.++++.. ++ .+.|+.+|.|++..+.-++.+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 4688999999999999999989888876 44444433334567788877763 33 67788899999999998888888
Q ss_pred cCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHc-----CcHHHHHHHh-ccC-CH-HHHHHHHHHHHHHh
Q psy15604 204 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLA-----GGLQKMVLLL-GRN-NV-KFLAIVTDCLQILA 275 (986)
Q Consensus 204 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-----g~i~~L~~ll-~~~-~~-~~~~~a~~aL~~La 275 (986)
. .+..++.++..+....-...+..|.|+++.+.......... .++..++..+ +.+ +. .-....+..+++|+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 7 77788888887766778888999999996654444333221 2344444443 321 21 12234566777887
Q ss_pred ccChhhHHHHHhCCCHH--HHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHh--ccHHHHHHHhCCC---CHHHH
Q psy15604 276 YGNQESKLIILASQGPV--ELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEA--GGMQALAMHLGHP---SQRLV 348 (986)
Q Consensus 276 ~~~~~~~~~~~~~g~v~--~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~--g~l~~L~~ll~~~---~~~~~ 348 (986)
+ .+..|..+.....++ .++.+- +++....+...+..|.|.+....++..+... ..++.++.=+..+ +.+-.
T Consensus 161 ~-~~~gR~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 Q-FEAGRKLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred h-hhhhhhHhcchhhhhHhhhhccc-ccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 6 455777776665332 222222 2333434456678888877666666665542 2344443333221 11111
Q ss_pred HHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCc
Q psy15604 349 QNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRN 413 (986)
Q Consensus 349 ~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~ 413 (986)
...---|+-+.... -+.+++.++..-.++|..|+.....|..+...|+.+.+..+-....
T Consensus 239 ~~LP~eLQyLp~dK-----eRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ 298 (353)
T KOG2973|consen 239 AKLPVELQYLPEDK-----EREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEE 298 (353)
T ss_pred hcCCHhhhcCCccc-----cCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCC
Confidence 10000111111111 1256789999999999999999999999999998888877765543
No 69
>KOG1789|consensus
Probab=98.31 E-value=0.0052 Score=71.16 Aligned_cols=386 Identities=17% Similarity=0.174 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHH----HHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHH
Q psy15604 220 SVLFYAITTLHNLLLHQEGSKMAV----RLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVEL 294 (986)
Q Consensus 220 ~~~~~a~~~L~~L~~~~~~~~~~i----~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L 294 (986)
.-...++.+|.|+...+++....+ .--|-++.+..++.. .+++++..+...+..+.. +.++...+++.|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 346788999999998888554322 224667788888866 567888888887765554 67788999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchH
Q psy15604 295 VRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIEN 374 (986)
Q Consensus 295 ~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~ 374 (986)
+.++.+.. ..++.++..|+.|+..+.-...-.+.|++..+..++.. +.++.
T Consensus 1819 L~lLHS~P--S~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~---------------------------~~~~Q 1869 (2235)
T KOG1789|consen 1819 LTLLHSQP--SMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCL---------------------------TNSDQ 1869 (2235)
T ss_pred HHHHhcCh--HHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhc---------------------------cCcHH
Confidence 99997653 36778889999998877776777778888877766643 34455
Q ss_pred HHHHHHHHHHHHhhCh----hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccC
Q psy15604 375 IQRVAAGLLCELAQDK----EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIE 450 (986)
Q Consensus 375 ~~~~a~~~L~~l~~~~----~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 450 (986)
.+..+++.|+.+..++ ..+-.++.- .-..++..++++.+.. .- +++.+.+
T Consensus 1870 qRAqaAeLlaKl~Adkl~GPrV~ITL~kF-LP~~f~d~~RD~PEAa-------VH--------------~fE~T~E---- 1923 (2235)
T KOG1789|consen 1870 QRAQAAELLAKLQADKLTGPRVTITLIKF-LPEIFADSLRDSPEAA-------VH--------------MFESTSE---- 1923 (2235)
T ss_pred HHHHHHHHHHHhhhccccCCceeeehHHh-chHHHHHHHhcCHHHH-------HH--------------HHhccCC----
Confidence 5666666666665444 111111111 1122333344332111 00 1110000
Q ss_pred CCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCc-hhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc--c
Q psy15604 451 IPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQD-DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS--R 527 (986)
Q Consensus 451 ~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~ 527 (986)
.|..-..+ ..-+++ +..++.-+..+.+.|. +..+. =-+|+=..-....+.+.+. .-..++.....+.. +
T Consensus 1924 nPELiWn~---~~r~kv---S~~i~tM~~~~y~~QQk~p~~~-W~~PEqsAg~~Ea~~E~aV-GG~~~R~Fi~~P~f~LR 1995 (2235)
T KOG1789|consen 1924 NPELIWNE---VTRQKV---SGIIDTMVGKLYEQQQKDPTVK-WNTPEQSAGTSEADKECAV-GGSINREFVVGPGFNLR 1995 (2235)
T ss_pred CcccccCH---hHHHHH---HHHHHHHHHHHHHHhccCCccc-ccCchhhcchhhhccCccc-chhhhHHHhhCCCCccc
Confidence 00000000 000000 0000011111111111 11100 0000000000000000000 00112222222221 1
Q ss_pred --hhhhcccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHh-hCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHH
Q psy15604 528 --HAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHN 603 (986)
Q Consensus 528 --~~l~~~~~~i~~L~~lL~~~~-~~~~~~~a~~~L~~l-s~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 603 (986)
..++ .+.++.+.+++...+ .......-..++..| ..++.-...+-..|.+|.++..+...+..+-..|+..|..
T Consensus 1996 ~Pk~FL--~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~ 2073 (2235)
T KOG1789|consen 1996 HPKLFL--TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHE 2073 (2235)
T ss_pred CHHHHH--HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHH
Confidence 1111 156677777775432 111222222223333 3366667777789999999999888777788999999999
Q ss_pred hhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC-cccHHHHHhCCChHHHHHHHhcC
Q psy15604 604 LLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN-QESKLIILASQGPVELVRIMRSY 673 (986)
Q Consensus 604 l~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~ 673 (986)
|+. +.-+.+.......+..++..++... .....|+.+|..+...+ .+--...++.|.++.|+++|...
T Consensus 2074 Lse-n~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2074 LSE-NQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred Hhh-ccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 984 4445566666677777887776543 44568889998887643 22333457788899999998654
No 70
>KOG0212|consensus
Probab=98.28 E-value=0.0003 Score=76.16 Aligned_cols=374 Identities=15% Similarity=0.133 Sum_probs=203.8
Q ss_pred HhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh
Q psy15604 202 FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQES 281 (986)
Q Consensus 202 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~ 281 (986)
.-.+.+++++..+++.+..++.+|+..|+|++....... ...-......+.++..+.+..++ -+++.+-.+-.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLik----- 153 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIK----- 153 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHH-----
Confidence 556799999999999999999999999999994321111 11111223334444433333333 34444444422
Q ss_pred HHHHHhC---CCHHHHHHHHhcC----ChHHHHHHHHHHHHHhhhCCCChHHHHH--hccHHHHHHHhCCCCHHHHHHHH
Q psy15604 282 KLIILAS---QGPVELVRIMRSY----DYEKLLWCTSRVLKVLSVCSSNKPAIVE--AGGMQALAMHLGHPSQRLVQNCL 352 (986)
Q Consensus 282 ~~~~~~~---g~v~~L~~ll~~~----~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~l~~L~~ll~~~~~~~~~~~~ 352 (986)
..+.+. =-++.++.+++.+ ++. .+.....=|..|-.-++ -.|+. ...++.|..+|++++++++.-+=
T Consensus 154 -dIVte~~~tFsL~~~ipLL~eriy~~n~~-tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 154 -DIVTESASTFSLPEFIPLLRERIYVINPM-TRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred -HhccccccccCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence 111111 1356666666643 222 44434444444433222 22332 35678888999999998886555
Q ss_pred HHHhcc----cccc----------cccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchh-HH
Q psy15604 353 WTLRNL----SDAG----------TKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEG-VE 417 (986)
Q Consensus 353 ~~L~~l----s~~~----------~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~-~~ 417 (986)
-+|..+ ...+ ..+..+.+.++.+|..|..-+..+..-....-...-.|++..++..+.+.... .+
T Consensus 230 t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~ 309 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIK 309 (675)
T ss_pred HHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHH
Confidence 545443 1111 12677778889999888777666654333333333445555555555544332 22
Q ss_pred HHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCC-chhhhhc-CCH
Q psy15604 418 ILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQ-DDADLAT-RAI 495 (986)
Q Consensus 418 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~-~~~~~~~-~~i 495 (986)
..+..... .+..++... ...+++- ..+
T Consensus 310 ~~a~~~n~---------------------------------------------------~l~~l~s~~~~~~~id~~~ii 338 (675)
T KOG0212|consen 310 EYAQMVNG---------------------------------------------------LLLKLVSSERLKEEIDYGSII 338 (675)
T ss_pred HHHHHHHH---------------------------------------------------HHHHHHhhhhhccccchHHHH
Confidence 22211110 000000000 0000111 235
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhc
Q psy15604 496 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK 575 (986)
Q Consensus 496 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 575 (986)
+.+.+.+.++..+++..++.-+..+-...++ +-+.....+.+.|+.-|++. +.++...+...+.+++.+++....
T Consensus 339 ~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~~~--- 413 (675)
T KOG0212|consen 339 EVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNSPNL--- 413 (675)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcccccH---
Confidence 6777888899999999988877777444332 22222236677777777654 678899999999999986554411
Q ss_pred cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhcC
Q psy15604 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~ 649 (986)
-.++..|.++...+..-+...+...++.+|.--+. ..+-..+..++.. ++-++......+|...-..
T Consensus 414 ~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a-------E~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlT 481 (675)
T KOG0212|consen 414 RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA-------ERIYRSIADILEREENLKFASTMVQALNTILLT 481 (675)
T ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH-------HHHHHHHHHHHhccccchHHHHHHHHHHhhhcc
Confidence 11233444444555555677777777877743221 1222334444433 4555666666666655443
No 71
>KOG4646|consensus
Probab=98.28 E-value=4.8e-06 Score=72.19 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=112.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHH
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 614 (986)
+.+..|+.-++...+.+.++....-|.|.+.++.+...+.+.+.++.++..|..+++..++.++..|+|+|.+.. ....
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence 456777777777778999999999999999999999999999999999999999999999999999999996654 6777
Q ss_pred HHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChH
Q psy15604 615 VRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPV 664 (986)
Q Consensus 615 v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 664 (986)
+++.+++|.++..+.++...+...+..++..|+.+....+..+.++..+.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR 144 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence 88899999999999999999999999999999998766677776654443
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.22 E-value=0.0028 Score=69.37 Aligned_cols=267 Identities=14% Similarity=0.109 Sum_probs=164.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccc--hhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccch-
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR--HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL- 570 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~- 570 (986)
.+..++++|++..+.++..|+...+.++.--... .+.+..-| -.|.+.|.. ..|++.-....+++.+.+.-..+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGE-DYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccc
Confidence 4677888999999999999988887775432211 11111112 124444533 36777776666666665421111
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC---ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG---SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
-.---.|.+|.|...|++...+++.+.+..++.+|...++ .|+..+ .--.|++.|++.+.++++.|...+..++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 0111268899999999999999999999999999988775 233333 2234788899999999999999998887
Q ss_pred cCCcccHHHHHhCCChHHHHHH-HhcCChhHHHHHHHHHHH--HhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHH
Q psy15604 648 YGNQESKLIILASQGPVELVRI-MRSYDYEKLLWCTSRVLK--VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 724 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~~~~~~~~~~L~--~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al 724 (986)
+- -|++.++.. |.+-..++.+..+|..+. ..+... .. -.+++.|+.=-..+...++.-.+
T Consensus 759 ~a-----------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c---gp---fsVlP~lm~dY~TPe~nVQnGvL 821 (975)
T COG5181 759 RA-----------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC---GP---FSVLPTLMSDYETPEANVQNGVL 821 (975)
T ss_pred hh-----------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc---Cc---hhhHHHHHhcccCchhHHHHhHH
Confidence 63 244444443 333333444433333222 221110 00 12455555555567788888888
Q ss_pred HHHHHhhccccccc--chhchHHHHHHHhccCChhhHHHHHHHHhhh-----ccCcHHHHHHHHhc
Q psy15604 725 WTLRNLSDAGTKVD--GLESLLQSLVQLLASQDINVITCAAGVTVCQ-----VGGVEALVQTIVNA 783 (986)
Q Consensus 725 ~~L~nLs~~~~~~~--~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni-----~~g~~~~v~~l~~~ 783 (986)
.++..+-....++. ......|.|-+-+.+.|+.-|.-|..+|..+ .+|.++..=-++|+
T Consensus 822 kam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNl 887 (975)
T COG5181 822 KAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNL 887 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH
Confidence 88887764443322 2235667777888888988888888777643 33444444444443
No 73
>KOG1060|consensus
Probab=98.20 E-value=0.0051 Score=69.57 Aligned_cols=426 Identities=15% Similarity=0.178 Sum_probs=234.7
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
.++..++...+.+.++++..-- .|.++++...+ +.-=.|..+-+-|+++++.+|..|+++|..+--.
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyv---YLlrYAEeqpd----LALLSIntfQk~L~DpN~LiRasALRvlSsIRvp------ 138 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYV---YLLRYAEEQPD----LALLSINTFQKALKDPNQLIRASALRVLSSIRVP------ 138 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHH---HHHHHhhcCCC----ceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------
Confidence 5777777787777777654322 33343332211 1122567888999999999999998888765432
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
+.. +-++-++-++.++ ..+-+|..|+.++-.|-.- ++.+.++.+ .+=.+|.+.++-+.-.|+.+.-.+|
T Consensus 139 ~Ia-PI~llAIk~~~~D-~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--- 208 (968)
T KOG1060|consen 139 MIA-PIMLLAIKKAVTD-PSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--- 208 (968)
T ss_pred hHH-HHHHHHHHHHhcC-CcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc---
Confidence 111 0011112222233 5788999999999999765 555555443 5566778888999999999999888
Q ss_pred CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc---cChhhHHHH---------------------HhCCCHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY---GNQESKLII---------------------LASQGPV 292 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~---~~~~~~~~~---------------------~~~g~v~ 292 (986)
++. -.+. ++-...+.++|.+-++--|......|..-|. -+|..-... ...--+.
T Consensus 209 Per-ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~ 286 (968)
T KOG1060|consen 209 PER-LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLK 286 (968)
T ss_pred hhH-HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHH
Confidence 322 2333 4567778888876555555555555554443 111000000 0011123
Q ss_pred HHHH----HHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc-----
Q psy15604 293 ELVR----IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT----- 363 (986)
Q Consensus 293 ~L~~----ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~----- 363 (986)
.|++ ++++.+.. +.-++++++|.++... ...+.+.+|+++|.++. ++++..+..+..++.-.+
T Consensus 287 lLL~stkpLl~S~n~s-VVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 287 LLLQSTKPLLQSRNPS-VVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEP 358 (968)
T ss_pred HHHHhccHHHhcCCcH-HHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhh
Confidence 3333 33444544 6677889999887422 22344678888885532 223333333333322111
Q ss_pred ---ccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccc
Q psy15604 364 ---KVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLM 440 (986)
Q Consensus 364 ---~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 440 (986)
..-+..++...++..=..+|.+|+........+ +-+.....+.+- +.++.++.++.+.+ -
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~IL------rE~q~YI~s~d~--~faa~aV~AiGrCA---------~ 421 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEIL------RELQTYIKSSDR--SFAAAAVKAIGRCA---------S 421 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHH------HHHHHHHhcCch--hHHHHHHHHHHHHH---------H
Confidence 011222334456666777777776533333222 223344444433 23333332333110 0
Q ss_pred cccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy15604 441 FPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQL 520 (986)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 520 (986)
.. ..+....+..|+.++++.|..+..+++..+..|
T Consensus 422 ---------------------------------------~~------~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~L 456 (968)
T KOG1060|consen 422 ---------------------------------------RI------GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRL 456 (968)
T ss_pred ---------------------------------------hh------CchhhHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 00 001134478899999999999999999999999
Q ss_pred hhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccchhhhhccCChHHHHHhcCCCCHhHHHHHHH
Q psy15604 521 SKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAIT 599 (986)
Q Consensus 521 ~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~ 599 (986)
...++... ..++..|..++.+..-+..+....|.++..+.. +.. -...+..+.+-..+..+.++.+.+.
T Consensus 457 lq~~p~~h-----~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri-----~PDVLR~laksFs~E~~evKlQILn 526 (968)
T KOG1060|consen 457 LQKDPAEH-----LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI-----APDVLRKLAKSFSDEGDEVKLQILN 526 (968)
T ss_pred HhhChHHH-----HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-----chHHHHHHHHhhccccchhhHHHHH
Confidence 77665321 135666777775554556666666666665542 111 1222333444445566667766666
Q ss_pred HHHHhhcCC
Q psy15604 600 TLHNLLLHQ 608 (986)
Q Consensus 600 aL~nl~~~~ 608 (986)
.-..+-..+
T Consensus 527 L~aKLyl~~ 535 (968)
T KOG1060|consen 527 LSAKLYLTN 535 (968)
T ss_pred hhhhheEec
Confidence 555554433
No 74
>KOG3678|consensus
Probab=98.16 E-value=9e-05 Score=77.80 Aligned_cols=266 Identities=16% Similarity=0.125 Sum_probs=178.9
Q ss_pred hhHhhhCCchHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCC-CCHhHHHHHHHHHHHH
Q psy15604 155 RHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS-PVESVLFYAITTLHNL 232 (986)
Q Consensus 155 ~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L 232 (986)
.+.|...|| +..|+.++...+ ...+|..|...|-.+. ..+|++.++..| ...++.+.+. ..++.....+..|.++
T Consensus 173 CD~iR~~~~-lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGG-LDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccch-HHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 345555666 599999987632 3356888888777664 357888888877 5555555543 3567888999999999
Q ss_pred hcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHH
Q psy15604 233 LLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTS 311 (986)
Q Consensus 233 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~ 311 (986)
..+++.....+++.|++..++-..+..+|.+...++.+|.|.+. +..+.+..+++..+.+-|.-+..+. ++.++..+.
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHH
Confidence 99999999999999999999999999899999999999999986 5567888899999988888877776 455777777
Q ss_pred HHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHH-HHHHHHHhccc--ccccccccccCCchHHHHHHHHHHHHHhh
Q psy15604 312 RVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLV-QNCLWTLRNLS--DAGTKVSLLFNEIENIQRVAAGLLCELAQ 388 (986)
Q Consensus 312 ~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~-~~~~~~L~~ls--~~~~~i~ll~~~~~~~~~~a~~~L~~l~~ 388 (986)
-+...|+...+..+.+.+.|-+..+-.++.+.+|..- ..+-..-.+-. +-..++.++.+.-.+.|..++--|+.=+.
T Consensus 329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAa 408 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAA 408 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 7888888777776677777776666666655443211 00000000000 00012555554444444333333332221
Q ss_pred --Ch-hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH
Q psy15604 389 --DK-EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424 (986)
Q Consensus 389 --~~-~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~ 424 (986)
.. .--+.+.+-|+++.|.++..++++.....+..++
T Consensus 409 IKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseAL 447 (832)
T KOG3678|consen 409 IKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEAL 447 (832)
T ss_pred HHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11 2234566889999999999877765544555554
No 75
>KOG1062|consensus
Probab=98.15 E-value=0.0075 Score=68.66 Aligned_cols=442 Identities=14% Similarity=0.109 Sum_probs=245.5
Q ss_pred HHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhC
Q psy15604 209 ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS 288 (986)
Q Consensus 209 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~ 288 (986)
.|.+=|++++.-++..|+.+|++++ ..| ... ...|.+.++++..++-++..|+.|...+-...|+..+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~-s~E-mar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f--- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNIC-SPE-MAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF--- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccC-CHH-HhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh---
Confidence 3444466777778899999999998 433 332 235777788888889999999998888877777666554
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHhhh-CCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccc--ccccc
Q psy15604 289 QGPVELVRIMRSYDYEKLLWCTSRVLKVLSV-CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD--AGTKV 365 (986)
Q Consensus 289 g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~--~~~~i 365 (986)
++...++|...++. +...+...+..+.. +++.-..+.+ .++.++..| +++.. .++--
T Consensus 181 --~~~~~~lL~ek~hG-VL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iL---------------k~l~~~~yspey 240 (866)
T KOG1062|consen 181 --VIAFRKLLCEKHHG-VLIAGLHLITELCKISPDALSYFRD--LVPSLVKIL---------------KQLTNSGYSPEY 240 (866)
T ss_pred --hHHHHHHHhhcCCc-eeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHH---------------HHHhcCCCCCcc
Confidence 46666667666654 33334444433332 2222122222 444444443 22211 11112
Q ss_pred ccccCCchHHHHHHHHHHHHHhhCh-hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccc
Q psy15604 366 SLLFNEIENIQRVAAGLLCELAQDK-EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPET 444 (986)
Q Consensus 366 ~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 444 (986)
+.-.-.+|-+|....+.|.-+.+++ +....|.+ .|-+.....+.. +..--++
T Consensus 241 dv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdss-kN~GnAI--------------------- 293 (866)
T KOG1062|consen 241 DVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSS-KNAGNAI--------------------- 293 (866)
T ss_pred CccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhccccc-ccchhHH---------------------
Confidence 2223457888999999998888654 44444321 122222211100 0000000
Q ss_pred hhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcc
Q psy15604 445 LEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE 524 (986)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 524 (986)
+..++..+.....+..+..-++..|-++|.+.|..+++-|+..|......+
T Consensus 294 -----------------------------LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d 344 (866)
T KOG1062|consen 294 -----------------------------LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQD 344 (866)
T ss_pred -----------------------------HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCC
Confidence 111222222222222233445777888899999999999999988887666
Q ss_pred ccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHh
Q psy15604 525 ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604 (986)
Q Consensus 525 ~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl 604 (986)
..... ..=..++++|++. |..+++.|...+..|... .+...+ +..++.+|.+.+++++...+.-+..+
T Consensus 345 ~~avq-----rHr~tIleCL~Dp-D~SIkrralELs~~lvn~-~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 345 PTAVQ-----RHRSTILECLKDP-DVSIKRRALELSYALVNE-SNVRVM-----VKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred cHHHH-----HHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 53110 1123567788765 889999999888888764 333333 46788888888999999999999999
Q ss_pred hcCCCCChHHHHHhCcHHHHHHhhcCC----CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHh-----cCCh
Q psy15604 605 LLHQEGSKMAVRLAGGLQKMVLLLGRN----NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMR-----SYDY 675 (986)
Q Consensus 605 ~~~~~~~~~~v~~~g~v~~Lv~ll~~~----~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~ 675 (986)
+....+.+... +..+.+.+... ++++....... ++.+.++.... .+..|...+. .-+.
T Consensus 413 aEkfaP~k~W~-----idtml~Vl~~aG~~V~~dv~~nll~L---Ia~~~~e~~~y-----~~~rLy~a~~~~~~~~is~ 479 (866)
T KOG1062|consen 413 AEKFAPDKRWH-----IDTMLKVLKTAGDFVNDDVVNNLLRL---IANAFQELHEY-----AVLRLYLALSEDTLLDISQ 479 (866)
T ss_pred HHhcCCcchhH-----HHHHHHHHHhcccccchhhHHHHHHH---HhcCCcchhhH-----HHHHHHHHHhhhhhhhhhh
Confidence 97765544433 34555555542 23333332222 22221111111 1112222111 1223
Q ss_pred hHHHHHHHHHHHHhh----cC--CCCchhHHhcCcHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccchhchHHHH
Q psy15604 676 EKLLWCTSRVLKVLS----VC--SSNKPAIVEAGGMQALAMHLGHP--SQRLVQNCLWTLRNLSDAGTKVDGLESLLQSL 747 (986)
Q Consensus 676 ~~~~~~~~~~L~~Ls----~~--~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L 747 (986)
+.+..-+.|+++.-+ .+ .+....+-+..++..|..++.+. +..+..-++.+|-.|+..-... ..-++.+
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~---~~ri~~l 556 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS---SERIKQL 556 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc---HHHHHHH
Confidence 455667778877532 21 12223444456788888887653 4677777889999998433221 2223333
Q ss_pred -HHHhccCChhhHHHHHH
Q psy15604 748 -VQLLASQDINVITCAAG 764 (986)
Q Consensus 748 -~~ll~~~~~~i~~~a~~ 764 (986)
..+..+.+.++|..|..
T Consensus 557 I~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 557 ISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHhcccccHHHHHHHHH
Confidence 33444557777766554
No 76
>PF05536 Neurochondrin: Neurochondrin
Probab=98.13 E-value=0.0036 Score=72.12 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=118.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCc----chhHhhhCCchHHHHHHHHhcC------CCHHHHHHHHHHHHhh
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA----SRHAIMNSPQMVAALVHAISNS------NDLETTKGAVGTLHNL 191 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~----~~~~i~~~~~~i~~Lv~lL~~~------~~~~~~~~a~~~L~~l 191 (986)
.+..-+++|++.+++-|-.++.++.++....+ .++.+.+.-|. +-+-++|+++ +....+..|+.+|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~-~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGF-KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCh-hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35566788999887778888888888886543 24457776553 7777888763 2356888999999999
Q ss_pred ccCccch--HHHHhcCChHHHHHhhCCCCH-hHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Q psy15604 192 SHHRQGL--LAIFKSGGIPALVKLLSSPVE-SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT 268 (986)
Q Consensus 192 s~~~~~~--~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~ 268 (986)
+..|+.. ..++ +-||.|++.+.+.+. .+...|..+|..++ .++..++.+.+.|+++.|.+.+.+ ++.....+.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 9987654 4444 479999999988777 89999999999999 778899999999999999999977 556677777
Q ss_pred HHHHHHhc
Q psy15604 269 DCLQILAY 276 (986)
Q Consensus 269 ~aL~~La~ 276 (986)
.++.++..
T Consensus 161 ~lL~~Lls 168 (543)
T PF05536_consen 161 NLLLNLLS 168 (543)
T ss_pred HHHHHHHH
Confidence 88877754
No 77
>KOG1061|consensus
Probab=98.11 E-value=0.0055 Score=69.73 Aligned_cols=541 Identities=14% Similarity=0.080 Sum_probs=268.1
Q ss_pred CCCHHHHHHHHccCCHHHHHHH-HHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccc
Q psy15604 120 TRAIPELIKLLNDEDQVVVSQA-AMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQG 197 (986)
Q Consensus 120 ~g~i~~L~~ll~~~~~~~~~~a-~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~ 197 (986)
.|.++.+-.-+.+....-+..+ -++++.|....+.- +.++.+++.... .|.+.+..+-.-|.+.+.. |+.
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvS-------slF~dvvk~~~T-~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVS-------SLFPDVVKCMQT-RDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchH-------hhhHHHHhhccc-CCchHHHHHHHHHHHhhccCchH
Confidence 4455555555544444444444 34555565543221 245677776665 5788888888888888776 432
Q ss_pred hHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 198 LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 198 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
. .+++..++.=..++++.++..|++.++.+-.. . +. .-.+.+|.+.++++++-++..++.+...+-..
T Consensus 84 a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~---~---i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~ 151 (734)
T KOG1061|consen 84 A-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD---K---IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI 151 (734)
T ss_pred H-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh---H---HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC
Confidence 2 24566777767777888888887777655421 1 11 23467888888888888888888888887554
Q ss_pred ChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCC-hHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHh
Q psy15604 278 NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN-KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 356 (986)
Q Consensus 278 ~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~ 356 (986)
++ ....+.|.++.|-.++...++. +..+|+.+|..+.....+ .......-.+..++..+..-+.=-+...+..+.
T Consensus 152 ~~---~~~~~~gl~~~L~~ll~D~~p~-VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~ 227 (734)
T KOG1061|consen 152 DP---DLVEDSGLVDALKDLLSDSNPM-VVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLA 227 (734)
T ss_pred Ch---hhccccchhHHHHHHhcCCCch-HHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33 4556778888888888855544 667777888777643321 111111111222222222211111122222222
Q ss_pred ccccccc--c-------cccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHH
Q psy15604 357 NLSDAGT--K-------VSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIF 427 (986)
Q Consensus 357 ~ls~~~~--~-------i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~ 427 (986)
+...... . ...+...++.+...+...+.++...........-...-++|+.++.+.. ..+..+. .
T Consensus 228 ~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaL-----r 301 (734)
T KOG1061|consen 228 EYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVAL-----R 301 (734)
T ss_pred hcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHH-----h
Confidence 2211111 0 1122234445555666666666644333333444456777888887766 3333221 1
Q ss_pred hhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCH
Q psy15604 428 KIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQ 507 (986)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~ 507 (986)
+++..-.+ +-.++.. +..-+.+...++. .++.. -...+..+.+ +..+ ...+.++...-..-|.
T Consensus 302 Ni~lil~~-~p~~~~~---~~~~Ff~kynDPi---YvK~e------Kleil~~la~---~~nl-~qvl~El~eYatevD~ 364 (734)
T KOG1061|consen 302 NINLILQK-RPEILKV---EIKVFFCKYNDPI---YVKLE------KLEILIELAN---DANL-AQVLAELKEYATEVDV 364 (734)
T ss_pred hHHHHHHh-ChHHHHh---HhHeeeeecCCch---hhHHH------HHHHHHHHhh---HhHH-HHHHHHHHHhhhhhCH
Confidence 11110000 0000000 0000111111111 11110 0011112211 1111 1134555555556688
Q ss_pred HHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhc
Q psy15604 508 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLL 586 (986)
Q Consensus 508 ~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL 586 (986)
+...++++++++++..-... .+.|+.|++++....+- +..++...+..+-. .|.....++ +.+...+
T Consensus 365 ~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~~~vv-----~~l~~~~ 432 (734)
T KOG1061|consen 365 DFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKYESVV-----AILCENL 432 (734)
T ss_pred HHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCchhhhh-----hhhcccc
Confidence 88899999999996654322 37899999998754333 33445556666665 443333332 3333333
Q ss_pred CC-CCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHH
Q psy15604 587 SS-PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVE 665 (986)
Q Consensus 587 ~~-~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 665 (986)
.+ ++|+.+.+-+|.++.-+..-++.-.. +.-+++-+.++...|+-....+.-.+....|.....++. .
T Consensus 433 ~sl~epeak~amiWilg~y~~~i~~a~el------L~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~-----~ 501 (734)
T KOG1061|consen 433 DSLQEPEAKAALIWILGEYAERIENALEL------LESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQ-----G 501 (734)
T ss_pred cccCChHHHHHHHHHHhhhhhccCcHHHH------HHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHH-----H
Confidence 33 56788889999988877544432222 122333334455666665555555554444444433332 1
Q ss_pred HHH-HHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15604 666 LVR-IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 666 L~~-ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs 731 (986)
++. ...+.+..+++..+..--..|+.++.....++.+.- +.+-..-...++.+......=+..||
T Consensus 502 vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~k-P~is~~~~~~~p~~le~l~~~i~tls 567 (734)
T KOG1061|consen 502 VLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVLAEK-PLISEETDSLDPTLLEELLCDIGTLS 567 (734)
T ss_pred HHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHhcCC-CccccCCCCCCchHHHHHHHhhcccc
Confidence 222 223334456665554333345544332233332221 22222222244555555554444444
No 78
>KOG4413|consensus
Probab=98.11 E-value=0.0042 Score=62.84 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccc----hHHHHhcCChHHHH
Q psy15604 137 VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQG----LLAIFKSGGIPALV 211 (986)
Q Consensus 137 ~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~----~~~i~~~g~i~~Lv 211 (986)
-...+..+|..|-........+ +...+.|-.-|.. +|..++..++..+..+-.+ +.| -..++..|..+.++
T Consensus 59 kttlcVscLERLfkakegahla---pnlmpdLQrGLia-ddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 59 KTTLCVSCLERLFKAKEGAHLA---PNLMPDLQRGLIA-DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred hhhhHHHHHHHHHhhccchhhc---hhhhHHHHhcccC-CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 3344666676666443221111 1123444333443 5677888888777777666 322 24456889999999
Q ss_pred HhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHH--HHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCC
Q psy15604 212 KLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKM--VLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQ 289 (986)
Q Consensus 212 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g 289 (986)
......+.++-..|...|..++. .+..-..+.++.....+ ..+-...++-.+......+-.+.+-+++........|
T Consensus 135 dcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 99999999999999999999994 44444455544443332 2222233444444455556666666777778888888
Q ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhC
Q psy15604 290 GPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG 341 (986)
Q Consensus 290 ~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~ 341 (986)
.+..|..=++...+.-++..+......|+...+.++.+.+.|.++.+..++.
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIs 265 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIIS 265 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh
Confidence 8888887777655544666777777788877777777888888888877663
No 79
>KOG1061|consensus
Probab=98.10 E-value=0.0012 Score=75.03 Aligned_cols=145 Identities=20% Similarity=0.228 Sum_probs=106.7
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
+.++.+++...+.+.+.++..--- +.+ ....+-....+++..+++=..++++.+|..|.+.++.+-...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLY---l~n----Ya~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLY---LMN----YAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHH---HHH----hhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 456777777777777665543221 222 112223355667888888888999999999988887766542
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
+.+. ++.++.+.+++ +++.+|..++-...++ +..+.+...+.|.++.|..++.++++.+..+|+.+|..+...+
T Consensus 118 -i~ey--~~~Pl~~~l~d-~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 118 -ITEY--LCDPLLKCLKD-DDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred -HHHH--HHHHHHHhccC-CChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 2222 46888888887 6888998888777777 5556677788999999999999999999999999999999665
Q ss_pred CC
Q psy15604 237 EG 238 (986)
Q Consensus 237 ~~ 238 (986)
++
T Consensus 192 ~~ 193 (734)
T KOG1061|consen 192 PS 193 (734)
T ss_pred CC
Confidence 43
No 80
>KOG0915|consensus
Probab=98.09 E-value=0.021 Score=69.53 Aligned_cols=415 Identities=14% Similarity=0.086 Sum_probs=197.2
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHH--cCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL--AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKL 283 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~ 283 (986)
.||.|.+.=.+|+..++.....+...|. .+ .+..+.+ ......|+.-+.+...++++.+|.||..|-.+.+..+
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li-~D--~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~- 1074 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALI-TD--SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ- 1074 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhc-cC--hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH-
Confidence 5777777777788888877777666666 32 2222222 3456778888888899999999999999987544221
Q ss_pred HHHhCCCHHHHHHHHhcCCh--HHHHHHHHHHHHHhhh-C----C-CChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHH
Q psy15604 284 IILASQGPVELVRIMRSYDY--EKLLWCTSRVLKVLSV-C----S-SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTL 355 (986)
Q Consensus 284 ~~~~~g~v~~L~~ll~~~~~--~~~~~~a~~aL~~Ls~-~----~-~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L 355 (986)
......+....+++..++ +.+|+++-++...|+. + + .+. -.....+..++.++-++
T Consensus 1075 --~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~--~~~~~~l~~iLPfLl~~------------ 1138 (1702)
T KOG0915|consen 1075 --VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNG--AKGKEALDIILPFLLDE------------ 1138 (1702)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--ccHHHHHHHHHHHHhcc------------
Confidence 111222333444444433 5577766666555542 1 1 110 00111223333333221
Q ss_pred hcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccc
Q psy15604 356 RNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIH 435 (986)
Q Consensus 356 ~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~ 435 (986)
.++ +..++++..+...+..++......-+-.-...++.|.+.+..-.+.+-.+.+ +. ....
T Consensus 1139 ----------gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls----~r----~~~~ 1199 (1702)
T KOG0915|consen 1139 ----------GIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS----LR----LINI 1199 (1702)
T ss_pred ----------Ccc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH----Hh----hhhh
Confidence 112 6777888888888888875432211111122344444444433322211111 00 0000
Q ss_pred ccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHH
Q psy15604 436 RGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAM 515 (986)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 515 (986)
...++. +.-...+.. ......+-.+++.-|..+.+
T Consensus 1200 e~ealD--------------------t~R~s~aks---------------------spmmeTi~~ci~~iD~~vLe---- 1234 (1702)
T KOG0915|consen 1200 ETEALD--------------------TLRASAAKS---------------------SPMMETINKCINYIDISVLE---- 1234 (1702)
T ss_pred HHHHHH--------------------HHHHhhhcC---------------------CcHHHHHHHHHHhhhHHHHH----
Confidence 000000 000000000 01112222223333333322
Q ss_pred HHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--CccchhhhhccCChHHHHHhcCCCCHhH
Q psy15604 516 MVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGLLAIFKSGGIPALVKLLSSPVESV 593 (986)
Q Consensus 516 ~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~v 593 (986)
..+|.+.++++.+-.-..+..++..+..|+. ..+.+.. ....+..++..+++-++.+
T Consensus 1235 -------------------elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dRNesv 1293 (1702)
T KOG0915|consen 1235 -------------------ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDRNESV 1293 (1702)
T ss_pred -------------------HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccccHHH
Confidence 4556666666554334445555555555543 1111111 1223566777788889999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC
Q psy15604 594 LFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY 673 (986)
Q Consensus 594 ~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~ 673 (986)
+.+.+.+.+.++....+.+.. ..+..++..+-.+.+.....+|..+.+++...++.-....+ .+-++.-+-.+.
T Consensus 1294 ~kafAsAmG~L~k~Ss~dq~q----KLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~as--aILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKFSSPDQMQ----KLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYAS--AILPLIFLAMHE 1367 (1702)
T ss_pred HHHHHHHHHHHHhcCChHHHH----HHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHH--HHHHHHHHHHhH
Confidence 999999999999876543221 12344443332222222377888888876543322211121 122333333333
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhh-CCCCHHHHHHHHHHHHHhh
Q psy15604 674 DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL-GHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 674 ~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~al~~L~nLs 731 (986)
+.......=..+..-++.+......+....++-.++... .+.+-.++..+...++-++
T Consensus 1368 e~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1368 EEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 211111000111123444443333333334444444443 3444677888888887766
No 81
>KOG1060|consensus
Probab=98.02 E-value=0.019 Score=65.18 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=110.1
Q ss_pred HHHHhhCCCCHhHHHHHH-HHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHh
Q psy15604 209 ALVKLLSSPVESVLFYAI-TTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 287 (986)
Q Consensus 209 ~Lv~lL~~~~~~~~~~a~-~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~ 287 (986)
-|.++|.+..+..+..|. ++++-++.+ .+. ...+|.+++...+.+.+++...---|...|...++..-
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G-~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL---- 107 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG-KDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL---- 107 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC-CcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----
Confidence 577889888777777666 455555643 331 34578888989889988888776667666664443211
Q ss_pred CCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccc---
Q psy15604 288 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--- 364 (986)
Q Consensus 288 ~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~--- 364 (986)
=.+..+-+-|+.++.. ++.-|+++|..+ +-.++..-.+-.+-+...++++.++..++-++..+-.-++.
T Consensus 108 -LSIntfQk~L~DpN~L-iRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 108 -LSINTFQKALKDPNQL-IRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred -eeHHHHHhhhcCCcHH-HHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 1345666667776654 665555554332 22233333344455566888899999888888887443322
Q ss_pred ------cccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCc
Q psy15604 365 ------VSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRN 413 (986)
Q Consensus 365 ------i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~ 413 (986)
-.+|...++-+...|+.++..+|-+ .-+.+ ++-...|++++-+-+
T Consensus 180 qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dvd 230 (968)
T KOG1060|consen 180 QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDVD 230 (968)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccchh
Confidence 2344456666777777777766532 22222 234566777776543
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.00 E-value=0.00062 Score=74.97 Aligned_cols=211 Identities=12% Similarity=-0.032 Sum_probs=151.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
+..++..+.+.++.++..++.+|+.+-. +...+.|..+|++. ++.++..++.++...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~-~p~vR~aal~al~~r----------- 144 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAAS-EPPGRAIGLAALGAH----------- 144 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCC-ChHHHHHHHHHHHhh-----------
Confidence 7888899999999999999999975432 35678888888654 788888777666652
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
.....+.+..+|+++++.++..|+.+|+.+. ....++.|...+.+.++.|+..+.+++..+...
T Consensus 145 ~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~----- 208 (410)
T TIGR02270 145 RHDPGPALEAALTHEDALVRAAALRALGELP-----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSR----- 208 (410)
T ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc-----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-----
Confidence 2235678999999999999999999999887 345677788889999999999999999766431
Q ss_pred HHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q psy15604 655 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG 734 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~ 734 (986)
..+..+..+....... .......++... .. ..+++.|..+++.+. ++..++++++.+-+
T Consensus 209 ------~A~~~l~~~~~~~g~~-~~~~l~~~lal~---~~-------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-- 267 (410)
T TIGR02270 209 ------LAWGVCRRFQVLEGGP-HRQRLLVLLAVA---GG-------PDAQAWLRELLQAAA--TRREALRAVGLVGD-- 267 (410)
T ss_pred ------hHHHHHHHHHhccCcc-HHHHHHHHHHhC---Cc-------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC--
Confidence 2344555433333322 212222222222 11 146777888887654 88999999997743
Q ss_pred ccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCc
Q psy15604 735 TKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGV 773 (986)
Q Consensus 735 ~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~ 773 (986)
...++.|+..+.+. .++..|.++++.|+.-.
T Consensus 268 ------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 268 ------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred ------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 56778888888654 49999999999877643
No 83
>KOG0212|consensus
Probab=97.99 E-value=0.0035 Score=68.24 Aligned_cols=269 Identities=14% Similarity=0.105 Sum_probs=154.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh----CCccchh
Q psy15604 496 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS----HHRQGLL 571 (986)
Q Consensus 496 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls----~~~~~~~ 571 (986)
|.|-.-+...++.+|...+.-+..+-..+. ..-+---+.+.+.|+.+|.++ +++++..+-.++.++- +.|...
T Consensus 170 pLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~- 246 (675)
T KOG0212|consen 170 PLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSM- 246 (675)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCcccc-
Confidence 333333445577777766666666543332 222222246788888988665 7788876665555543 333321
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHh-HHH---HHHHHHHHHh
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVK-FLA---IVTDCLQILA 647 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~-v~~---~a~~aL~~L~ 647 (986)
--...++.++..+.++++.++..|+..+..+..-.+. .-...-.|++..++.++.++.+. +.. ..-.-+..++
T Consensus 247 --d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 247 --DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred --CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 2356788999999999999999999999998865543 22233467777777777765543 222 2222333343
Q ss_pred cCCcccHHHHHhC-CChHHHHHHHhcCChhHHHHHH-HHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHH
Q psy15604 648 YGNQESKLIILAS-QGPVELVRIMRSYDYEKLLWCT-SRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLW 725 (986)
Q Consensus 648 ~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~-~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~ 725 (986)
.. +..+.. ++- ..+..+.+.+.+.. ++.+-++ -|+...... ..++-..........|..-+.+.+..+...++.
T Consensus 324 s~-~~~~~~-id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~-~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 324 SS-ERLKEE-IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHK-APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred hh-hhhccc-cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhh-CcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 32 222222 222 23555555666555 4443343 344333333 333333333456778888889999999999999
Q ss_pred HHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 726 TLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 726 ~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
.+.+++..+... ..-.++..|+.+......-+...+.-++. |.|.++|.
T Consensus 400 lla~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIR--------qlC~lL~a 448 (675)
T KOG0212|consen 400 LLASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIR--------QLCLLLNA 448 (675)
T ss_pred HHHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHH--------HHHHHhCH
Confidence 999999544332 22344455555554444444444444443 55555554
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.98 E-value=0.00085 Score=73.94 Aligned_cols=118 Identities=17% Similarity=0.072 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHh
Q psy15604 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 158 (986)
Q Consensus 79 i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i 158 (986)
+..|+..+...+..++..++.+|..+ ...++.+.|..+|+++++.++..++.++.....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-------------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL-------------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC-------------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------
Confidence 45555555555444544444444322 112344555555555555555555444443110
Q ss_pred hhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHH
Q psy15604 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 232 (986)
. ..+.+..+|++ +|+.++..|+.+|..+- ....++.|...+.+.+++++..|+.++..+
T Consensus 147 ---~-~~~~L~~~L~d-~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 147 ---D-PGPALEAALTH-EDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ---C-hHHHHHHHhcC-CCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 0 12455555553 45555555555555542 123444455555555555555555555444
No 85
>KOG1242|consensus
Probab=97.94 E-value=0.013 Score=65.41 Aligned_cols=220 Identities=13% Similarity=0.086 Sum_probs=136.6
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHH
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAI 201 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 201 (986)
.+..|..-+..+++.+++....+|..+.......... -+.+.+.+++.. .+...+..++..++.+..+ -....+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~----~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g-~~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE----YVLELLLELLTS-TKIAERAGAAYGLAGLVNG-LGIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH----HHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcC-cHHhhh
Confidence 4566777777888899999888888777543222111 134666777774 6788899999999988666 334455
Q ss_pred HhcCChHHHHHhhCCCCHhHHHH-HHHH----HHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 202 FKSGGIPALVKLLSSPVESVLFY-AITT----LHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 202 ~~~g~i~~Lv~lL~~~~~~~~~~-a~~~----L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
.+.+.+..|.....+........ +..+ ..+|....+.+- --.+|.++..+.+....++..+..+...+..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi-----v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI-----VPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH-----HhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 66778888888887654333221 2222 223331112111 1234555555566777888888777776643
Q ss_pred c-ChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHH
Q psy15604 277 G-NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTL 355 (986)
Q Consensus 277 ~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L 355 (986)
. +...... .++.++.-+....+. .+.+++..|..++.+...+-.......+|.+.+.|.+..++++.++..+|
T Consensus 246 ~~~~~aVK~-----llpsll~~l~~~kWr-tK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 246 CLSAYAVKL-----LLPSLLGSLLEAKWR-TKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred hcCcchhhH-----hhhhhHHHHHHHhhh-hHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 1 1111111 234444444333333 55677888888888888777788889999999999887776666655555
Q ss_pred hcc
Q psy15604 356 RNL 358 (986)
Q Consensus 356 ~~l 358 (986)
.++
T Consensus 320 ~~~ 322 (569)
T KOG1242|consen 320 LKF 322 (569)
T ss_pred HHH
Confidence 554
No 86
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.042 Score=60.15 Aligned_cols=245 Identities=17% Similarity=0.123 Sum_probs=138.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
.|-|-..+++.-..++.++++.+..++...-. ...+. ..+..|-.+|++. ....+..|.++|..++.....+-.+
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~~--~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~v- 340 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFVD--QTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSV- 340 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHHH--HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeee-
Confidence 44455566676688888899888887665421 11221 3455566666554 6788999999999998843322111
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
+=+.+-.+..+.+..+-.+|+.+|..-.. ++.-+ ..+..+...+.+-++.+...+..+++.|+..-|.-+
T Consensus 341 ---cN~evEsLIsd~Nr~IstyAITtLLKTGt--~e~id-----rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 341 ---CNKEVESLISDENRTISTYAITTLLKTGT--EETID-----RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred ---cChhHHHHhhcccccchHHHHHHHHHcCc--hhhHH-----HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 12344456667777788888877765431 11111 112233333333355566667788888887655444
Q ss_pred HHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCCchhHHhcCcHHHHHHhhCCCC-HHHHHHHHHHHHHhhc
Q psy15604 655 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-SSNKPAIVEAGGMQALAMHLGHPS-QRLVQNCLWTLRNLSD 732 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-~~~~~~l~~~g~~~~L~~ll~~~~-~~v~~~al~~L~nLs~ 732 (986)
..++ ..|...|.+...-+.......++.-+-.. |+.+. -+++.|+.++.+.. +.+. ++.|+-|..
T Consensus 411 ~s~l-----~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~---vrIL~iLG~ 477 (898)
T COG5240 411 LSYL-----DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQIT---VRILGILGR 477 (898)
T ss_pred HHHH-----HHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHH---HHHHHHhcc
Confidence 4433 35555454432223334444455444332 33332 24566777775432 4444 444444455
Q ss_pred ccccccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 733 AGTKVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 733 ~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
+.++...-...+..+..-+--++..+|..|..+|+
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLs 512 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALS 512 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55544444455556655555567889999999987
No 87
>KOG1077|consensus
Probab=97.93 E-value=0.056 Score=60.71 Aligned_cols=316 Identities=14% Similarity=0.104 Sum_probs=178.7
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhccChhhHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN--NVKFLAIVTDCLQILAYGNQESKL 283 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~aL~~La~~~~~~~~ 283 (986)
++..+..=|.+.++.-+..|+.+++|+. +.+ .+.++. .-|+ ++|.+. .+-++..++.+|..|-..+|+..
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG-~re-~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIG-SRE-MAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhc-cHh-HHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 3445555567778888889999999998 332 333332 2233 566553 35677778888877876555432
Q ss_pred HHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc
Q psy15604 284 IILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT 363 (986)
Q Consensus 284 ~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~ 363 (986)
-..+..+.++.+|...+.. +..++...+..|+..........-.-++..|...........+.
T Consensus 184 --~~~~W~~riv~LL~D~~~g-v~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qd-------------- 246 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMG-VVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQD-------------- 246 (938)
T ss_pred --ChhhHHHHHHHHhCccccc-eeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhh--------------
Confidence 2335678888888876654 44455555555553221111111111122222222111000000
Q ss_pred ccccccCCchHHHHHHHHHHHHHhhCh--hhHHHHHhcCCcHHHHHHhccCch--hHHHHHHHHHHHHhhcccccccccc
Q psy15604 364 KVSLLFNEIENIQRVAAGLLCELAQDK--EGAETIEAEGATAPLTDLLHSRNE--GVEILIQGVHKIFKIHKINIHRGCL 439 (986)
Q Consensus 364 ~i~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~l~~Lv~ll~~~~~--~~~~~~~~~~al~~~~~~~~~~~~~ 439 (986)
-..-.-+.|-++...+++|.++...+ ..+..+. ..++.++...+.... .++..-+.-.-
T Consensus 247 -YTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naV-------------- 309 (938)
T KOG1077|consen 247 -YTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAV-------------- 309 (938)
T ss_pred -ceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHH--------------
Confidence 00011356788888888888876433 3333332 233444433332111 11110000000
Q ss_pred ccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy15604 440 MFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ 519 (986)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 519 (986)
+-.++.-.+.+.....+-..++..|.+++.+....+|..|...+..
T Consensus 310 ----------------------------------LFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~ 355 (938)
T KOG1077|consen 310 ----------------------------------LFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCK 355 (938)
T ss_pred ----------------------------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Confidence 0011111112222333335567888889999999999999999999
Q ss_pred hhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHH
Q psy15604 520 LSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAIT 599 (986)
Q Consensus 520 l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~ 599 (986)
++..+....++-.. .+.++..|+...|..+++.++..|+.+|.. ++.+.| +..+++.|.+-+..+++.-+.
T Consensus 356 L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~I-----V~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 356 LASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQI-----VAELLQYLETADYSIREEIVL 426 (938)
T ss_pred HHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHH-----HHHHHHHHhhcchHHHHHHHH
Confidence 98887766666543 677888898788999999999999999863 344443 467788888888888876655
Q ss_pred HHHHhhc
Q psy15604 600 TLHNLLL 606 (986)
Q Consensus 600 aL~nl~~ 606 (986)
-..-|+.
T Consensus 427 KvAILaE 433 (938)
T KOG1077|consen 427 KVAILAE 433 (938)
T ss_pred HHHHHHH
Confidence 5555543
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.91 E-value=0.0055 Score=66.87 Aligned_cols=232 Identities=14% Similarity=0.163 Sum_probs=159.5
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHH-HHHh-cCCCHHHHHHHHHHHHhhccCccchH
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV-HAIS-NSNDLETTKGAVGTLHNLSHHRQGLL 199 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv-~lL~-~~~~~~~~~~a~~~L~~ls~~~~~~~ 199 (986)
..+.+..++=+++++++..+.+++..+..++..-..+.+.+ + +.++ ..|. +.....-|+.|...+..+..-+.+..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~-i-d~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLH-I-DIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcC-C-chhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 44555555556669999999999999999888777777765 2 4433 3444 33567788999998888766544433
Q ss_pred HHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccCh
Q psy15604 200 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 279 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~ 279 (986)
. +..|++..++.+....++..+..|+.+|+.++..+| ..+...||+..|++.+.++........+.++..+-. +|
T Consensus 104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p 178 (371)
T PF14664_consen 104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SP 178 (371)
T ss_pred c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Cc
Confidence 3 366889999999999999999999999999997665 567789999999999987555555555555555544 67
Q ss_pred hhHHHHHhCCCHHHHHHHHhcC------ChH--HHHHHHHHHHHHhhhCCCChHHHH--HhccHHHHHHHhCCCCHHHHH
Q psy15604 280 ESKLIILASQGPVELVRIMRSY------DYE--KLLWCTSRVLKVLSVCSSNKPAIV--EAGGMQALAMHLGHPSQRLVQ 349 (986)
Q Consensus 280 ~~~~~~~~~g~v~~L~~ll~~~------~~~--~~~~~a~~aL~~Ls~~~~~~~~i~--~~g~l~~L~~ll~~~~~~~~~ 349 (986)
..|..+...--++.++.-+... +.. .....+..++..+-.+-..--.+. +..++..|+..|..++++++.
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 7888776666666666655443 111 133344444444432221111111 225788899999999999888
Q ss_pred HHHHHHhcccc
Q psy15604 350 NCLWTLRNLSD 360 (986)
Q Consensus 350 ~~~~~L~~ls~ 360 (986)
..+..+..+-.
T Consensus 259 ~Ildll~dllr 269 (371)
T PF14664_consen 259 AILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHC
Confidence 88887776633
No 89
>KOG1077|consensus
Probab=97.87 E-value=0.086 Score=59.34 Aligned_cols=143 Identities=14% Similarity=0.132 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHh
Q psy15604 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 158 (986)
Q Consensus 79 i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i 158 (986)
-..-+++|++.-..++...-..+..|.+ . +.+.+ .-++..+.+=|.+.|+.-...|+.+++|+... +.++.+
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n---~--n~dl~--klvin~iknDL~srn~~fv~LAL~~I~niG~r-e~~ea~ 147 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLN---E--NSDLM--KLVINSIKNDLSSRNPTFVCLALHCIANIGSR-EMAEAF 147 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHh---c--chHHH--HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH-hHHHHh
Confidence 3445677777666665543333333433 1 11111 11345566677788899999999999998865 344444
Q ss_pred hhCCchHHHHHHHHhcCC-CHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 159 MNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
... |+ ++|.+++ ..-+++.|+.+|.+|-+. |+. +-..+....++.+|.+.+-.+...+...+--++..+
T Consensus 148 ~~D---I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 148 ADD---IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN 218 (938)
T ss_pred hhh---hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC
Confidence 332 24 5565543 356788888888888665 331 112245668889998888777777777777777665
Q ss_pred CC
Q psy15604 237 EG 238 (986)
Q Consensus 237 ~~ 238 (986)
++
T Consensus 219 p~ 220 (938)
T KOG1077|consen 219 PE 220 (938)
T ss_pred CH
Confidence 53
No 90
>KOG1059|consensus
Probab=97.86 E-value=0.0065 Score=68.11 Aligned_cols=207 Identities=17% Similarity=0.127 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
.+.++.+|++ +-+-+|..|..+|..+... |+. +. -++|.|++-|.++|+.++..|+..++.|+..+|.+--.
T Consensus 146 a~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 146 ADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 3566677777 5788999999999988665 432 21 37899999999999999999999999999888755432
Q ss_pred HHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCC
Q psy15604 244 RLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 322 (986)
Q Consensus 244 ~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~ 322 (986)
.-|.+.++|.+ .+--+........++|+--.|.... ..+++|..++.+.....+.+-+....-.-+...+
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 34777888854 3434445555666666654443333 4579999999887655566655444322221111
Q ss_pred --ChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccc---------cccccCCchHHHHHHHHHHHHHhh
Q psy15604 323 --NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK---------VSLLFNEIENIQRVAAGLLCELAQ 388 (986)
Q Consensus 323 --~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~---------i~ll~~~~~~~~~~a~~~L~~l~~ 388 (986)
+....+ .-+++.|-.++.+.++.+.+-.+-+++.+....+. +..|...++.++..|...|..+..
T Consensus 290 ~~d~~asi-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 290 MSDHSASI-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CCCcHHHH-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 111111 12455566666676666666666666666554432 556666777777777777766653
No 91
>PRK14707 hypothetical protein; Provisional
Probab=97.84 E-value=0.22 Score=63.14 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=109.6
Q ss_pred CCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHH-HHhcccCcchhHhhhCCchHHHHHHHHhcCC-CHHHHHHHHHH
Q psy15604 110 DEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMV-HQLSKKEASRHAIMNSPQMVAALVHAISNSN-DLETTKGAVGT 187 (986)
Q Consensus 110 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L-~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~ 187 (986)
+..-++.+-..+.-..|-.+-+..+..+...++..| ..|..++..+..+-..+ +...++.|++=+ +..++..|...
T Consensus 279 ~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~--~~~~LNalsKWpd~~~C~~Aa~~L 356 (2710)
T PRK14707 279 DPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG--LSTALNALSKWPDNPVCAAAVSAL 356 (2710)
T ss_pred hHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH--HHHHHHHhhcCCCchhHHHHHHHH
Confidence 333333333333334455555667766666555544 55778777776665443 466777776533 45666666666
Q ss_pred HHhhccCccchHHHHhcCChHHHHHhh-CCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHHHHH
Q psy15604 188 LHNLSHHRQGLLAIFKSGGIPALVKLL-SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLA 265 (986)
Q Consensus 188 L~~ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~ 265 (986)
-..++.+++-+..+--. ++...++-| +=++......++..|..-..++.+.++.+... ++...+.-|.. ++.....
T Consensus 357 A~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~ 434 (2710)
T PRK14707 357 AERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICG 434 (2710)
T ss_pred HHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHH
Confidence 66777777766665444 444444444 44666677777777765555888788877644 45555555544 6666666
Q ss_pred HHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhc
Q psy15604 266 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRS 300 (986)
Q Consensus 266 ~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~ 300 (986)
.++.+|..-..++.+.+..+--.+ |...+..++.
T Consensus 435 ~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSK 468 (2710)
T PRK14707 435 QAVSALAGRLAHDTELCKALDPIN-VTQALDALSK 468 (2710)
T ss_pred HHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhc
Confidence 777777655555777776653333 3344444443
No 92
>KOG2973|consensus
Probab=97.83 E-value=0.0014 Score=66.05 Aligned_cols=261 Identities=16% Similarity=0.149 Sum_probs=166.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
...+++++.+.+|.++..|+..+..++.. ..+...-.+...++.+.+++... .+ .+.|+.+|.|++....-++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 55788899999999999999988888666 22222222235677788887554 22 6678889999999888888887
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHH------hCcHHHHHHhhcCC-C-HhHHHHHHHHHHHH
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL------AGGLQKMVLLLGRN-N-VKFLAIVTDCLQIL 646 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~------~g~v~~Lv~ll~~~-~-~~v~~~a~~aL~~L 646 (986)
+. .+..++.++.++....-...+..|.|++.+.......... .|.+.......+++ + ..-....+-.+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 7788888888877778888889999999887665544332 33333333444443 2 12234556678888
Q ss_pred hcCCcccHHHHHhCCCh--HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhh------------
Q psy15604 647 AYGNQESKLIILASQGP--VELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL------------ 712 (986)
Q Consensus 647 ~~~~~~~~~~~~~~~~~--~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll------------ 712 (986)
++. +.+|..+...... +.++. +.+++....+....+.+.|.+....++..++. .....|..+|
T Consensus 160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccCHH
Confidence 876 5677777665521 12221 22334344556677888888887777766666 3333333322
Q ss_pred -----------------CCCCHHHHHHHHHHHHHhhcc--cccccchhchHHHHHHHhcc-CChhhHHHHH
Q psy15604 713 -----------------GHPSQRLVQNCLWTLRNLSDA--GTKVDGLESLLQSLVQLLAS-QDINVITCAA 763 (986)
Q Consensus 713 -----------------~~~~~~v~~~al~~L~nLs~~--~~~~~~~~~~l~~L~~ll~~-~~~~i~~~a~ 763 (986)
+.+++.++.-.+.+|--|+.. +.+.....|+-+.+..+-.. +++++++.+-
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace 307 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACE 307 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHH
Confidence 135688998888888888732 23334444555555554333 3666665433
No 93
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.82 E-value=1.8e-05 Score=55.69 Aligned_cols=39 Identities=44% Similarity=0.497 Sum_probs=36.9
Q ss_pred ccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhh
Q psy15604 567 RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 605 (986)
Q Consensus 567 ~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 605 (986)
++++..+++.|++|.|+++|+++++++++.|+|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999999997
No 94
>KOG1242|consensus
Probab=97.82 E-value=0.0097 Score=66.28 Aligned_cols=389 Identities=15% Similarity=0.071 Sum_probs=231.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHH
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 244 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 244 (986)
+..-+.|++..+..++..-...-..++.+ ........ ..++.+...++.+.++++.....+|..+........
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~--~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---- 131 (569)
T KOG1242|consen 58 PCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPI--SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---- 131 (569)
T ss_pred HHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchh--HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----
Confidence 33334455444445555555444444444 22222221 257788888999999999999999877773322111
Q ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCCh
Q psy15604 245 LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 324 (986)
Q Consensus 245 ~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~ 324 (986)
..-..+.+.++++......+.-+...++.+..+. .-..+.+.+.+..+-+.++.......++.+..+.......-+
T Consensus 132 ~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-- 207 (569)
T KOG1242|consen 132 GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-- 207 (569)
T ss_pred HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC--
Confidence 1224667788888777778888888888887644 334466777888888888876654344433333333332222
Q ss_pred HHHHHhccHHHHHHHh---CCCCHHHHHHHHHHH----hcccccccc---ccccc---CCchHHHHHHHHHHHHHhhChh
Q psy15604 325 PAIVEAGGMQALAMHL---GHPSQRLVQNCLWTL----RNLSDAGTK---VSLLF---NEIENIQRVAAGLLCELAQDKE 391 (986)
Q Consensus 325 ~~i~~~g~l~~L~~ll---~~~~~~~~~~~~~~L----~~ls~~~~~---i~ll~---~~~~~~~~~a~~~L~~l~~~~~ 391 (986)
...+.+.++.+-.++ .+..+.++..+..+. +.++..+.. ..++. ...=..+..++..+..++....
T Consensus 208 -~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 208 -PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred -CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 123334444444444 455556665433333 233333321 11111 1122345677788888877667
Q ss_pred hHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCc
Q psy15604 392 GAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPS 471 (986)
Q Consensus 392 ~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 471 (986)
.+-.......+|.+...+.+....++.....++ -+++..-. + ....+..++++..++.|+
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l--~~~~svid--------N----------~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL--LKFGSVID--------N----------PDIQKIIPTLLDALADPS 346 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH--HHHHHhhc--------c----------HHHHHHHHHHHHHhcCcc
Confidence 777777888999999999999999888666555 22211100 0 001245678888888888
Q ss_pred HHHHHHHHHHhcCCchhhhhcCCHHHHHH----HhcCCCHHHHHHHHHHHHHhhhccc---cchhhhcccCcHHHHHHhh
Q psy15604 472 QMLKHAVVNLINYQDDADLATRAIPELIK----LLNDEDQVVVSQAAMMVHQLSKKEA---SRHAIMNSPQMVAALVHAI 544 (986)
Q Consensus 472 ~~~~~a~~~l~~~~~~~~~~~~~i~~L~~----ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~l~~~~~~i~~L~~lL 544 (986)
.....++..|.....-..++...+..++. -+...+..+...++.++.|+++--. ....++. .++|.+-..+
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~--~Llp~lk~~~ 424 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP--SLLPGLKENL 424 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH--HHhhHHHHHh
Confidence 66777777776655433333444444444 4445577788889999999976542 3333332 4666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCH
Q psy15604 545 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVE 591 (986)
Q Consensus 545 ~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 591 (986)
... .|++|..++.+|+.+-....... ..+.+|.+...+.++..
T Consensus 425 ~d~-~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~~~k~ 467 (569)
T KOG1242|consen 425 DDA-VPEVRAVAARALGALLERLGEVS---FDDLIPELSETLTSEKS 467 (569)
T ss_pred cCC-ChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhccchh
Confidence 665 89999999999987754211111 15566766666655433
No 95
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00038 Score=74.74 Aligned_cols=183 Identities=14% Similarity=0.019 Sum_probs=140.5
Q ss_pred HHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHH
Q psy15604 600 TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLL 679 (986)
Q Consensus 600 aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 679 (986)
.|-.+...-.-.|.-+.+..+++.|+++|..+...+...+...+.|+.-.-..-+..+++.+.+..|+.++.+.| ..++
T Consensus 412 ~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD-daLq 490 (743)
T COG5369 412 FLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD-DALQ 490 (743)
T ss_pred HHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch-hhhh
Confidence 334444333334555566778899999999988888888888899988766667778888899999999998776 5677
Q ss_pred HHHHHHHHHhhcCCCC--chhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhccc-c---------cccchhchHHHH
Q psy15604 680 WCTSRVLKVLSVCSSN--KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG-T---------KVDGLESLLQSL 747 (986)
Q Consensus 680 ~~~~~~L~~Ls~~~~~--~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~-~---------~~~~~~~~l~~L 747 (986)
....|++..+..+..+ +-.++..-++..++.+...+.-.++..++..|||+.... . ++.-..-+...|
T Consensus 491 ans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l 570 (743)
T COG5369 491 ANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRL 570 (743)
T ss_pred hcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHH
Confidence 8889999988655332 345666678899999999999999999999999998322 1 122233577788
Q ss_pred HHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 748 VQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 748 ~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
..-+++.+|-...+.|.+|-|+++.+++.-+.++..
T Consensus 571 ~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 571 IDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred HHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 888888888888888999999999998877776644
No 96
>KOG0211|consensus
Probab=97.68 E-value=0.076 Score=62.68 Aligned_cols=494 Identities=13% Similarity=0.082 Sum_probs=270.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc-CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 202 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 202 (986)
+.+-.+.......++.+++..+...+.. +.... .+ .+-+++..+..++-...+..++...+..+..-.. ..+
T Consensus 162 ~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~--~~---~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~v 234 (759)
T KOG0211|consen 162 PPLELLATVEETGVREKAVESLLKVAVGLPKEKL--RE---HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAV 234 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--HH---HHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHH
Confidence 4444444455566788888888776642 21111 11 1234444444433334566666666666554221 233
Q ss_pred hcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc--cChh
Q psy15604 203 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY--GNQE 280 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~--~~~~ 280 (986)
+...-+..-++.+...+.++..++.-+++++.. ........+.++.+.++..++.+.++..+...+.++.. ..+.
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 444455666777778888999999999998843 33467778899999999998888999988888877753 2221
Q ss_pred hHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccc
Q psy15604 281 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 360 (986)
Q Consensus 281 ~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~ 360 (986)
=......+.++.....++.. +++......+.|+..-+. ......-.+.....+++..
T Consensus 312 ----d~~~~~~~~l~~~~~d~~~~-v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~---------------- 368 (759)
T KOG0211|consen 312 ----DVVKSLTESLVQAVEDGSWR-VSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEE---------------- 368 (759)
T ss_pred ----hhhhhhhHHHHHHhcChhHH-HHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchh----------------
Confidence 11223457777777776654 666666665555421111 1111222334444443322
Q ss_pred cccccccccCCchHHHHHHHHHHHHHhh--ChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccc
Q psy15604 361 AGTKVSLLFNEIENIQRVAAGLLCELAQ--DKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGC 438 (986)
Q Consensus 361 ~~~~i~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 438 (986)
.+.+...+.-...++. +.+....+.....++.+..+..+.+..++.+.+... ... .
T Consensus 369 ------------~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~-----~~~-----~ 426 (759)
T KOG0211|consen 369 ------------WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI-----TGL-----S 426 (759)
T ss_pred ------------hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc-----ccc-----C
Confidence 2233333333333332 224445555556688888888888877766444221 000 0
Q ss_pred cccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15604 439 LMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVH 518 (986)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 518 (986)
.+++ ... . + ..-.|.++..+++.++.++......+.
T Consensus 427 p~~~-------------k~~------------------t----i---------~~llp~~~~~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 427 PILP-------------KER------------------T----I---------SELLPLLIGNLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred ccCC-------------cCc------------------C----c---------cccChhhhhhcchhhHHHHHhhHHHHH
Confidence 0000 000 0 0 222677777888888998888777665
Q ss_pred Hhhhcccc--chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHH
Q psy15604 519 QLSKKEAS--RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 596 (986)
Q Consensus 519 ~l~~~~~~--~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~ 596 (986)
.+-..... ...+. ...++.+..+-... ...++.+..+.+..++.... ..+++...-+.+..-+.+...++++.
T Consensus 463 ~~~~v~~v~g~~~~s--~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVS--NSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred HHHhccCcccchhhh--hhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHH
Confidence 55333322 22222 24566666654322 45566666666666655322 22222223333333455556688888
Q ss_pred HHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChh
Q psy15604 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYE 676 (986)
Q Consensus 597 a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 676 (986)
|+..+..++.... ...-+ ...++.++.....++-..+.....++.-|+. -.-..+.....++.+.++..++. .
T Consensus 538 aa~~l~~l~~~~G--~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~v-a 610 (759)
T KOG0211|consen 538 AARNLPALVETFG--SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPV-A 610 (759)
T ss_pred HHHHhHHHHHHhC--cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCc-h
Confidence 8888888875543 11121 3446666666655556666666666665543 11113333456667777666665 5
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15604 677 KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 677 ~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nL 730 (986)
+++..++..|.-+-.. ......+..+.+.+..+..+++.+++..|.-+..-+
T Consensus 611 nVR~nvak~L~~i~~~--L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKL--LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred hhhhhHHHHHHHHHhh--cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 5666666555544322 113444444555666666666667776665554433
No 97
>PRK14707 hypothetical protein; Provisional
Probab=97.64 E-value=0.43 Score=60.71 Aligned_cols=272 Identities=13% Similarity=0.105 Sum_probs=144.5
Q ss_pred CCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCcc
Q psy15604 120 TRAIPELIKLLND--EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQ 196 (986)
Q Consensus 120 ~g~i~~L~~ll~~--~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~~a~~~L~~ls~~~~ 196 (986)
..-+..|+..++. ++...+..+..+-.-++..+..+..+-.. + |..+++.+.+= +++.++..+...-..++..+.
T Consensus 162 ~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q-~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~ 239 (2710)
T PRK14707 162 AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQ-G-VATVLNALCKWPDTPDCGNAVSALAERLADESR 239 (2710)
T ss_pred cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchH-H-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHH
Confidence 3345556665553 46677777777777788888777777544 3 57777777643 456666666655555555544
Q ss_pred chHHHHhcCChHHHHHhh-CCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q psy15604 197 GLLAIFKSGGIPALVKLL-SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQIL 274 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~L 274 (986)
-+..+ +.-+|...++.| +-++......++.+|..-...+...++++. ...+...+.-|.. .+..+...++..|..=
T Consensus 240 l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~r 317 (2710)
T PRK14707 240 LRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIALAER 317 (2710)
T ss_pred HHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 44444 444444444444 456666677777777554435555555554 2334444444433 5545555555444433
Q ss_pred hccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHH-HHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHH
Q psy15604 275 AYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVL-KVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLW 353 (986)
Q Consensus 275 a~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL-~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~ 353 (986)
-.++++.+..+ +..++...++.++.-.+..+...++.+| ..|...+.-.+.+- ..-+..++.
T Consensus 318 l~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~----------------~q~~a~~lN 380 (2710)
T PRK14707 318 LADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE----------------PQGVSSVLN 380 (2710)
T ss_pred HhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc----------------hhHHHHHHh
Confidence 23366555433 3334444555555433322333233332 22222222111111 111222333
Q ss_pred HHhcccccccccccccCCchHHHHHHHHHH-HHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH
Q psy15604 354 TLRNLSDAGTKVSLLFNEIENIQRVAAGLL-CELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424 (986)
Q Consensus 354 ~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L-~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~ 424 (986)
+|++. ++++ ....++..| ..+..|.+.++.|-..|+-..|=.+.+.++..+-..++..+
T Consensus 381 alsKW-----------p~~~-~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 381 ALSKW-----------PDTP-VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred hhhcC-----------CCch-HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 33333 2333 444555555 46778889999998888888888887777766544343333
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.63 E-value=7.1e-05 Score=52.66 Aligned_cols=40 Identities=43% Similarity=0.483 Sum_probs=37.8
Q ss_pred CccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHh
Q psy15604 194 HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 233 (986)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 233 (986)
+++++..+++.|++|.|+++|++++++++..|+.+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999997
No 99
>KOG0211|consensus
Probab=97.61 E-value=0.26 Score=58.37 Aligned_cols=458 Identities=16% Similarity=0.110 Sum_probs=238.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
+..+...++. +|..-+.....-+.+++.. .+.+. ..-.+|.+-..+ ....++...++.-++++.... ....+
T Consensus 84 ia~l~~e~~~-~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v--~~~~~ 156 (759)
T KOG0211|consen 84 IAVLIDELSN-TDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDV--GGPEY 156 (759)
T ss_pred HHHHhhccCc-hhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhc--cchhH
Confidence 3555554444 4666666676677777655 22222 234677777777 556677777777777777331 11111
Q ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCC
Q psy15604 244 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 323 (986)
Q Consensus 244 ~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~ 323 (986)
. .-..+++-.+.......++..+...+...+...+..... .-.-+++..+...+.-..+..+..+....+....
T Consensus 157 ~-~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~----~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~- 230 (759)
T KOG0211|consen 157 A-HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLR----EHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLP- 230 (759)
T ss_pred H-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHccchhhhhcchhhhhhhHHhccCCC-
Confidence 1 122333333333344455667777777666533322210 0112222222222221112222222222221111
Q ss_pred hHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcH
Q psy15604 324 KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATA 403 (986)
Q Consensus 324 ~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~ 403 (986)
...++.-..+..-++.. ...+.++..++.-+.+++.--. ......+.++
T Consensus 231 -~~~vk~elr~~~~~lc~----------------------------d~~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~ 279 (759)
T KOG0211|consen 231 -DDAVKRELRPIVQSLCQ----------------------------DDTPMVRRAVASNLGNIAKVLE--SEIVKSEVLP 279 (759)
T ss_pred -hHHHHHHHHHHHHhhcc----------------------------ccchhhHHHHHhhhHHHHHHHH--HHHHHhhccH
Confidence 11222222222222222 3455667777777777764322 2566778889
Q ss_pred HHHHHhccCchhHHHHHHHHH-HHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHh
Q psy15604 404 PLTDLLHSRNEGVEILIQGVH-KIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLI 482 (986)
Q Consensus 404 ~Lv~ll~~~~~~~~~~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~ 482 (986)
.+..+..+..+.++.++.-.. .+.
T Consensus 280 ~~~~L~~DdqdsVr~~a~~~~~~l~------------------------------------------------------- 304 (759)
T KOG0211|consen 280 TLIQLLRDDQDSVREAAVESLVSLL------------------------------------------------------- 304 (759)
T ss_pred HHhhhhhcchhhHHHHHHHHHHHHH-------------------------------------------------------
Confidence 999999888877776444322 111
Q ss_pred cCCchh-hhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy15604 483 NYQDDA-DLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 561 (986)
Q Consensus 483 ~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~ 561 (986)
.+-++. +......+.+++...+.+..++......+..+...-.. .... ...++.+...++.. ..+.+...+.-..
T Consensus 305 ~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~-~~e~r~a~a~~~~ 380 (759)
T KOG0211|consen 305 DLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDE-EWEVRYAIAKKVQ 380 (759)
T ss_pred HhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcch-hhhhhHHhhcchH
Confidence 010001 22233466777777788888887777777666544332 1111 24466666666543 4455555555555
Q ss_pred HhhC--CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHH
Q psy15604 562 NLSH--HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIV 639 (986)
Q Consensus 562 ~ls~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a 639 (986)
.++. +.+....+.....+|.+..+..++++.++...+....++.--.+ +... -.-..|.+...++...+.++...
T Consensus 381 ~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t-i~~llp~~~~~l~de~~~V~lnl 457 (759)
T KOG0211|consen 381 KLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT-ISELLPLLIGNLKDEDPIVRLNL 457 (759)
T ss_pred HHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC-ccccChhhhhhcchhhHHHHHhh
Confidence 5554 33445566667778999999999999999887777666653332 1111 12345666777888889999998
Q ss_pred HHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHH
Q psy15604 640 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 719 (986)
Q Consensus 640 ~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 719 (986)
.+.+..+-..++......+....++.+..+-.... ..++.+..+.+..++.... ..+.+...-+.+...+.+....+
T Consensus 458 i~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~-wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~I 534 (759)
T KOG0211|consen 458 IDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL-WRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSI 534 (759)
T ss_pred HHHHHHHHhccCcccchhhhhhhhhhhhhhccchh-HHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHH
Confidence 88887766554444444444455555555544332 3344444444444444322 22222222222222333333466
Q ss_pred HHHHHHHHHHhh
Q psy15604 720 VQNCLWTLRNLS 731 (986)
Q Consensus 720 ~~~al~~L~nLs 731 (986)
+..|+..+.-++
T Consensus 535 r~~aa~~l~~l~ 546 (759)
T KOG0211|consen 535 REAAARNLPALV 546 (759)
T ss_pred HHHHHHHhHHHH
Confidence 666666666555
No 100
>KOG1517|consensus
Probab=97.56 E-value=0.002 Score=74.77 Aligned_cols=180 Identities=15% Similarity=0.122 Sum_probs=148.1
Q ss_pred HHHhHHHHHHHhcCCCcchh-HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH-hcccCcchhHhhhCCchHHHHHHHHh
Q psy15604 96 LATRAIPELIKLLNDEDQDD-ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ-LSKKEASRHAIMNSPQMVAALVHAIS 173 (986)
Q Consensus 96 ~a~~aL~~l~~~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~-la~~~~~~~~i~~~~~~i~~Lv~lL~ 173 (986)
.-.+||.-|.+++.-..-.. ..+.-|..|..+++|.+...+.+---+-+-.+ |+-++..+-.+++.+|. ..++..|.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~-~YF~~vL~ 564 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGY-KYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCc-eeEEEEec
Confidence 34577777888776543332 33778999999999999988877655444433 77888888889988875 77888787
Q ss_pred cC--CCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCC-CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcH
Q psy15604 174 NS--NDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSP-VESVLFYAITTLHNLLLHQEGSKMAVRLAGGL 249 (986)
Q Consensus 174 ~~--~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i 249 (986)
++ -+++-|..|+-+|+.+..+ +-+++...+.+.+......|.++ .+-++..++-+|+.|..+.+..|-.=.+.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 63 2568999999999999998 88999999999999999999985 68899999999999998877777666778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 250 QKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 250 ~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
..|..+|.++-++++.++..||..+-.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999965
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.24 Score=54.56 Aligned_cols=492 Identities=15% Similarity=0.145 Sum_probs=227.0
Q ss_pred HHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC
Q psy15604 96 LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS 175 (986)
Q Consensus 96 ~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~ 175 (986)
.+...|.+|..++...+....-......=.+.++..+.|+..|...-.++..|+...+- .++ | ...+.+=++.+
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted--vlm---~-tssiMkD~~~g 113 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED--VLM---G-TSSIMKDLNGG 113 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh--hhH---H-HHHHHHhhccC
Confidence 45566667776666655554444444455678888999988888777777777754311 111 1 24444445555
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhC----CCCHhHHHHHHHHHHHHhcCCCCchHHHHH--cCcH
Q psy15604 176 NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS----SPVESVLFYAITTLHNLLLHQEGSKMAVRL--AGGL 249 (986)
Q Consensus 176 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i 249 (986)
.+..++-.|.+.|...... .-++..=++|. ++.+.++..|+..-++|.-.+.+....... +.++
T Consensus 114 ~~~~~kp~AiRsL~~Vid~----------~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav 183 (898)
T COG5240 114 VPDDVKPMAIRSLFSVIDG----------ETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAV 183 (898)
T ss_pred CccccccHHHHHHHHhcCc----------chhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHH
Confidence 5567888888888876433 23333333332 334555666665555555222211111110 1122
Q ss_pred HHHHHHhc---------cCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHH-----HHHHH
Q psy15604 250 QKMVLLLG---------RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCT-----SRVLK 315 (986)
Q Consensus 250 ~~L~~ll~---------~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a-----~~aL~ 315 (986)
-.+-+.-. ..++-.+-.+...|..+-..+. + +.-.+++.++.+.. ++.+- .++..
T Consensus 184 ~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk-----m----a~lklv~hf~~n~s--mknq~a~V~lvr~~~ 252 (898)
T COG5240 184 LDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK-----M----AQLKLVEHFRGNAS--MKNQLAGVLLVRATV 252 (898)
T ss_pred hhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH-----H----HHHHHHHHhhcccc--cccchhheehHHHHH
Confidence 22222110 1223344455555544433222 1 12334444443321 11100 01111
Q ss_pred HhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHH
Q psy15604 316 VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAET 395 (986)
Q Consensus 316 ~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 395 (986)
.+- ..|. .....+..+|.+ ++.+.-+.++..++++++.++..- ....
T Consensus 253 ~ll--~~n~------q~~~q~rpfL~~------------------------wls~k~emV~lE~Ar~v~~~~~~n-v~~~ 299 (898)
T COG5240 253 ELL--KENS------QALLQLRPFLNS------------------------WLSDKFEMVFLEAARAVCALSEEN-VGSQ 299 (898)
T ss_pred HHH--HhCh------HHHHHHHHHHHH------------------------HhcCcchhhhHHHHHHHHHHHHhc-cCHH
Confidence 110 0111 112222223321 223455678889999999887321 1222
Q ss_pred HHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHH
Q psy15604 396 IEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLK 475 (986)
Q Consensus 396 l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 475 (986)
+.+. .+..|-.+|.+.....+..+...+ -.++...++. ...|
T Consensus 300 ~~~~-~vs~L~~fL~s~rv~~rFsA~Ril--n~lam~~P~k-v~vc---------------------------------- 341 (898)
T COG5240 300 FVDQ-TVSSLRTFLKSTRVVLRFSAMRIL--NQLAMKYPQK-VSVC---------------------------------- 341 (898)
T ss_pred HHHH-HHHHHHHHHhcchHHHHHHHHHHH--HHHHhhCCce-eeec----------------------------------
Confidence 2222 567778888888777776665544 1122222211 0000
Q ss_pred HHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHH
Q psy15604 476 HAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKG 555 (986)
Q Consensus 476 ~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~ 555 (986)
=+.+-.++.+.+..+-..|...|.+-...+ ....++. .|+.+++=+++ ..+.-
T Consensus 342 -------------------N~evEsLIsd~Nr~IstyAITtLLKTGt~e-~idrLv~---~I~sfvhD~SD----~FKiI 394 (898)
T COG5240 342 -------------------NKEVESLISDENRTISTYAITTLLKTGTEE-TIDRLVN---LIPSFVHDMSD----GFKII 394 (898)
T ss_pred -------------------ChhHHHHhhcccccchHHHHHHHHHcCchh-hHHHHHH---HHHHHHHhhcc----CceEE
Confidence 011122233333333333333333222111 1111211 12223222211 12222
Q ss_pred HHHHHHHhhC-CccchhhhhccCChHHHHHh-cCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCH
Q psy15604 556 AVGTLHNLSH-HRQGLLAIFKSGGIPALVKL-LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV 633 (986)
Q Consensus 556 a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~ 633 (986)
+..++..|+. .+.-+.. .+..|... ++.+.-+.+.+++-++..+....|+.++.. +..|+..+.+.
T Consensus 395 ~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc-- 462 (898)
T COG5240 395 AIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC-- 462 (898)
T ss_pred eHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--
Confidence 3333344433 2222211 22333332 234445667777777777766665555433 34455555432
Q ss_pred hHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHH-HHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhh
Q psy15604 634 KFLAIVTDCLQILAYGNQESKLIILASQGPVELVR-IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL 712 (986)
Q Consensus 634 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll 712 (986)
+.-..+.+.|..|.+..|..+.. ...+..+.. ++- .+..++.++..+|.-.+-..+ ..+....+...|.+.+
T Consensus 463 ey~~I~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iL--EN~ivRsaAv~aLskf~ln~~--d~~~~~sv~~~lkRcl 535 (898)
T COG5240 463 EYHQITVRILGILGREGPRAKTP---GKYVRHIYNRLIL--ENNIVRSAAVQALSKFALNIS--DVVSPQSVENALKRCL 535 (898)
T ss_pred chhHHHHHHHHHhcccCCCCCCc---chHHHHHHHHHHH--hhhHHHHHHHHHHHHhccCcc--ccccHHHHHHHHHHHh
Confidence 22334555666666643322100 001222222 221 124567777777776655433 2222333456777888
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy15604 713 GHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 713 ~~~~~~v~~~al~~L~nLs 731 (986)
.+.+..++..|...|+||-
T Consensus 536 nD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 536 NDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hcccHHHHHHHHHHHHhhh
Confidence 9999999999999999997
No 102
>KOG2734|consensus
Probab=97.51 E-value=0.017 Score=61.18 Aligned_cols=237 Identities=18% Similarity=0.216 Sum_probs=172.2
Q ss_pred HHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCc----------chhHhhhCCchHHHHH
Q psy15604 100 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA----------SRHAIMNSPQMVAALV 169 (986)
Q Consensus 100 aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~----------~~~~i~~~~~~i~~Lv 169 (986)
.+..+.-++.-++--..+++..+++.|+.+|.+++.++....+..|..|...+. .-+.+++ |++++.|+
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLV 182 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHH
Confidence 334444455666666778999999999999999999999999999999985431 1224444 34677777
Q ss_pred HHHhcC-----CCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCC--CCHhHHHHHHHHHHHHhcCCCCchH
Q psy15604 170 HAISNS-----NDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSS--PVESVLFYAITTLHNLLLHQEGSKM 241 (986)
Q Consensus 170 ~lL~~~-----~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~ 241 (986)
+-+..- ++..-...+...+-|+..- ++....+++.|.+..|+..+.. +-..-+.+|...|.-+...+..++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 766431 1234556667777788766 7888889999888888775543 3345688999999999877777888
Q ss_pred HHHHcCcHHHHHHHhcc---------CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHH
Q psy15604 242 AVRLAGGLQKMVLLLGR---------NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSR 312 (986)
Q Consensus 242 ~i~~~g~i~~L~~ll~~---------~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~ 312 (986)
....-.|+..+++-+.- +..........+||++-. .++++..+....|++...-+++... ..+..+++
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~Kk--~sr~Salk 339 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLREKK--VSRGSALK 339 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHHHH--HhhhhHHH
Confidence 88888899988887731 123455566777777766 6779999999999988887777632 35667788
Q ss_pred HHHHhhhCCC---ChHHHHHhccHHHHHHHh
Q psy15604 313 VLKVLSVCSS---NKPAIVEAGGMQALAMHL 340 (986)
Q Consensus 313 aL~~Ls~~~~---~~~~i~~~g~l~~L~~ll 340 (986)
+|-.....+. +...+++.+|+..+..+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 8887765554 345678888888887654
No 103
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.46 E-value=0.021 Score=62.73 Aligned_cols=213 Identities=25% Similarity=0.224 Sum_probs=149.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
.+..+...+.+.+...+..+...+..+- ..-+++.+..++.+.++.++..++.+|+.+-...
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-------------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~----- 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-------------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPE----- 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-----
Confidence 6888899998888888777766543332 2347899999999999999999999887765432
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCH------------hHHHHH
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVE------------SVLFYA 225 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~~~~~a 225 (986)
.++.|+.+|....+..+|..|..+|..+- +..++.+++..+..... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 46999999986578999999999999983 23357788888877552 355566
Q ss_pred HHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHH
Q psy15604 226 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 305 (986)
Q Consensus 226 ~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~ 305 (986)
+..|..+. +...++.+...+.+....++..+..+|..+...+ ....+.+...+...+..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~- 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE- 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH-
Confidence 66666555 1345788889998888899999999998886643 23446677777776665
Q ss_pred HHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHH
Q psy15604 306 LLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTL 355 (986)
Q Consensus 306 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L 355 (986)
++..+..+|..+.. ......+...+..............+
T Consensus 229 vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 229 VRKAALLALGEIGD----------EEAVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred HHHHHHHHhcccCc----------chhHHHHHHHHhccchHHHHHHHHHh
Confidence 67666666543322 12235566666665555554443333
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.46 E-value=0.012 Score=64.62 Aligned_cols=214 Identities=24% Similarity=0.277 Sum_probs=154.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhh
Q psy15604 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA 572 (986)
Q Consensus 493 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 572 (986)
..++.+.+.+.+++..++..++..+..+.. ...++.+..++.+. ++.++..++.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDE-DPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC-------
Confidence 357888899999999999999988665533 25688888888665 77899999987777633
Q ss_pred hhccCChHHHHHhcC-CCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCH------------hHHHHH
Q psy15604 573 IFKSGGIPALVKLLS-SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV------------KFLAIV 639 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~------------~v~~~a 639 (986)
...++.++.++. +++..++..+.++|+.+- ....+..++..+.++.. .++..+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~-----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLG-----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 347889999998 588999999999999887 33447778888877552 234444
Q ss_pred HHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHH
Q psy15604 640 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 719 (986)
Q Consensus 640 ~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 719 (986)
..++..+-. ...++.+...+...+ ..++..+..+|..+.... ....+.+...+.+++..+
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDED-ADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHH
Confidence 444444332 245677777787776 467777777777766543 245577888888899999
Q ss_pred HHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 720 VQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 720 ~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
+..++..|+.+-. ....+.+...+.+.+..++..+...+.
T Consensus 230 r~~~~~~l~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 230 RKAALLALGEIGD--------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHhcccCc--------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 9999988887642 345677777787777777766665554
No 105
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.45 E-value=0.00035 Score=59.42 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=70.5
Q ss_pred hHHHHHhc-CCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHH
Q psy15604 579 IPALVKLL-SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLII 657 (986)
Q Consensus 579 i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 657 (986)
||.|++.| +++++.++..++++|+++. ...+++.|+++++++++.++..++++|..+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 57899988 8999999999999999543 23568999999999999999999999997732
Q ss_pred HhCCChHHHHHHHhcCChhHHHHHHHHHHH
Q psy15604 658 LASQGPVELVRIMRSYDYEKLLWCTSRVLK 687 (986)
Q Consensus 658 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~ 687 (986)
...++.|.+++.+++...++..+.++|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2578899999988776667777776663
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.43 E-value=0.073 Score=58.82 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=98.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc---cchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCC--C
Q psy15604 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHHR---QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQE--G 238 (986)
Q Consensus 164 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~ 238 (986)
++..++.+|++ ..+.+|+.|+...+.|+.-- ..-+.+...|. .|.+-|....+++.-..+.+++.+..... .
T Consensus 605 ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 35566677777 68899999998887776542 22233444444 36777888889988777777666653221 1
Q ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhh---HHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHH
Q psy15604 239 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQES---KLIILASQGPVELVRIMRSYDYEKLLWCTSRVLK 315 (986)
Q Consensus 239 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~---~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~ 315 (986)
.+.-+ .|.+|.|..+|++.+.+++......+..++...++. |+.+ ..--.|+..|++.+.+ ++.+|...+.
T Consensus 682 mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKe-iRR~A~~tfG 755 (975)
T COG5181 682 MQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKE-IRRNATETFG 755 (975)
T ss_pred cCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHH-HHHhhhhhhh
Confidence 22223 588999999999999999999999999998866642 2222 1123477778877765 7777777776
Q ss_pred Hhh
Q psy15604 316 VLS 318 (986)
Q Consensus 316 ~Ls 318 (986)
.+|
T Consensus 756 ~Is 758 (975)
T COG5181 756 CIS 758 (975)
T ss_pred hHH
Confidence 555
No 107
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.39 E-value=0.017 Score=63.17 Aligned_cols=223 Identities=14% Similarity=0.180 Sum_probs=145.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 496 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 496 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
+.+..++-+++.+++..+.++++.+..+....+.+... ++--.++..|..+ .+..-+++|...+..+...+.+... .
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 34444455555999999999999999998877777764 5444555556443 3455677888888777664333322 2
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
..+.+..++.+..++++..+..|+.+|..++..+| +.+..+||+..|++.+.++..++...++.++-.+... |..+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRTR 181 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cchh
Confidence 45678899999999999999999999999998766 5667899999999988776656777777777777754 6666
Q ss_pred HHHHhCCChHHHHHHHhcC------Chh--HHHHHHHHHHHHh-hcCCCCch-hHHhcCcHHHHHHhhCCCCHHHHHHHH
Q psy15604 655 LIILASQGPVELVRIMRSY------DYE--KLLWCTSRVLKVL-SVCSSNKP-AIVEAGGMQALAMHLGHPSQRLVQNCL 724 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~------~~~--~~~~~~~~~L~~L-s~~~~~~~-~l~~~g~~~~L~~ll~~~~~~v~~~al 724 (986)
..+...--++.+..-+.+. +.. +....+..++..+ -+.+..-. ..-+..++..|+..|..+++.++...+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 6665433455555544433 111 2333444444433 22211110 011113566777777777777664444
No 108
>KOG2734|consensus
Probab=97.32 E-value=0.023 Score=60.30 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=174.5
Q ss_pred HHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc------cch----HHHHhcCChHHHH
Q psy15604 142 AMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR------QGL----LAIFKSGGIPALV 211 (986)
Q Consensus 142 ~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~------~~~----~~i~~~g~i~~Lv 211 (986)
.+-+.-+|.-|+.-..+++..+ ++.|+.+|.. ++.++....+..|..|+..+ ++. +.+++.++++.|+
T Consensus 105 IQ~mhvlAt~PdLYp~lveln~-V~slL~LLgH-eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 105 IQEMHVLATMPDLYPILVELNA-VQSLLELLGH-ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHhhhcChHHHHHHHHhcc-HHHHHHHhcC-CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 4446667788888778888876 6999999987 67788888888888887642 223 3566778999998
Q ss_pred HhhCCCCHh------HHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhccChhhHH
Q psy15604 212 KLLSSPVES------VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAYGNQESKL 283 (986)
Q Consensus 212 ~lL~~~~~~------~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~aL~~La~~~~~~~~ 283 (986)
+-+..-++. -...++..+-|+..-.+.....+.+.|.+.+|+.-+.. .-+.....+.+.|..+-.++.+++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 877543333 45677888899998888888888989999999885544 3355666778888888877777888
Q ss_pred HHHhCCCHHHHHHHHhc---CC-----hHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHH
Q psy15604 284 IILASQGPVELVRIMRS---YD-----YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTL 355 (986)
Q Consensus 284 ~~~~~g~v~~L~~ll~~---~~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L 355 (986)
....-+|+..+++-+.- ++ .+...++....|+.+-..+.|+..+....+++...-++...
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K------------ 330 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK------------ 330 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH------------
Confidence 89999999999887642 22 23455666667777777888989998888888776555431
Q ss_pred hcccccccccccccCCchHHHHHHHHHHHHHhhCh---hhHHHHHhcCCcHHHHHHhc
Q psy15604 356 RNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDK---EGAETIEAEGATAPLTDLLH 410 (986)
Q Consensus 356 ~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~l~~~g~l~~Lv~ll~ 410 (986)
...+..+.++|-+...++ +++..+++.+|+..+..+.-
T Consensus 331 -----------------k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 331 -----------------KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred -----------------HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 123556777787766554 67888888888888776653
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.29 E-value=0.00088 Score=56.91 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHH
Q psy15604 537 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 616 (986)
Q Consensus 537 i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~ 616 (986)
|+.|++.|..++++.++..++++|+.+. ....++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 5788898966779999999999998542 1245899999999999999999999999884
Q ss_pred HhCcHHHHHHhhcCC-CHhHHHHHHHHHH
Q psy15604 617 LAGGLQKMVLLLGRN-NVKFLAIVTDCLQ 644 (986)
Q Consensus 617 ~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~ 644 (986)
...+++.|.+++.++ +..++..+.++|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 355789999998876 5556788887764
No 110
>KOG1517|consensus
Probab=97.26 E-value=0.008 Score=70.12 Aligned_cols=210 Identities=14% Similarity=0.098 Sum_probs=160.1
Q ss_pred hhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-C--CHhHHHHHHHHHHHHhcC
Q psy15604 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-N--NVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~--~~~v~~~a~~aL~~L~~~ 649 (986)
-..-|..|.+++||+++..+++.--+..=..+..-++.++..+.+.++-...++.+.. . +++-+..++..|+.++.+
T Consensus 508 aLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 508 ALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 3457999999999999999988776666666665667788877777777777777765 2 468888999999999998
Q ss_pred CcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHh-hcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q psy15604 650 NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL-SVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728 (986)
Q Consensus 650 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~L-s~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~ 728 (986)
.+-++...++.+.+..-+..|.++...-++.-++-+|+.| .+.+..+-.-.+.++.+.|..++..+.++|+.+|..+|+
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 8888889998888877777777653345555556677777 455666666667789999999999999999999999999
Q ss_pred Hhhccc-----c--ccc-----------chhchH----HHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHh
Q psy15604 729 NLSDAG-----T--KVD-----------GLESLL----QSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVN 782 (986)
Q Consensus 729 nLs~~~-----~--~~~-----------~~~~~l----~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~ 782 (986)
.+.+.. + ... ..+..+ ..++..+++..+-++++.+-+|+.+.-|..++.+.+.-
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 887432 1 111 112222 36777888889999999999999988888888877654
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.23 E-value=0.0084 Score=60.62 Aligned_cols=234 Identities=11% Similarity=0.087 Sum_probs=152.9
Q ss_pred HHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHH-HhCCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcccCcchh
Q psy15604 80 PELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDAD-LATRAIPELIKLLND--EDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 80 ~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i-~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
+.|-+++++-++-.+..|+.+|.++.- ..+.|+.+ .+..+--.++.+++. ++..++.+.+-+++.++.++...+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aq 228 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQ 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHH
Confidence 334445555566677778777766654 55566655 344455667777775 467899999999999999988876
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-c-cchHHHHhcCChHHHHHhhC---CCCHhHHHHHHHHHH-
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-R-QGLLAIFKSGGIPALVKLLS---SPVESVLFYAITTLH- 230 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~-~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~- 230 (986)
.+-+.-..+..|+.+.+....+.+.+.++.++.|++.. | ..-..+.-.|-+.+-++.|. .+|++++...-..=.
T Consensus 229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 66555445788888888756778899999999999873 2 22223333454555566663 235554432211111
Q ss_pred ------HHhc--------------CCCCc---------hHHHHH--cCcHHHHHHHhccCCHH-HHHHHHHHHHHHhccC
Q psy15604 231 ------NLLL--------------HQEGS---------KMAVRL--AGGLQKMVLLLGRNNVK-FLAIVTDCLQILAYGN 278 (986)
Q Consensus 231 ------~L~~--------------~~~~~---------~~~i~~--~g~i~~L~~ll~~~~~~-~~~~a~~aL~~La~~~ 278 (986)
.++. .+|.. ...+.+ ...+..|.++++.+++. ....|+.-+..+....
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 1110 11111 111111 23466788888876665 4445667777777788
Q ss_pred hhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHh
Q psy15604 279 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317 (986)
Q Consensus 279 ~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~L 317 (986)
|+.+..+...|+-+.++.++.+++++ ++..|+.++..+
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~d~~-VkfeAl~a~q~~ 426 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHDDDD-VKFEALQALQTC 426 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCCCch-hhHHHHHHHHHH
Confidence 99999999999999999999998876 888888887554
No 112
>KOG0915|consensus
Probab=97.20 E-value=0.75 Score=56.96 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHh
Q psy15604 548 NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL 627 (986)
Q Consensus 548 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l 627 (986)
.-+++++.+..++..|+.+....-.-.-...+|.|+.....-.+.+.-+...=+.|.- ..++..+-.-
T Consensus 1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e------------~ealDt~R~s 1210 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIE------------TEALDTLRAS 1210 (1702)
T ss_pred chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhH------------HHHHHHHHHh
Confidence 3589999999999999874332111112344566666655544544433222222211 1222222111
Q ss_pred hcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCCchhHHhcCcH
Q psy15604 628 LGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC--SSNKPAIVEAGGM 705 (986)
Q Consensus 628 l~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~--~~~~~~l~~~g~~ 705 (986)
...++|. ....-.|+.++ ...+++ ..++.+.++++..-.-..+..+...+..|+.. .+.++..- ..+
T Consensus 1211 ~aksspm-meTi~~ci~~i-------D~~vLe-elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg--Kll 1279 (1702)
T KOG0915|consen 1211 AAKSSPM-METINKCINYI-------DISVLE-ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG--KLL 1279 (1702)
T ss_pred hhcCCcH-HHHHHHHHHhh-------hHHHHH-HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh--HHH
Confidence 1112221 11111222211 112222 35666777776552222223333344433221 12222221 245
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhcc
Q psy15604 706 QALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVG 771 (986)
Q Consensus 706 ~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~ 771 (986)
.++...+++.++.+++....+.+.|...... -.+..++..+...+-.+++..++-+|.+++||+.
T Consensus 1280 ~al~~g~~dRNesv~kafAsAmG~L~k~Ss~-dq~qKLie~~l~~~l~k~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1280 RALFPGAKDRNESVRKAFASAMGYLAKFSSP-DQMQKLIETLLADLLGKDESLKSISCATISNIAN 1344 (1702)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHhccCCCccchhHHHHHHHHH
Confidence 6677777888899999988888888732210 0123566666666655666666888999987543
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.19 E-value=0.033 Score=62.93 Aligned_cols=256 Identities=16% Similarity=0.111 Sum_probs=164.9
Q ss_pred HHHHHHhhhccccchhhhcccCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHH
Q psy15604 514 AMMVHQLSKKEASRHAIMNSPQMVAALVHAI---------SNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALV 583 (986)
Q Consensus 514 ~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL---------~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv 583 (986)
+.+|+-++++......+... ..+..|..+- ....++++..+|..+|+|+-. ++..+...++.|+.+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTE-EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhccH-HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 45677777877777777765 5666666655 344578999999999999998 777888888999999999
Q ss_pred HhcCCC-----CHhHHHHHHHHHHHhhcCCCCChHHHH-HhCcHHHHHHhhcC-----------------CCHhHHHHHH
Q psy15604 584 KLLSSP-----VESVLFYAITTLHNLLLHQEGSKMAVR-LAGGLQKMVLLLGR-----------------NNVKFLAIVT 640 (986)
Q Consensus 584 ~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~v~-~~g~v~~Lv~ll~~-----------------~~~~v~~~a~ 640 (986)
..|+.. +.++.....+.|.-++......+..+. +.+++..++..+.. ........+.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 788999999999988887777665544 55777777665521 0234456677
Q ss_pred HHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC--------ChhHHHHHHHHHHHHhhcC--------CCCc----hhHH
Q psy15604 641 DCLQILAYGNQESKLIILASQGPVELVRIMRSY--------DYEKLLWCTSRVLKVLSVC--------SSNK----PAIV 700 (986)
Q Consensus 641 ~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--------~~~~~~~~~~~~L~~Ls~~--------~~~~----~~l~ 700 (986)
..+.|+....+...... ....++.++.++..- ........+..+|.++-.. +... ....
T Consensus 161 KllFNit~~~~~~~~~~-~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEE-FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHhhhccCcccchh-hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 77888877543332211 112344555544321 1234445566666666211 0001 1111
Q ss_pred hcCcHHHHHHhhCC----C----CHHHHHHHHHHHHHhhccccc-------------------ccchhchHHHHHHHhcc
Q psy15604 701 EAGGMQALAMHLGH----P----SQRLVQNCLWTLRNLSDAGTK-------------------VDGLESLLQSLVQLLAS 753 (986)
Q Consensus 701 ~~g~~~~L~~ll~~----~----~~~v~~~al~~L~nLs~~~~~-------------------~~~~~~~l~~L~~ll~~ 753 (986)
....+..|+.+|.. . -.....+.+..|++++..... ......+-..|++++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 22355666666531 1 135677888888888843210 11234788899999999
Q ss_pred CChhhHHHHHHHHhhhcc
Q psy15604 754 QDINVITCAAGVTVCQVG 771 (986)
Q Consensus 754 ~~~~i~~~a~~~L~ni~~ 771 (986)
..++++..++..|..++.
T Consensus 320 ~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCK 337 (446)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 989999888877765543
No 114
>KOG2259|consensus
Probab=97.15 E-value=0.0078 Score=66.81 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=74.5
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
|..+|++ .++++-|.+ +--++|++|...++.|+.+ |..... .+..|+.++++...+++..|+.+|..++.+
T Consensus 369 iI~sGAC-GA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~- 440 (823)
T KOG2259|consen 369 IIPSGAC-GALVHGLED-EFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH- 440 (823)
T ss_pred ccccccc-ceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence 4444443 566665655 4568999999999999887 665553 466899999999999999999999998833
Q ss_pred CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQIL 274 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~L 274 (986)
- ..+..-++.++..|.+.+++++......|++.
T Consensus 441 l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 441 L-----AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred h-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 1 12244567778888888787777666555544
No 115
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.12 E-value=0.0014 Score=55.68 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhc--CCCHhHHHHHHHHHHHHhcCCcccHHHHHh
Q psy15604 593 VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG--RNNVKFLAIVTDCLQILAYGNQESKLIILA 659 (986)
Q Consensus 593 v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~--~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 659 (986)
++...+..|+|+++.++..++.+++.|+++.++.... ..+|-++..+.+|++||+.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567788999999999999999999999999998754 458999999999999999999888876654
No 116
>KOG4535|consensus
Probab=97.10 E-value=0.15 Score=54.86 Aligned_cols=259 Identities=16% Similarity=0.088 Sum_probs=144.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhhccc------c-chhhhcccCcHHHH------HHhhcCCCCHHHHHHHHHHHHHhhCC
Q psy15604 500 KLLNDEDQVVVSQAAMMVHQLSKKEA------S-RHAIMNSPQMVAAL------VHAISNSNDLETTKGAVGTLHNLSHH 566 (986)
Q Consensus 500 ~ll~~~~~~~~~~a~~~L~~l~~~~~------~-~~~l~~~~~~i~~L------~~lL~~~~~~~~~~~a~~~L~~ls~~ 566 (986)
..+.+.++.++..++..+..+...-. . ...+.. +..... -...-++..+..+...+-++.+++..
T Consensus 302 ~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~--~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~ 379 (728)
T KOG4535|consen 302 KCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQR--APFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPE 379 (728)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhh--ccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCch
Confidence 34556788889888888877643211 1 111111 101000 01111112344566667777777541
Q ss_pred -----ccch---hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHH
Q psy15604 567 -----RQGL---LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAI 638 (986)
Q Consensus 567 -----~~~~---~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~ 638 (986)
++.+ ..++..|+- .+.+.-++..|.+++.-...|.....+...-..+...+...+.+..-..+..
T Consensus 380 ~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~K 452 (728)
T KOG4535|consen 380 AFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAK 452 (728)
T ss_pred hhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHH
Confidence 1111 111222211 2222335666777776666666655555555566666777777777788999
Q ss_pred HHHHHHHHhc----CCccc--HHHHHhCCChHHHHHHH--hcCChhHHHHHHHHHHHHhhcCCC----CchhHHhcCcHH
Q psy15604 639 VTDCLQILAY----GNQES--KLIILASQGPVELVRIM--RSYDYEKLLWCTSRVLKVLSVCSS----NKPAIVEAGGMQ 706 (986)
Q Consensus 639 a~~aL~~L~~----~~~~~--~~~~~~~~~~~~L~~ll--~~~~~~~~~~~~~~~L~~Ls~~~~----~~~~l~~~g~~~ 706 (986)
+.|+++|++. +-|.. ...-.....+..+++.- ...+...+...+.++|.|+...-. .....+..|.+.
T Consensus 453 aawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~ 532 (728)
T KOG4535|consen 453 AAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQ 532 (728)
T ss_pred HHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHH
Confidence 9999999976 22322 22222212233343332 223456677888899998864311 111222234444
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhhccccc----ccchhchHHHHHHHhcc-CChhhHHHHHHHHh
Q psy15604 707 ALAMHLG-HPSQRLVQNCLWTLRNLSDAGTK----VDGLESLLQSLVQLLAS-QDINVITCAAGVTV 767 (986)
Q Consensus 707 ~L~~ll~-~~~~~v~~~al~~L~nLs~~~~~----~~~~~~~l~~L~~ll~~-~~~~i~~~a~~~L~ 767 (986)
.+..... ...-.|+=+++.+++||...+.- ++--..+.+.|..++.+ .|-.+|..|+.+|+
T Consensus 533 ~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 533 ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 4443322 23468999999999999976652 33334677888888765 48899999999997
No 117
>KOG1078|consensus
Probab=97.06 E-value=0.95 Score=52.20 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=80.5
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhh
Q psy15604 495 IPELIKLLNDE-DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAI 573 (986)
Q Consensus 495 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 573 (986)
++.|.++|+++ .-+.......++..+........ ..++..|+.++.+. +...-+..+|.-+.. ++....
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDc---e~~~i~~rILhlLG~--EgP~a~ 462 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDC---EFTQIAVRILHLLGK--EGPKAP 462 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhc---cchHHHHHHHHHHhc--cCCCCC
Confidence 44455555543 33444444555555444222110 12344555555443 233345556665543 233333
Q ss_pred hccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 574 FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 574 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
.....+..+.+...-.+..++..|..+|.++....+..+..+ ...|..++.+.+.+++..|...|.++-.
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI-----~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSI-----LVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccH-----HHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 334455555555555567889999999999996665544433 3567778888899999999999988873
No 118
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.97 E-value=0.028 Score=63.46 Aligned_cols=175 Identities=16% Similarity=0.104 Sum_probs=118.8
Q ss_pred HHHHHHHhcccCcchhHhhhCCchHHHHHHHH---------hcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHH
Q psy15604 141 AAMMVHQLSKKEASRHAIMNSPQMVAALVHAI---------SNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPAL 210 (986)
Q Consensus 141 a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL---------~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L 210 (986)
|+.+|.-+++++...+.+....+ +..|.+.- ....+..+...|+.+|+|+-.. +..+..+++.|..+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~-l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEG-LSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhccHHH-HHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35667778888888888877665 47777765 3346789999999999999888 7899999999999999
Q ss_pred HHhhCCC-----CHhHHHHHHHHHHHHhcCCCCchHHH-HHcCcHHHHHHHhcc--------C---------CHHHHHHH
Q psy15604 211 VKLLSSP-----VESVLFYAITTLHNLLLHQEGSKMAV-RLAGGLQKMVLLLGR--------N---------NVKFLAIV 267 (986)
Q Consensus 211 v~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~i-~~~g~i~~L~~ll~~--------~---------~~~~~~~a 267 (986)
+..|+.. +.++.....+.|.-++......+..+ .+.+++..+...+.. . +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 78899999999988887776666554 445788877777632 1 12223344
Q ss_pred HHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcC--------ChHHHHHHHHHHHHHh
Q psy15604 268 TDCLQILAYGNQESKLIILASQGPVELVRIMRSY--------DYEKLLWCTSRVLKVL 317 (986)
Q Consensus 268 ~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~--------~~~~~~~~a~~aL~~L 317 (986)
...+.|+....+.... -.....++.++.++... ........+..+|.++
T Consensus 160 LKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 5556666543322211 12234455565554422 1133556666676665
No 119
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.97 E-value=0.0012 Score=46.34 Aligned_cols=38 Identities=42% Similarity=0.500 Sum_probs=35.2
Q ss_pred cchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhh
Q psy15604 568 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 605 (986)
Q Consensus 568 ~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 605 (986)
+++..+.+.|+++.|++++++++++++..++|+|+|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46777889999999999999999999999999999997
No 120
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.85 E-value=0.0022 Score=45.04 Aligned_cols=38 Identities=32% Similarity=0.292 Sum_probs=34.8
Q ss_pred ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 611 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 611 ~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
.+..+.+.|+++.|++++.+++++++..++|+|+||++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 56778889999999999999999999999999999974
No 121
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.71 E-value=0.0016 Score=49.31 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHh
Q psy15604 550 LETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604 (986)
Q Consensus 550 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl 604 (986)
+.++..|+++|++++........-.....++.|+.+|++++++|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887444444445677899999999999999999999999875
No 122
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.70 E-value=0.021 Score=58.73 Aligned_cols=189 Identities=16% Similarity=0.075 Sum_probs=113.1
Q ss_pred CCCCHhHHHHHHHHHHHhhcCC--CCChHHHH-H-hCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCC
Q psy15604 587 SSPVESVLFYAITTLHNLLLHQ--EGSKMAVR-L-AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQG 662 (986)
Q Consensus 587 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~v~-~-~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 662 (986)
.+.+-+.+..++..|..++... ......+. . ...+..+...+.+....+...+|.++..++..-...-....+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4556678889999999998776 22222221 1 144456777777777889999999999998743222222332 45
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc---cccc
Q psy15604 663 PVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT---KVDG 739 (986)
Q Consensus 663 ~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~---~~~~ 739 (986)
++.|++.+.++. ..+...+..+|..+.........+ ....+...+.+.++.++..++.++..+..... ....
T Consensus 96 l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 777877777765 667788888888886643311111 14566777889999999999999998873332 2111
Q ss_pred ----hhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHH
Q psy15604 740 ----LESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIV 781 (986)
Q Consensus 740 ----~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~ 781 (986)
...+++.+...+.++++++|..|-.++..+....++....+.
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 246889999999999999999999999866555555444443
No 123
>KOG1058|consensus
Probab=96.60 E-value=0.47 Score=54.23 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC------CCHHHHHHHHHHHHHhhC-Cc
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS------NDLETTKGAVGTLHNLSH-HR 567 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~------~~~~~~~~a~~~L~~ls~-~~ 567 (986)
+-.+++.|.++|-+++..+......++..... .+++..|..-+.++ ++..-+..-..++...+. .+
T Consensus 319 ~mDvLrvLss~dldvr~Ktldi~ldLvssrNv-------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 319 IMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV-------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHHHHcCcccccHHHHHHHHHHhhhhhccH-------HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 44567788889999999998888887554421 12333333222221 122345556667777665 33
Q ss_pred cchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHH
Q psy15604 568 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQIL 646 (986)
Q Consensus 568 ~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L 646 (986)
+. .+..++.|+..+.+.++..-...+..+.......+..|..+. ..|++-+.. .+.++.+.+.|.+..-
T Consensus 392 ~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 392 EV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEY 461 (948)
T ss_pred HH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHH
Confidence 33 245679999999999998888888888888877776665553 445444433 3556677788888877
Q ss_pred hcCC
Q psy15604 647 AYGN 650 (986)
Q Consensus 647 ~~~~ 650 (986)
|.+.
T Consensus 462 ce~~ 465 (948)
T KOG1058|consen 462 CEGL 465 (948)
T ss_pred Hhhh
Confidence 7653
No 124
>KOG4203|consensus
Probab=96.59 E-value=2.2e-05 Score=87.48 Aligned_cols=284 Identities=18% Similarity=0.120 Sum_probs=164.9
Q ss_pred hhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHH-HHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQ-KMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~-~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
+.+.| ++..+.++.. ...++..+..++...... +..+...++++ .++.....+..+.+..-.-+..-++..+.
T Consensus 71 ~~~~~-~~~~v~~ls~----~~fY~~lt~~~~~~a~~~-~~~f~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~ 144 (473)
T KOG4203|consen 71 IERDG-RQPQVVLLSQ----DSFYKVLTSEELAKAQEG-KYNFDHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRD 144 (473)
T ss_pred hhhcc-CCCeEEEeec----HHHHHhhchHHHHHhhhc-cccccCCCCcchhhHHHHHhcccccceeeceeeeeecccCC
Confidence 34455 5655555554 446666666666655544 44444556665 55555444555555554555555666666
Q ss_pred ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15604 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs 731 (986)
+.+..++.++++..+..+|..++.+...+....++ +..+++++.+..-.|.+..+-.-+.+-.+.... ++..
T Consensus 145 ~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~f--vd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~------f~kp 216 (473)
T KOG4203|consen 145 EEKTIVVYPADVIILEGILAFYDERVRDLFTMKLF--VDTDADVRLARRILRDIVERGRDLESILTQYST------FVKP 216 (473)
T ss_pred CCceEEecCCCceeehhHHHHhHHHHHHHhcceEE--EecCcchhhHHHHhcchhhhcccHHHHHHHHHh------hcCc
Confidence 77777788888888888888888666555444444 566667666665556555444433221111111 2222
Q ss_pred cccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhhHHHHHhcCC
Q psy15604 732 DAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDSGI 811 (986)
Q Consensus 732 ~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~ 811 (986)
+..+...-...+.+.++..+.+.+..+...++.+++
T Consensus 217 ~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~-------------------------------------------- 252 (473)
T KOG4203|consen 217 AFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILS-------------------------------------------- 252 (473)
T ss_pred hHHHHhhHHHHhhhheeeccccccccceeeehhhhh--------------------------------------------
Confidence 222222222233333333333333334433333333
Q ss_pred CCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCc
Q psy15604 812 HSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHV 891 (986)
Q Consensus 812 ~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~ 891 (986)
+|.+++. + .|....+.-.+.+++.+...+++.+.|++|+
T Consensus 253 --~L~~~~~-----------------------------~----------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~ 291 (473)
T KOG4203|consen 253 --ILAEKSY-----------------------------V----------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHP 291 (473)
T ss_pred --hhhcccc-----------------------------c----------cccccceecCCccccCCceeEeecCCcCCCC
Confidence 2333220 0 2222233446667888888899999999999
Q ss_pred hHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhccccchhhhhcCc-HHHHHHHHHHHHHHHHh
Q psy15604 892 ESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGA-IHLLVILLNRAFTDTQR 964 (986)
Q Consensus 892 ~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~ 964 (986)
...+++..+| +.+...+...|+.+..+..++|++..+.|.. ...+|+ +|.....+..++++..+
T Consensus 292 ~~~~~~~~vr--------l~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r~g~~~~~alr~~~~ 356 (473)
T KOG4203|consen 292 FSFYSDHLVR--------LVLEHGLGHLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPRSGESMETALRAACK 356 (473)
T ss_pred HHHHHHHHHH--------HHhhcccCcccceeeeEecccccchhccccc-chhccCCCCcchhHHHHHHHHHcC
Confidence 8888898888 3344444478899999999999999999988 666642 45555666666665544
No 125
>KOG1240|consensus
Probab=96.47 E-value=0.068 Score=63.87 Aligned_cols=268 Identities=16% Similarity=0.149 Sum_probs=157.5
Q ss_pred HHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc---cc-hhhhcccCcHHHHHHhhcCCCCHHHH
Q psy15604 478 VVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA---SR-HAIMNSPQMVAALVHAISNSNDLETT 553 (986)
Q Consensus 478 ~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~-~~l~~~~~~i~~L~~lL~~~~~~~~~ 553 (986)
+..|..+.++...-...+|.++.++.+++..+|..|+.+|..+...-. .- ..+.. .-+.|.|-+++.++...-++
T Consensus 447 l~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~~~~vR 525 (1431)
T KOG1240|consen 447 LQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP-EYLFPHLNHLLNDSSAQIVR 525 (1431)
T ss_pred HHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH-hhhhhhhHhhhccCccceeh
Confidence 334444555555557789999999999999999999999988744322 11 22222 25677777777664445566
Q ss_pred HHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCH
Q psy15604 554 KGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV 633 (986)
Q Consensus 554 ~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~ 633 (986)
..-+..|..|+..-. .+.+.+.-.....++++++.+. ..+ ...+.....+. .++-.....++..+.+
T Consensus 526 iayAsnla~LA~tA~---rFle~~q~~~~~g~~n~~nset-------~~~--~~~~~~~~~L~-~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 526 IAYASNLAQLAKTAY---RFLELTQELRQAGMLNDPNSET-------APE--QNYNTELQALH-HTVEQMVSSLLSDSPP 592 (1431)
T ss_pred hhHHhhHHHHHHHHH---HHHHHHHHHHhcccccCccccc-------ccc--cccchHHHHHH-HHHHHHHHHHHcCCch
Confidence 666666776654210 0000000011111334433320 000 00111112222 2333445567777778
Q ss_pred hHHHHHHHHHHHHhc--CCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHh
Q psy15604 634 KFLAIVTDCLQILAY--GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMH 711 (986)
Q Consensus 634 ~v~~~a~~aL~~L~~--~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~l 711 (986)
-|++.....+.-||. +.... ..-.++.|...|.+.| ..++.+-..-+..++.+-. ..-+++..++.|..-
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkD-w~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKD-WRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQG 664 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCcc-HHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHh
Confidence 888888888887775 21111 1124677888887775 5566554444444443321 222345677888888
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccc-cccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 712 LGHPSQRLVQNCLWTLRNLSDAGT-KVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 712 l~~~~~~v~~~al~~L~nLs~~~~-~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
+.++.+.|...|+++|.-|....- +-...-.+++...-++-+++.-||..+|.+|.
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~ 721 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIA 721 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHH
Confidence 888889999999999988874332 22333466677777788889999999999886
No 126
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.017 Score=62.61 Aligned_cols=139 Identities=15% Similarity=0.102 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc
Q psy15604 180 TTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 258 (986)
Q Consensus 180 ~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 258 (986)
--.+++..|..+++. .--|.-+.+..+++.|+++|+.++..+...+...++|+.....+.+..+.+.|.+..|++++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 344556677777776 4566777888999999999999887788889999999998888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccChh-hHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Q psy15604 259 NNVKFLAIVTDCLQILAYGNQE-SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 259 ~~~~~~~~a~~aL~~La~~~~~-~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~ 319 (986)
.++.+|....+.+..+..+.++ .+-.+...-|+..++.....+... ++.++.+.|+++..
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~-vq~q~lQilrNftc 545 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFK-VQHQVLQILRNFTC 545 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccc-cHHHHHHHHHhccc
Confidence 8889999999999999774443 345677888899999999888776 88889999999874
No 127
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.39 E-value=0.053 Score=55.75 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=111.1
Q ss_pred hcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHh--CCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcch-hHhhhCC
Q psy15604 86 LNDEDQDDADLATRAIPELIKLLNDEDQDDADLA--TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR-HAIMNSP 162 (986)
Q Consensus 86 l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~-~~i~~~~ 162 (986)
-++.+++.+..+..-|..+...-...+....+.. ...+..+...+.+....+...|+.++..++..-... +...+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-- 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-- 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH--
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH--
Confidence 3667888888877777666652211122222211 245566777777777889999999999998653222 22222
Q ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHH
Q psy15604 163 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 242 (986)
Q Consensus 163 ~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 242 (986)
.+++.|++.+.+ +...++..|..+|..+.........+ .++.+...+.+.++.++..++..+..+....+.....
T Consensus 94 ~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 257888887777 57789999999999998874411111 1456777788899999999999999998554411122
Q ss_pred HHH----cCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 243 VRL----AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 243 i~~----~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
+.. ...++.+...+.+.++.++..+-.++..+...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 222 34677888888899999999999999988653
No 128
>KOG2259|consensus
Probab=96.30 E-value=0.031 Score=62.32 Aligned_cols=268 Identities=16% Similarity=0.088 Sum_probs=164.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-C-----cc
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-H-----RQ 568 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~-----~~ 568 (986)
+..++.+..+.|..++..|+..|..|+......+. .....+..++++ +.+++..|...+.-.+. . .+
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccch
Confidence 44477888899999999999999888774432222 244556666554 67888888555544443 2 11
Q ss_pred chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 569 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
+...=....+...++..+++-.-.++..|+.+|+.+-.-+++ +...-.-++++.-++..... ........++.-+
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee----~i~QTLdKKlms~lRRkr~a-hkrpk~l~s~Gew 347 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE----IIQQTLDKKLMSRLRRKRTA-HKRPKALYSSGEW 347 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH----HHHHHHHHHHhhhhhhhhhc-ccchHHHHhcCCc
Confidence 222222244566777778877778888888888776533322 22111112222211110000 0000011111111
Q ss_pred --C-----------CcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCC
Q psy15604 649 --G-----------NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHP 715 (986)
Q Consensus 649 --~-----------~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~ 715 (986)
+ ..+....++..|+-..++.-+.+.- -+++.++...++.|+..... +. ..+++.|++.++++
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ssP~---FA-~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSSPG---FA-VRALDFLVDMFNDE 422 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCCCC---cH-HHHHHHHHHHhccH
Confidence 0 0122334566666666666665544 35778888899999876432 21 13688899999999
Q ss_pred CHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHh
Q psy15604 716 SQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVN 782 (986)
Q Consensus 716 ~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~ 782 (986)
...|+..|+.+|+.|+.. ....+.-++.+...+.+..+++|.+.-..|.|.--.+-+++...+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~---l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVH---LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred HHHHHHHHHHHHHHHHHH---heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999965 4445667788888899999999999999999866666666655443
No 129
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.30 E-value=0.02 Score=48.83 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhccChhhHHHHHhC
Q psy15604 221 VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG--RNNVKFLAIVTDCLQILAYGNQESKLIILAS 288 (986)
Q Consensus 221 ~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~ 288 (986)
.+...++.|+|++..++..+..+.+.|+++.+++.-. ..+|-.++.+..++.+|..++++++..+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999999999999999999999999864 4679999999999999999999999876543
No 130
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.25 E-value=0.083 Score=49.04 Aligned_cols=125 Identities=13% Similarity=0.217 Sum_probs=96.0
Q ss_pred hHHHhCCCHHHHHHHHccCC------HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCC-CHHHHHHHHHH
Q psy15604 115 DADLATRAIPELIKLLNDED------QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSN-DLETTKGAVGT 187 (986)
Q Consensus 115 ~~i~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~ 187 (986)
..++..||+..|+++..++. .++...++.++..|-.+.-..=..... .++..++...+... |..+.+.|+.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~-~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSD-SFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccH-HHHHHHHHHHccccccchHHHHHHHH
Confidence 35677889999999999876 477888888888888765322222222 37788888887544 78999999999
Q ss_pred HHhhccCccc-hHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCch
Q psy15604 188 LHNLSHHRQG-LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK 240 (986)
Q Consensus 188 L~~ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 240 (986)
|-++..++.. ...+.++=-++.|+..|+.++++++.++...+..|....++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 9999998655 5555555678999999999999999999999988876655443
No 131
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.23 E-value=0.25 Score=50.42 Aligned_cols=232 Identities=13% Similarity=0.094 Sum_probs=142.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCccchHHHHhc-
Q psy15604 127 IKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQGLLAIFKS- 204 (986)
Q Consensus 127 ~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~- 204 (986)
-+++..-++-.+..|.+++.++...++-|..+..+..+-..+++.+++. .+...+...+-+++-++.+++..+.+-+.
T Consensus 155 gkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 155 GKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3455555677889999999999999999988877666667788888764 35788999999999999998877444332
Q ss_pred CChHHHHHhhCCC-CHhHHHHHHHHHHHHhcCCC-CchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHH---------
Q psy15604 205 GGIPALVKLLSSP-VESVLFYAITTLHNLLLHQE-GSKMAVRLAGGLQKMVLLLGR---NNVKFLAIVTDC--------- 270 (986)
Q Consensus 205 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~a~~a--------- 270 (986)
..+.-|+.+.... ...+...++..+.|++...+ +.-....-.|-+.+-++.|.. .++++....-..
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 3455566666543 34567788888999994232 222223334434444444422 223222211111
Q ss_pred --------HHHHhc----cC---------hhhHHHHHhC--CCHHHHHHHHhcCChHH-HHHHHHHHHHHhhhCCCChHH
Q psy15604 271 --------LQILAY----GN---------QESKLIILAS--QGPVELVRIMRSYDYEK-LLWCTSRVLKVLSVCSSNKPA 326 (986)
Q Consensus 271 --------L~~La~----~~---------~~~~~~~~~~--g~v~~L~~ll~~~~~~~-~~~~a~~aL~~Ls~~~~~~~~ 326 (986)
+..|-. -+ ..+-..+.+. ..+..|.+++++..+.. +..++-......-..|+....
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence 111110 00 1222333332 23567778888765542 222222222223345666677
Q ss_pred HHHhccHHHHHHHhCCCCHHHHHHHHHHHhcc
Q psy15604 327 IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 358 (986)
Q Consensus 327 i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~l 358 (986)
+...|+-+.++.++.++++++..+|+.++..+
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 88999999999999999999999988877554
No 132
>KOG1240|consensus
Probab=96.22 E-value=0.31 Score=58.62 Aligned_cols=207 Identities=18% Similarity=0.123 Sum_probs=128.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCC---CC
Q psy15604 536 MVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ---EG 610 (986)
Q Consensus 536 ~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~---~~ 610 (986)
++..+...++.-...+.+..|+..|..++. +++.+- ...+|.++.++.++...||..|+.+|..+...- +.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 456666666666678899999999999987 333321 346899999999999999999999998887542 22
Q ss_pred ChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHh
Q psy15604 611 SKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 689 (986)
Q Consensus 611 ~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~L 689 (986)
.-..+...-.+|.|-.++.+ ....++..-+.+|..|+.. ..+ +.....-.....++...+.+...+
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A~r--Fle~~q~~~~~g~~n~~nset~~~--------- 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--AYR--FLELTQELRQAGMLNDPNSETAPE--------- 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH--HHH--HHHHHHHHHhcccccCcccccccc---------
Confidence 33344445567778888877 4455666667777777642 111 111000000011122222110000
Q ss_pred hcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHH
Q psy15604 690 SVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVIT 760 (986)
Q Consensus 690 s~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~ 760 (986)
.......+.+.+ ++-+....++..+++.|++..+..|.-|+-.-.+...++-++..|+.+|++.|+.+|-
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~ 635 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRG 635 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHH
Confidence 000111123332 3444555677777777887778888888855556666778899999999999988884
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.18 E-value=0.0085 Score=45.35 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHH
Q psy15604 178 LETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232 (986)
Q Consensus 178 ~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 232 (986)
+.+|..|+.+|++++........-....+++.|+.+|.+++++++..|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987754444445567999999999999999999999999875
No 134
>KOG0567|consensus
Probab=96.12 E-value=0.65 Score=46.50 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhh
Q psy15604 495 IPELIKLLNDED--QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA 572 (986)
Q Consensus 495 i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 572 (986)
+..+.+.|.... ..-+.+|...|+++... +.+..+.+.+..+ +...+.+.+.+|+.+.
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~-s~llkhe~ay~LgQ~~-------- 64 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDD-SALLKHELAYVLGQMQ-------- 64 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccc-hhhhccchhhhhhhhc--------
Confidence 444555554432 23344566666655432 2355555544333 4445556665665553
Q ss_pred hhccCChHHHHHhcCCC--CHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 573 IFKSGGIPALVKLLSSP--VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
...++|.++..|... .+-++..|..+|+++. + ...++.+-+..+++...+...|-.++..+-+.+
T Consensus 65 --~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 65 --DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred --cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 345788888877553 4568888999988887 2 233455556665666677777777777776532
Q ss_pred cccH----HHH--HhC------CChHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCH
Q psy15604 651 QESK----LII--LAS------QGPVELVRIMRSYD-YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ 717 (986)
Q Consensus 651 ~~~~----~~~--~~~------~~~~~L~~ll~~~~-~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~ 717 (986)
.-.+ ... .++ .-+..+-..+.+.+ +.--+..+...|.|+.. ..++.+|.+-+..+|.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSA 201 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchH
Confidence 1000 000 111 11334444343332 22223333333333322 1355667777777888
Q ss_pred HHHHHHHHHHHHhhcccccccchhchHHHHHHHhcc--CChhhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 718 RLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLAS--QDINVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 718 ~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~--~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
-.+..+..+++-|-+ .-.++.|...|.+ +++-+|.+|+.+|+ +-|+++++..|-..
T Consensus 202 lfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALG--aIa~e~~~~vL~e~ 259 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALG--AIADEDCVEVLKEY 259 (289)
T ss_pred HHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHH--hhcCHHHHHHHHHH
Confidence 888889999987642 3456777777765 47889999999999 44789999888765
No 135
>KOG0567|consensus
Probab=96.11 E-value=0.61 Score=46.69 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=137.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhCCccchhh
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQGLLA 572 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~-~~~~~~~~a~~~L~~ls~~~~~~~~ 572 (986)
.+..+.+...+++.......+.+|++.... ..++.+++.|... ..|-++.+|+.+|.++.. +
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-----------~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----- 99 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQMQDE-----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----- 99 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhhhccc-----------hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h-----
Confidence 366666666666555666677777665432 5688899988543 457889999999998862 2
Q ss_pred hhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChH-----HH-------HHhCcHHHHHHhhcC-CCHhHHH-H
Q psy15604 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM-----AV-------RLAGGLQKMVLLLGR-NNVKFLA-I 638 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-----~v-------~~~g~v~~Lv~ll~~-~~~~v~~-~ 638 (986)
..++.+-++.+++...+++.+..++..+-+.....+. .. ...+-+..|-..+.+ +.+.+.+ .
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 3456666777777788888777777777654321110 00 011223333333332 3333333 2
Q ss_pred HHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCC--CC
Q psy15604 639 VTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH--PS 716 (986)
Q Consensus 639 a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~--~~ 716 (986)
+...|+|+... ..+..|.+-+...+ .-.++.+..+++.|-+- .+++.|.+.|.. ..
T Consensus 176 amF~LRn~g~E-----------eaI~al~~~l~~~S-alfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~ 233 (289)
T KOG0567|consen 176 AMFYLRNIGTE-----------EAINALIDGLADDS-ALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEH 233 (289)
T ss_pred hhhHhhccCcH-----------HHHHHHHHhcccch-HHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcc
Confidence 33344443221 12333333344343 55667777777766442 356666666643 46
Q ss_pred HHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 717 QRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 717 ~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
+-++..|+.+|+.+.+ +..++.|..++.++++-+++.|.-+|.
T Consensus 234 pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 234 PMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8999999999999875 567888999999988888888887776
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.07 E-value=2.1 Score=48.37 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=81.7
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccc--------hhhhhc----cCChHHHHHhcCCCCHhHHHHHHHHH
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQG--------LLAIFK----SGGIPALVKLLSSPVESVLFYAITTL 601 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~--------~~~i~~----~~~i~~Lv~lL~~~~~~v~~~a~~aL 601 (986)
..+..|+++|.+ +++...++..+.-+..+ ++. .+.+++ ...+|.+++-.+..+.+.+...+.+|
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 456777777754 67788888888888764 322 222333 33467777777777777899999999
Q ss_pred HHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcc
Q psy15604 602 HNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE 652 (986)
Q Consensus 602 ~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~ 652 (986)
.++..+-|..--.-.-...+|.|++.|..+++.++..+..+|..+..+.++
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 999987763221112245678888999889999999999999999886533
No 137
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.01 E-value=3.3 Score=46.78 Aligned_cols=357 Identities=15% Similarity=0.157 Sum_probs=176.4
Q ss_pred HHHHHHHccCCH---HHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccch-
Q psy15604 124 PELIKLLNDEDQ---VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGL- 198 (986)
Q Consensus 124 ~~L~~ll~~~~~---~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~- 198 (986)
|.|...|.+.++ .....+..+|..+|.++..-+.+.. .++..+-...+.+.+.+.....+.+|.++... .+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 556667766543 6778889999999998876665544 24455544455444666777777888877554 2222
Q ss_pred ----HHHHhcCChHHHHHhhCCC-------CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc----------
Q psy15604 199 ----LAIFKSGGIPALVKLLSSP-------VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG---------- 257 (986)
Q Consensus 199 ----~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~---------- 257 (986)
....+...+|.+.++.... ++.+...+...+..+...-+..++.-. +..+..++-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCc
Confidence 3334445788887776321 244555555666555544332222211 333333332
Q ss_pred c------CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhc
Q psy15604 258 R------NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAG 331 (986)
Q Consensus 258 ~------~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g 331 (986)
. ...........+++.+- ++..-. -....+..++.+..+.+.+..+..+.+.+..+.+--.....+ ..
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~ 229 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DE 229 (415)
T ss_pred cccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HH
Confidence 0 11223333344444442 222110 011245677777766665556777777777666421111100 01
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHh-----hChhhHHHHHhcCCcHHHH
Q psy15604 332 GMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELA-----QDKEGAETIEAEGATAPLT 406 (986)
Q Consensus 332 ~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~-----~~~~~~~~l~~~g~l~~Lv 406 (986)
.+..+...... ...+..+..+..++.-++ ++..... ..+..|+
T Consensus 230 ~l~~~~~~~~~---------------------------~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~ 277 (415)
T PF12460_consen 230 FLDSLLQSISS---------------------------SEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLL 277 (415)
T ss_pred HHHHHHhhhcc---------------------------cCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHH
Confidence 11222211100 111122222222222221 2211111 2355567
Q ss_pred HHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCc
Q psy15604 407 DLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQD 486 (986)
Q Consensus 407 ~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~ 486 (986)
.++.++. ....++....+. +.+ ..++... .....++.|. ++-+
T Consensus 278 ~lL~~~~--~g~~aA~~f~il------------~~d-----~~~~l~~----~~~a~vklLy------kQR~-------- 320 (415)
T PF12460_consen 278 ELLSSPE--LGQQAAKAFGIL------------LSD-----SDDVLNK----ENHANVKLLY------KQRF-------- 320 (415)
T ss_pred HHhCChh--hHHHHHHHHhhH------------hcC-----cHHhcCc----cccchhhhHH------hHHH--------
Confidence 7776632 333333333222 110 0000000 0001111111 0011
Q ss_pred hhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC
Q psy15604 487 DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 566 (986)
Q Consensus 487 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~ 566 (986)
-...+|.+++..+..+.+.+.....+|..+.++-+.-.-.-+-+.++|.+++.|... +++++..+..+|..+...
T Consensus 321 ----F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 321 ----FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEE 395 (415)
T ss_pred ----HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHc
Confidence 123378888888887777888888889888776542111112246888899988654 778999999888888764
No 138
>KOG1943|consensus
Probab=95.87 E-value=6.1 Score=47.71 Aligned_cols=243 Identities=14% Similarity=0.079 Sum_probs=130.9
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCC-HHHHHHHHHHHHHhcccCcch
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDED-QVVVSQAAMMVHQLSKKEASR 155 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~la~~~~~~ 155 (986)
+.++.|.+.++..+..++..|++.++.++.-+. .-+...+|...+.++.-.+ +..-+-++-+|+.|+..--..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp------~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP------PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc------HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 678888888899999999999999888876221 2244455666666665443 566677899999999764332
Q ss_pred hHhhhCCchHHHHHHHHhc-------CCCHHHHHHHHHHHHhhccCc--cchHHHHhcCChHHHHHhhCCCCHhHHHHHH
Q psy15604 156 HAIMNSPQMVAALVHAISN-------SNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIPALVKLLSSPVESVLFYAI 226 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv~lL~~-------~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 226 (986)
....+. +++.++..|.- .....+|..|+-+++.++... ..-+.+.+.=.-..|+..+-+..-.++..|.
T Consensus 415 ps~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 222222 34555555532 123468999999999987762 2222222211112233344555666788888
Q ss_pred HHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcC---C-
Q psy15604 227 TTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY---D- 302 (986)
Q Consensus 227 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~---~- 302 (986)
.++........+.- -|++.+ ...+.-....+..+-..++.-....+..+ .++++-+-.+ .
T Consensus 493 AAlqE~VGR~~n~p------~Gi~Li-s~~dy~sV~~rsNcy~~l~~~ia~~~~y~---------~~~f~~L~t~Kv~HW 556 (1133)
T KOG1943|consen 493 AALQENVGRQGNFP------HGISLI-STIDYFSVTNRSNCYLDLCVSIAEFSGYR---------EPVFNHLLTKKVCHW 556 (1133)
T ss_pred HHHHHHhccCCCCC------Cchhhh-hhcchhhhhhhhhHHHHHhHHHHhhhhHH---------HHHHHHHHhcccccc
Confidence 88877762222111 122111 11111111122222222221111122222 3333322221 1
Q ss_pred hHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHH
Q psy15604 303 YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQR 346 (986)
Q Consensus 303 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~ 346 (986)
+..+++.++.+|..|+.-. .+....+.++.++....+++..
T Consensus 557 d~~irelaa~aL~~Ls~~~---pk~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTE---PKYLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhh---HHhhcccchhhhhhhhcCCChH
Confidence 2458999999998887422 3344556677777666554443
No 139
>KOG0414|consensus
Probab=95.65 E-value=7.9 Score=47.33 Aligned_cols=143 Identities=18% Similarity=0.179 Sum_probs=110.2
Q ss_pred CCHHHHHHHhc----CCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCcc
Q psy15604 493 RAIPELIKLLN----DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ 568 (986)
Q Consensus 493 ~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~ 568 (986)
.-.|.+++.++ ..+|++|..|.-+|+.+..-.. .+.+ ..+|.|+..|..+++|-++-++.-+++.++..-.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fce--s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCE--SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHH--HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 34566777774 3589999999999998844332 1222 4588999999888899999999999999987322
Q ss_pred chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 569 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
+.. ...-+.|.+.|++.++.++..|+.+|.+|. ..+++.-.|.+..+..++.++++++...|-.....|+.
T Consensus 994 nli----e~~T~~Ly~rL~D~~~~vRkta~lvlshLI-----LndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 994 NLI----EPWTEHLYRRLRDESPSVRKTALLVLSHLI-----LNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc----chhhHHHHHHhcCccHHHHHHHHHHHHHHH-----HhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 211 124567788899999999999999999999 56677778999999999999999988887766666665
Q ss_pred C
Q psy15604 649 G 649 (986)
Q Consensus 649 ~ 649 (986)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 3
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.58 E-value=0.2 Score=46.57 Aligned_cols=122 Identities=13% Similarity=0.217 Sum_probs=96.2
Q ss_pred hcCCHHHHHHHhcCCC------HHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHh
Q psy15604 491 ATRAIPELIKLLNDED------QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNL 563 (986)
Q Consensus 491 ~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~-~~~~~~~a~~~L~~l 563 (986)
..+++..|++++.++. .++...++.++..|-.+.-.-...+. ..+|..++.+..... ++.+...|..+|-++
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~ 87 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAILESI 87 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHHHHH
Confidence 3788999999888765 47778889999998887653334444 378888888886543 688999999999999
Q ss_pred hCCccc-hhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChH
Q psy15604 564 SHHRQG-LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 613 (986)
Q Consensus 564 s~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 613 (986)
..++.. ...+.+.=.++.|+.+|+.++++++.+++..+..|....++.++
T Consensus 88 Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 88 VLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 985554 55566677899999999999999999999999888877765433
No 141
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.56 E-value=7.1 Score=46.29 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=115.8
Q ss_pred HccCCHHHHHHHH-HHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChH
Q psy15604 130 LNDEDQVVVSQAA-MMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIP 208 (986)
Q Consensus 130 l~~~~~~~~~~a~-~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~ 208 (986)
+.+++...+..|. +++..|+..++.. -+++.+++... +.|.++++..---|.+.+...+....+ ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms-------sLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS-------SLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence 5555555555554 5667777665521 14577777777 479999998888888887773322222 567
Q ss_pred HHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhC
Q psy15604 209 ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS 288 (986)
Q Consensus 209 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~ 288 (986)
.+..=++++++.+|..|+++++.+- .. .+. ...++++.+++.++++.++..|+.|+..+-.-++ ....+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~-~~-----el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR-VK-----ELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC-hH-----HHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcc
Confidence 7888888999999999999987665 11 122 3467889999999999999999999999875443 445566
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHhh
Q psy15604 289 QGPVELVRIMRSYDYEKLLWCTSRVLKVLS 318 (986)
Q Consensus 289 g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls 318 (986)
|.+..+..++...++. +..+|..+|..+-
T Consensus 166 g~~~~l~~l~~D~dP~-Vi~nAl~sl~~i~ 194 (757)
T COG5096 166 GLIDILKELVADSDPI-VIANALASLAEID 194 (757)
T ss_pred cHHHHHHHHhhCCCch-HHHHHHHHHHHhc
Confidence 6777777777666654 6666666665553
No 142
>KOG4535|consensus
Probab=95.50 E-value=0.73 Score=49.81 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=68.5
Q ss_pred hhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhhhccccchh---------------hhcc--cCcHHHHHHhhcCCCCHH
Q psy15604 490 LATRAIPELIK-LLNDEDQVVVSQAAMMVHQLSKKEASRHA---------------IMNS--PQMVAALVHAISNSNDLE 551 (986)
Q Consensus 490 ~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~---------------l~~~--~~~i~~L~~lL~~~~~~~ 551 (986)
..+++-|.|+- -++++++..+..|+.++..+.......-. .+.. ......|+..|.....+.
T Consensus 43 ~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~ 122 (728)
T KOG4535|consen 43 TPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQ 122 (728)
T ss_pred CCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 34666777665 37888899988888888776443321000 0000 012334445554555678
Q ss_pred HHHHHHHHHHHhhC-Cccchhhhh-ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCC
Q psy15604 552 TTKGAVGTLHNLSH-HRQGLLAIF-KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 608 (986)
Q Consensus 552 ~~~~a~~~L~~ls~-~~~~~~~i~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 608 (986)
+...+..+|.++.. .+-.+-.+- -...+..+-.++++.++.++..++..++-+....
T Consensus 123 ~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 123 TVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 88889999999987 332222111 1122233344566777777777777777666543
No 143
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.44 Score=55.94 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=118.0
Q ss_pred cCCCCHhHHHHHHH-HHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChH
Q psy15604 586 LSSPVESVLFYAIT-TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPV 664 (986)
Q Consensus 586 L~~~~~~v~~~a~~-aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 664 (986)
+.+.+...+..|+. ++..+..+.+ . .-..+.+++...+.+.++++.+---|.+....+| ...++ .+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHH
Confidence 55555666666665 4566664444 1 2335667777777888999888777777777655 22222 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchH
Q psy15604 665 ELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLL 744 (986)
Q Consensus 665 ~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l 744 (986)
.+.+=+++++ +.++..|.+.++-+-. ..+++ ..++.+.++++++++.|++.|.-|+.++-+...++....|.+
T Consensus 96 ti~kDl~d~N-~~iR~~AlR~ls~l~~-----~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 96 TIQKDLQDPN-EEIRGFALRTLSLLRV-----KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHhhccCCC-HHHHHHHHHHHHhcCh-----HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 4455566666 7788776666665543 44443 367889999999999999999999999987777777778899
Q ss_pred HHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 745 QSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 745 ~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
..+..++.++||.+..+|..+|..|
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHh
Confidence 9999999999999999999888754
No 144
>KOG1058|consensus
Probab=95.22 E-value=2.2 Score=49.08 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=84.0
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHH-HHHhcCCCHHHHHHHHHHHHhhccCccchHH
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV-HAISNSNDLETTKGAVGTLHNLSHHRQGLLA 200 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 200 (986)
.+|.+..-|.+...-+|++|.-++..+-.+ -+.+... . |.|+ +.|....|+.+++.|...|... +++....
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pD--a-peLi~~fL~~e~DpsCkRNAFi~L~~~--D~ErAl~ 206 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPD--A-PELIESFLLTEQDPSCKRNAFLMLFTT--DPERALN 206 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCC--h-HHHHHHHHHhccCchhHHHHHHHHHhc--CHHHHHH
Confidence 445556666777888888887777766654 1223222 2 4443 4555557888888888777665 3333332
Q ss_pred HHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 201 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
... .-+.-..+-++.++...+..++..|..++.. +...|+.+..+|.+.++.+.-.++.+|-+|+.+
T Consensus 207 Yl~-----~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 207 YLL-----SNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred HHH-----hhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 211 1112223335667777778888877444322 234578888888887777777777777777653
No 145
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.12 E-value=0.31 Score=49.54 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHH
Q psy15604 220 SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIM 298 (986)
Q Consensus 220 ~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll 298 (986)
.....|++.|.-++.-+++.+..+.+..++..++.+|.. ..+.++..+..+|..+-.+++.+...|-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 356778899999999999999999999999999999954 5688888888888888778999999999999999999999
Q ss_pred hcCCh-HHHHHHHHHHHHHhh
Q psy15604 299 RSYDY-EKLLWCTSRVLKVLS 318 (986)
Q Consensus 299 ~~~~~-~~~~~~a~~aL~~Ls 318 (986)
+.... ..++..+...|+.+.
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 98643 557766666665543
No 146
>KOG4151|consensus
Probab=95.02 E-value=0.6 Score=54.14 Aligned_cols=226 Identities=15% Similarity=0.064 Sum_probs=136.4
Q ss_pred cccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHH-hhccCccchHHHHhcCChHHHHHhhCCCCHh-HHHHHH
Q psy15604 149 SKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH-NLSHHRQGLLAIFKSGGIPALVKLLSSPVES-VLFYAI 226 (986)
Q Consensus 149 a~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~ 226 (986)
|.....|...++.|| ...|+.+... ..+..+.....+|. .+... ..+. ..+++++...++..... -...++
T Consensus 491 A~~K~~~~~~Ik~~~-~~aLlrl~~~-q~e~akl~~~~aL~~~i~f~-~~~~----~~v~~~~~s~~~~d~~~~en~E~L 563 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGG-YEALLRLGQQ-QFEEAKLKWYHALAGKIDFP-GERS----YEVVKPLDSALHNDEKGLENFEAL 563 (748)
T ss_pred hhhHHhcCccccccH-HHHHHHHHHH-hchHHHHHHHHHHhhhcCCC-CCch----hhhhhhhcchhhhhHHHHHHHHHH
Confidence 455566677777776 5999997766 45677777888887 22221 1111 12455555555433222 245788
Q ss_pred HHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHh-CCCHHHHHHHHhcCChHH
Q psy15604 227 TTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA-SQGPVELVRIMRSYDYEK 305 (986)
Q Consensus 227 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~~ 305 (986)
.++.||+..++..++.+.+.-+++.+-.++..+++..|..+...+.||..+.--....+.+ ....+.....+.. ..+.
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~ 642 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEK 642 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhH
Confidence 9999999888888888988888888888888899999999999999998854444444555 3343433333333 3343
Q ss_pred HHHHHHHHHHHhhh-CCCChH-HHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHH
Q psy15604 306 LLWCTSRVLKVLSV-CSSNKP-AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLL 383 (986)
Q Consensus 306 ~~~~a~~aL~~Ls~-~~~~~~-~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L 383 (986)
...++++++..+.. ...+.. ...-......+. .++.+.++++|.....+.
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~----------------------------~~i~~~~~~~qhrgl~~~ 694 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILV----------------------------RAIQDEDDEIQHRGLVII 694 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHH----------------------------HhhcCchhhhhhhhhhhh
Confidence 44444455442322 111111 111122223333 333456777888888888
Q ss_pred HHHhh-ChhhHHHHHhcCCcHHHHHHhc
Q psy15604 384 CELAQ-DKEGAETIEAEGATAPLTDLLH 410 (986)
Q Consensus 384 ~~l~~-~~~~~~~l~~~g~l~~Lv~ll~ 410 (986)
.++.. ..+....+.+...++.+..+..
T Consensus 695 ln~~~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 695 LNLFEALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred hhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 87542 3366666666666555555443
No 147
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.99 E-value=0.047 Score=47.93 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=60.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHh
Q psy15604 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 233 (986)
Q Consensus 164 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 233 (986)
++..|+++|..+.|+.+..-|+.=|..+... |.++..+-+.|+=+.+++++.+++++++..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4788999996656888999999999999988 888888888899999999999999999999999998776
No 148
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.94 E-value=3.5 Score=49.56 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=112.2
Q ss_pred HhCCCHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHh---cCCC----HHHHHHHH
Q psy15604 118 LATRAIPELIKLLND-----EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS---NSND----LETTKGAV 185 (986)
Q Consensus 118 ~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~---~~~~----~~~~~~a~ 185 (986)
.+.|++..++.++.+ .+.......+++|...+..+.+|+.+.+.++ ++.|++.|+ .... .++-+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~a-l~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNA-LNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHhCccccccchHHHHHH
Confidence 457899999988875 3456677778888888889999999999876 698888775 2222 45555555
Q ss_pred HHHHhhccCccch-----HHHHhcC--------ChHHHHHhhCCC----CHhHHHHHHHHHHHHhcCCCCchHHHHHcCc
Q psy15604 186 GTLHNLSHHRQGL-----LAIFKSG--------GIPALVKLLSSP----VESVLFYAITTLHNLLLHQEGSKMAVRLAGG 248 (986)
Q Consensus 186 ~~L~~ls~~~~~~-----~~i~~~g--------~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~ 248 (986)
.++-.+....... ....... -+..|++.+.++ ++.+....+++|-.|+.++++.-..+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 5555554331111 1111122 266777777654 57788999999999998776544444311
Q ss_pred HHHHHHHh--ccCCHHHHHHHHHHHHHHhcc------ChhhHHHHHhCCCHHHHHHHHhcC
Q psy15604 249 LQKMVLLL--GRNNVKFLAIVTDCLQILAYG------NQESKLIILASQGPVELVRIMRSY 301 (986)
Q Consensus 249 i~~L~~ll--~~~~~~~~~~a~~aL~~La~~------~~~~~~~~~~~g~v~~L~~ll~~~ 301 (986)
+.+.+++= +......-.....+++.++.+ ....|..+.+.|.+...++.+..+
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~ 331 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH 331 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence 12211211 111111113346667766642 145788899999999888877654
No 149
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.84 E-value=0.04 Score=48.31 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=60.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhc
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLL 606 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 606 (986)
.++..|+++|..+.++.+..-|+.=|+.+.. .|.++..+-+.|+-..+.+++.+++++|+.+|+.+++.+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5688899999766678888888888888888 78888888889999999999999999999999999988764
No 150
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.79 E-value=6.4 Score=43.41 Aligned_cols=128 Identities=17% Similarity=0.265 Sum_probs=92.9
Q ss_pred HHh-CCCHHHHHHHHccCC---HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHh-cC--CCHHHHHHHHHHHH
Q psy15604 117 DLA-TRAIPELIKLLNDED---QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS-NS--NDLETTKGAVGTLH 189 (986)
Q Consensus 117 i~~-~g~i~~L~~ll~~~~---~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~-~~--~~~~~~~~a~~~L~ 189 (986)
+++ ......|...++... +.+-..|+.++..+-.++...-.+....|+++.+++.+. .+ .+.++....-.++.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 344 333455666666553 778899999999988877555555555568899999888 32 46788888889999
Q ss_pred hhccCccchHHHHhcCChHHHHHhhCCCC-------HhHHHHHHHHHHHHhcCCCCchHHHH
Q psy15604 190 NLSHHRQGLLAIFKSGGIPALVKLLSSPV-------ESVLFYAITTLHNLLLHQEGSKMAVR 244 (986)
Q Consensus 190 ~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~~L~~~~~~~~~~i~ 244 (986)
.+|.+..+.+.+.+.+.++.+++++.+++ .+.-...-..+-.|.++++..|..+.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999987642 12333344556667777776665544
No 151
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.13 E-value=0.24 Score=48.38 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHhcccCcchhHhhhC---------------CchHHHHHHHHhcC-----CCHHHHHHHHHHHHhhc
Q psy15604 133 EDQVVVSQAAMMVHQLSKKEASRHAIMNS---------------PQMVAALVHAISNS-----NDLETTKGAVGTLHNLS 192 (986)
Q Consensus 133 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~---------------~~~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~ls 192 (986)
++......++.+|.|++..+.....+.+. +..+..|+.++..+ +...-..+.+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34446677888999999887666644322 22467788777652 23456778888999999
Q ss_pred cCccchHHHHhc--CC--hHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHH
Q psy15604 193 HHRQGLLAIFKS--GG--IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 244 (986)
Q Consensus 193 ~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 244 (986)
..+++|..+.+. +. +..|+...++.+..-+.-++.+|.|+|.+.+ ....+.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~-~H~~LL 141 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD-SHEWLL 141 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh-HHHHhc
Confidence 999999999876 34 6777788888877777889999999995544 444333
No 152
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.12 E-value=0.15 Score=43.67 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=51.5
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc--ccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 703 GGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--VDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 703 g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~--~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
..++.++..+.+++.+||..|+.+|.|++..... ......+.+.|.+++.++|+++|..| ..|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLD 92 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHH
Confidence 4788888999999999999999999999954432 22356888999999999999998766 4443
No 153
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.90 E-value=2.1 Score=43.46 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHHhhccC-ccchHHHHhc-CChHHHHHh-------hCCCC--H---hHHHHHHHHHHHHhcCCCCchH
Q psy15604 176 NDLETTKGAVGTLHNLSHH-RQGLLAIFKS-GGIPALVKL-------LSSPV--E---SVLFYAITTLHNLLLHQEGSKM 241 (986)
Q Consensus 176 ~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~-g~i~~Lv~l-------L~~~~--~---~~~~~a~~~L~~L~~~~~~~~~ 241 (986)
.+++.|+.|+.-|+.--.. ++-...+... |.+..|++= ++.+. + .-..+|+..|.-++ .+++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vA-shpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVA-SHPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHH-H-TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHH-cChHHHH
Confidence 3567888887777665443 4545445544 767666533 33321 1 33567777778888 5778999
Q ss_pred HHHHcCcHHHHHHHhccCC-----HHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHH
Q psy15604 242 AVRLAGGLQKMVLLLGRNN-----VKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLK 315 (986)
Q Consensus 242 ~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~ 315 (986)
.+.++...--|..+|...+ +.++-.+...++.|.. ++++.-..+.+.+.+|..++.+..++.- .+..|...+.
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel-SKtvAtfIlq 164 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL-SKTVATFILQ 164 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH-HHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH-HHHHHHHHHH
Confidence 9998988777777775422 4456667777888876 6778888899999999999999988653 4555556654
Q ss_pred HhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHH
Q psy15604 316 VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAET 395 (986)
Q Consensus 316 ~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 395 (986)
.+-.++ .|+..+.+ +.+--.+....|.++. ..+....++.+-....++-..|+.++..+..
T Consensus 165 KIL~dd---------~GL~yiC~-----t~eRf~av~~vL~~mV-----~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 165 KILLDD---------VGLNYICQ-----TAERFFAVAMVLNKMV-----EQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHSH---------HHHHHHTS-----SHHHHHHHHHHHHHHH-----HHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHcch---------hHHHHHhc-----CHHHHHHHHHHHHHHH-----HHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 443222 22222211 1111112222222221 1122355677888888888899888877776
Q ss_pred HH
Q psy15604 396 IE 397 (986)
Q Consensus 396 l~ 397 (986)
+.
T Consensus 226 L~ 227 (262)
T PF04078_consen 226 LR 227 (262)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 154
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.84 E-value=0.86 Score=44.48 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcH-HHHHH
Q psy15604 549 DLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGL-QKMVL 626 (986)
Q Consensus 549 ~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v-~~Lv~ 626 (986)
++.++..+..+++.|+. .+... ...+|.+...|+++++.+|..|+.+|.+|....- +.-.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 46788889999998887 33222 2457899999999999999999999999985422 2212333 67788
Q ss_pred hhcCCCHhHHHHHHHHHHHHhcC
Q psy15604 627 LLGRNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 627 ll~~~~~~v~~~a~~aL~~L~~~ 649 (986)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998875
No 155
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.83 E-value=0.16 Score=49.60 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=59.4
Q ss_pred CcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhCCccchhhhhcc--CC--hHHHHHhcCCCCHhHHHHHHHHHHHhh
Q psy15604 535 QMVAALVHAISN-----SNDLETTKGAVGTLHNLSHHRQGLLAIFKS--GG--IPALVKLLSSPVESVLFYAITTLHNLL 605 (986)
Q Consensus 535 ~~i~~L~~lL~~-----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~--~~--i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 605 (986)
..+..|++.+.. .+..+-....+.+|.|++..++++..+.+. +. +..|+.+.++.+..-+.-++.+|.|+|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 467778887754 233455667788999999999999998863 33 677788888887778888999999999
Q ss_pred cCCCCC
Q psy15604 606 LHQEGS 611 (986)
Q Consensus 606 ~~~~~~ 611 (986)
++.+..
T Consensus 132 Fd~~~H 137 (192)
T PF04063_consen 132 FDTDSH 137 (192)
T ss_pred ccHhHH
Confidence 877643
No 156
>KOG3036|consensus
Probab=93.70 E-value=1.8 Score=42.82 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHH-HHHhc----CCCHHHHHHHHHHHHhhccCc--cchHHHHhcCCh
Q psy15604 135 QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV-HAISN----SNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGI 207 (986)
Q Consensus 135 ~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv-~lL~~----~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i 207 (986)
+.=.+++...|..++.+++.|..+.+.. + |..+ .+|.. .+.+..|..+++.++.|..++ +-...+...++|
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~-i-PlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAH-I-PLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHcc-C-hhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 4456788899999999999999999875 3 5433 44543 245779999999999998873 344566778999
Q ss_pred HHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchH---HHHHcCcHHH----HH-HHhccCCHHHHHHHHHHHHHHhccCh
Q psy15604 208 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM---AVRLAGGLQK----MV-LLLGRNNVKFLAIVTDCLQILAYGNQ 279 (986)
Q Consensus 208 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~---~i~~~g~i~~----L~-~ll~~~~~~~~~~a~~aL~~La~~~~ 279 (986)
|..++.+..+++..+..|+.++..+..++..... ...+..+|.. ++ ++.+.+++++...+.++...|+. ++
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-np 249 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NP 249 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CH
Confidence 9999999999999999999999888855543221 1122222222 22 22244667777777777777765 45
Q ss_pred hhHHHH
Q psy15604 280 ESKLII 285 (986)
Q Consensus 280 ~~~~~~ 285 (986)
..|..+
T Consensus 250 rar~aL 255 (293)
T KOG3036|consen 250 RARAAL 255 (293)
T ss_pred HHHHHH
Confidence 455443
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.63 E-value=0.23 Score=42.43 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=50.6
Q ss_pred cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHH
Q psy15604 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQIL 646 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L 646 (986)
...+++++..+.+++..||.+|+.+|+|++....+.- ...-......|.+++.++++.|+..| +.|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4568999999999999999999999999996543211 11224566778888888888887665 445444
No 158
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.59 E-value=4.6 Score=44.50 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=79.8
Q ss_pred HHHh-cCChHHHHHhhCCC---CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc-c---CCHHHHHHHHHHH
Q psy15604 200 AIFK-SGGIPALVKLLSSP---VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG-R---NNVKFLAIVTDCL 271 (986)
Q Consensus 200 ~i~~-~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~-~---~~~~~~~~a~~aL 271 (986)
.+++ ......|...++.. .+.+...|+..+..+....|..-..+.+.|.++.++..+. . .+.++....-.++
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3455 33345556666554 4678899999999999666767778899999999999997 3 4566777777888
Q ss_pred HHHhccChhhHHHHHhCCCHHHHHHHHhcCCh
Q psy15604 272 QILAYGNQESKLIILASQGPVELVRIMRSYDY 303 (986)
Q Consensus 272 ~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~ 303 (986)
..|+. +....+.+.+.+.++.+++++.++++
T Consensus 180 ~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~ 210 (379)
T PF06025_consen 180 SAICL-NNRGLEKVKSSNPLDKLFEIFTSPDY 210 (379)
T ss_pred hHHhc-CHHHHHHHHhcChHHHHHHHhCCHHH
Confidence 88888 67788889999999999999987654
No 159
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.49 E-value=0.12 Score=49.06 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=94.8
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccch-
Q psy15604 123 IPELIKLLN--DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGL- 198 (986)
Q Consensus 123 i~~L~~ll~--~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~- 198 (986)
+..++..|. ...+++|..+..++..+- +..++...+. +..++..+-...+.+....+..++..+-.. |+-.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~---~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK---ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH---HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 444555454 356778888888888773 4444444332 344444332222334566677778887666 4544
Q ss_pred HHHHhcCChHHHHHhhC--CCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHH-HHHHHHHHHHH
Q psy15604 199 LAIFKSGGIPALVKLLS--SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVK-FLAIVTDCLQI 273 (986)
Q Consensus 199 ~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~-~~~~a~~aL~~ 273 (986)
..+...|..+.+..+.. ..+..++..++.+|..-| .++.+|..|. ..+++.|-..++. +++. ++..|+-.|+.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44556788999999998 778889999999999888 6777777776 5668999999964 5555 67766666653
No 160
>KOG1832|consensus
Probab=93.44 E-value=1.7 Score=50.56 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=106.0
Q ss_pred chHHHHhcCChHHHHHhhCCC--------CHhHHHHHHHHHHHHhcCCCCchHHHHHc--------CcHHHHHHHhcc--
Q psy15604 197 GLLAIFKSGGIPALVKLLSSP--------VESVLFYAITTLHNLLLHQEGSKMAVRLA--------GGLQKMVLLLGR-- 258 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~--------g~i~~L~~ll~~-- 258 (986)
..+.+.+.+++..++++.+.+ ..++..+|+..|+-+. .-++.+.++..+ .||..++..-..
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 445677788888888887533 4567888988888777 556777766542 244444443322
Q ss_pred --CCHHHHHHHHHHHHHHhccChhhHHHHHhC-C---CHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhcc
Q psy15604 259 --NNVKFLAIVTDCLQILAYGNQESKLIILAS-Q---GPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGG 332 (986)
Q Consensus 259 --~~~~~~~~a~~aL~~La~~~~~~~~~~~~~-g---~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~ 332 (986)
-++.++..|..++.++.+..|+++...+.. | +-+.. .+...+.....++..+-. ...+....|
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~m---------w~~Vr~ndG 740 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQM---------WEAVRGNDG 740 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHH---------HHHHhcCcc
Confidence 368899999999999999777776533211 1 10100 011111111122222211 234556789
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCc
Q psy15604 333 MQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGAT 402 (986)
Q Consensus 333 l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l 402 (986)
|..|+.++.-..|. .+...++..|+++|.-|++++..|+++.+.-.+
T Consensus 741 IkiLl~Ll~~k~P~-----------------------t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPP-----------------------TTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred HHHHHHHHhccCCC-----------------------CcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence 99999988654432 344567888999999999999999988765443
No 161
>KOG1991|consensus
Probab=93.41 E-value=23 Score=42.71 Aligned_cols=232 Identities=12% Similarity=0.058 Sum_probs=127.3
Q ss_pred cCcHHHHHHhhc------CC-CCHHHHHHHHHHHHHhhC---CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHH
Q psy15604 534 PQMVAALVHAIS------NS-NDLETTKGAVGTLHNLSH---HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHN 603 (986)
Q Consensus 534 ~~~i~~L~~lL~------~~-~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 603 (986)
+++++.+++.|. .. .++.-+.-|..++++++. .+..-+...+.-.++.+...++++.--++..|||+++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 367778888885 22 235556677788888875 22222344445556666777888888999999999999
Q ss_pred hhcCCCCChHHHHHhCcHHHHHHhhc-CCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCC---hHHHHHHHhcCChhHHH
Q psy15604 604 LLLHQEGSKMAVRLAGGLQKMVLLLG-RNNVKFLAIVTDCLQILAYGNQESKLIILASQG---PVELVRIMRSYDYEKLL 679 (986)
Q Consensus 604 l~~~~~~~~~~v~~~g~v~~Lv~ll~-~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~---~~~L~~ll~~~~~~~~~ 679 (986)
.+.-. .++...-..++......|. ++.-.|+-.++-||.-+....+.....+ ++.. .+.|+.+.+..+.+.+.
T Consensus 489 ~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~-~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 489 FSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV-SAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH-hhhhhHHHHHHHHHHHhcchhHHH
Confidence 98322 2222222455666667776 6677888899999999988654443333 2233 44555555555544443
Q ss_pred HHHHHHHHHhhcC-CCCchhHHhcCcHHHHHHhhCC------CCHHHHHHHHHHHHHhhc---cccccc-----chhchH
Q psy15604 680 WCTSRVLKVLSVC-SSNKPAIVEAGGMQALAMHLGH------PSQRLVQNCLWTLRNLSD---AGTKVD-----GLESLL 744 (986)
Q Consensus 680 ~~~~~~L~~Ls~~-~~~~~~l~~~g~~~~L~~ll~~------~~~~v~~~al~~L~nLs~---~~~~~~-----~~~~~l 744 (986)
..--......+.. .+....+. ........+++.. .+..=...|.++|+.++. .-.+.+ ....++
T Consensus 566 ~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2221222222221 00001111 1123333344432 123445566777776661 111111 122455
Q ss_pred HHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 745 QSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 745 ~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
+.+-..+.+.-.+.-.+++..+.+.
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 5555566666667777777777654
No 162
>KOG1078|consensus
Probab=93.41 E-value=20 Score=42.01 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHhhcC-CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhH
Q psy15604 621 LQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 699 (986)
Q Consensus 621 v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l 699 (986)
+.-|-.+|+. +..+..+....++..+...+|+.|. .+...|+..+.+..+. ..+.+.|..|..... ...
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~---~i~~rILhlLG~EgP--~a~ 462 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFT---QIAVRILHLLGKEGP--KAP 462 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccch---HHHHHHHHHHhccCC--CCC
Confidence 3444455544 3556677777777777776666553 2455666666655433 344566666643311 111
Q ss_pred HhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhc
Q psy15604 700 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQV 770 (986)
Q Consensus 700 ~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~ 770 (986)
....-+..+...+.-.+..++..|..+|.++. .........+.-.+.+.+.+.|.++|..|...|.++.
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11123344444444567788999999999998 1122223455667778888999999999999998755
No 163
>KOG1943|consensus
Probab=93.15 E-value=26 Score=42.66 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=150.5
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCC-CHHHHHHHHHHHhcccccccc---
Q psy15604 289 QGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHP-SQRLVQNCLWTLRNLSDAGTK--- 364 (986)
Q Consensus 289 g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~~~~~~~~L~~ls~~~~~--- 364 (986)
++++.|+..+++.+. .++|.+++-+..+..... ..+. ..++...+.++.-. ++..-..+.-+|+.++..|-.
T Consensus 341 ~vie~Lls~l~d~dt-~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT-VVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcc-hhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 345566666666554 488988888877764332 2222 22344444433221 122223344445555444421
Q ss_pred -----------------cccccCCchHHHHHHHHHHHHHhhC--h-hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH
Q psy15604 365 -----------------VSLLFNEIENIQRVAAGLLCELAQD--K-EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424 (986)
Q Consensus 365 -----------------i~ll~~~~~~~~~~a~~~L~~l~~~--~-~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~ 424 (986)
...-.+....++..|+-+...+++. + +... +.+.=.-..|+..+.+.....|.++.+++
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 1111244566788888888877632 2 2222 33322333455556667777777666655
Q ss_pred -HHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHH-h
Q psy15604 425 -KIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKL-L 502 (986)
Q Consensus 425 -al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~l-l 502 (986)
....- -.-+|.+ .+.......-+ +.. .+.-.......+..+. ......+..++.. +
T Consensus 496 qE~VGR--------~~n~p~G----i~Lis~~dy~s----V~~---rsNcy~~l~~~ia~~~---~y~~~~f~~L~t~Kv 553 (1133)
T KOG1943|consen 496 QENVGR--------QGNFPHG----ISLISTIDYFS----VTN---RSNCYLDLCVSIAEFS---GYREPVFNHLLTKKV 553 (1133)
T ss_pred HHHhcc--------CCCCCCc----hhhhhhcchhh----hhh---hhhHHHHHhHHHHhhh---hHHHHHHHHHHhccc
Confidence 11100 0011111 01000000000 000 0000000000111111 0111223333332 5
Q ss_pred cCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh----hhhc---
Q psy15604 503 NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL----AIFK--- 575 (986)
Q Consensus 503 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~----~i~~--- 575 (986)
.+-|..+++.++++|.+++.... .... ...++.+++...+. +...+.-..-+.+.+...-.... .+.+
T Consensus 554 ~HWd~~irelaa~aL~~Ls~~~p---k~~a-~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i 628 (1133)
T KOG1943|consen 554 CHWDVKIRELAAYALHKLSLTEP---KYLA-DYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI 628 (1133)
T ss_pred ccccHHHHHHHHHHHHHHHHhhH---Hhhc-ccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Confidence 56799999999999999877653 1222 25677777765443 55655544444443332111111 0000
Q ss_pred cC---ChHHHHH-hcCCCC-HhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 576 SG---GIPALVK-LLSSPV-ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 576 ~~---~i~~Lv~-lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
.+ .++++.. .+..+. .-++...+..+.++..............+.-..+.+.+.+++ .++..+.+++..++.
T Consensus 629 ~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 629 AGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 11 2333322 222221 234555556666666444443333333444444555554555 778888899988886
No 164
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.13 E-value=5.5 Score=42.65 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=107.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhC-CchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ccchH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS-PQMVAALVHAISNSNDLETTKGAVGTLHNLSHH---RQGLL 199 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~---~~~~~ 199 (986)
...+..+.......|..++..+.++-...-..+.+... ..++..+.+.++.+.. +-+..|+.++.-++.. .+...
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 34455666667888999988888877554444444322 2246777777887544 5666777777766655 23444
Q ss_pred HHHhcCChHHHHHhhCCCC--HhHHHHHHHHHHHHhcCCCCchHHHH-HcCcHHHHH--HHhcc----------CCHHHH
Q psy15604 200 AIFKSGGIPALVKLLSSPV--ESVLFYAITTLHNLLLHQEGSKMAVR-LAGGLQKMV--LLLGR----------NNVKFL 264 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~~~i~-~~g~i~~L~--~ll~~----------~~~~~~ 264 (986)
.+++ ...|.|.+.+.++. +.++..++.+|+-++......-..+. -...+..+. ...+. +++.+.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 5554 47788888887664 34555666666655432111111110 001222111 11221 124566
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhh
Q psy15604 265 AIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 318 (986)
Q Consensus 265 ~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls 318 (986)
..|..+-+-|...-+...-.-.-...++.|..+|.+.+.+ ++.+|..+|..|.
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~-VRiAAGEaiAll~ 256 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVD-VRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHH
Confidence 6665555555442332211112234579999999988766 8888888876664
No 165
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.05 E-value=0.38 Score=45.70 Aligned_cols=74 Identities=22% Similarity=0.142 Sum_probs=60.3
Q ss_pred HHHhCCCHHHHHHHHc--cCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHH-HHHHHHHHHHhh
Q psy15604 116 ADLATRAIPELIKLLN--DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE-TTKGAVGTLHNL 191 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l 191 (986)
.+...|.++.++.+.. +++..++..++.+|..-|.++..|..|.+.+ ++.|-+.++.++|.. ++..|+..|+.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~--~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY--VSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC--HHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH--HHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 3356788899999999 7889999999999999999999999999875 599889887666776 888888888754
No 166
>KOG2062|consensus
Probab=92.99 E-value=8 Score=44.71 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=109.7
Q ss_pred ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHh-hcCCCHhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 578 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL-LGRNNVKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 578 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l-l~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
+=+.+-+++.+.++-+|...+.++.- ++.... ..+++..|+.. ..+.|..|++.|.-+|.-.++..|
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLAL-AYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHH-HHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----
Confidence 33444556677777777666665432 222111 24556677766 455699999999999998888654
Q ss_pred HHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-
Q psy15604 657 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT- 735 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~- 735 (986)
...+..+.+|..+.+..++..+..+|..-+.+..++.++ ..|-.+..++..-||..|+.++.-|.-.++
T Consensus 588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred ----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 345677788877666888899999999988887766554 334444556667788999999888874443
Q ss_pred -cccchhchHHHHHHHhccCChhhH
Q psy15604 736 -KVDGLESLLQSLVQLLASQDINVI 759 (986)
Q Consensus 736 -~~~~~~~~l~~L~~ll~~~~~~i~ 759 (986)
-.+...++.+.+.+.+.+.+++.-
T Consensus 658 ~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred ccCchHHHHHHHHHHHhhhhhhHHH
Confidence 245566888889999887765543
No 167
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.96 E-value=5.7 Score=38.73 Aligned_cols=92 Identities=20% Similarity=0.155 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHH
Q psy15604 177 DLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL 255 (986)
Q Consensus 177 ~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 255 (986)
|+.+|..++.+++.|+.. |...+ ..+|.+...|+++++.++..|+.+|.+|...+. .+. +...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~---k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKV---KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eee---hhhhhHHHHHH
Confidence 467899999999999887 43333 357889999999999999999999999995542 211 12224788888
Q ss_pred hccCCHHHHHHHHHHHHHHhcc
Q psy15604 256 LGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 256 l~~~~~~~~~~a~~aL~~La~~ 277 (986)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998763
No 168
>KOG1991|consensus
Probab=92.90 E-value=27 Score=42.14 Aligned_cols=140 Identities=13% Similarity=0.086 Sum_probs=87.9
Q ss_pred chHHHHHHHHhc-------CCCHHHHHHHHHHHHhhccC---ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHH
Q psy15604 163 QMVAALVHAISN-------SNDLETTKGAVGTLHNLSHH---RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232 (986)
Q Consensus 163 ~~i~~Lv~lL~~-------~~~~~~~~~a~~~L~~ls~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 232 (986)
++++-+++.|.. ..++..+..|+.++++|+.- +.--+...+.=.++.+...++++..-++..||..+...
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 356777777761 23567888899999888743 11112233333566777778888888999999999999
Q ss_pred hcCCCCchHHHHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhccChhhHHHHHh--CCCHHHHHHHHhcCChH
Q psy15604 233 LLHQEGSKMAVRLAGGLQKMVLLLG-RNNVKFLAIVTDCLQILAYGNQESKLIILA--SQGPVELVRIMRSYDYE 304 (986)
Q Consensus 233 ~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~aL~~La~~~~~~~~~~~~--~g~v~~L~~ll~~~~~~ 304 (986)
+..+ .+..-.-..+.+...+.|. +.+-.++..|+.||..+-.+.+.....+.. .+.++.|+++.+..+.+
T Consensus 490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 9432 2222222355667777776 566778899999999997755544333321 12334555555554444
No 169
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.79 E-value=0.18 Score=32.65 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=25.2
Q ss_pred hHHHHHhcCCCCHhHHHHHHHHHHHhhc
Q psy15604 579 IPALVKLLSSPVESVLFYAITTLHNLLL 606 (986)
Q Consensus 579 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 606 (986)
+|.+++++++++++||..|+.+|++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999984
No 170
>KOG2274|consensus
Probab=92.78 E-value=27 Score=41.74 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=109.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhh-cCCCCHHHHHHHHHHHHHhhCCccch
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI-SNSNDLETTKGAVGTLHNLSHHRQGL 570 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL-~~~~~~~~~~~a~~~L~~ls~~~~~~ 570 (986)
.+.++.|.++....+.++....+.+|...++.+.......++ .+.|.++.++ +.+++|.+...+-.++..++....+.
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s-kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~ 607 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES-KICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY 607 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc-chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence 344667777777778888888888888888777655555554 6777777766 56678877777766666665522222
Q ss_pred hhhhccCChHHHHHhcCCCC----HhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhh-cCCCHhHHHHHHHHHH
Q psy15604 571 LAIFKSGGIPALVKLLSSPV----ESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLL-GRNNVKFLAIVTDCLQ 644 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~----~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll-~~~~~~v~~~a~~aL~ 644 (986)
.. .....+|.+++.|..+. .....-++..|.-+.+..++ ..+.+. .-+.|++.++. .+++......+..||+
T Consensus 608 g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 608 GP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred cc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 11 23457899999998876 56777788888877776554 444443 66788888875 4567889999999999
Q ss_pred HHhcC
Q psy15604 645 ILAYG 649 (986)
Q Consensus 645 ~L~~~ 649 (986)
.+...
T Consensus 686 a~Is~ 690 (1005)
T KOG2274|consen 686 ALISV 690 (1005)
T ss_pred HHHhc
Confidence 98874
No 171
>KOG2062|consensus
Probab=92.61 E-value=15 Score=42.57 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=85.1
Q ss_pred cCCHHHHHHH-hcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccch
Q psy15604 492 TRAIPELIKL-LNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 570 (986)
Q Consensus 492 ~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~ 570 (986)
.++|..|+.. .++.+.+++..|+.+|+-....+ +...+..+++|..+.++.++..++.+|.--|...-.+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 4567777775 66778999999999998776555 3567788888988889999999999988877754433
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcC-CCCChHHHHHhCcHHHHHHhhcCCCHhH
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH-QEGSKMAVRLAGGLQKMVLLLGRNNVKF 635 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~v~~~g~v~~Lv~ll~~~~~~v 635 (986)
. ++..|-.|.+++..-||+.|+-++.-+... .+..-..+ .+..+.+.+++...++..
T Consensus 624 e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 624 E------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred H------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 3 334455555666677888888877666543 23222222 234455666666554433
No 172
>KOG4151|consensus
Probab=92.56 E-value=0.71 Score=53.53 Aligned_cols=190 Identities=16% Similarity=0.077 Sum_probs=128.1
Q ss_pred cchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH-hcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15604 112 DQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ-LSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHN 190 (986)
Q Consensus 112 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~-la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ 190 (986)
..+...+..|+...|+++...+.+..+.....+|.. +.. +..+. ...++++.+.+.+.....-.-.++.+|.|
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS-----YEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 345566889999999999999888888888888872 211 11110 11245555555542333344557788999
Q ss_pred hccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHH-cCcHHHHHHHhccCCHHHHHHHH
Q psy15604 191 LSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL-AGGLQKMVLLLGRNNVKFLAIVT 268 (986)
Q Consensus 191 ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~a~ 268 (986)
|+.. ...+..+.+.-+++.+-.++...++..+..++..+.||..+..-+...+.+ ....+....++....++...+++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 9887 567777888888887777788888999999999999999765555556665 33566666666666667777777
Q ss_pred HHHHHHhccChhhHH-HHHhCCCHHHHHHHHhcCChHHHH
Q psy15604 269 DCLQILAYGNQESKL-IILASQGPVELVRIMRSYDYEKLL 307 (986)
Q Consensus 269 ~aL~~La~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~~~~ 307 (986)
.++..+..-+...+. ...-..+...++.++.+.+++..+
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qh 688 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQH 688 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhh
Confidence 777755543443444 444456677788888887766333
No 173
>KOG3036|consensus
Probab=92.51 E-value=2.2 Score=42.36 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhh----cCCCCHHHHHHHHHHHHHhhCCc--cchhhhhccCChHHH
Q psy15604 509 VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI----SNSNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIPAL 582 (986)
Q Consensus 509 ~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL----~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~i~~L 582 (986)
-...+...|..++++++.+..++.. .+--.+..+| ++...+.++..+.++++.+...+ +....+...+.+|..
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 3456777777888999888888874 3322333344 23345788999999999998833 445667789999999
Q ss_pred HHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHH-------hCcHHHHH-HhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 583 VKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL-------AGGLQKMV-LLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 583 v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~-------~g~v~~Lv-~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
++.+..+++..+..|...+..+..++.+..-.... .-.+..++ ++.+.+++.+...+.++..+|+.+ |..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar 252 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRAR 252 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHH
Confidence 99999999999999999999999887653211110 11233333 344557899999999999999864 5544
Q ss_pred HHH
Q psy15604 655 LII 657 (986)
Q Consensus 655 ~~~ 657 (986)
..+
T Consensus 253 ~aL 255 (293)
T KOG3036|consen 253 AAL 255 (293)
T ss_pred HHH
Confidence 444
No 174
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.38 E-value=1.6 Score=44.57 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=81.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHH
Q psy15604 591 ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRI 669 (986)
Q Consensus 591 ~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~l 669 (986)
+.....|+..|.-++.-.+++|..+.+...+..+++++.. ..+.++..+..+|..+..++|.+...+-+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3456778899999999999999999999999999999954 578999999999999999999999999999999999999
Q ss_pred HhcCC-hhHHHHH-HHHHHHHhhcC
Q psy15604 670 MRSYD-YEKLLWC-TSRVLKVLSVC 692 (986)
Q Consensus 670 l~~~~-~~~~~~~-~~~~L~~Ls~~ 692 (986)
+++.. +.+++.. .-..+-||...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 98763 2334333 33333455443
No 175
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.16 E-value=8.4 Score=41.29 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=109.4
Q ss_pred HHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHH--hCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc---Ccc
Q psy15604 80 PELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADL--ATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK---EAS 154 (986)
Q Consensus 80 ~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~---~~~ 154 (986)
...+..+.......|..+...+..+. ........+. ..-.+..+.+.++.+...-+..|++++.-++-. ...
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l---~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRAL---SSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 34444445455566665555443333 2322222221 122456677888888877777787887777643 244
Q ss_pred hhHhhhCCchHHHHHHHHhcCC-CHHHHHHHHHHHHhhccC----ccchHHHHhcCChHHHHH--hhC----------CC
Q psy15604 155 RHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHH----RQGLLAIFKSGGIPALVK--LLS----------SP 217 (986)
Q Consensus 155 ~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~~ls~~----~~~~~~i~~~g~i~~Lv~--lL~----------~~ 217 (986)
.+.+.+. +.+.|...+.++. .+..|..++.+|+-++.- ++......+ .+..+.. ..+ .+
T Consensus 123 ~~ei~~~--~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 123 SEEIFEE--LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HHHHHHH--HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCC
Confidence 5556554 4688888887643 456766766666655442 222221111 2221111 111 12
Q ss_pred CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q psy15604 218 VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275 (986)
Q Consensus 218 ~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La 275 (986)
++.+...|+.+.+-|...-+.....-.-...++.|..+|.+++..++..|..+|+-|.
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3568888888887777554442222222457999999999999999999999988774
No 176
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.89 E-value=9.2 Score=46.15 Aligned_cols=193 Identities=10% Similarity=0.141 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCC----hhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcH
Q psy15604 4 VAALVHAISNSND----LETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAI 79 (986)
Q Consensus 4 ~~~lv~~l~~~~d----~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i 79 (986)
+..++..+.+..| .+.-...+..|...++.+.||+.+.+.|+++.|++.++.-+.......... ..
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~----------i~ 188 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAE----------IA 188 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccch----------HH
Confidence 4455565654333 345456777777777889999999999999999999987554432111111 22
Q ss_pred HHHHHHhcC----CChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccC----CHHHHHHHHHHHHHhccc
Q psy15604 80 PELIKLLND----EDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE----DQVVVSQAAMMVHQLSKK 151 (986)
Q Consensus 80 ~~l~~ll~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~la~~ 151 (986)
+.|+.++.. ...+....... .+...... -.....+..|++.+.+. ++.+....+++|-.|+..
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~-------~~~~~~~~--~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G 259 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKS-------SSSLSGSE--EQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG 259 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccc-------cccccccc--cccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC
Confidence 222222211 00000000000 00000000 00111245555555543 477888889999999976
Q ss_pred C-cchhHhhhCCchHHHHHHHHhc--CCCHHHHHHHHHHHHhhccC-c------cchHHHHhcCChHHHHHhhCCCCH
Q psy15604 152 E-ASRHAIMNSPQMVAALVHAISN--SNDLETTKGAVGTLHNLSHH-R------QGLLAIFKSGGIPALVKLLSSPVE 219 (986)
Q Consensus 152 ~-~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~~a~~~L~~ls~~-~------~~~~~i~~~g~i~~Lv~lL~~~~~ 219 (986)
. +.-+.+++. +.+.+++=.. ...++- +.-+..++.++.. + .-++.+++.|++...+..|...-|
T Consensus 260 ~~e~m~~Lv~~---F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 260 NEEKMDALVEH---FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred CHHHHHHHHHH---HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 5 333444432 3444442111 111111 2224445555443 1 356788888999888888855433
No 177
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.83 E-value=0.4 Score=47.42 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcccCcchhHhhhCCch------HHHHHHHHhcCCCHHHHHHHHHHHHhhccCcc--chHHHHhcCCh
Q psy15604 136 VVVSQAAMMVHQLSKKEASRHAIMNSPQM------VAALVHAISNSNDLETTKGAVGTLHNLSHHRQ--GLLAIFKSGGI 207 (986)
Q Consensus 136 ~~~~~a~~~L~~la~~~~~~~~i~~~~~~------i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~g~i 207 (986)
..++.++.+|++|+-.+.|.+.|...+.+ +..|+++|...+++..|+.|...|.+|+..++ .+..-.+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 47999999999999999998888777643 45666677777899999999999999999854 33444566999
Q ss_pred HHHHHhhCCCCH
Q psy15604 208 PALVKLLSSPVE 219 (986)
Q Consensus 208 ~~Lv~lL~~~~~ 219 (986)
..|+.++.+.+.
T Consensus 219 ~~Li~FiE~a~~ 230 (257)
T PF12031_consen 219 SHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 178
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.78 E-value=5.5 Score=42.65 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=112.0
Q ss_pred CCHHHHH-HHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc--cc
Q psy15604 121 RAIPELI-KLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR--QG 197 (986)
Q Consensus 121 g~i~~L~-~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~--~~ 197 (986)
+.+..|+ ..+++.+..+|..+.++|+-.+-.+. .++.. .++.+...+.. ++..++..|+.++..+...- +.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~--~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKE--HLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHH--HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 77889999999999999999886543 33333 35788888866 58999999999999886642 21
Q ss_pred hHH-------HHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHh-cc---CCHHHHHH
Q psy15604 198 LLA-------IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL-GR---NNVKFLAI 266 (986)
Q Consensus 198 ~~~-------i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll-~~---~~~~~~~~ 266 (986)
-.. ......+..+...+.+.+++++..++..++.|...+.-.. ....+..|+-+. .. ++...+..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 1223566778888888899999999999999885543221 022333433333 22 44667776
Q ss_pred HHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcC
Q psy15604 267 VTDCLQILAYGNQESKLIILASQGPVELVRIMRSY 301 (986)
Q Consensus 267 a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~ 301 (986)
-...+-..+..+++++..+ ....++.+-.+.+.+
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l-~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERL-AEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHhCc
Confidence 6777777777777666543 445556665555544
No 179
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.35 E-value=6.2 Score=42.56 Aligned_cols=207 Identities=15% Similarity=0.130 Sum_probs=144.7
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccC-cc-----hhHhhhC-CchHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15604 116 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE-AS-----RHAIMNS-PQMVAALVHAISNSNDLETTKGAVGTL 188 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~-~~-----~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~~a~~~L 188 (986)
.+...+.+..|+..|..-+-+.+..++.+..++-... .. .+-+... ..++..| +..-+++++.-.+-..|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L---~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDIL---LRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHH---HHGGGSTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHH---HHHhcCccccchHHHHH
Confidence 4556788899999999999999999999999987543 22 2234444 3333333 33334667777888888
Q ss_pred HhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcC---cHHHHHHHhccCCHHHHH
Q psy15604 189 HNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG---GLQKMVLLLGRNNVKFLA 265 (986)
Q Consensus 189 ~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g---~i~~L~~ll~~~~~~~~~ 265 (986)
.....++.....+.....+..+....+.++=++...|..++..+...+........... .+...-.+|.+++--.+.
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 88888888888888888899999999999999999999999998766554444444433 466777888899988999
Q ss_pred HHHHHHHHHhccChhhHHHH----HhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHH
Q psy15604 266 IVTDCLQILAYGNQESKLII----LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 327 (986)
Q Consensus 266 ~a~~aL~~La~~~~~~~~~~----~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 327 (986)
.+...|+.|-. ++.+...+ .+..-+..++.+|++.+.. ++..|..++.....++...+.+
T Consensus 228 qslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~-Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 228 QSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRDKSKN-IQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HH-HHHHHHHHHHHHHH-SS-BHHH
T ss_pred hhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcCcchh-hhHHHHHHHHHHHhCCCCChHH
Confidence 99999999976 33343332 2234456677788877655 8888888888877777665444
No 180
>KOG1832|consensus
Probab=91.33 E-value=2.3 Score=49.62 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhChHHHHHhhCCC---C-CchHHHHHHHHHHhhhhccccchhhhhcCc
Q psy15604 894 EMAQNAVRLNYGIQTIVNLLNPP---S-RWPLVKAVIGLIRNLALCQANHAPLREYGA 947 (986)
Q Consensus 894 ~~~~~~v~~~~~l~~l~~ll~~~---~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~ 947 (986)
+....+||+.+|+.+|++||+-. + .+.+...||.+|--||+++.-+..|.+.-+
T Consensus 729 ~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 729 RQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence 44578899999999999999743 1 344777889999999999999998887543
No 181
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.77 E-value=0.52 Score=30.45 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhc
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKK 523 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 523 (986)
+|.++++++++++++|..|+.+|..+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999988753
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.72 E-value=5.9 Score=42.72 Aligned_cols=204 Identities=16% Similarity=0.141 Sum_probs=141.4
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc------chhhhcc-cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS------RHAIMNS-PQMVAALVHAISNSNDLETTKGAVGTLHNLS 564 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------~~~l~~~-~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls 564 (986)
.+.+..|+..|..-+-+.+..++.++.++.+.... ..-+... +.++..|+..- +++++-..+...|....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy---~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY---ENPDIALNCGDMLRECI 151 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG---GSTTTHHHHHHHHHHHT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh---cCccccchHHHHHHHHH
Confidence 56688888888888999999999999998766432 2234444 45555555543 35677777888888888
Q ss_pred CCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhC---cHHHHHHhhcCCCHhHHHHHHH
Q psy15604 565 HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG---GLQKMVLLLGRNNVKFLAIVTD 641 (986)
Q Consensus 565 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g---~v~~Lv~ll~~~~~~v~~~a~~ 641 (986)
..+.....+.....+..+....+.++=++...|..++..+..............+ .+.....++.++|--+++.+..
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 8877788888899999999999999999999999999998766554333332222 3456778899999999999999
Q ss_pred HHHHHhcCCcccHHHH----HhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHH
Q psy15604 642 CLQILAYGNQESKLII----LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIV 700 (986)
Q Consensus 642 aL~~L~~~~~~~~~~~----~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~ 700 (986)
.|+.|..+. .+...+ -++.-+..++.+|++.+ ..++..|..++.....+|...+.+.
T Consensus 232 LL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 232 LLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred HHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCCChHHH
Confidence 999998763 333322 23334666777777776 6677788888887777765444443
No 183
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.44 E-value=26 Score=38.55 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhcCCChhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHh
Q psy15604 2 EMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSK 55 (986)
Q Consensus 2 ~~~~~lv~~l~~~~d~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~ 55 (986)
|-|..++.-++++.....|+.++.-|+.-+.+++.|..+...|.++.+++.+..
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~ 74 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSD 74 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhcc
Confidence 456778888887776788888888888888999999999998988888888754
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.21 E-value=4.9 Score=43.06 Aligned_cols=163 Identities=16% Similarity=0.118 Sum_probs=110.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--Cccchhh-----
Q psy15604 500 KLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGLLA----- 572 (986)
Q Consensus 500 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~~~----- 572 (986)
..++++++.+|..|+.+|+-.+--+.. +. ...++.+...++.+ ++.++..|+.++..+.. ..+....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~---~a--~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKE---LA--KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 467889999999999999988766541 11 14567778877554 89999999999999875 2121111
Q ss_pred --hhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC----CCHhHHHHHHHHHHHH
Q psy15604 573 --IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR----NNVKFLAIVTDCLQIL 646 (986)
Q Consensus 573 --i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~----~~~~v~~~a~~aL~~L 646 (986)
......+..+...+.+.+++++..++..+..|.....-.. ....+..|+-+.-+ +++.++......+-..
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 1224456677888888899999999999999986654322 12334444433322 3577888888888888
Q ss_pred hcCCcccHHHHHhCCChHHHHHHHhcC
Q psy15604 647 AYGNQESKLIILASQGPVELVRIMRSY 673 (986)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~L~~ll~~~ 673 (986)
++.+++++..+.+ ..++.+..+...+
T Consensus 184 ~~s~~~~Q~~l~~-~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 184 ASSSPENQERLAE-AFLPTLRTLSNAP 209 (298)
T ss_pred HcCCHHHHHHHHH-HHHHHHHHHHhCc
Confidence 8876666544443 5566666666544
No 185
>KOG0414|consensus
Probab=90.16 E-value=3.1 Score=50.55 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=108.9
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccch
Q psy15604 124 PELIKLLN----DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGL 198 (986)
Q Consensus 124 ~~L~~ll~----~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~ 198 (986)
|.++...+ .++++++..|-.+|+++...+. .+-+.. ++.|...+..++++.+|-.+..+++.++.. |..-
T Consensus 922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fces~--l~llftimeksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCESH--LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhcCCCceeeecchheccchhhhccccc
Confidence 44556663 4578999999999999775431 233332 599999999889999999999999999887 5444
Q ss_pred HHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 199 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 199 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
+.+ -+.|.+.|.+.+++++..|...|.+|... ..|.-.|.++.+..++.++++.+...|-.....|+.
T Consensus 997 e~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 997 EPW-----TEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred chh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 433 45788899999999999999999999943 235557999999999999999998888888888865
No 186
>KOG2999|consensus
Probab=89.90 E-value=9.5 Score=42.55 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=109.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCC---HHHHHHHHHHHHhhccCccchH
Q psy15604 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND---LETTKGAVGTLHNLSHHRQGLL 199 (986)
Q Consensus 123 i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~---~~~~~~a~~~L~~ls~~~~~~~ 199 (986)
...++..+.+++...+..+.+-|..++.+....+.+....| +..|..++.++.. .++...++.+++.+-.+.-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 35688899999998888899999999999999889998887 4999999887543 4555666666665533321111
Q ss_pred HHHhcCChHHHHHhhC--CCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 200 AIFKSGGIPALVKLLS--SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
..+...+|.....+.+ .-+..+...|+..|-++..++...+..+.+.--+..|+..+...+..++..+...+..+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1122223333333332 2355678899999999998887788888888899999999988888887776666666543
No 187
>KOG1248|consensus
Probab=89.76 E-value=12 Score=46.06 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=121.8
Q ss_pred HHHHHhcCCChhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcHHHHHHHh
Q psy15604 7 LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLL 86 (986)
Q Consensus 7 lv~~l~~~~d~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~~l~~ll 86 (986)
++..+.++.++.+|+++-..|..++..+.+.... ...+..+ ...+.+-.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~------~q~i~~I-------------------------~n~L~ds~ 706 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLV------EQRIDDI-------------------------FNSLLDSF 706 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHH------HHHHHHH-------------------------HHHHHHHH
Confidence 3455556666778888888888887654332221 1111111 22222333
Q ss_pred cCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcc-----cCcchhHhhhC
Q psy15604 87 NDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK-----KEASRHAIMNS 161 (986)
Q Consensus 87 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~-----~~~~~~~i~~~ 161 (986)
++...-.+.....+|..|..+++. .....-...|++++-.++..+...++.+..+|..+.. ++.+ +. .
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~---e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~-e~-~-- 779 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSA---EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGN-EP-A-- 779 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccc-cc-h--
Confidence 333333444445555556554331 1111122345665555588888888888888887772 1111 11 0
Q ss_pred CchHHHHHHHHhcC--CCHHHHHHH-HHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCC
Q psy15604 162 PQMVAALVHAISNS--NDLETTKGA-VGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQE 237 (986)
Q Consensus 162 ~~~i~~Lv~lL~~~--~~~~~~~~a-~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 237 (986)
...+..++..+..+ .+......+ +-++..+... ...-..-.-.+.+..+.-.|.+..+++...|+..+.-++...+
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC
Confidence 11345555555433 222222112 3333333222 1111111112355566677788999999999999999997776
Q ss_pred CchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q psy15604 238 GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275 (986)
Q Consensus 238 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La 275 (986)
.....-.....++.++.++++..-.++...-..|..|.
T Consensus 860 e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 860 EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55444333446777777776656666666555555554
No 188
>KOG2274|consensus
Probab=89.71 E-value=22 Score=42.43 Aligned_cols=182 Identities=17% Similarity=0.102 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHH
Q psy15604 504 DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALV 583 (986)
Q Consensus 504 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv 583 (986)
+..+.++..|+.++...++.. ...... +++++.|.++.... +.++.-....+|+..+.-+.-.....++...|..+
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~-vl~~~~--p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i 577 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVK-VLLSLQ--PMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTI 577 (1005)
T ss_pred CCCCchhHHHHHHHHhccCce-eccccc--hHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHH
Confidence 345566677777776665221 222222 47788888877554 56777777788888887444444445667778777
Q ss_pred Hhc--CCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCC----HhHHHHHHHHHHHHhcCCcccHHHH
Q psy15604 584 KLL--SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN----VKFLAIVTDCLQILAYGNQESKLII 657 (986)
Q Consensus 584 ~lL--~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~----~~v~~~a~~aL~~L~~~~~~~~~~~ 657 (986)
.+. .+.+|.+...+--++-.++........+ ....+|.++..+..+. +.....+...|.-+.+..|+.-...
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~ 655 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQIAANYGPM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL 655 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence 765 4566666666655555555322211111 2356899999998765 6778888888888888654443333
Q ss_pred HhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q psy15604 658 LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 691 (986)
Q Consensus 658 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~ 691 (986)
+-+-..+++.++.-+.++......+..+|+.+-.
T Consensus 656 l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 656 LICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3335677888876666556666788888887743
No 189
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.59 E-value=14 Score=42.47 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHH
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 244 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 244 (986)
..++...+ .+...++.|++.+.....+ |+.++. ++..++.++.+.+..++..|++.|-.+|.++++....+
T Consensus 26 ~~il~~~k--g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 26 KEILDGVK--GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHGGG--S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 44444333 3788999999999999888 776665 45689999999999999999999999997766555444
Q ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhc--CChHHHHHHHHHHH
Q psy15604 245 LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRS--YDYEKLLWCTSRVL 314 (986)
Q Consensus 245 ~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~~~~~~a~~aL 314 (986)
+..|+++|.++++.....+-.+|..|-..++.. .+..+...+.. ..++.+++.++..|
T Consensus 98 ----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 98 ----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp ----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 578999999998888888888888886644421 23444444431 12345787666555
No 190
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=89.53 E-value=6.3 Score=40.09 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=71.4
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhccc-------CcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP-------QMVAALVHAISNSNDLETTKGAVGTLHNLS 564 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~-------~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls 564 (986)
.+.+|..++.|..++.-.+.-|+.++.++..++....-+..++ .++..++.-+....++.+.+...++...|+
T Consensus 138 tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 138 TEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp TTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred hchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 5668999999999998889999999999988776544444332 244455555555668999999999999999
Q ss_pred CCccchhhhhccCChHHH------HHhcCCCCHhHHHHHHHHHHHh
Q psy15604 565 HHRQGLLAIFKSGGIPAL------VKLLSSPVESVLFYAITTLHNL 604 (986)
Q Consensus 565 ~~~~~~~~i~~~~~i~~L------v~lL~~~~~~v~~~a~~aL~nl 604 (986)
.++..+..+.+ .+|.. ..++ .+|+.++..-...+.|+
T Consensus 218 dnprar~aL~~--~LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 218 DNPRAREALRQ--CLPDQLRDGTFSNIL-KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TSTTHHHHHHH--HS-GGGTSSTTTTGG-CS-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHH--hCcHHHhcHHHHHHH-hcCHHHHHHHHHHHHHh
Confidence 98887776653 22321 1122 23566666555555544
No 191
>KOG2611|consensus
Probab=88.98 E-value=37 Score=37.44 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=97.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCc----chhHhhhCCchHHHHHHHHhcC------CCHHHHHHHHHHHHhhccC
Q psy15604 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKEA----SRHAIMNSPQMVAALVHAISNS------NDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 125 ~L~~ll~~~~~~~~~~a~~~L~~la~~~~----~~~~i~~~~~~i~~Lv~lL~~~------~~~~~~~~a~~~L~~ls~~ 194 (986)
.+..+++..+++-+-.+.-...++..+.+ ++..+.+.-|+ +-+-++|.+. .|...+.-+...|.-+|+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf-~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGF-HFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhcc-chHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 36677777778888888888888887653 46667777665 7777777642 3445667788889999998
Q ss_pred cc--chHHHHhcCChHHHHHhhCCC-CHh------HHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc
Q psy15604 195 RQ--GLLAIFKSGGIPALVKLLSSP-VES------VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 258 (986)
Q Consensus 195 ~~--~~~~i~~~g~i~~Lv~lL~~~-~~~------~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 258 (986)
|+ ..+.+++ .||.|...++.. +++ +...+-.+|...+ +.+...+.+...|+++.+.++..-
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHhC
Confidence 76 4456655 799999999643 333 6788899999999 557788888889999999987754
No 192
>PRK09169 hypothetical protein; Validated
Probab=88.84 E-value=1e+02 Score=41.52 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhH
Q psy15604 344 SQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416 (986)
Q Consensus 344 ~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~ 416 (986)
++-...+++|+|++. ...+.++..+......+..+++.+..|-..|.-..|-.+.+.+....
T Consensus 455 n~QeLaN~LnALsKW-----------p~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~ 516 (2316)
T PRK09169 455 SAQELANALNALSKW-----------PDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDA 516 (2316)
T ss_pred CHHHHHHHHHHHhcC-----------CchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHH
Confidence 445556788888776 33334444444444566677777777777777777777766655443
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=3.8 Score=45.52 Aligned_cols=154 Identities=14% Similarity=0.041 Sum_probs=101.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhcc
Q psy15604 497 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKS 576 (986)
Q Consensus 497 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 576 (986)
.+-+++.+.|+..|...+..++---....+ .+++..+++.--++.+.++++.|+-+|.-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 344577888888888887776643222211 37788888875555688999999999988887532
Q ss_pred CChHHHHHhc-CCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc-CCcccH
Q psy15604 577 GGIPALVKLL-SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY-GNQESK 654 (986)
Q Consensus 577 ~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~-~~~~~~ 654 (986)
..++..+++| .+++..|+...+.+|+-.|..... .-++..|-.++.+++.-|++.|+-++..+.. .+++..
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 4566667766 567888999999999988855441 2234455566777888888888888886654 333322
Q ss_pred HHHHhCCChHHHHHHHhcCC
Q psy15604 655 LIILASQGPVELVRIMRSYD 674 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~ 674 (986)
..+. +....+.+++.+..
T Consensus 658 p~v~--~I~k~f~~vI~~Kh 675 (926)
T COG5116 658 PNVK--RIIKKFNRVIVDKH 675 (926)
T ss_pred hhHH--HHHHHHHHHHhhhh
Confidence 2221 23455555554443
No 194
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.86 E-value=3.2 Score=39.80 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=78.2
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHh-hhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC----cc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI-MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH----RQ 196 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i-~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~----~~ 196 (986)
.+..+..+|++.+..-|..++..+.-.+..... +.+ ...+..+..+++.|+..+++.+.+.|+.+|..+... |+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445678899999999999888888887766433 444 333446888999999878888999999988888554 44
Q ss_pred chHHHHhc---CChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCC
Q psy15604 197 GLLAIFKS---GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG 238 (986)
Q Consensus 197 ~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 238 (986)
..+++... +.++.++.+++. +.....++.+|..+...++.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 44444332 234444454443 56677888888887765553
No 195
>KOG2025|consensus
Probab=87.26 E-value=66 Score=37.55 Aligned_cols=116 Identities=18% Similarity=0.099 Sum_probs=81.3
Q ss_pred CChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 577 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 577 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
+.+..+++-..+++..|+..++..|.-+........+.+. .+....|..-+.+..|.|+..|..+|+.+-.+..+.
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 3445566666788899999999999988854444444443 666777777777788899999999999987432111
Q ss_pred HHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHh
Q psy15604 657 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVE 701 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~ 701 (986)
+..++..+..++++....+++.+ +|.+++..++..+.+++
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCIVE 200 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhHHH
Confidence 12356677778887655667654 67888887776666665
No 196
>KOG2611|consensus
Probab=87.26 E-value=25 Score=38.65 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=94.6
Q ss_pred hHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC---ChHHHHHhCcHHHHHHhhcCC-------CHhHHHHHHHHHHHHhc
Q psy15604 579 IPALVKLLSSPVESVLFYAITTLHNLLLHQEG---SKMAVRLAGGLQKMVLLLGRN-------NVKFLAIVTDCLQILAY 648 (986)
Q Consensus 579 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~v~~~g~v~~Lv~ll~~~-------~~~v~~~a~~aL~~L~~ 648 (986)
...+..+++..+++-+..|+.....++...+- .++.+.+.-|.+-+-+++.+. +.-.+..+...|..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 34466677777777788888888888866442 566777888888888888763 22345566677777777
Q ss_pred CCcc--cHHHHHhCCChHHHHHHHhcCChhH------HHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhC
Q psy15604 649 GNQE--SKLIILASQGPVELVRIMRSYDYEK------LLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG 713 (986)
Q Consensus 649 ~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~------~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~ 713 (986)
. |+ ....+++ .++.|..++....+++ ...++..+|..++..+...+.++..|+++.+.+.-.
T Consensus 93 ~-pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 93 V-PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred C-hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 5 33 2234443 5788888887654343 678888999999999888899999999999997543
No 197
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=86.77 E-value=8.2 Score=42.51 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCC-CCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
+..+++-|.++.+..+|+.++.-|+.-+.+++.+..+...|.+..++..+.. ++..+...++.++..+...+...-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4666666776667789999999999999999999999999999999999954 444355555555555553444344444
Q ss_pred HHcCcHHHHHHHhc
Q psy15604 244 RLAGGLQKMVLLLG 257 (986)
Q Consensus 244 ~~~g~i~~L~~ll~ 257 (986)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45566666678776
No 198
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.50 E-value=6.6 Score=45.00 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=78.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcc-cCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHh
Q psy15604 126 LIKLLNDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFK 203 (986)
Q Consensus 126 L~~ll~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~ 203 (986)
++...+ ++...+..|+..+..... .|+.++. ++..++++..+ +|..+|..|...|..+|.+ ++....+++
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~------Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kvaD 99 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE------AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKVAD 99 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH------HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHHHH
Confidence 333333 578899999999988774 4555543 36888888887 7999999999999999998 667676655
Q ss_pred cCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc---cCCHHHHHHHHHHH
Q psy15604 204 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG---RNNVKFLAIVTDCL 271 (986)
Q Consensus 204 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~a~~aL 271 (986)
.|+++|++.++.-...+-.+|..+...++ .+.+..++..+. +.++.++..+...|
T Consensus 100 -----vL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 100 -----VLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp -----HHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred -----HHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 89999999888777777777777774443 334455555554 34455555444333
No 199
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.85 E-value=2.1 Score=34.22 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCC
Q psy15604 510 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGG 578 (986)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 578 (986)
...|+++++++++.+....-+-+ .++++.++++..+++...+|-.|..+|.-++.+.++.+.+-+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 45689999999887766555554 489999999998888899999999999999999888877766653
No 200
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.42 E-value=6.7 Score=38.57 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=62.8
Q ss_pred cchhhhcccCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHhhCCccchhhhhc-cCChHHHHHhcCCCCHhHHHH
Q psy15604 526 SRHAIMNSPQMVAALVHAISN--------SNDLETTKGAVGTLHNLSHHRQGLLAIFK-SGGIPALVKLLSSPVESVLFY 596 (986)
Q Consensus 526 ~~~~l~~~~~~i~~L~~lL~~--------~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~v~~~ 596 (986)
+...+++. |++..|+.+|.. ..+.+.+..++.+|..+..+..+...+++ .+++..++..|.+++..++..
T Consensus 99 Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 99 WVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred HHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 45666664 778888887732 24568899999999999998888887776 888999999999999999999
Q ss_pred HHHHHHHhh
Q psy15604 597 AITTLHNLL 605 (986)
Q Consensus 597 a~~aL~nl~ 605 (986)
++..|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
No 201
>KOG2999|consensus
Probab=85.32 E-value=17 Score=40.71 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCC----HhHHHHHHHHHHHHhcCCCCch
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPV----ESVLFYAITTLHNLLLHQEGSK 240 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~L~~~~~~~~ 240 (986)
...+.+.+.++ +...+..|...|..++.++.....++...++..|..+..+++ .++....+.++..+-.+.--.+
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 35667777774 555555599999999999999999999999999999998764 3577777888877774432222
Q ss_pred HHHHHcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhh
Q psy15604 241 MAVRLAGGLQKMVLLLG--RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 318 (986)
Q Consensus 241 ~~i~~~g~i~~L~~ll~--~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls 318 (986)
..+. ..+|.....+.. ..+..+...|...|-++..+++..+..+.+.--++.|+..++..+.. +..++...+..+-
T Consensus 164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~-i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQR-IQTCAIALLNALF 241 (713)
T ss_pred eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchH-HHHHHHHHHHHHH
Confidence 2222 223334444432 23344556667777778777787888888999999999999987765 5555666666554
No 202
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=11 Score=42.17 Aligned_cols=155 Identities=8% Similarity=0.070 Sum_probs=104.2
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHh-hcCCCHhHHHHHHHHHHHHhcCCcccHHHHHh
Q psy15604 581 ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL-LGRNNVKFLAIVTDCLQILAYGNQESKLIILA 659 (986)
Q Consensus 581 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l-l~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 659 (986)
.+-+++.+.++-++...+.+++---.... ..|++..++.. ..+.++.|++.|.-+|.-.|.+.+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 34455666666666666555543221111 25667777776 556789999999999998888643
Q ss_pred CCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-c-c
Q psy15604 660 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-K-V 737 (986)
Q Consensus 660 ~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~-~-~ 737 (986)
..+...+++|....+..++....-+|..-+.+...+. +...|-.++.++..-++..|+.+++-|.-..+ + .
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 4566777778766557777777778887777654333 34556667778888899999999988873333 2 3
Q ss_pred cchhchHHHHHHHhccCChh
Q psy15604 738 DGLESLLQSLVQLLASQDIN 757 (986)
Q Consensus 738 ~~~~~~l~~L~~ll~~~~~~ 757 (986)
+...++++.+.+.+.+.+++
T Consensus 658 p~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 658 PNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hhHHHHHHHHHHHHhhhhHh
Confidence 44568888888888765443
No 203
>KOG1967|consensus
Probab=84.53 E-value=7.6 Score=46.11 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=98.7
Q ss_pred cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHH-HhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR-LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~-~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
...+|.+++.........+..-..+|.+...+-|. ....- -....|.|++.|.-++..++.....++.-+....+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 56788888888876777888888899999876553 11111 13346777888888888888888888887776554444
Q ss_pred HHHHhCCChHHHHHHHhcCCh--hHHHHHHHHHHHHhhc-CCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 655 LIILASQGPVELVRIMRSYDY--EKLLWCTSRVLKVLSV-CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~~--~~~~~~~~~~L~~Ls~-~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
...++ ..++.++.+=.++++ ..++..+..+|..|.. -|...-.-.+..+++.|...|+++.--+|..|..+
T Consensus 945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 44443 346666666555553 5677888888888876 34433333444566677777776666666666554
No 204
>KOG2025|consensus
Probab=84.37 E-value=28 Score=40.39 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=73.2
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
|.+..+++...+++..++..... .+..+.........-+-.+....+..-+.+..+.||.+|+.+|..+-.++..-+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlq---ila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQ---ILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHH---HHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 57777777778888888765443 344433333444555666677778888888889999999999999986543221
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHN 190 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ 190 (986)
.+ +.-.+..++++.+++++|+.|+..+..
T Consensus 162 ----~~-v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 162 ----CP-VVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ----cc-HHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 12 346677888887899999987654443
No 205
>KOG2956|consensus
Probab=84.36 E-value=36 Score=37.59 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhc--cCChHH
Q psy15604 506 DQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK--SGGIPA 581 (986)
Q Consensus 506 ~~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~~i~~ 581 (986)
..+-+..|..-|..+..... .+..... .++..+++.|.+..+...+..|++.|..++.+... .+++ .-++..
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K 375 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICK 375 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHH
Confidence 34555667776776655543 2333333 56777888888877888999999999999874322 2222 224445
Q ss_pred HHHhcCCCCHhHHHHHHHH-HHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhC
Q psy15604 582 LVKLLSSPVESVLFYAITT-LHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS 660 (986)
Q Consensus 582 Lv~lL~~~~~~v~~~a~~a-L~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 660 (986)
++..-.+.++++...|... +.-++.+.+. +. +..+..++...+......+..++..++.+-+.-....+-+
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~-~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPL-QC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCch-hH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 5555566666655555544 4445544442 22 2233444444555555566667777776421111111223
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHHh
Q psy15604 661 QGPVELVRIMRSYDYEKLLWCTSRVLKVL 689 (986)
Q Consensus 661 ~~~~~L~~ll~~~~~~~~~~~~~~~L~~L 689 (986)
+..|.+++...+.+ ..+++.+..+|..+
T Consensus 448 diaP~~iqay~S~S-S~VRKtaVfCLVam 475 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTS-STVRKTAVFCLVAM 475 (516)
T ss_pred hhhhHHHHHhcCch-HHhhhhHHHhHHHH
Confidence 56777777777666 55667777666665
No 206
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=84.28 E-value=3 Score=33.36 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCc
Q psy15604 636 LAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGG 704 (986)
Q Consensus 636 ~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~ 704 (986)
++.+.|++.+++.. +.+...+.+.+.++.++++..+.+.-.++-.+..+|.-++........+-+.|.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 56789999999875 455555556689999999999888788999999999999887766666655543
No 207
>KOG2137|consensus
Probab=83.03 E-value=32 Score=40.18 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=94.7
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc
Q psy15604 116 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR 195 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~ 195 (986)
.-+...++|.|..-+++.+..++..++..+..++..=+ ...++.. ++|.+-.+...+++..++..++.++..+.
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~-ilP~l~~l~~~tt~~~vkvn~L~c~~~l~--- 457 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQA-ILPRLKNLAFKTTNLYVKVNVLPCLAGLI--- 457 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHH-HHHHhhcchhcccchHHHHHHHHHHHHHH---
Confidence 33456677888888899999999999999998886533 2333332 46777776556678999999999999997
Q ss_pred cchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccC
Q psy15604 196 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN 259 (986)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~ 259 (986)
+..+...-..-+.++.+..+..++.+....+.+..++....+.. ..+....++|.++.+...+
T Consensus 458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 22222222234555666667788999988888888888655433 3444466777777766543
No 208
>KOG2956|consensus
Probab=82.30 E-value=35 Score=37.70 Aligned_cols=138 Identities=10% Similarity=0.051 Sum_probs=86.9
Q ss_pred cHHHHHHhhcC-CCHhHHHHHHHHHHHHhcCCcccHHHHHh--CCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc
Q psy15604 620 GLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILA--SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 696 (986)
Q Consensus 620 ~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~ 696 (986)
.+..+++.+.+ .++..+..|.+.|+.++...+. .+.+ .-++..+++.-.+..++....+.-.++..++.+....
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 34556677776 5777888899999999975322 1211 1234455555556665666666666677777664422
Q ss_pred hhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc---ccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 697 PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK---VDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 697 ~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~---~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
. +..+..++-..+...-..++..+..+...-.. ......+.|.+++--.+....+|+.|..||-
T Consensus 407 ~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 407 C-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred H-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 1 22233333345555555666666666633332 2234578899999999999999999999986
No 209
>KOG1820|consensus
Probab=82.11 E-value=42 Score=40.83 Aligned_cols=188 Identities=10% Similarity=0.051 Sum_probs=120.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 571 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 571 (986)
....+.+..-+.+.+..-+.+|+..+........ ........+.+..+......+.+..+...++.+|..++..-....
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 4445667777888899999999999988766665 222222235566666665555577888888889999987221112
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
.=+..+..|.++..+......+++.+..++-.++.... .....+.+...+++.+|.+...+...+........
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 22335677888888888888888887777776664222 23445677788899999988886666665555432
Q ss_pred ---ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhh
Q psy15604 652 ---ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 690 (986)
Q Consensus 652 ---~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls 690 (986)
..+..+ ...++.++....+.+ .+++.++..++..+-
T Consensus 404 ~~~~~~~t~--~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 404 PKTVEKETV--KTLVPHLIKHINDTD-KDVRKAALEAVAAVM 442 (815)
T ss_pred CcCcchhhH--HHHhHHHhhhccCCc-HHHHHHHHHHHHHHH
Confidence 111111 123455555555555 678888877766653
No 210
>KOG2032|consensus
Probab=82.10 E-value=36 Score=37.81 Aligned_cols=145 Identities=11% Similarity=-0.024 Sum_probs=84.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHhccc-CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHH-Hhc
Q psy15604 127 IKLLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAI-FKS 204 (986)
Q Consensus 127 ~~ll~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~ 204 (986)
..-.++++..++..|++.|.+++.. |+-....... .+..++.-|-+..+.++...+..+|..+...-.+.... +=.
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~--~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT--QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 3334566778999999999999977 4333322222 35666666666567888888888888775543333211 111
Q ss_pred CChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHH---cCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy15604 205 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL---AGGLQKMVLLLGRNNVKFLAIVTDCLQIL 274 (986)
Q Consensus 205 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~---~g~i~~L~~ll~~~~~~~~~~a~~aL~~L 274 (986)
.+.-.+..+..+.+++++..+...++.|+......++.... .+...+++-.+.+.++.+.. |+......
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~ 413 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT 413 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh
Confidence 23345567778889999998888777776443333332221 12233444445556665544 34444333
No 211
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=81.55 E-value=11 Score=37.08 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=61.9
Q ss_pred cchhHhhhCCchHHHHHHHHhc--------CCCHHHHHHHHHHHHhhccCccchHHHHh-cCChHHHHHhhCCCCHhHHH
Q psy15604 153 ASRHAIMNSPQMVAALVHAISN--------SNDLETTKGAVGTLHNLSHHRQGLLAIFK-SGGIPALVKLLSSPVESVLF 223 (986)
Q Consensus 153 ~~~~~i~~~~~~i~~Lv~lL~~--------~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~ 223 (986)
..-..+.+.|| +..|+.+|.. ..+......++.+|..+..+..+...+++ .+++..++..|.+++..++.
T Consensus 98 ~Wv~~Fl~~~G-~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 98 SWVQEFLELGG-LEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHH-HHHH-HHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred hHHHHhccCCC-HHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 44556666677 4888888743 24567888899999999888777777766 58999999999999999999
Q ss_pred HHHHHHHHHh
Q psy15604 224 YAITTLHNLL 233 (986)
Q Consensus 224 ~a~~~L~~L~ 233 (986)
.++..|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 212
>KOG2032|consensus
Probab=81.40 E-value=97 Score=34.67 Aligned_cols=149 Identities=12% Similarity=-0.016 Sum_probs=90.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh-
Q psy15604 497 ELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF- 574 (986)
Q Consensus 497 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~- 574 (986)
.+..-.++++...+..|+..|.+.+...+. ..... +..+..++.-|-+..+.+++.++..+|..+...-.+....-
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~ 339 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY 339 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence 334445677788889999999999777322 11111 24455666666566678999999999988876332221110
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHH--hCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRL--AGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~--~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
=.+..-.+..+..+.+++++..+...++.|+..... .++...+ .+...+++--+..++|.+.+. |+..-..|.
T Consensus 340 ~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A-Cr~~~~~c~ 415 (533)
T KOG2032|consen 340 LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA-CRSELRTCY 415 (533)
T ss_pred chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH-HHHHHHhcC
Confidence 012233566778889999999999988888865433 3333221 223334444556677766554 444444444
No 213
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.36 E-value=52 Score=33.69 Aligned_cols=92 Identities=16% Similarity=0.068 Sum_probs=50.7
Q ss_pred CHHHHHHHH-ccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ccch
Q psy15604 122 AIPELIKLL-NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH--RQGL 198 (986)
Q Consensus 122 ~i~~L~~ll-~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~--~~~~ 198 (986)
.++.+...| ++.++.++..+...+..++..+ +.+-......+.+-|.....+.+.+..+..+..+... +..+
T Consensus 122 ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~-----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~ 196 (234)
T PF12530_consen 122 LLPLLSGCLNQSCDEVAQALALEALAPLCEAE-----VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEE 196 (234)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhh
Confidence 467778888 7888899999999999999442 2221112233444344444555555444333333222 2233
Q ss_pred HHHHhcCChHHHHHhhCCCC
Q psy15604 199 LAIFKSGGIPALVKLLSSPV 218 (986)
Q Consensus 199 ~~i~~~g~i~~Lv~lL~~~~ 218 (986)
....+..++..+.++....+
T Consensus 197 ~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 197 YEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred hhHHHHHHHHHHHhhccccc
Confidence 33344456666666665554
No 214
>PRK09169 hypothetical protein; Validated
Probab=81.27 E-value=2.2e+02 Score=38.68 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHc-cCC-HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhh-ccCcc
Q psy15604 120 TRAIPELIKLLN-DED-QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQ 196 (986)
Q Consensus 120 ~g~i~~L~~ll~-~~~-~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~l-s~~~~ 196 (986)
...|..++.-++ -++ ...+..+..+=..|+..+..+..+-..+ +..++..|.+-++....+.++..|..- ..++.
T Consensus 162 ~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~--va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 162 AISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQE--VANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 444555555444 454 4444444444455667666766655432 577777777645444444444445444 33333
Q ss_pred chHHHHhcCChHHHHHhhCC-CCHhHHHHHHHHHHHHhcCCCCchHH
Q psy15604 197 GLLAIFKSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGSKMA 242 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~ 242 (986)
.... ++.-.+..+++-|+. ++.+....++..|.......+..+..
T Consensus 240 l~~~-l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~ 285 (2316)
T PRK09169 240 LLQS-LRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLA 285 (2316)
T ss_pred HHHh-cCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhh
Confidence 3322 222334444554543 34444444555554444344444443
No 215
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.92 E-value=70 Score=32.74 Aligned_cols=204 Identities=16% Similarity=0.124 Sum_probs=110.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc-cchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHH
Q psy15604 537 VAALVHAISNSNDLETTKGAVGTLHNLSHHR-QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 615 (986)
Q Consensus 537 i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v 615 (986)
++.|+.-+....++..+.....+|..++.++ .+... .+..+..+...+....+.-+...+..+-...+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 3455555666778999999999999999865 33322 34566666666666665555555555553333211
Q ss_pred HHhCcHHHHHHh--h------cC--CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHH
Q psy15604 616 RLAGGLQKMVLL--L------GR--NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRV 685 (986)
Q Consensus 616 ~~~g~v~~Lv~l--l------~~--~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~ 685 (986)
+.+..++.. + .. ...+..-..+.+++.+|...|+ .....+..+..++...+.+.....+..+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334443333 1 11 1234445556788888887665 1223466777777433336666677777
Q ss_pred HHHhhcCCCCchhHHh-cCcHHHHHHhhCCC-CHHHHHHHHHHHHHhhcccccc----cchhchHHHHHHHhccCChhhH
Q psy15604 686 LKVLSVCSSNKPAIVE-AGGMQALAMHLGHP-SQRLVQNCLWTLRNLSDAGTKV----DGLESLLQSLVQLLASQDINVI 759 (986)
Q Consensus 686 L~~Ls~~~~~~~~l~~-~g~~~~L~~ll~~~-~~~v~~~al~~L~nLs~~~~~~----~~~~~~l~~L~~ll~~~~~~i~ 759 (986)
+..|+. ..+++ ......+..-++.+ .|.+....+..+..+.....+. .....++..+-++..+.+.+..
T Consensus 146 l~~Lc~-----~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~ 220 (234)
T PF12530_consen 146 LAPLCE-----AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVA 220 (234)
T ss_pred HHHHHH-----HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchH
Confidence 777773 22222 22445555555444 3555554444444443222222 2223555555555555554433
Q ss_pred HH
Q psy15604 760 TC 761 (986)
Q Consensus 760 ~~ 761 (986)
.+
T Consensus 221 ~~ 222 (234)
T PF12530_consen 221 SQ 222 (234)
T ss_pred HH
Confidence 33
No 216
>KOG1967|consensus
Probab=80.62 E-value=8.9 Score=45.57 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhh-hCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccc
Q psy15604 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIM-NSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQG 197 (986)
Q Consensus 120 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~-~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~ 197 (986)
...+|.|+...+..+...+..=..+|..+-.+-.. +.+. +-+.++|.|++.|.- +|..+|..+..++.-+... +.-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhcccc
Confidence 45678888888877777788777788776654322 2232 223345556666665 6888888888877766544 222
Q ss_pred hHHHHhcCChHHHHHhhCCCC---HhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHH
Q psy15604 198 LLAIFKSGGIPALVKLLSSPV---ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDC 270 (986)
Q Consensus 198 ~~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~a 270 (986)
...-+ .-.||.+..+=++.+ ..++..|+.+|..|...-|...-.-.+-.++..|.+.|+++...++..|..+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 22211 135666666655555 4588999999999996455444444445667888888877665566655443
No 217
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.57 E-value=4.1 Score=34.44 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHH
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL 245 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 245 (986)
...+..|.+ +.+.+|..++..|.+|..... ....-..+++..+...|+++++-+-.+|+.+|..|+...+
T Consensus 6 ~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------- 75 (92)
T PF10363_consen 6 QEALSDLND-PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------- 75 (92)
T ss_pred HHHHHHccC-CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh--------
Confidence 444555666 577899999999999988755 2222234677788888999999999999999999995544
Q ss_pred cCcHHHHHHHhcc
Q psy15604 246 AGGLQKMVLLLGR 258 (986)
Q Consensus 246 ~g~i~~L~~ll~~ 258 (986)
..+++.|+....+
T Consensus 76 ~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 DEVLPILLDEYAD 88 (92)
T ss_pred HHHHHHHHHHHhC
Confidence 2346666665543
No 218
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.58 E-value=98 Score=33.63 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=109.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcc-cC-cchhHhhhCCch-HHHHHHHHhcC----CC--------HHHHHHHHHH
Q psy15604 123 IPELIKLLNDEDQVVVSQAAMMVHQLSK-KE-ASRHAIMNSPQM-VAALVHAISNS----ND--------LETTKGAVGT 187 (986)
Q Consensus 123 i~~L~~ll~~~~~~~~~~a~~~L~~la~-~~-~~~~~i~~~~~~-i~~Lv~lL~~~----~~--------~~~~~~a~~~ 187 (986)
+..+.+.|.+....+...+.+.|..+.. +. .....+...=.+ .+.+-+++... ++ +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788889998888888899999999987 44 444444443222 45666766421 11 2788888887
Q ss_pred HHhhccC--ccchHHHHh-cCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCch----HHHHHcCcHHHHHHHhccCC
Q psy15604 188 LHNLSHH--RQGLLAIFK-SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK----MAVRLAGGLQKMVLLLGRNN 260 (986)
Q Consensus 188 L~~ls~~--~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~----~~i~~~g~i~~L~~ll~~~~ 260 (986)
+..+... +..+..+.+ .+.+..+.+-|..+++++....+.+|..-...++... ..+.....+..|..+...++
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 7666554 455555554 4678889999999889999999999985443554333 34555667888999887766
Q ss_pred H----HHHHHHHHHHHHHhc
Q psy15604 261 V----KFLAIVTDCLQILAY 276 (986)
Q Consensus 261 ~----~~~~~a~~aL~~La~ 276 (986)
+ .+...+...|..++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 6 778888888888876
No 219
>KOG1820|consensus
Probab=79.19 E-value=61 Score=39.46 Aligned_cols=184 Identities=9% Similarity=0.030 Sum_probs=115.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIF 202 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~ 202 (986)
+.+..-+.+.+..-|..++..+.....++. .+......+.+..+++......+..+...|+..|..++.. ... ..=+
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHH
Confidence 445666667778888888888877776655 2222222344556666555546778888899999988776 322 2223
Q ss_pred hcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccCh-hh
Q psy15604 203 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ-ES 281 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~-~~ 281 (986)
..++.|.++..+....+.++..+..++-..+... .-...++.+...++..++.....+...+........ .+
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 4468899999998888887777777666665211 113456778888999999998877666655543221 11
Q ss_pred HHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHh
Q psy15604 282 KLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317 (986)
Q Consensus 282 ~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~L 317 (986)
...-.-.+.++.++......+ .+++.++..++..+
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAV 441 (815)
T ss_pred cchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHH
Confidence 111122234455555554444 45888887777543
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.71 E-value=8.4 Score=32.59 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=57.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHH
Q psy15604 705 MQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEA 775 (986)
Q Consensus 705 ~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~-~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~ 775 (986)
.......+.++.+.++..++..|++|..... ......+++..+...++++|+-+-..|..+|+-++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445566778889999999999999996666 5555678999999999999999999999999866665555
No 221
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=77.70 E-value=1.3e+02 Score=34.57 Aligned_cols=199 Identities=12% Similarity=0.037 Sum_probs=98.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhC
Q psy15604 540 LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG 619 (986)
Q Consensus 540 L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g 619 (986)
--+++.....++.+..+...|..+...........+.-....+ -.+..++--..-+.+|..|+.+..+... .+.+
T Consensus 33 ~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I---~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~ 107 (464)
T PF11864_consen 33 AKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI---SDPSNDDDFDLRLEALIALTDNGRDIDF--FEYE 107 (464)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHHcCCcCchh--cccc
Confidence 3345555556788888888888887744332111111111111 2233344444556667777766554422 3456
Q ss_pred cHHHHHHhhcCC---------------------------CHhHHHHHHHHHHHHhcCCcc-cHHHHHhCCChHHHHHHHh
Q psy15604 620 GLQKMVLLLGRN---------------------------NVKFLAIVTDCLQILAYGNQE-SKLIILASQGPVELVRIMR 671 (986)
Q Consensus 620 ~v~~Lv~ll~~~---------------------------~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~~~~L~~ll~ 671 (986)
..+.|...+..- +..........+.|+...+.. .....+. +.+..++.+..
T Consensus 108 i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~-~lv~~i~~iC~ 186 (464)
T PF11864_consen 108 IGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS-SLVDQICTICK 186 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHHHHh
Confidence 666666555210 122233344445555543321 1112222 34555555655
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHH
Q psy15604 672 SYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQL 750 (986)
Q Consensus 672 ~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~l 750 (986)
..+.+.....+..++-.+....... ..+. ..+..|+...... .+...+-.+++||...... ...+..|..+
T Consensus 187 ~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g----~~~i~~L~~i 258 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG----HSAIRTLCDI 258 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhccc--ccchhHHHHHHHHHcCccH----HHHHHHHHHH
Confidence 4443444455555555553332211 1111 2455566553333 6777788889999853322 3445777777
Q ss_pred hc
Q psy15604 751 LA 752 (986)
Q Consensus 751 l~ 752 (986)
|.
T Consensus 259 L~ 260 (464)
T PF11864_consen 259 LR 260 (464)
T ss_pred Hc
Confidence 73
No 222
>KOG4653|consensus
Probab=76.16 E-value=73 Score=38.13 Aligned_cols=185 Identities=14% Similarity=0.053 Sum_probs=108.5
Q ss_pred HHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHh
Q psy15604 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 158 (986)
Q Consensus 79 i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i 158 (986)
....+..+..+....+..+. ..+.+++++.+....+...+.+.....+|+++|+-+--.|.+.+..||.--
T Consensus 729 ~qeai~sl~d~qvpik~~gL---~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy------ 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGL---QMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY------ 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHH---HHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc------
Confidence 44445555666666655544 455555555555566778889999999999999999999988777777531
Q ss_pred hhCCchHHHHHHHHhcC---CCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhc
Q psy15604 159 MNSPQMVAALVHAISNS---NDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLL 234 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~---~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 234 (986)
.. .+++.+.+.-.+. ..++.+...-.++.++... .+-.....+ -.+..++...++++...+..++..++++|.
T Consensus 800 -~e-~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 800 -PE-DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred -ch-hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 11 2456666533221 1123343344555555443 222222222 345566667777777778899999999995
Q ss_pred CCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhc
Q psy15604 235 HQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 235 ~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~ 276 (986)
-..-.-.... ...+..++.+... +++.++..|+..+..+-.
T Consensus 877 ~~a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 877 LLAFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHhhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 3321111111 1234445555544 557777888777776644
No 223
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=75.85 E-value=5.9 Score=39.53 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccc------CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccc--hhhhhccCCh
Q psy15604 508 VVVSQAAMMVHQLSKKEASRHAIMNSP------QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG--LLAIFKSGGI 579 (986)
Q Consensus 508 ~~~~~a~~~L~~l~~~~~~~~~l~~~~------~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~~~~~i 579 (986)
.-|..|+.+|.+++-.+.+..-++.++ .++..|+.++...+++-.++.|...|.+++..++. +..-.+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 347789999999988888776666653 35566677777777899999999999999995543 3444568999
Q ss_pred HHHHHhcCCCCH
Q psy15604 580 PALVKLLSSPVE 591 (986)
Q Consensus 580 ~~Lv~lL~~~~~ 591 (986)
..|+.++.+...
T Consensus 219 ~~Li~FiE~a~~ 230 (257)
T PF12031_consen 219 SHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999875443
No 224
>KOG1248|consensus
Probab=75.08 E-value=2.3e+02 Score=35.55 Aligned_cols=216 Identities=17% Similarity=0.077 Sum_probs=119.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCccchhhhhc--cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcH
Q psy15604 545 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFK--SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGL 621 (986)
Q Consensus 545 ~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v 621 (986)
.+..+..+|..+..+|..++..+.+.....+ ......|..-+++.....+...+.+|..+....+. ..+.+ ...+
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I 740 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLI 740 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Confidence 3444688999999999999887444333222 11222333344555556677777777777654441 22222 2333
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHhc--CC----cccHHHHHhCCChHHHHHHHhcC-ChhHHHHHHH--HHHHHhhcC
Q psy15604 622 QKMVLLLGRNNVKFLAIVTDCLQILAY--GN----QESKLIILASQGPVELVRIMRSY-DYEKLLWCTS--RVLKVLSVC 692 (986)
Q Consensus 622 ~~Lv~ll~~~~~~v~~~a~~aL~~L~~--~~----~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~~~--~~L~~Ls~~ 692 (986)
+-++=.++..+...++.+..+|..++. .. .+.... .+...+.++... -.+..+..++ -++..+...
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~-----~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASA-----ILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 444444466688888899999988882 10 111112 233333333322 0112222222 222222211
Q ss_pred CCCc-hhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcc-cccccc--hhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 693 SSNK-PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA-GTKVDG--LESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 693 ~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~-~~~~~~--~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
..+. ....=.+.++.++.++.+.++.++..|.+.++-+... +.-+.. ...+++.+..|+++....++...-..|-
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111 1111123556666778899999999999999988833 333322 2358899999888877777766555554
No 225
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.68 E-value=29 Score=33.01 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=75.6
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCCh
Q psy15604 533 SPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK 612 (986)
Q Consensus 533 ~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 612 (986)
.+..++.|+.+|+.+.+..+++++.++|+.|..-+..+....+...-.. .-...+........ . ........
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l---~--~~~~~~~~ 79 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISL---P--MMGISPSS 79 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHH---h--hccCCCch
Confidence 3577888999998888899999999999999874443333221110000 00000111111111 1 11111122
Q ss_pred HHHHHhCcHHHHHHhhcCCC-HhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHH
Q psy15604 613 MAVRLAGGLQKMVLLLGRNN-VKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKV 688 (986)
Q Consensus 613 ~~v~~~g~v~~Lv~ll~~~~-~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~ 688 (986)
+...-..++..|+..+++++ ......+..++.++..........++. ..++.+++.+++.+. ..++...+-|..
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~~-~~~e~~~~qL~~ 154 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCPD-SLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCCH-HHHHHHHHHHHH
Confidence 23333455677777777653 233345566666665432122233343 467788888887664 555554444433
No 226
>KOG1020|consensus
Probab=74.52 E-value=2.7e+02 Score=36.06 Aligned_cols=136 Identities=10% Similarity=0.139 Sum_probs=88.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCcc-h-hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-R-HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLA 200 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~-~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 200 (986)
..++..+......+|..|.++|..+...+.. . ..-++. .+-.-+.+ ....+|+.|+..+++.-.. ++.-.+
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~-----~Vh~R~~D-ssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE-----AVHGRLND-SSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH-----HHHHhhcc-chhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4466677777788999999999998865422 1 111111 11122333 4678999999999976554 555555
Q ss_pred HHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhc
Q psy15604 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR---NNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 201 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~a~~aL~~La~ 276 (986)
+++ .+..-..++.-.+++.+++.+..+|...|+.-.. +....+++.. ++..++..+.+.+..+=+
T Consensus 893 yY~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 YYD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 544 4555556667789999999999999777654322 2334445533 334478888888888744
No 227
>KOG4653|consensus
Probab=74.37 E-value=40 Score=40.14 Aligned_cols=207 Identities=14% Similarity=0.013 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHh-
Q psy15604 549 DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL- 627 (986)
Q Consensus 549 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l- 627 (986)
.+.++-.+...|.++....+....+...+.+.....+|++.++-+--+|+..+..||.-.+ ...+|.+.+.
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~e~Y 811 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLSEEY 811 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHHHHH
Confidence 4667888888899998866777778889999999999999999898899988777874433 5666777663
Q ss_pred hcCC---CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc--hhHHhc
Q psy15604 628 LGRN---NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK--PAIVEA 702 (986)
Q Consensus 628 l~~~---~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~--~~l~~~ 702 (986)
.... .++.+-..-.++.++...-.+.-..... -.+...+...++++ ...+..++..+++|+.-.... ..+.
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd-~~~RaSS~a~lg~Lcq~~a~~vsd~~~-- 887 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPD-HEFRASSLANLGQLCQLLAFQVSDFFH-- 887 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCch-HHHHHhHHHHHHHHHHHHhhhhhHHHH--
Confidence 2221 1222223335666665532121111111 22334444445443 455666777777775432211 1222
Q ss_pred CcHHHHHHhhC-CCCHHHHHHHHHHHHHhhccccc-ccc-----hhchHHHHHHHhccC-ChhhHHHHHHHHh
Q psy15604 703 GGMQALAMHLG-HPSQRLVQNCLWTLRNLSDAGTK-VDG-----LESLLQSLVQLLASQ-DINVITCAAGVTV 767 (986)
Q Consensus 703 g~~~~L~~ll~-~~~~~v~~~al~~L~nLs~~~~~-~~~-----~~~~l~~L~~ll~~~-~~~i~~~a~~~L~ 767 (986)
.++..++.+.+ ++++.++++|...++.+-....+ +.. .-.....+.++++.+ +..++..||.++-
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 13334444443 45688999999998888743332 111 124455666677665 5557888888885
No 228
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=74.23 E-value=28 Score=36.54 Aligned_cols=146 Identities=18% Similarity=0.099 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcccCcchhHhhhCCch-HHHHHHHHhcC---CCHHHHHHHHHHHHhhccCccchHHHHhcC--ChHHHH
Q psy15604 138 VSQAAMMVHQLSKKEASRHAIMNSPQM-VAALVHAISNS---NDLETTKGAVGTLHNLSHHRQGLLAIFKSG--GIPALV 211 (986)
Q Consensus 138 ~~~a~~~L~~la~~~~~~~~i~~~~~~-i~~Lv~lL~~~---~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g--~i~~Lv 211 (986)
+--+.-+++-+..++.....+...++. ...+..++... ..+..+..++++++|+-.++.++..+.+.. .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 334444555555555554444443321 24444444432 467889999999999999988888777653 344444
Q ss_pred HhhCCC----CHhHHHHHHHHHHHHhcCCCCchH-HHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhccChhhHH
Q psy15604 212 KLLSSP----VESVLFYAITTLHNLLLHQEGSKM-AVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAYGNQESKL 283 (986)
Q Consensus 212 ~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~-~i~~~g~i~~L~~ll~~--~~~~~~~~a~~aL~~La~~~~~~~~ 283 (986)
..+... +..++..++..+.|++...-..+. .-.....+..+.+.+.. .+++..-...-++++|...++..+.
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 444433 677889999999999843211110 00001124445553322 5678888888999999875554443
No 229
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.85 E-value=17 Score=31.09 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=53.1
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHH
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITT 228 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 228 (986)
.+.+...++..|+..++. ++......++..|..+..+|.....+.+-|+++.|.++=..-++..+...-..
T Consensus 24 dl~~~~~Ll~~LleWFnf-~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 24 DLVKERLLLKQLLEWFNF-PPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHccHHHHHHHHHHHhCC-CCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344333467788888887 45558889999999999999999999999999998777665566555444333
No 230
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=73.80 E-value=13 Score=39.16 Aligned_cols=154 Identities=18% Similarity=0.094 Sum_probs=93.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccC-cHHHHHHhhcC---CCCHHHHHHHHHHHHHhhCCccchhh
Q psy15604 497 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQ-MVAALVHAISN---SNDLETTKGAVGTLHNLSHHRQGLLA 572 (986)
Q Consensus 497 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~-~i~~L~~lL~~---~~~~~~~~~a~~~L~~ls~~~~~~~~ 572 (986)
.+.+.+..-..+.+.-+...++-+..++.....+....+ ....+..++.. ...+..+..++++++|+-.++.++..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 344444444444455666677766666654444433322 23444444432 24678889999999999998888888
Q ss_pred hhccC--ChHHHHHhcCCC----CHhHHHHHHHHHHHhhcCCCCCh-HHHHHhCcHHHHHHhh-cC-CCHhHHHHHHHHH
Q psy15604 573 IFKSG--GIPALVKLLSSP----VESVLFYAITTLHNLLLHQEGSK-MAVRLAGGLQKMVLLL-GR-NNVKFLAIVTDCL 643 (986)
Q Consensus 573 i~~~~--~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~-~~v~~~g~v~~Lv~ll-~~-~~~~v~~~a~~aL 643 (986)
+.+.. .+...+..+... +..++..++..+.|++...-..+ ..-.....+..+++.+ .. .+++....+.-++
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 77643 355555544443 68899999999999985421111 1001122345555633 33 5888999999999
Q ss_pred HHHhcCC
Q psy15604 644 QILAYGN 650 (986)
Q Consensus 644 ~~L~~~~ 650 (986)
.+|....
T Consensus 227 GtL~~~~ 233 (268)
T PF08324_consen 227 GTLLSSS 233 (268)
T ss_dssp HHHHCCS
T ss_pred HHHhccC
Confidence 9999653
No 231
>KOG3665|consensus
Probab=73.33 E-value=2.2e+02 Score=34.52 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=91.4
Q ss_pred HHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccH--HHHHHHhCCCCH-H
Q psy15604 270 CLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGM--QALAMHLGHPSQ-R 346 (986)
Q Consensus 270 aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l--~~L~~ll~~~~~-~ 346 (986)
++.++...+++.+..+.+.||+..+.++++..+.+..+..+.+.+.+++......+......-+ ..+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888899999999999999999999998877778888999999988655443221111111 122223322222 4
Q ss_pred HHHHHHHHHhcccccccc----------------------------------cc----cc-cCCchHHHHHHHHHHHHHh
Q psy15604 347 LVQNCLWTLRNLSDAGTK----------------------------------VS----LL-FNEIENIQRVAAGLLCELA 387 (986)
Q Consensus 347 ~~~~~~~~L~~ls~~~~~----------------------------------i~----ll-~~~~~~~~~~a~~~L~~l~ 387 (986)
..+.+...|+.+...++. .. ++ .+..+..+.+|..++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 444555555544222110 11 12 2455667888999998887
Q ss_pred -hChhhHHHHHhcCCcHHHHHHhc
Q psy15604 388 -QDKEGAETIEAEGATAPLTDLLH 410 (986)
Q Consensus 388 -~~~~~~~~l~~~g~l~~Lv~ll~ 410 (986)
.++++++...+.|+++.+...-.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcch
Confidence 55678888888888887776543
No 232
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.17 E-value=18 Score=34.68 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhh-hcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC----Cccc
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI-MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH----HRQG 569 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l-~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~----~~~~ 569 (986)
+..+..++++.++..+-.++..+.-....... +.+ -.....+..++..|+..+++.+.+.++.+|..+-. .++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 44567788898888888888777777665432 222 11235688889999887788889999988888865 3333
Q ss_pred hhhhhc---cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC
Q psy15604 570 LLAIFK---SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG 610 (986)
Q Consensus 570 ~~~i~~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 610 (986)
...+.. .+.++.++++++. ......++.+|..+....+.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 333332 2233444454443 46667777777777765543
No 233
>KOG3665|consensus
Probab=72.73 E-value=1.8e+02 Score=35.25 Aligned_cols=91 Identities=18% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcH--HHHHHhhCCCC-HH
Q psy15604 642 CLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGM--QALAMHLGHPS-QR 718 (986)
Q Consensus 642 aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~--~~L~~ll~~~~-~~ 718 (986)
++++....+++....+++.+|...+.+.++..+.+.....+.+.+.+++...+.+........+ ..+..++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889998889999999999999999999998877888888899999998775443222111111 23333333333 36
Q ss_pred HHHHHHHHHHHhhc
Q psy15604 719 LVQNCLWTLRNLSD 732 (986)
Q Consensus 719 v~~~al~~L~nLs~ 732 (986)
.-..+...|..+..
T Consensus 574 rsY~~~siLa~ll~ 587 (699)
T KOG3665|consen 574 RSYNAASILALLLS 587 (699)
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777777763
No 234
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.51 E-value=1.6e+02 Score=33.77 Aligned_cols=112 Identities=20% Similarity=0.073 Sum_probs=71.9
Q ss_pred CChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc--cChhhH
Q psy15604 205 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY--GNQESK 282 (986)
Q Consensus 205 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~--~~~~~~ 282 (986)
|.+..+++-+.+++..++..++..|.-+. +.-.--....-.|.+..|.+-+-+..+-++..|..+|+.+-. ++++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 45666777778889999999999998888 321111123334555556555556677888888888887743 445444
Q ss_pred HHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHH
Q psy15604 283 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 327 (986)
Q Consensus 283 ~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 327 (986)
. +..|+.++++.....++. .+|.+++.+.+..+.+
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr---~allni~vdnsT~p~I 204 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRR---LALLNISVDNSTYPCI 204 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHH---HHHHHeeeCCCcchhH
Confidence 2 346777788766555765 4566777655554444
No 235
>KOG2137|consensus
Probab=67.86 E-value=57 Score=38.25 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=94.6
Q ss_pred hhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC
Q psy15604 487 DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 566 (986)
Q Consensus 487 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~ 566 (986)
..++....+|.|...+++.+..+|..++..+...+..-+ ...+.. .++|.+..+...+.+..++..++-++..+..
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~-~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q- 458 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQ-AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ- 458 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHH-HHHHHhhcchhcccchHHHHHHHHHHHHHHH-
Confidence 344556678888889999999999999999888766544 222332 5677777776556678899999999998872
Q ss_pred ccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCC
Q psy15604 567 RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 632 (986)
Q Consensus 567 ~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~ 632 (986)
......-..-+.++.+..+..++.+....+.+..++....... ..+....++|.++.+...+.
T Consensus 459 --~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 --RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred --HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2222222233455556667788888888887777777655433 33444677787777766654
No 236
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.19 E-value=33 Score=41.24 Aligned_cols=163 Identities=14% Similarity=0.087 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhcc-ccchhhhcccCcHHHHHHhhcC---CCCHHHHHHHHHHHHHhhC----C
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKE-ASRHAIMNSPQMVAALVHAISN---SNDLETTKGAVGTLHNLSH----H 566 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~~~~i~~L~~lL~~---~~~~~~~~~a~~~L~~ls~----~ 566 (986)
+..+.+++.+.+... ..+...|..+.... .+. ...+..+..+++. .+++.++..|+-+++.+.. .
T Consensus 397 v~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 455556666543222 23444555543333 221 2445556666543 2356677777777777754 2
Q ss_pred c------cchhhhhccCChHHHHHhcC----CCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC---CH
Q psy15604 567 R------QGLLAIFKSGGIPALVKLLS----SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN---NV 633 (986)
Q Consensus 567 ~------~~~~~i~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~---~~ 633 (986)
. ...........++.+...+. ..+.+-+..++.+|+|+. ....++.+...+... +.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccch
Confidence 1 01122223445566666554 456678888999999997 245677888877765 67
Q ss_pred hHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC-ChhHHHHHHH
Q psy15604 634 KFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY-DYEKLLWCTS 683 (986)
Q Consensus 634 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~~~ 683 (986)
.++..|.++|+.+....|+ .+.+.++.++.+. .+.++|-+|.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHH
Confidence 7888999999988654321 2345777777765 3455665543
No 237
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.66 E-value=29 Score=40.03 Aligned_cols=131 Identities=17% Similarity=0.156 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHH
Q psy15604 133 EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALV 211 (986)
Q Consensus 133 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv 211 (986)
.|+.++..|-..|.++-.-+. .+-.. -+|.|+..+...++|.+|..|.-.|+.+... ....+.. -..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~---~fc~e--hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSF---EFCSE--HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhH---HHHHH--HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 578888888777776443210 12222 2599999999879999999999999988665 3333322 34677
Q ss_pred HhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccC
Q psy15604 212 KLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 278 (986)
Q Consensus 212 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~ 278 (986)
+.|.+.+.+++..|..++..|.... .+.-.|-.+.+..+|.+++..+...|-..+..+|..+
T Consensus 978 rrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 8888889999999999999988432 2333577889999999998888888888888887644
No 238
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=66.25 E-value=2.9e+02 Score=33.14 Aligned_cols=136 Identities=14% Similarity=0.028 Sum_probs=67.4
Q ss_pred cHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC---ChhHHHHHHHHHHHHh----hcC
Q psy15604 620 GLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY---DYEKLLWCTSRVLKVL----SVC 692 (986)
Q Consensus 620 ~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~~~~~~~~~~L~~L----s~~ 692 (986)
++..+.+++.+....-. .+.+.+..|......+...+ +..+..+++.+ +...+...+.-+++.| +..
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 34556666666432222 23444555544321222222 33444555432 3344555555555555 111
Q ss_pred C------CCchhHHhcCcHHHHHHhhC----CCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccC---ChhhH
Q psy15604 693 S------SNKPAIVEAGGMQALAMHLG----HPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQ---DINVI 759 (986)
Q Consensus 693 ~------~~~~~l~~~g~~~~L~~ll~----~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~---~~~i~ 759 (986)
. ......+....++.|...+. ..+..-+.-++.+|+|+-. ...++.+..++.+. ...+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R 541 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIR 541 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHH
Confidence 1 01111112234555555443 4566777888999999842 35678888887765 66889
Q ss_pred HHHHHHHhhh
Q psy15604 760 TCAAGVTVCQ 769 (986)
Q Consensus 760 ~~a~~~L~ni 769 (986)
..|.|+|.++
T Consensus 542 ~~Ai~Alr~~ 551 (618)
T PF01347_consen 542 VAAIQALRRL 551 (618)
T ss_dssp HHHHHTTTTG
T ss_pred HHHHHHHHHH
Confidence 8999988743
No 239
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.06 E-value=18 Score=31.31 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCC
Q psy15604 137 VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS 216 (986)
Q Consensus 137 ~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~ 216 (986)
++..+...=..+..+...|.+....+ .. ++.+ +--.......|..|+..|+.-..+++.|+++.|+.+|.+
T Consensus 28 lkklvl~fek~i~kN~e~R~K~~ddP---~K---FmdS---E~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 28 LKKLVLSFEKRINKNQEMRIKYPDDP---EK---FMDS---EVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCCCH---HH---HHHh---HHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC
Confidence 44444444444555555555554443 11 2222 223445666788899999999999999999999999998
Q ss_pred CCHhHHH
Q psy15604 217 PVESVLF 223 (986)
Q Consensus 217 ~~~~~~~ 223 (986)
.+.++..
T Consensus 99 eN~DIai 105 (108)
T PF08216_consen 99 ENTDIAI 105 (108)
T ss_pred CCcceeh
Confidence 8877643
No 240
>KOG1243|consensus
Probab=65.41 E-value=68 Score=37.49 Aligned_cols=184 Identities=17% Similarity=0.112 Sum_probs=110.8
Q ss_pred hccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCccc
Q psy15604 574 FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQES 653 (986)
Q Consensus 574 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~ 653 (986)
++.+.+|.++++++.++..+|..-+.-+-+ ..+.....+.+..++|.+..-+.+.++.++.....++..|+-.- +
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~---~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL--~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEK---YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL--S 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHH---HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh--c
Confidence 567889999999999999998765444433 34445556666788899999999999999999888888877521 1
Q ss_pred HHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcH-HHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15604 654 KLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGM-QALAMHLGHPSQRLVQNCLWTLRNLSD 732 (986)
Q Consensus 654 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~-~~L~~ll~~~~~~v~~~al~~L~nLs~ 732 (986)
+. .+.....+.+.++ +..+...++...+-+|.-++... ....+.+++ .++.+-+.++-..-+..+.+.++-...
T Consensus 402 ~~-~Ln~Ellr~~ar~-q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 402 KR-NLNGELLRYLARL-QPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred hh-hhcHHHHHHHHhh-CccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 11 1221122222222 22222334444433444333321 122233332 345555666666677777777776554
Q ss_pred ccccccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 733 AGTKVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 733 ~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
.-.+......+++.+.-+.-+++..++..|-.++.
T Consensus 477 ~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 477 YFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred ccchhhhhhhccccccccccCcccchhhHHHHHHH
Confidence 44444444567777777777777777777666654
No 241
>KOG1020|consensus
Probab=63.45 E-value=4.5e+02 Score=34.27 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChh
Q psy15604 699 IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDIN 757 (986)
Q Consensus 699 l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~ 757 (986)
.+..+++..|..+.++.+..++..|+..|+.++-..+.......+...+-..+.+.+.+
T Consensus 1221 ~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1221 TLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSD 1279 (1692)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhccc
Confidence 34455666677777778899999999999998855555544455555555666655433
No 242
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=62.69 E-value=75 Score=37.79 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=76.3
Q ss_pred CcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhC----CccchhhhhccCChHHHHHhcC----CCCHhHHHHHHHHHHH
Q psy15604 535 QMVAALVHAISNS---NDLETTKGAVGTLHNLSH----HRQGLLAIFKSGGIPALVKLLS----SPVESVLFYAITTLHN 603 (986)
Q Consensus 535 ~~i~~L~~lL~~~---~~~~~~~~a~~~L~~ls~----~~~~~~~i~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~n 603 (986)
..+..+..++.+. ..+.++..|.-+++.+.. ..+.+...+....++.+...|. ..+.+-+...+.+|+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 5677777777543 345566666666666643 2222111122335566665553 3455566778889998
Q ss_pred hhcCCCCChHHHHHhCcHHHHHHhhc-C--CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC-ChhHHH
Q psy15604 604 LLLHQEGSKMAVRLAGGLQKMVLLLG-R--NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY-DYEKLL 679 (986)
Q Consensus 604 l~~~~~~~~~~v~~~g~v~~Lv~ll~-~--~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~ 679 (986)
+.. ...++.+...+. . .++.++..|.++|+.++...|. ..-+.++.++.+. .+.+++
T Consensus 473 ~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHH
Confidence 873 334555555555 2 2567899999999988764332 3445677777664 345566
Q ss_pred HHHH
Q psy15604 680 WCTS 683 (986)
Q Consensus 680 ~~~~ 683 (986)
.+|.
T Consensus 534 iaA~ 537 (574)
T smart00638 534 MAAV 537 (574)
T ss_pred HHHH
Confidence 5543
No 243
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.12 E-value=36 Score=39.31 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHH
Q psy15604 505 EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVK 584 (986)
Q Consensus 505 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~ 584 (986)
.|+++|..|.-.|..+-.-.. ... ...+|.|+..+..+++|.++.+|+-.|+.+.-+-.+.. ...-..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~---~fc--~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~----de~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSF---EFC--SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA----DEHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhH---HHH--HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhh----HHHHHHHHH
Confidence 578888888888877632221 111 15588888888877889999988888887765321110 112245566
Q ss_pred hcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcC
Q psy15604 585 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 585 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~ 649 (986)
-|.+.+..|++.++.++.++.... .+.-.|-++.+..+|..++.++...|-..+..++..
T Consensus 979 rL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 677778889999999999888432 233356778888889888888877777777766653
No 244
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.96 E-value=51 Score=32.02 Aligned_cols=106 Identities=20% Similarity=0.139 Sum_probs=67.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhhhccccchhhhcc-------------------cCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy15604 501 LLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS-------------------PQMVAALVHAISNSNDLETTKGAVGTLH 561 (986)
Q Consensus 501 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-------------------~~~i~~L~~lL~~~~~~~~~~~a~~~L~ 561 (986)
+++|+++.+|..|+.++..+-......-...++ ......|+..|+.+.+..+......+|.
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 566777777777777776664433211000000 0244566677777777888889999999
Q ss_pred HhhC-CccchhhhhccCChHH----HHHhcCCCCHhHHHHHHHHHHHhhcCCC
Q psy15604 562 NLSH-HRQGLLAIFKSGGIPA----LVKLLSSPVESVLFYAITTLHNLLLHQE 609 (986)
Q Consensus 562 ~ls~-~~~~~~~i~~~~~i~~----Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 609 (986)
.+.. .+-++- +.|.++. +..++.+.|.+++..++.+++-+..-.+
T Consensus 128 ~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 128 VLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 9987 443332 2344444 4456678889999999999988876544
No 245
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=59.91 E-value=51 Score=32.51 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcccCcchhHhhhCCchHHHHH-HHHhc----CCCHHHHHHHHHHHHhhccCc--cchHHHHhcCChH
Q psy15604 136 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV-HAISN----SNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIP 208 (986)
Q Consensus 136 ~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv-~lL~~----~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~ 208 (986)
.-.+.+...|..++.+|+.+..+.+.. + +.++ ..|.. .+-+..|..++..++.|-.++ .....+....+||
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~Ah-i-plflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAH-I-PLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecc-c-ceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 345677888899999999999888774 3 4432 33432 233568888999999998883 4555666778999
Q ss_pred HHHHhhCCCCHhHHHHHHHHHHHHhcCCC
Q psy15604 209 ALVKLLSSPVESVLFYAITTLHNLLLHQE 237 (986)
Q Consensus 209 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 237 (986)
.+++.+..+++-.+..++.++..+..++.
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccch
Confidence 99999999888888888888887774443
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.65 E-value=24 Score=32.77 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=58.2
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~ 194 (986)
++..|.+-+.++++.++..|+.+|..+..+- .....+.+. .++..|+.++....++.++..++..+...+..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASR-EFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 5566778888999999999999999999873 455566654 58899999888667889999999988887654
No 247
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=59.37 E-value=44 Score=32.92 Aligned_cols=140 Identities=15% Similarity=0.187 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhhccccchhhhcc--cCcHHHHHHhh-cCCCCHHHHHHHHHHHHHhhCCc--cchhhhhccCChHHHHH
Q psy15604 510 VSQAAMMVHQLSKKEASRHAIMNS--PQMVAALVHAI-SNSNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIPALVK 584 (986)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~l~~~--~~~i~~L~~lL-~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~i~~Lv~ 584 (986)
...|+..|.-+++++..+..+++. +-.+-.++... +++....++..+.+.++.+..++ +....+.....+|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 456677777778888776666653 11222222322 22334678888999999998733 34566677899999999
Q ss_pred hcCCCCHhHHHHHHHHHHHhhcCCCCChHHHH---H----hCcHHHHHHh-hcCCCHhHHHHHHHHHHHHhcC
Q psy15604 585 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVR---L----AGGLQKMVLL-LGRNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 585 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~---~----~g~v~~Lv~l-l~~~~~~v~~~a~~aL~~L~~~ 649 (986)
.+..+++-.+..|+..++.+..++...+-... . ...+..++.. .......+...+.++--.|+.+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999999999999999999977765332211 1 1122333332 2334666667766666666643
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.72 E-value=50 Score=31.42 Aligned_cols=138 Identities=11% Similarity=-0.014 Sum_probs=66.9
Q ss_pred hHHHHHhhCCC-CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHH
Q psy15604 207 IPALVKLLSSP-VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLII 285 (986)
Q Consensus 207 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~ 285 (986)
++.|.++|+.+ +..++..++++|+.+..-++...+.+....- .-. -...+..... ..+.+... ....+..
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~---~~l~~~~~--~~~~ee~ 82 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTD---ISLPMMGI--SPSSEEY 82 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchh---hHHhhccC--CCchHHH
Confidence 45667777655 5889999999999999766533332221111 000 0000011111 11111111 0012223
Q ss_pred HhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHH
Q psy15604 286 LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLW 353 (986)
Q Consensus 286 ~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~ 353 (986)
.-.-++..|+++++.++...-+..+..++..+-...+.+..-.=...+|.++..+....+..++...+
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~ 150 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQ 150 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence 33346678888888776654555666666555533222211112345667766666544444443333
No 249
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.99 E-value=1.4e+02 Score=35.45 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=93.5
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccC----CHHHHHHHHHHHHHhcc--
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE----DQVVVSQAAMMVHQLSK-- 150 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~la~-- 150 (986)
.++..+.+.+.++..... .++..+..+......+ ....+..+..+++++ .+.++..|...+++|..
T Consensus 357 ~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~P-------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 357 PALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYP-------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcC-------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 456666666766654432 2334443443322221 122456667777654 35577777777777664
Q ss_pred --cCcch-hHhhhCCchHHHHHHHHhc---CCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhC-C--CCHhH
Q psy15604 151 --KEASR-HAIMNSPQMVAALVHAISN---SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS-S--PVESV 221 (986)
Q Consensus 151 --~~~~~-~~i~~~~~~i~~Lv~lL~~---~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~-~--~~~~~ 221 (986)
+.... ..+.+. +++.+...|.. ..|.+.+...+.+|+|+... ..++.+...+. . ....+
T Consensus 429 c~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~i 496 (574)
T smart00638 429 CVNTPSCPDFVLEE--LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFI 496 (574)
T ss_pred hcCCCCCChhhHHH--HHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHH
Confidence 22111 222222 45666666543 25666778888999998332 24455555554 2 24579
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHH
Q psy15604 222 LFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCL 271 (986)
Q Consensus 222 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~aL 271 (986)
+..|+.+|..++...+ ..+-+.++.++.+ .+++++..|...|
T Consensus 497 R~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 497 RLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999885443 2234556677755 4455665544444
No 250
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=55.17 E-value=2.7e+02 Score=29.07 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=79.7
Q ss_pred HHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcccCcchhHh
Q psy15604 81 ELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND--EDQVVVSQAAMMVHQLSKKEASRHAI 158 (986)
Q Consensus 81 ~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~la~~~~~~~~i 158 (986)
.|-..|++++...|..|...|..+..-+... .+...-+..|+..+.+ .|......++..+..|...+......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-----~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-----FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-----hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh
Confidence 3556678888888888888776665532211 1233334555554443 35555555567776666544322222
Q ss_pred hhCCchHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCccchHHHHh--cCChHHHHHhhCC-CCHhHHHHHHHHHHHHhc
Q psy15604 159 MNSPQMVAALVHAISN-SNDLETTKGAVGTLHNLSHHRQGLLAIFK--SGGIPALVKLLSS-PVESVLFYAITTLHNLLL 234 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~ 234 (986)
... ++..+.+-... .-....|..+...|..+..+. ...+.. .+.+..+++.... .||.....+...+..+..
T Consensus 78 ~~~--i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 AVK--ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHH--HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 111 22333221111 123567888888888876552 222222 2456667777754 488877777777776664
Q ss_pred CC
Q psy15604 235 HQ 236 (986)
Q Consensus 235 ~~ 236 (986)
..
T Consensus 154 ~~ 155 (262)
T PF14500_consen 154 EF 155 (262)
T ss_pred hc
Confidence 43
No 251
>KOG0301|consensus
Probab=54.09 E-value=1.9e+02 Score=33.72 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=77.6
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHH---HhcCCCHHHHHHHHHHHHhhccC--cc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHA---ISNSNDLETTKGAVGTLHNLSHH--RQ 196 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~l---L~~~~~~~~~~~a~~~L~~ls~~--~~ 196 (986)
.+..++..+. .++.-+..++++|.|+..++..++.+...- ..+... ....++..++.+-+....|++.. ..
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~---~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~ 665 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL---ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQD 665 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH---HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhc
Confidence 4455555555 557778889999999999988888776541 222222 33434556666555555555443 12
Q ss_pred chHHHHhcCChHHHHHhhCC---C--CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc
Q psy15604 197 GLLAIFKSGGIPALVKLLSS---P--VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 258 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL~~---~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 258 (986)
+-+ .|+.+.+...+.. + +-+.....+.+|++|+. .+.....+.+.-.+..+++-+++
T Consensus 666 ~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t-~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 666 NEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT-VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc-ccHHHHHHHHhcCHHHHHHHHHH
Confidence 111 4566666555532 2 22345677888899994 44456666666677777777755
No 252
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=54.08 E-value=2.7e+02 Score=28.73 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=47.7
Q ss_pred hCCCHHHHHHHHccCCHH--------HHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-CCHHHHHHHHHHHH
Q psy15604 119 ATRAIPELIKLLNDEDQV--------VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLH 189 (986)
Q Consensus 119 ~~g~i~~L~~ll~~~~~~--------~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~~a~~~L~ 189 (986)
+..+.+.++++++.++.. +-..-..+|+.++. |-++.|-+++.+. -+.-+|..|..+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 456889999999866542 22222233333332 2357777777653 36779999999999
Q ss_pred hhccC-ccchHHHHh
Q psy15604 190 NLSHH-RQGLLAIFK 203 (986)
Q Consensus 190 ~ls~~-~~~~~~i~~ 203 (986)
.+... +..|+.+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 99887 666776665
No 253
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=53.20 E-value=99 Score=28.31 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=63.1
Q ss_pred HHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcC--CCCHHH
Q psy15604 476 HAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISN--SNDLET 552 (986)
Q Consensus 476 ~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~--~~~~~~ 552 (986)
-.+.++++... .....++..|-+-++++++.++..|+..|-.+..+-.. ....+.+..++..|+.++.. ..++.+
T Consensus 22 l~icd~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~V 99 (133)
T cd03561 22 LELCDLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKV 99 (133)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHH
Confidence 34555555431 12244577888889999999999999999999887654 33444434777778888865 457889
Q ss_pred HHHHHHHHHHhhC
Q psy15604 553 TKGAVGTLHNLSH 565 (986)
Q Consensus 553 ~~~a~~~L~~ls~ 565 (986)
+..+...+...+.
T Consensus 100 k~kil~ll~~W~~ 112 (133)
T cd03561 100 REKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888765
No 254
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.87 E-value=42 Score=31.24 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=57.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~ 194 (986)
++..|.+-+.+.++.++..|+.+|..+..+- .....+... .++..|+.++....++.++..++..+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4555677788899999999999999999875 455666654 48899999888757889999999988887654
No 255
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=52.49 E-value=4.8e+02 Score=31.20 Aligned_cols=233 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred CcHHHHHHhhcCC-------CCHHHHHHHHHHHHHhhC---CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHh
Q psy15604 535 QMVAALVHAISNS-------NDLETTKGAVGTLHNLSH---HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604 (986)
Q Consensus 535 ~~i~~L~~lL~~~-------~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl 604 (986)
|+++.+.+.|... +++.-.+.|.+.++++.. .+.-..-+.+.-.++.++..++++.--.+..|+..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Q ss_pred hcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC-cccHHHHHhCCChHHHHHHHhcCChhHHHHHHH
Q psy15604 605 LLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN-QESKLIILASQGPVELVRIMRSYDYEKLLWCTS 683 (986)
Q Consensus 605 ~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 683 (986)
.++.++...-..+.+....++++++-.++-.|+-|+.-+.++. ...+..-.-++..+.|+.+-...+.+.+-..--
T Consensus 488 ---eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe 564 (970)
T COG5656 488 ---EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME 564 (970)
T ss_pred ---HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH
Q ss_pred HHHHHhhcCCCCchhHHhcCcHHHHHHhh----------CCCCHHHHHHHHHHHHHhh---ccccccc-----chhchHH
Q psy15604 684 RVLKVLSVCSSNKPAIVEAGGMQALAMHL----------GHPSQRLVQNCLWTLRNLS---DAGTKVD-----GLESLLQ 745 (986)
Q Consensus 684 ~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll----------~~~~~~v~~~al~~L~nLs---~~~~~~~-----~~~~~l~ 745 (986)
....+.+..-.--..-+....++..+++. .+...+=+..|.+.|+.+. -.-.+.+ ....+.|
T Consensus 565 ~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slyp 644 (970)
T COG5656 565 SFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYP 644 (970)
T ss_pred HHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q ss_pred HHHHHhccCChhhHHHHHHHHhhhc
Q psy15604 746 SLVQLLASQDINVITCAAGVTVCQV 770 (986)
Q Consensus 746 ~L~~ll~~~~~~i~~~a~~~L~ni~ 770 (986)
.+--.+.+...+.-.+|+..+.+-+
T Consensus 645 vi~Filkn~i~dfy~Ea~dildg~t 669 (970)
T COG5656 645 VISFILKNEISDFYQEALDILDGYT 669 (970)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhh
No 256
>KOG2676|consensus
Probab=52.34 E-value=17 Score=38.22 Aligned_cols=62 Identities=21% Similarity=0.156 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCCCChHHHHHhCcHHHHHHh--hcCCCHhHHHHHHHHHHHHhcCCcccHHHHH
Q psy15604 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLL--LGRNNVKFLAIVTDCLQILAYGNQESKLIIL 658 (986)
Q Consensus 597 a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l--l~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 658 (986)
....++++|+..+..++.+++.||++.++.- +.+.+|-+......|+++|..+|.+++..+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 6678999999999999999999999987764 4456899999999999999998877766553
No 257
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.34 E-value=3.4e+02 Score=29.46 Aligned_cols=158 Identities=12% Similarity=0.074 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cc-cchhhhhc--cCChHHHHHhcCCC-----C--------HhHHHHHHH
Q psy15604 537 VAALVHAISNSNDLETTKGAVGTLHNLSH-HR-QGLLAIFK--SGGIPALVKLLSSP-----V--------ESVLFYAIT 599 (986)
Q Consensus 537 i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~-~~~~~i~~--~~~i~~Lv~lL~~~-----~--------~~v~~~a~~ 599 (986)
++.+...|... .+.+...+...|..+.. .. .....+.+ .-..+.+-+++... . +++|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 45555666554 35566677777777776 32 23333333 22233444444211 1 278888888
Q ss_pred HHHHhhcCCCC-C-hHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC----cccHHHHHhCCChHHHHHHHhcC
Q psy15604 600 TLHNLLLHQEG-S-KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN----QESKLIILASQGPVELVRIMRSY 673 (986)
Q Consensus 600 aL~nl~~~~~~-~-~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~----~~~~~~~~~~~~~~~L~~ll~~~ 673 (986)
.+..+....+. . ++.+.+.+.+..+.+-|..+++++......+|..-...+ ...|..+.....+..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 77666655443 4 444445556777888888888888888888888533322 34566677777788888866555
Q ss_pred Ch---hHHHHHHHHHHHHhhcCCCC
Q psy15604 674 DY---EKLLWCTSRVLKVLSVCSSN 695 (986)
Q Consensus 674 ~~---~~~~~~~~~~L~~Ls~~~~~ 695 (986)
+. ..+.+.+-..|..++..+..
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCc
Confidence 42 25666667777777766543
No 258
>KOG2933|consensus
Probab=51.68 E-value=66 Score=33.66 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=78.9
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhc
Q psy15604 623 KMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEA 702 (986)
Q Consensus 623 ~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~ 702 (986)
..+..|.+.+-...--....++.|+..+++.....+. ..+..+++-+++.. ..+-.++|.++.-+...-.++ +.+
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~--i~~- 166 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNS--IDQ- 166 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHH--HHH-
Confidence 3444455555444445555566666554544444443 24456666666665 334456666666654432222 111
Q ss_pred CcHHHHHHhhCC----CCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhh
Q psy15604 703 GGMQALAMHLGH----PSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVC 768 (986)
Q Consensus 703 g~~~~L~~ll~~----~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~n 768 (986)
.++.++..|-+ ++.-|+..|..+|..+.+..+. ..+++.|...+++.++.++..++.+.+|
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 34444443322 2345788888999888765443 2456777777888899999999988875
No 259
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=51.55 E-value=1.6e+02 Score=30.38 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=63.6
Q ss_pred chHHHHHHHHhcCC----------CHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHh--------HHHH
Q psy15604 163 QMVAALVHAISNSN----------DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVES--------VLFY 224 (986)
Q Consensus 163 ~~i~~Lv~lL~~~~----------~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--------~~~~ 224 (986)
.++|.|+.+|.... +....-.|+..|+.+ .+.-+.|+++++++.++.. +-..
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~ 100 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITED 100 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhH
Confidence 35677777775421 112234455555544 4456899999999766532 2233
Q ss_pred HHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCC--HHHHHHHHHHHHHHhccChhhHHHH
Q psy15604 225 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN--VKFLAIVTDCLQILAYGNQESKLII 285 (986)
Q Consensus 225 a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~a~~aL~~La~~~~~~~~~~ 285 (986)
...+|+.++ .|-++.|..++.+++ .-++..+..+|..++..++..|..+
T Consensus 101 l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~v 151 (249)
T PF06685_consen 101 LPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEV 151 (249)
T ss_pred HHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 344444444 566888888887754 4567788888988888777666654
No 260
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.40 E-value=83 Score=28.83 Aligned_cols=87 Identities=22% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHH-HHH
Q psy15604 477 AVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLE-TTK 554 (986)
Q Consensus 477 a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~-~~~ 554 (986)
.+.++++.. ......++..|.+-+++.++.++..|+..|-.+..+-. .....+.+.+++..|..++....+.. ++.
T Consensus 23 ~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~ 100 (133)
T smart00288 23 EICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKK 100 (133)
T ss_pred HHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHH
Confidence 344555443 12234557788888999999999999999999987743 33333344588999999886654433 888
Q ss_pred HHHHHHHHhhC
Q psy15604 555 GAVGTLHNLSH 565 (986)
Q Consensus 555 ~a~~~L~~ls~ 565 (986)
.+...+...+.
T Consensus 101 kil~li~~W~~ 111 (133)
T smart00288 101 RILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHH
Confidence 88877777755
No 261
>KOG1949|consensus
Probab=51.02 E-value=2.9e+02 Score=32.52 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=89.7
Q ss_pred ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-C----hHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcc
Q psy15604 578 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-S----KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE 652 (986)
Q Consensus 578 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~----~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~ 652 (986)
.=|.+.+-|+-++..|+.+|+..+.++---.++ . .+.+. .+-...|.++|.++-|.++..+..-+....+.-
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-- 251 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-- 251 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--
Confidence 335667778888999999999999888744322 2 22333 233566889999999999998877666554321
Q ss_pred cHHHHHhCCChH----HHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q psy15604 653 SKLIILASQGPV----ELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728 (986)
Q Consensus 653 ~~~~~~~~~~~~----~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~ 728 (986)
..++-+..+. .+..-+......+++..+...|.++...+.....+ + -.+++|-..+.+.++.|+.++...|-
T Consensus 252 --We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 252 --WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred --HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhccchhHHHHHHHHHH
Confidence 1111112222 22222222233456666666777777766544333 2 24566666777788899988876665
Q ss_pred Hhh
Q psy15604 729 NLS 731 (986)
Q Consensus 729 nLs 731 (986)
.|-
T Consensus 328 ~ik 330 (1005)
T KOG1949|consen 328 KIK 330 (1005)
T ss_pred HHH
Confidence 554
No 262
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=50.92 E-value=3.1e+02 Score=28.57 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHccCC----HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-
Q psy15604 120 TRAIPELIKLLNDED----QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH- 194 (986)
Q Consensus 120 ~g~i~~L~~ll~~~~----~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~- 194 (986)
.+.+|.++.-+.+++ ......++..|..+|..... ++ +..+......+.-.+.......+...++..
T Consensus 110 la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~-------~~-La~il~~ya~~~fr~~~dfl~~v~~~l~~~f 181 (262)
T PF14225_consen 110 LALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL-------PN-LARILSSYAKGRFRDKDDFLSQVVSYLREAF 181 (262)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCC-------cc-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 445566777776666 23445667888888844321 22 344444444333333334444444444332
Q ss_pred -ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCC
Q psy15604 195 -RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 260 (986)
Q Consensus 195 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~ 260 (986)
|+. +...+..|+.+|..+.+.++..++..|+.+...-+ .+.. .....+.++++++.++.
T Consensus 182 ~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d-~~~~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 182 FPDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD-MRSP-HGADLISPLLRLLQTDL 241 (262)
T ss_pred Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc-CCCC-cchHHHHHHHHHhCCcc
Confidence 222 22356678999999999999999999999995543 4433 33557999999997764
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=50.65 E-value=54 Score=30.44 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=58.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~ 565 (986)
..++..+.+-+++.++.++..|+..|-.+..+-. ..+..+.+.+++..|+.++....++.++..++..+...+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4457788888899999999999999998877743 3333334458999999988766678999999888888765
No 264
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=50.55 E-value=3.2e+02 Score=28.54 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=112.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhCCccchhhhhcc
Q psy15604 498 LIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS-NSNDLETTKGAVGTLHNLSHHRQGLLAIFKS 576 (986)
Q Consensus 498 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 576 (986)
|-..|.++|+.+|.+|+..|......-+.. .+.. .-+..|++++. +-.|......++.++..|....... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~L~~-~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD--FLSR-QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----P 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--hccH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----h
Confidence 445688899999999999998774433210 0111 22445555442 1134455555566666665422211 1
Q ss_pred CChHHHHH-hcC-----CCCHhHHHHHHHHHHHhhcCCCCChHHHHH--hCcHHHHHHhhcCC-CHhHHHHHHHHHHHHh
Q psy15604 577 GGIPALVK-LLS-----SPVESVLFYAITTLHNLLLHQEGSKMAVRL--AGGLQKMVLLLGRN-NVKFLAIVTDCLQILA 647 (986)
Q Consensus 577 ~~i~~Lv~-lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~--~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~ 647 (986)
+....+++ +.+ +.....|..+...|..+..+.. ..+.. .+.+..+++++..+ +|+-+-.+...+..+.
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 11222222 222 2334667777777777775432 22222 34566777777764 8888888888888777
Q ss_pred cCCcccHHHHHhCCChHHHHHHHhcC----------Ch-hHHHHHHHHHHH-HhhcCCCCchhHHhcCcHHHHHHhhCCC
Q psy15604 648 YGNQESKLIILASQGPVELVRIMRSY----------DY-EKLLWCTSRVLK-VLSVCSSNKPAIVEAGGMQALAMHLGHP 715 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~L~~ll~~~----------~~-~~~~~~~~~~L~-~Ls~~~~~~~~l~~~g~~~~L~~ll~~~ 715 (986)
...+. ....+.+.+.+..+ ++ ....+.....|. .++..+ .+ ..-+++.|.+=|.+.
T Consensus 153 ~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~f-a~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 153 QEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LF-APFAFPLLLEKLDST 220 (262)
T ss_pred Hhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hh-HHHHHHHHHHHHcCC
Confidence 64321 23344444444221 11 111122222222 233221 12 234677788888888
Q ss_pred CHHHHHHHHHHHHHhh
Q psy15604 716 SQRLVQNCLWTLRNLS 731 (986)
Q Consensus 716 ~~~v~~~al~~L~nLs 731 (986)
++.+...++.+|..-.
T Consensus 221 ~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACI 236 (262)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 8888888887776544
No 265
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.06 E-value=21 Score=30.99 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHH
Q psy15604 679 LWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQ 721 (986)
Q Consensus 679 ~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~ 721 (986)
+......+..|+..|..-..+++.|+++.|+.+|.|++.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3556778889999998889999999999999999999877643
No 266
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=48.73 E-value=1.5e+02 Score=28.85 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=58.0
Q ss_pred hhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHh-CC-------------------ChHHHHHHHhcCChhHHHHHHHHHH
Q psy15604 627 LLGRNNVKFLAIVTDCLQILAYGNQESKLIILA-SQ-------------------GPVELVRIMRSYDYEKLLWCTSRVL 686 (986)
Q Consensus 627 ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~-~~-------------------~~~~L~~ll~~~~~~~~~~~~~~~L 686 (986)
++.+++++++..++.++..|-.+... -....+ .+ .-..|+..++.+...........++
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l 126 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKP-FLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL 126 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHH-HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667788888888888877765311 111111 01 1133444455544344555667777
Q ss_pred HHhhcCCC-Cc--hhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q psy15604 687 KVLSVCSS-NK--PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA 733 (986)
Q Consensus 687 ~~Ls~~~~-~~--~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~ 733 (986)
..|..+.. .+ ..++. ..+..+..++.|.+++++..++.+++-+.+.
T Consensus 127 a~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 127 AVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 77755533 22 22221 2445555566777788888888777777643
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.57 E-value=62 Score=29.64 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=57.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhc--CCCHHHHHHHHHHHHhhccC
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISN--SNDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~~a~~~L~~ls~~ 194 (986)
++..|.+-++++++.++..|+.+|-.+..+- .....+.... ++..|+.++.. ..++.++..++..+...+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~-fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE-FLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999875 3555666543 66778898875 46889999999999888665
No 268
>KOG1566|consensus
Probab=48.23 E-value=3.6e+02 Score=28.56 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=136.1
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccC-cchhHhh---hCCchHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q psy15604 116 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE-ASRHAIM---NSPQMVAALVHAISNSND-LETTKGAVGTLHN 190 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~-~~~~~i~---~~~~~i~~Lv~lL~~~~~-~~~~~~a~~~L~~ 190 (986)
.+..+|....|+..+...+-+.+..+..+..++-... ..|...+ ... .+.+-.++..-.+ +++...+-..|..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~--~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN--PEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC--HHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 4567889999999999999888888888888876433 2332222 111 1333333333333 6677777777777
Q ss_pred hccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCc----HHHHHHHhccCCHHHHHH
Q psy15604 191 LSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGG----LQKMVLLLGRNNVKFLAI 266 (986)
Q Consensus 191 ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~----i~~L~~ll~~~~~~~~~~ 266 (986)
-.+++.-.+.+....-........+.+.=++...|..+...+...+......+..... .+.--.++.+.+--....
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 7777777788888888888888888888888888988888888555433333333332 223455667777777778
Q ss_pred HHHHHHHHhccChhh---HHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCC
Q psy15604 267 VTDCLQILAYGNQES---KLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 323 (986)
Q Consensus 267 a~~aL~~La~~~~~~---~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~ 323 (986)
+...|+.+-.+.+.. ...+.+...+..+..+|+.++.. ++..|....+.....+..
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskn-iQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKN-IQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcccc-chHHHHHHHHHHhcCCCC
Confidence 888888876533322 22333346678888889887765 666677777776655544
No 269
>KOG1243|consensus
Probab=48.19 E-value=68 Score=37.48 Aligned_cols=146 Identities=10% Similarity=-0.022 Sum_probs=88.4
Q ss_pred HHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCC
Q psy15604 616 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 695 (986)
Q Consensus 616 ~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~ 695 (986)
.+.+.+|.|++++++.+..++-....-+-+... .-...+++....+.+..-+.+.+ ..+++.+...+..|+..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhch
Confidence 457889999999999987776654444444432 33445666678888888888887 55777777777777654221
Q ss_pred chhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 696 KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 696 ~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
+ .+.-..+..+.++-.+.+..++.+..-||+.++..-.......-+.-.+.+-++++-..-|..+.+.++
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 1 222234555555555566789999999999888432111111122233333444444455555555554
No 270
>KOG1566|consensus
Probab=47.40 E-value=3.7e+02 Score=28.47 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=131.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-----chhhhcccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-----RHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~l~~~~~~i~~L~~lL~~~~-~~~~~~~a~~~L~~ls~ 565 (986)
++..+.++..+..-+-+.+..++.+..++-+..-+ ..-+...+..+..|+.- -. .+++...+...|.....
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~mlrEcir 154 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNMLRECIR 154 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHHHHHHh
Confidence 67788899988888888888888888888655432 22333334445544443 22 36776666666666666
Q ss_pred CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCc----HHHHHHhhcCCCHhHHHHHHH
Q psy15604 566 HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGG----LQKMVLLLGRNNVKFLAIVTD 641 (986)
Q Consensus 566 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~----v~~Lv~ll~~~~~~v~~~a~~ 641 (986)
++.-.+.+..+..........+.+.=++...|..+...+.......-......+- .+.--.++.+.+--..+.+..
T Consensus 155 he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k 234 (342)
T KOG1566|consen 155 HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK 234 (342)
T ss_pred hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence 6666667777777888777888777788888888877776544322222222221 222445778888888889999
Q ss_pred HHHHHhcCCcc---cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCch
Q psy15604 642 CLQILAYGNQE---SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP 697 (986)
Q Consensus 642 aL~~L~~~~~~---~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~ 697 (986)
.+..+-.+.+. ....+.++.....+..+|+++. ..++-.+..+.+.....+.-.+
T Consensus 235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAnpnK~q 292 (342)
T KOG1566|consen 235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVANPNKPQ 292 (342)
T ss_pred hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcCCCCCc
Confidence 99988776432 2233445566778888888876 5555667777777766654333
No 271
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=47.07 E-value=1.3e+02 Score=25.89 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=49.4
Q ss_pred hhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHH
Q psy15604 529 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYA 597 (986)
Q Consensus 529 ~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a 597 (986)
.+......+..|+..+...+. ..+..+...|..+..++.....+.+-|+.+.|-++-..-++..+...
T Consensus 24 dl~~~~~Ll~~LleWFnf~~~-~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 24 DLVKERLLLKQLLEWFNFPPV-PMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred HHccHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 333334677788888876644 47888888999999999898999999999987776555555554443
No 272
>KOG2933|consensus
Probab=46.22 E-value=70 Score=33.51 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=89.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccchh
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLL 571 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~ 571 (986)
++...++.|.+.|.+....++..++.++.... .....+. .++..+++-+++- ...+-+.|+.++..+... .+...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888899999999999998876554 2333332 3455555555443 456778888888887652 22221
Q ss_pred hhhccCChHHHHH-hcCCC---CHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 572 AIFKSGGIPALVK-LLSSP---VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 572 ~i~~~~~i~~Lv~-lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
. .+..++. ||... +.-+++.|-.+|..+..+..+ ..+++.|...+.+.++.+...++.+..+..
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1 3344443 44332 234788888999988865442 334566777788889999888877666554
Q ss_pred c
Q psy15604 648 Y 648 (986)
Q Consensus 648 ~ 648 (986)
.
T Consensus 234 ~ 234 (334)
T KOG2933|consen 234 I 234 (334)
T ss_pred e
Confidence 3
No 273
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=45.73 E-value=2.3e+02 Score=27.70 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~ 565 (986)
++.++++..+++..++..|+..+.-..+.. ++.-...+|.++.+..+ +++.++..|...+..+..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qG-----LvnP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQG-----LVNPKQCVPTLIALETS-PNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CCChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHH
Confidence 677888888999999999999998776643 22223578999986654 689999999999999866
No 274
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=45.52 E-value=30 Score=24.22 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=29.0
Q ss_pred HHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHH
Q psy15604 726 TLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGV 765 (986)
Q Consensus 726 ~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~ 765 (986)
+|..+.+..+.......+...+...+.++++.+|+.|...
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4555666556666666777888888888888888877654
No 275
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.12 E-value=1.6e+02 Score=27.18 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=55.8
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCCCHH---HHHHHHHHHHhhccC
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLE---TTKGAVGTLHNLSHH 194 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~---~~~~a~~~L~~ls~~ 194 (986)
++..|.+-|+++++.++..|+.+|-.+..+- ..+..+... .++..|..++.+..... +++.++..|...+..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999875 556666665 47889999887655544 898888888776543
No 276
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=44.28 E-value=3.6e+02 Score=29.40 Aligned_cols=214 Identities=16% Similarity=0.087 Sum_probs=104.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHH
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 614 (986)
.++..+..++.++.++......+.++..-...- ..-+....+..+.+=+++..+.+|..-+..++...+...+....
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 566677777766666666666665655443211 01112334556666667777778888888888888622211111
Q ss_pred HHHhCcHHHHHHhhcC----CCHhHH---HHHHHHHHHHhcCC-cccH------HHHHhCCChHHHH--HHHhc-CChhH
Q psy15604 615 VRLAGGLQKMVLLLGR----NNVKFL---AIVTDCLQILAYGN-QESK------LIILASQGPVELV--RIMRS-YDYEK 677 (986)
Q Consensus 615 v~~~g~v~~Lv~ll~~----~~~~v~---~~a~~aL~~L~~~~-~~~~------~~~~~~~~~~~L~--~ll~~-~~~~~ 677 (986)
-.-...++.|++.++. +.+..+ ..++.++..+.... +... ..+.-..-+..|+ +++.. .+.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d 178 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEED 178 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhH
Confidence 1123567777777743 222211 11222222211110 0000 0000000011111 12222 33333
Q ss_pred HHHHHHHHHHHhhcCCCCc--hhHHhcCcHHHHHHhhCCC--CHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhcc
Q psy15604 678 LLWCTSRVLKVLSVCSSNK--PAIVEAGGMQALAMHLGHP--SQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLAS 753 (986)
Q Consensus 678 ~~~~~~~~L~~Ls~~~~~~--~~l~~~g~~~~L~~ll~~~--~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~ 753 (986)
.. ..++++..+....... ... ....-+.++.++.++ +..+|+.|+.+++.+....... ....++..+-+++.+
T Consensus 179 ~~-w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 179 LC-WLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLSS 255 (339)
T ss_pred HH-HHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHh
Confidence 43 3345555554432211 111 223556777778777 7899999999998887444332 334566666666654
Q ss_pred C
Q psy15604 754 Q 754 (986)
Q Consensus 754 ~ 754 (986)
.
T Consensus 256 ~ 256 (339)
T PF12074_consen 256 S 256 (339)
T ss_pred c
Confidence 3
No 277
>KOG1788|consensus
Probab=44.16 E-value=6.8e+02 Score=31.22 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=61.6
Q ss_pred chHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc---cCCHHHHHHHHHHHHH
Q psy15604 197 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG---RNNVKFLAIVTDCLQI 273 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~a~~aL~~ 273 (986)
.++.++..|++..+++.+-...+.++..-+..+..++..++.++......|.++.|+.++. +.+......+...+..
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 4578899999999999998888999999999999999999989988888899999888773 2344444444444443
Q ss_pred H
Q psy15604 274 L 274 (986)
Q Consensus 274 L 274 (986)
|
T Consensus 980 L 980 (2799)
T KOG1788|consen 980 L 980 (2799)
T ss_pred H
Confidence 3
No 278
>KOG1949|consensus
Probab=44.11 E-value=3.5e+02 Score=31.96 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=91.4
Q ss_pred HHHHhcCCChhhHHHHHhHHHHHHHhcCCCcch----hHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc--Ccch
Q psy15604 82 LIKLLNDEDQDDADLATRAIPELIKLLNDEDQD----DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK--EASR 155 (986)
Q Consensus 82 l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~----~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~--~~~~ 155 (986)
|.+-|+..+.+++..|+..+..++-+ .+++.. +.++ ..-...|.++|+++-+.+|..|..-+++.... .-.-
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 34445677788888777766555442 233332 1222 23356789999999999999998777765532 1111
Q ss_pred hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHh
Q psy15604 156 HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 233 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 233 (986)
..+... .+..+..=+...+..++|-.....|-.+..+|.....+-. ++|.+-..|.+....++..+...|..+=
T Consensus 257 ~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 111111 1233333334334557888888888888888877665533 6677777778888889988888887665
No 279
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=41.88 E-value=3.5e+02 Score=26.51 Aligned_cols=146 Identities=15% Similarity=0.051 Sum_probs=82.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHH
Q psy15604 536 MVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614 (986)
Q Consensus 536 ~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 614 (986)
.++.++++..+ .+..++..|...+.-+.. .--+. ..++|.++.|..++++.++..|...+..+....+..-..
T Consensus 9 yl~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLS-SDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556665444 378888888888777754 11111 236899999999999999999999999998766653222
Q ss_pred HHHhCcHHHHHHhh---cCCCH-hH---HHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCC-------hhHHHH
Q psy15604 615 VRLAGGLQKMVLLL---GRNNV-KF---LAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD-------YEKLLW 680 (986)
Q Consensus 615 v~~~g~v~~Lv~ll---~~~~~-~v---~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~-------~~~~~~ 680 (986)
-... |+..-.+.- ..+.. .. ......-+..+.+++...+..++. .|++.+.... ...-..
T Consensus 83 ~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHH
Confidence 2212 233322222 11111 11 344455566666655555555543 4555554321 122233
Q ss_pred HHHHHHHHhhcCC
Q psy15604 681 CTSRVLKVLSVCS 693 (986)
Q Consensus 681 ~~~~~L~~Ls~~~ 693 (986)
-...+..||+.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 4445555665544
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=41.60 E-value=1e+02 Score=28.30 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=54.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHHHhcCChHH-HHHHHHHHHHHhh
Q psy15604 248 GLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVRIMRSYDYEK-LLWCTSRVLKVLS 318 (986)
Q Consensus 248 ~i~~L~~ll~~~~~~~~~~a~~aL~~La~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~-~~~~a~~aL~~Ls 318 (986)
++..|.+-|.+.++.++..+...|-.+..+ .......+.+.+.+..|.+++..+...+ ++..++..+...+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 456677778888999999888888888763 4557778888889999999998876544 7777777766555
No 281
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=41.42 E-value=82 Score=29.34 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=57.6
Q ss_pred ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhc
Q psy15604 578 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 578 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~ 648 (986)
++..|.+-|.+.++.++..|+..|-.+..+... ....+.....+..|+.++.. .++.|+..+...+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999987664 67777788888899999887 688888888877776654
No 282
>KOG4464|consensus
Probab=41.39 E-value=5.2e+02 Score=28.46 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=88.3
Q ss_pred HHHHHccCC-HHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHh---------cCCCHHHHHHHHHHHHhhccC-
Q psy15604 126 LIKLLNDED-QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS---------NSNDLETTKGAVGTLHNLSHH- 194 (986)
Q Consensus 126 L~~ll~~~~-~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~---------~~~~~~~~~~a~~~L~~ls~~- 194 (986)
++..|..+- ...+..++..+.-|+.+...-+.+.... ....|+.+-. ...|..+...+..+|+|+-.+
T Consensus 50 i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q-~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 50 IFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQ-LCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHhcCCCchhhhhHHHHHHHHhccccccccccchH-HHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 444454444 4455566677777776654444333322 1244444321 123557888899999999888
Q ss_pred ccchHHHHhcCChHHHHHhhCC-----CCHhHHHHHHHHHHHHhcCCCCch-HHHHHcCcHHHHHHHhcc---------C
Q psy15604 195 RQGLLAIFKSGGIPALVKLLSS-----PVESVLFYAITTLHNLLLHQEGSK-MAVRLAGGLQKMVLLLGR---------N 259 (986)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~-~~i~~~g~i~~L~~ll~~---------~ 259 (986)
+..+....+......+.+.+.. ...++...-++.|.-+..-..+.| +.+.+.+|++.+-+.+.+ .
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 5677777777777766665532 123455566666655554444455 446778999999999854 1
Q ss_pred ---CHHHHHHHHHHHHHH
Q psy15604 260 ---NVKFLAIVTDCLQIL 274 (986)
Q Consensus 260 ---~~~~~~~a~~aL~~L 274 (986)
++.....++++|..+
T Consensus 209 ~~l~pqe~n~a~EaLK~~ 226 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVF 226 (532)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 124444566666555
No 283
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=41.28 E-value=1.4e+02 Score=27.63 Aligned_cols=72 Identities=10% Similarity=-0.029 Sum_probs=54.8
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHHHhc-----CChHHHHHHHHHHHHHhhh
Q psy15604 248 GLQKMVLLLGRNNVKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRS-----YDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 248 ~i~~L~~ll~~~~~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~ll~~-----~~~~~~~~~a~~aL~~Ls~ 319 (986)
++..|.+-+.+.++.++..|...|-.+.. .....+..+.+.+.+..|++++.. ..+..++..++..+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677888888999999888888888865 334577888888999999999964 2345688888777766653
No 284
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=41.24 E-value=4.7e+02 Score=28.11 Aligned_cols=138 Identities=16% Similarity=0.131 Sum_probs=76.6
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHhhccC-ccchHHHHhc-----------CChHHHHHhhC------CCCHhHHH
Q psy15604 165 VAALVHAISNS---NDLETTKGAVGTLHNLSHH-RQGLLAIFKS-----------GGIPALVKLLS------SPVESVLF 223 (986)
Q Consensus 165 i~~Lv~lL~~~---~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~-----------g~i~~Lv~lL~------~~~~~~~~ 223 (986)
+..|+.++-.. ..-+.|.+|+.++.....+ ++.+..+++. .....|...|- ..++.-..
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 45555544332 2567888888888877665 7777766651 11223444443 33454556
Q ss_pred HHHHHHHHHhcCCCCchHHHHHc-------C-----cHHHHHHHhcc-----CCHHHHHHHHHHHHHHhccChhhHHHHH
Q psy15604 224 YAITTLHNLLLHQEGSKMAVRLA-------G-----GLQKMVLLLGR-----NNVKFLAIVTDCLQILAYGNQESKLIIL 286 (986)
Q Consensus 224 ~a~~~L~~L~~~~~~~~~~i~~~-------g-----~i~~L~~ll~~-----~~~~~~~~a~~aL~~La~~~~~~~~~~~ 286 (986)
.|+.+|.++..+++..|....+- | .++.+..+|.. .+++++..-...|..--.+++.....+.
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL 195 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFL 195 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 78899999997777666554321 1 25556666643 2344444444444444457888888887
Q ss_pred hCC-CHHHHHHHHhcCC
Q psy15604 287 ASQ-GPVELVRIMRSYD 302 (986)
Q Consensus 287 ~~g-~v~~L~~ll~~~~ 302 (986)
..+ .++.|+......+
T Consensus 196 ~~~s~l~~Li~~~~~~~ 212 (312)
T PF04869_consen 196 SEGSNLQSLIEFSNQSS 212 (312)
T ss_dssp CSTTHHHHHHHHHS--T
T ss_pred cCcchHHHHHHHhhcCC
Confidence 775 6788888754433
No 285
>KOG1992|consensus
Probab=40.68 E-value=7.5e+02 Score=30.07 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=33.4
Q ss_pred CCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccc
Q psy15604 370 NEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKIN 433 (986)
Q Consensus 370 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~ 433 (986)
+++|.++..+-++|..+... .|-.-.+++++..++.+.....++++..-++...+
T Consensus 16 ~pdps~rk~aEr~L~~~e~q---------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~ 70 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ---------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN 70 (960)
T ss_pred CCCCccCchHHHHHHHhccC---------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhc
Confidence 44566676777777665432 24455677888877766666666666555555433
No 286
>KOG0301|consensus
Probab=35.69 E-value=6.5e+02 Score=29.69 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHhhhccccchhhhcc---cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhcc--CC
Q psy15604 504 DEDQVVVSQAAMMVHQLSKKEASRHAIMNS---PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKS--GG 578 (986)
Q Consensus 504 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~---~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~--~~ 578 (986)
.-..+.+.-|+.+|+-+..+...-..+... ..++..++..+. .++..+..++++|.|+-.++.++.-+... -.
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 345666777888888887776643333321 134444444443 35778889999999998876666555432 22
Q ss_pred hHHHHHhcCCCCHhHHHHHHHHHHHhhcC--CCCChHHHHHhCcHHHHHHhhcC---C--CHhHHHHHHHHHHHHhcCCc
Q psy15604 579 IPALVKLLSSPVESVLFYAITTLHNLLLH--QEGSKMAVRLAGGLQKMVLLLGR---N--NVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 579 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~v~~~g~v~~Lv~ll~~---~--~~~v~~~a~~aL~~L~~~~~ 651 (986)
+..+++.-..++..++...+....|.+.- .... +.++.+.+...+.. + +.+-.-....||.+|+.. +
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~-~ 706 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV-D 706 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc-c
Confidence 23333332333445554444444443321 1111 24555554444432 1 222233345567777775 3
Q ss_pred ccHHHHHhCCChHHHHHHHhcC
Q psy15604 652 ESKLIILASQGPVELVRIMRSY 673 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~ 673 (986)
.....+...-.+..+.+-++..
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHHh
Confidence 3444444444555666555543
No 287
>KOG2676|consensus
Probab=35.56 E-value=50 Score=34.95 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHh--ccCCHHHHHHHHHHHHHHhccChhhHHHHHh
Q psy15604 224 YAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL--GRNNVKFLAIVTDCLQILAYGNQESKLIILA 287 (986)
Q Consensus 224 ~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~ 287 (986)
+..+.|+++|+.+++.+..+.+.||++.++.-- ++.+|-+.+....|+..|-.++.+++..+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 477899999999999999999999999888765 4466888899999999999888888876643
No 288
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.72 E-value=1.2e+02 Score=28.04 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=53.9
Q ss_pred ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcC------CCHhHHHHHHHHHHHHh
Q psy15604 578 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGR------NNVKFLAIVTDCLQILA 647 (986)
Q Consensus 578 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~------~~~~v~~~a~~aL~~L~ 647 (986)
++..+.+-|+++++.++..|+..|-.+..+... ....+...+.+..|++++.. .++.|+..+...+..-.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677778899999999999999998877644 67778878888889998853 35677777766665544
No 289
>KOG1410|consensus
Probab=34.56 E-value=8.4e+02 Score=28.85 Aligned_cols=263 Identities=14% Similarity=0.108 Sum_probs=140.7
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 496 PELIK-LLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 496 ~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
+.+.+ +-.+.|+..+..|-.+|..++..+ +.+...--++..+..|--+..|+.+|..+...........
T Consensus 8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~sp----------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 8 ESLCKDLYESTDPTARHRAEKALAELSESP----------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence 34444 335678999999999998887665 4556665666666677788888888888876333222222
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhh----cC--CCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLL----LH--QEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~----~~--~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
+-..-..++++|..+.|+.....+.+|..+. .. .+..++...-.+.+.-+.+.++.++.+--..+...|..|..
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvq 157 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQ 157 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 3333456777777766655544444443332 11 11223333335667777888887776666666677777765
Q ss_pred C-------CcccHHH-----HHhCCCh---HHHHHHHhcCC-----hh---HHHHHHHHH-HHHhh------cC------
Q psy15604 649 G-------NQESKLI-----ILASQGP---VELVRIMRSYD-----YE---KLLWCTSRV-LKVLS------VC------ 692 (986)
Q Consensus 649 ~-------~~~~~~~-----~~~~~~~---~~L~~ll~~~~-----~~---~~~~~~~~~-L~~Ls------~~------ 692 (986)
+ .|..+.. +.+.... ..-+.+|+... ++ .+.+.+... +..+. ..
T Consensus 158 emN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed 237 (1082)
T KOG1410|consen 158 EMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSED 237 (1082)
T ss_pred HhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccccc
Confidence 2 1222211 1111111 11112232211 11 122221111 11110 00
Q ss_pred ------CCC-chhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-------cccchhchHHHHHHHhccC----
Q psy15604 693 ------SSN-KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-------KVDGLESLLQSLVQLLASQ---- 754 (986)
Q Consensus 693 ------~~~-~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~-------~~~~~~~~l~~L~~ll~~~---- 754 (986)
|.. +..+.+...++...++..+-.+..-..++.||-.+++... +......+++-...++..+
T Consensus 238 ~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~Ls 317 (1082)
T KOG1410|consen 238 LCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLS 317 (1082)
T ss_pred ccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCC
Confidence 111 1334445567777777777667777778888887774332 2222234445555555543
Q ss_pred ChhhHHHHHHHHhh
Q psy15604 755 DINVITCAAGVTVC 768 (986)
Q Consensus 755 ~~~i~~~a~~~L~n 768 (986)
|+.--.+=|+.|+.
T Consensus 318 D~~nyHeFCRllaR 331 (1082)
T KOG1410|consen 318 DPANYHEFCRLLAR 331 (1082)
T ss_pred CcchHHHHHHHHHH
Confidence 77777777888775
No 290
>KOG4464|consensus
Probab=34.17 E-value=2.6e+02 Score=30.60 Aligned_cols=135 Identities=17% Similarity=0.116 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhh--C--------CCCHhHHHHHHHHHHHHhcC
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLL--S--------SPVESVLFYAITTLHNLLLH 235 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL--~--------~~~~~~~~~a~~~L~~L~~~ 235 (986)
..+++.|.++.....+..++.++.=|+.+...-+-+....-+..|..+. + .++..+...+..+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 4455666665566677777777777777644333332222233333332 1 12456889999999999988
Q ss_pred CCCchHHHHHcCcHHHHHHHhcc----CCHH-HHHHHHHHHHHHhccChhhHHH-HHhCCCHHHHHHHHhc
Q psy15604 236 QEGSKMAVRLAGGLQKMVLLLGR----NNVK-FLAIVTDCLQILAYGNQESKLI-ILASQGPVELVRIMRS 300 (986)
Q Consensus 236 ~~~~~~~i~~~g~i~~L~~ll~~----~~~~-~~~~a~~aL~~La~~~~~~~~~-~~~~g~v~~L~~ll~~ 300 (986)
+...+....+......+++.+.. +.+. ....=...|.-|..-..+.|.. +.+.+|++.+-+.+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 88788877777776666666633 1111 1111122232232223345543 4566777777766654
No 291
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.66 E-value=1.9e+02 Score=26.71 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=55.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHH---HHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLE---TTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~---~~~~a~~~L~~ls~ 565 (986)
..++..|.+-+.+.++.++..|+..|-.+..+-. ..+.-+.+..++..|..++....... ++..+...+...+.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4457778888999999999999999999988764 33333333588889999886554544 78888877777654
No 292
>KOG1848|consensus
Probab=32.06 E-value=7.7e+02 Score=31.96 Aligned_cols=305 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc--chhhhcccCcHHHHHHhh-cCCCCHHHHHHHHHHHHHhhCCccc
Q psy15604 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS--RHAIMNSPQMVAALVHAI-SNSNDLETTKGAVGTLHNLSHHRQG 569 (986)
Q Consensus 493 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~l~~~~~~i~~L~~lL-~~~~~~~~~~~a~~~L~~ls~~~~~ 569 (986)
.+.+++......--...+..+..++.+.+..+.. .....++.+.+-....+. -.....+++.....++.++-..+-.
T Consensus 796 naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge 875 (1610)
T KOG1848|consen 796 NAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE 875 (1610)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch
Q ss_pred hhhhhccCChHHHHHhcCCC---CHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC-CHhHHHHHHHHHHH
Q psy15604 570 LLAIFKSGGIPALVKLLSSP---VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQI 645 (986)
Q Consensus 570 ~~~i~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~ 645 (986)
.-.=--...++.+-...... ..++.+.+...|+-++.|.-..-..-.-.+.+..+...-+.. +..+--.|...+++
T Consensus 876 ~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWt 955 (1610)
T KOG1848|consen 876 HLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWT 955 (1610)
T ss_pred hhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Q ss_pred HhcCCcccHHHHHhCCChHHHHHHHhcC-ChhHHHHHHHHH--HHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHH
Q psy15604 646 LAYGNQESKLIILASQGPVELVRIMRSY-DYEKLLWCTSRV--LKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQN 722 (986)
Q Consensus 646 L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~~~~~--L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 722 (986)
++..-...+...-+.+--...++.+.+. ........+.|. +.+|+.+-++...-++.|+++.+.+.+++....+..+
T Consensus 956 vsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~ 1035 (1610)
T KOG1848|consen 956 VSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTN 1035 (1610)
T ss_pred HHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChh
Q ss_pred H-HHHHHHhhcccccccchhchHHHHHHHhc-------cC--ChhhHHH----HHHHHhhhccCcHHHHHHHHhcCCccc
Q psy15604 723 C-LWTLRNLSDAGTKVDGLESLLQSLVQLLA-------SQ--DINVITC----AAGVTVCQVGGVEALVQTIVNAGDREE 788 (986)
Q Consensus 723 a-l~~L~nLs~~~~~~~~~~~~l~~L~~ll~-------~~--~~~i~~~----a~~~L~ni~~g~~~~v~~l~~~~~~~~ 788 (986)
| --|+. ..++.++. ++ .+.+++. .|-+|+
T Consensus 1036 aW~s~~w----------------~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltis--------------------- 1078 (1610)
T KOG1848|consen 1036 AWASCCW----------------LVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTIS--------------------- 1078 (1610)
T ss_pred HHHHHHH----------------HHHHHHhccccccchhhhcchhHhhhhhhhhhhhHH---------------------
Q ss_pred ccccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHh
Q psy15604 789 ITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVN 868 (986)
Q Consensus 789 ~~e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~ 868 (986)
||.++. +.+...+....|.-.-|+.+++
T Consensus 1079 ------------------------------------------gIaklf----------~e~fk~llnln~f~~vwe~ll~ 1106 (1610)
T KOG1848|consen 1079 ------------------------------------------GIAKLF----------SENFKLLLNLNGFLDVWEELLQ 1106 (1610)
T ss_pred ------------------------------------------HHHHHH----------HHHHHHHHhcccHHHHHHHHHH
Q ss_pred c------CCchhhHHHHHHHHHHh
Q psy15604 869 A------GDREEITEPAVCALRHL 886 (986)
Q Consensus 869 ~------~~~~~v~e~a~~~l~~l 886 (986)
. ..++++.-.++..+|.+
T Consensus 1107 flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1107 FLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHhcCChHhHHHHHHHHHHH
No 293
>KOG0413|consensus
Probab=31.57 E-value=1.8e+02 Score=35.53 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhc-ccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHH
Q psy15604 134 DQVVVSQAAMMVHQLS-KKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVK 212 (986)
Q Consensus 134 ~~~~~~~a~~~L~~la-~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~ 212 (986)
.+.++.++..+|++|+ .++...... +|.|++-|...++..+|-....+++.+|.+-.....- .||.+..
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~------~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~----YiP~I~~ 1013 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRL------MPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDR----YIPMIAA 1013 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHH----hhHHHHH
Q ss_pred hhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy15604 213 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQIL 274 (986)
Q Consensus 213 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~L 274 (986)
.|.++++-++..++..|.+|.+..--.+.-.. +-.++.-+-+.+++++..+-.++..+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~L----f~Rf~l~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWNGEL----FIRFMLALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhcchhh----HHHHHHHHcccCHHHHHHHHHHHHHH
No 294
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.36 E-value=8.9e+02 Score=28.17 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=74.8
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
|.+..+++.+.+++..++......|+.+.. .-......+..|.+..|.+-+-+..+.+|..|+.+|+.+-..+.+.+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d---~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSD---VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 678888888899998888876665555544 22333455667777778777777889999999999998776554433
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR 195 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~ 195 (986)
-. ....|+.++++.++.++|+.|+ .|++.++
T Consensus 168 n~-----~~n~l~~~vqnDPS~EVRr~al---lni~vdn 198 (885)
T COG5218 168 NR-----IVNLLKDIVQNDPSDEVRRLAL---LNISVDN 198 (885)
T ss_pred HH-----HHHHHHHHHhcCcHHHHHHHHH---HHeeeCC
Confidence 22 2345667777767788998765 4554443
No 295
>KOG1822|consensus
Probab=31.30 E-value=9.3e+02 Score=32.49 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=98.9
Q ss_pred CCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC-CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHH
Q psy15604 589 PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELV 667 (986)
Q Consensus 589 ~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~ 667 (986)
.++-.|.--..+++.+-.+....-..-....++..|..+.+++ .|.|+..+..++..+.....+.....+.. ...-..
T Consensus 928 ~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~ 1006 (2067)
T KOG1822|consen 928 RDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCL 1006 (2067)
T ss_pred CCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHH
Confidence 3444444445556666555443222111234566777776665 56899888888887776543333222222 232333
Q ss_pred HHHhcCC--hhHHHHHHHHHHH------HhhcC--CCC-------chhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15604 668 RIMRSYD--YEKLLWCTSRVLK------VLSVC--SSN-------KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 668 ~ll~~~~--~~~~~~~~~~~L~------~Ls~~--~~~-------~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nL 730 (986)
.++.+.. ..++...-.+.+. .+..+ ++. ...-++.-.+-...-++.++++.++..+..|+-++
T Consensus 1007 ~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqql 1086 (2067)
T KOG1822|consen 1007 KLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQL 1086 (2067)
T ss_pred HHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 3333221 1222222222222 23221 111 11112222233333455677888999999999999
Q ss_pred hcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCc
Q psy15604 731 SDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGV 773 (986)
Q Consensus 731 s~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~ 773 (986)
--...+....+-++..+..++.+...-.|..+..++.-+.-+.
T Consensus 1087 hlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1087 HLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred HhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 8666667778889999999888776666666666655444333
No 296
>KOG2038|consensus
Probab=30.34 E-value=1.8e+02 Score=34.54 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=69.0
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLII 285 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~ 285 (986)
.|+.|..+-..+-+.++..++.++++|..+.++.. ...+..++.-|++.+.++...|...|..|.+.+|..+..+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 56677776677778899999999999996665333 3346778888888888888889999999988888776544
Q ss_pred HhCCCHHHHHHHHhcCCh-HHHHHHHHHHH
Q psy15604 286 LASQGPVELVRIMRSYDY-EKLLWCTSRVL 314 (986)
Q Consensus 286 ~~~g~v~~L~~ll~~~~~-~~~~~~a~~aL 314 (986)
+..+.+++-.++. ...++.+...|
T Consensus 380 -----i~EIer~~FRpn~~~ra~Yyav~fL 404 (988)
T KOG2038|consen 380 -----IDEIERLAFRPNVSERAHYYAVIFL 404 (988)
T ss_pred -----HHHHHHHHcccCccccceeehhhhh
Confidence 3555555554433 32334443333
No 297
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.97 E-value=7.5e+02 Score=26.87 Aligned_cols=186 Identities=13% Similarity=0.023 Sum_probs=94.8
Q ss_pred ChHHHHHhc-CCCCHhHHHHHHHHHHHhhcCC-CCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc-ccH
Q psy15604 578 GIPALVKLL-SSPVESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ-ESK 654 (986)
Q Consensus 578 ~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~-~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~-~~~ 654 (986)
.+..+..++ +..++......+.++..-+... .+.. ..++..+.+-+++..+.+++.-..++....+..+ ...
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~-----~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP-----KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 345555555 4467777777777776655433 1111 2334555566666666688877777777766111 112
Q ss_pred HHHHhCCChHHHHHHHhc----CChhHHHHHHHHHHHHhh--cCCCC----------------c-hhHHhcCcHHHHHHh
Q psy15604 655 LIILASQGPVELVRIMRS----YDYEKLLWCTSRVLKVLS--VCSSN----------------K-PAIVEAGGMQALAMH 711 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~----~~~~~~~~~~~~~L~~Ls--~~~~~----------------~-~~l~~~g~~~~L~~l 711 (986)
..+.. ...+.|.+.++. +-..........+...++ ..... + ..+... +.
T Consensus 98 ~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------kv 169 (339)
T PF12074_consen 98 LKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------KV 169 (339)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------HH
Confidence 22332 356667666642 211100011111212222 10000 0 001110 11
Q ss_pred hCC-CCHHHHHHHHHHHHHhhcccccccc---hhchHHHHHHHhccC--ChhhHHHHHHHHhhhccCcHHH
Q psy15604 712 LGH-PSQRLVQNCLWTLRNLSDAGTKVDG---LESLLQSLVQLLASQ--DINVITCAAGVTVCQVGGVEAL 776 (986)
Q Consensus 712 l~~-~~~~v~~~al~~L~nLs~~~~~~~~---~~~~l~~L~~ll~~~--~~~i~~~a~~~L~ni~~g~~~~ 776 (986)
... .+++-....++++..+......... ...+-..++.++-++ ...+|+.|..++..+.+.++..
T Consensus 170 yskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 170 YSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 111 2344444555666555533222111 346778888888888 8899999999999887777763
No 298
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=29.31 E-value=4.9e+02 Score=25.35 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
++.+.+-|+. .+..-+-.|......|... ...+-.=+-...|.++-+.|++.++++...++.+|..|+..++..-.++
T Consensus 40 Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aL 118 (183)
T PF10274_consen 40 LPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEAL 118 (183)
T ss_pred HHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Q ss_pred HHcCcHHHHHHHhc---------------cCCHHHHHHHHHHHHHH
Q psy15604 244 RLAGGLQKMVLLLG---------------RNNVKFLAIVTDCLQIL 274 (986)
Q Consensus 244 ~~~g~i~~L~~ll~---------------~~~~~~~~~a~~aL~~L 274 (986)
.-. .+.|+..+. .....+......+|..|
T Consensus 119 vPy--yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~l 162 (183)
T PF10274_consen 119 VPY--YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELL 162 (183)
T ss_pred HHH--HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHH
No 299
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=28.92 E-value=3.5e+02 Score=30.00 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred cCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC---C--------CHhHHHHHHHHHHHHhcCCcccH
Q psy15604 586 LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR---N--------NVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 586 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~---~--------~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
|...+.+-+..|-..|.+.....++..+...-..-++.+++.++. . +.++...|..+|..+.+. ++.-
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Q ss_pred HHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCC-----CCHHHHHHHHHHHHH
Q psy15604 655 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH-----PSQRLVQNCLWTLRN 729 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~-----~~~~v~~~al~~L~n 729 (986)
..+-+......+-..+..-..+..-+..+...-.+-........++....+..++..+.. ++..+....+.++++
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q ss_pred hh-cccccccchhc-hHHHHHHHhccCChhhHHHHHHHH
Q psy15604 730 LS-DAGTKVDGLES-LLQSLVQLLASQDINVITCAAGVT 766 (986)
Q Consensus 730 Ls-~~~~~~~~~~~-~l~~L~~ll~~~~~~i~~~a~~~L 766 (986)
+. ..+..|....+ .++.++..+-+....++..|..++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~ 199 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLL 199 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
No 300
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=28.71 E-value=1.2e+02 Score=28.06 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 594 LFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 594 ~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
+..|+..|+.|.+... +.+|+++|.++++.+...++.+|.+-..
T Consensus 80 ~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN-----------VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SSTT-----------HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCCc-----------HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 4556666666663332 6788888888888888888888876443
No 301
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=27.32 E-value=1.1e+02 Score=18.84 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhhccCcHHHHHHHHh
Q psy15604 758 VITCAAGVTVCQVGGVEALVQTIVN 782 (986)
Q Consensus 758 i~~~a~~~L~ni~~g~~~~v~~l~~ 782 (986)
+|..|+++|+++ |.+..+..|+.
T Consensus 1 VR~~Aa~aLg~i--gd~~ai~~L~~ 23 (27)
T PF03130_consen 1 VRRAAARALGQI--GDPRAIPALIE 23 (27)
T ss_dssp HHHHHHHHHGGG---SHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCHHHHHHHHH
Confidence 467888888866 55666666654
No 302
>KOG2038|consensus
Probab=27.21 E-value=4e+02 Score=31.82 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=58.7
Q ss_pred cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHH
Q psy15604 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKL 655 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~ 655 (986)
...|+.|..+...+-+.++..++.++++|....++.- ...+..+|.-|.+++.++-..|...|.+|...+|..+.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 3466777777788888999999999999997766432 33456778888888888888888888888887766554
Q ss_pred HH
Q psy15604 656 II 657 (986)
Q Consensus 656 ~~ 657 (986)
.+
T Consensus 378 Vv 379 (988)
T KOG2038|consen 378 VV 379 (988)
T ss_pred eh
Confidence 43
No 303
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=27.15 E-value=1.6e+02 Score=27.36 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=16.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHH
Q psy15604 249 LQKMVLLLGRNNVKFLAIVTDCLQIL 274 (986)
Q Consensus 249 i~~L~~ll~~~~~~~~~~a~~aL~~L 274 (986)
|++|+.+|.++++.+...++.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 77778888777777777777777644
No 304
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.98 E-value=1.5e+02 Score=29.60 Aligned_cols=104 Identities=12% Similarity=0.093 Sum_probs=46.7
Q ss_pred cchHHHHhcCChHHHHHhhCCC---C---------------HhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc
Q psy15604 196 QGLLAIFKSGGIPALVKLLSSP---V---------------ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG 257 (986)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~lL~~~---~---------------~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 257 (986)
..+..+.+.|++..++.+|..+ . .++...+...|..++.++..++..+.+. ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 4555666678888887777421 1 2466788999999998887777766543 333333333
Q ss_pred cCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCC
Q psy15604 258 RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD 302 (986)
Q Consensus 258 ~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~ 302 (986)
......-..+..++..+..++++....+.+.. +..++.++....
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g 155 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG 155 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC
Confidence 32222223456777788888887877765555 888998888743
No 305
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=26.85 E-value=5.7e+02 Score=27.93 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=65.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-----C-CHHHHHHHHHHHHhhccCccch
Q psy15604 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-----N-DLETTKGAVGTLHNLSHHRQGL 198 (986)
Q Consensus 125 ~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-----~-~~~~~~~a~~~L~~ls~~~~~~ 198 (986)
.++..+.+.+...+.. +|..|..++.... ++|.++..+... . +.......+.++..|..++...
T Consensus 182 ~It~a~~~~~~~~r~~---aL~sL~tD~gl~~-------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 182 EITEALVGSNEEKRRE---ALQSLRTDPGLQQ-------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHhCCCHHHHHH---HHHHhccCCCchh-------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 3455555555555554 4666777765532 456666665432 2 5667777888888888887655
Q ss_pred HHHHhcCChHHHHHhhCC----------CCHhHHHHHHHHHHHHhcCC
Q psy15604 199 LAIFKSGGIPALVKLLSS----------PVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 199 ~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~L~~~~ 236 (986)
-...=.-.+|.++.++-+ .+..+|..|+..|..++...
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f 299 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF 299 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHc
Confidence 444434478888877721 23468999999999999543
No 306
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=26.21 E-value=1e+02 Score=19.35 Aligned_cols=25 Identities=28% Similarity=0.066 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhhhccCcHHHHHHHHhc
Q psy15604 757 NVITCAAGVTVCQVGGVEALVQTIVNA 783 (986)
Q Consensus 757 ~i~~~a~~~L~ni~~g~~~~v~~l~~~ 783 (986)
.+|..|+++|+++ |.++.+..|++.
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~~~L~~~ 26 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAVPALIKA 26 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHHHHHHHH
Confidence 4678889999877 777777776654
No 307
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=26.19 E-value=6.3e+02 Score=28.72 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccC--ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc
Q psy15604 180 TTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG 257 (986)
Q Consensus 180 ~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 257 (986)
.|..|+.+|+.++.. .+....+++. .|+.+|+++...-+..++.+|..-+...........-....+.|..+|.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCH----------------------------------------------
Q psy15604 258 RNNVKFLAIVTDCLQILAYGNQESKLIILASQGP---------------------------------------------- 291 (986)
Q Consensus 258 ~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v---------------------------------------------- 291 (986)
.+++.........+..+-.+-...-..+.+.|.+
T Consensus 179 ~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~ 258 (441)
T PF12054_consen 179 NPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPS 258 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCc
Q ss_pred -------------------HHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHH
Q psy15604 292 -------------------VELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 352 (986)
Q Consensus 292 -------------------~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~ 352 (986)
-.-.+..+...+-.+....+.|+..+..-+..-..+ |..|+.-++.
T Consensus 259 ~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPi-----IrpLMdSIK~---------- 323 (441)
T PF12054_consen 259 QKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPI-----IRPLMDSIKR---------- 323 (441)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHH-----HHHHHHHhhc----------
Q ss_pred HHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhH
Q psy15604 353 WTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416 (986)
Q Consensus 353 ~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~ 416 (986)
.+++.+|..++.+|..|-.--..++.--...++.-|+.++-.+...+
T Consensus 324 -----------------Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seT 370 (441)
T PF12054_consen 324 -----------------EENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSET 370 (441)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccC
No 308
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.75 E-value=3.4e+02 Score=22.65 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=41.3
Q ss_pred CCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHH--HHHHHhhhhcccc
Q psy15604 870 GDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAV--IGLIRNLALCQAN 938 (986)
Q Consensus 870 ~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~--~~~l~nl~~~~~~ 938 (986)
.++++..+.++.+|+.+..+.......|.+.. +.+-.|.+.+ .++.+|++ ++.|--.+-||.-
T Consensus 9 ~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~-----~a~e~L~~e~-e~p~vRaAtaIsiLeeisnDPNm 73 (93)
T COG1698 9 NDSEEKINQVMQLLDEIIQDTTVPRNIRRAAE-----EAKEALNNEG-ESPAVRAATAISILEEISNDPNM 73 (93)
T ss_pred hhhHHHHHHHHHHHHHHHccccccHHHHHHHH-----HHHHHHhCCC-CCchhHHHHHHHHHHHHhcCCCC
Confidence 46678888999999998877744444555554 3444444444 66666644 7788888777643
No 309
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.66 E-value=1.7e+02 Score=25.97 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=0.0
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHH---------cCcHHHHHHHhccC
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL---------AGGLQKMVLLLGRN 259 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~---------~g~i~~L~~ll~~~ 259 (986)
+|+.|++-|.++++++...|...|...| .++.+-..+.. .-|-+.++.+++.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c-~~~~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~ 70 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEAC-EDKEYLEYLVSLRPSLDHLGDIGSPLLLRFLSTP 70 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-hchhhHHHHHHcCcHHHHHHHcCHHHHHHHHcch
No 310
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.07 E-value=6.1e+02 Score=26.76 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=48.7
Q ss_pred ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCCh-HHHHHhCcHHHHHH----hhc--------CCCHhHHHHHHHHHH
Q psy15604 578 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK-MAVRLAGGLQKMVL----LLG--------RNNVKFLAIVTDCLQ 644 (986)
Q Consensus 578 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~v~~~g~v~~Lv~----ll~--------~~~~~v~~~a~~aL~ 644 (986)
.+|.++.++.+.++.++..++.+|.++....+... ..+.+.|..+.+-+ ++. .++..+...+--|+.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 57999999999999999999999999997665433 33555665443332 232 234556666666666
Q ss_pred HHhc
Q psy15604 645 ILAY 648 (986)
Q Consensus 645 ~L~~ 648 (986)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 6644
No 311
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.56 E-value=6.2e+02 Score=28.47 Aligned_cols=192 Identities=14% Similarity=0.002 Sum_probs=96.0
Q ss_pred hhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhc
Q psy15604 570 LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 570 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~ 648 (986)
.+..++...+..|+.++.++|+.-|......|.++-....+.|..++ ......+.+.+.. ........+.+.+..+..
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 34455667788999999999999999999999999888888888886 4455566666654 344555566666777666
Q ss_pred CCc-ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHh-hcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 649 GNQ-ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL-SVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 649 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~L-s~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
+-. +.+..... -....++.+.+.............++... ..++..... .+..|+++--..++.=..-.+.-
T Consensus 205 gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 205 GFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp T--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHH
T ss_pred ccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHH
Confidence 532 22221111 01112222333332222111112222211 111111111 22223332222232222222333
Q ss_pred HHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhh
Q psy15604 727 LRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVC 768 (986)
Q Consensus 727 L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~n 768 (986)
+..+.+... -......+...+...++|++..+.+.|+....|
T Consensus 279 l~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 333332211 112233556667777889999999888887763
No 312
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.91 E-value=1.6e+03 Score=30.01 Aligned_cols=250 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhcCCChhHHh-hHHHHHHHhhcChhh------HHHHHhcCCcHHHHHHHHhhhcCCCccccccccccccc
Q psy15604 2 EMVAALVHAISNSNDLETTK-GAVGTLHNLSHHRQG------LLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADL 74 (986)
Q Consensus 2 ~~~~~lv~~l~~~~d~~~~~-~a~~~L~~l~~~~~~------~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~ 74 (986)
|++.+.+.-+....+..+-. ..+-.++........ |..|..+-.-..+++-+-. ....++++
T Consensus 363 eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~-------~~~~vL~~---- 431 (1426)
T PF14631_consen 363 EAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFK-------GHSEVLKD---- 431 (1426)
T ss_dssp HHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHH-------HHHHHHTT----
T ss_pred HHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHh-------hhHHHHHH----
Q ss_pred ccCcHHHHHHHh----cCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcc
Q psy15604 75 ATRAIPELIKLL----NDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK 150 (986)
Q Consensus 75 ~~g~i~~l~~ll----~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~ 150 (986)
.++.++.+. .+.+...+..+......++. ..+.+.....+..|+..+.+++..-...|..+|..|+.
T Consensus 432 ---~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~------~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 432 ---YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFK------EFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp ---SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH------SS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh------hccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Q ss_pred cCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHH----HHH
Q psy15604 151 KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLF----YAI 226 (986)
Q Consensus 151 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~----~a~ 226 (986)
. ....+.....++..+++.+.. =+..-.+....+|+.++........-+....--.+-..|+++++..+. -|+
T Consensus 503 ~--~~~~l~~fa~~l~giLD~l~~-Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav 579 (1426)
T PF14631_consen 503 K--NPSELQPFATFLKGILDYLDN-LSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAV 579 (1426)
T ss_dssp H---HHHHHHTHHHHHGGGGGGGG---HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHH
Q ss_pred HHHHHHhcCCCCchHHHHHcCcHHH--------HHHHhcc---CCHHHHHHHHHHHHHH
Q psy15604 227 TTLHNLLLHQEGSKMAVRLAGGLQK--------MVLLLGR---NNVKFLAIVTDCLQIL 274 (986)
Q Consensus 227 ~~L~~L~~~~~~~~~~i~~~g~i~~--------L~~ll~~---~~~~~~~~a~~aL~~L 274 (986)
..+..++...........+.+-++. |+.++.+ .+|...+.-..=|+++
T Consensus 580 ~~i~~la~~~~~~~~~~~~~~~l~~~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~l 638 (1426)
T PF14631_consen 580 MMIKHLAAKNSESDSSSSERSNLSDEQCKQATSLLELVQSSSEQSPEALALFYDELANL 638 (1426)
T ss_dssp HHHHHTT------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 313
>KOG1788|consensus
Probab=23.83 E-value=1.5e+03 Score=28.44 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=63.5
Q ss_pred chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhc---CCCHhHHHHHHHHHHH
Q psy15604 569 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG---RNNVKFLAIVTDCLQI 645 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~---~~~~~v~~~a~~aL~~ 645 (986)
....|+.+|++..+++.+-...++++..-+..+..+++.++.........|.++.|++++. +.+..++..+...+..
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 3567888999999999888888999999999999999999989988888899998877653 3444555666666666
Q ss_pred Hhc
Q psy15604 646 LAY 648 (986)
Q Consensus 646 L~~ 648 (986)
|+.
T Consensus 980 Lga 982 (2799)
T KOG1788|consen 980 LGA 982 (2799)
T ss_pred Hhh
Confidence 654
No 314
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.71 E-value=1.1e+03 Score=26.90 Aligned_cols=246 Identities=15% Similarity=0.084 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHh
Q psy15604 506 DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKL 585 (986)
Q Consensus 506 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~l 585 (986)
..+.|..+...+..+............ ..+...+.....++.-..-..+|..|+.+-... ..++.+..|.|...
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMR-----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSW 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHH
Confidence 467888888888888777654211111 123333433333332333344455555422222 12455666666555
Q ss_pred cCC---------------------------CCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-CCHhHHH
Q psy15604 586 LSS---------------------------PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLA 637 (986)
Q Consensus 586 L~~---------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~~~~v~~ 637 (986)
+.. .+.......+..+.|+...+...-+.-.-.+.+..++.+-.. .++....
T Consensus 116 l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~ 195 (464)
T PF11864_consen 116 LEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIE 195 (464)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 421 122334455556666666654422211224666666665433 4455556
Q ss_pred HHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhC--C-
Q psy15604 638 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG--H- 714 (986)
Q Consensus 638 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~--~- 714 (986)
.+...+-.+.....-+...+. ..+..|..+... ......+..++.||....... .++..|+..|. +
T Consensus 196 ~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~---~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~~~~~ 264 (464)
T PF11864_consen 196 ACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNS---VSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILRSPDP 264 (464)
T ss_pred HHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhcc---cccchhHHHHHHHHHcCccHH------HHHHHHHHHHcccCc
Confidence 666666555432211111111 123344433222 245566777888887543322 24566777773 2
Q ss_pred ---CCHHHHHHHHHHHHHhhccc--cccc--chhc--hHHHHHHHhccCChhhHHHHHHHHhh
Q psy15604 715 ---PSQRLVQNCLWTLRNLSDAG--TKVD--GLES--LLQSLVQLLASQDINVITCAAGVTVC 768 (986)
Q Consensus 715 ---~~~~v~~~al~~L~nLs~~~--~~~~--~~~~--~l~~L~~ll~~~~~~i~~~a~~~L~n 768 (986)
.+..+.+.|+..++.+.... ..+. .... +++.+...++..++-+--+....+.+
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence 34678888999999887443 2232 2334 88999998988777666555555543
No 315
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.63 E-value=9.2e+02 Score=25.41 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=48.5
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCch-HHHHHcCcHHHHHH----Hhc--------cCCHHHHHHHHHHHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK-MAVRLAGGLQKMVL----LLG--------RNNVKFLAIVTDCLQ 272 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-~~i~~~g~i~~L~~----ll~--------~~~~~~~~~a~~aL~ 272 (986)
.+|+++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-. ++. .++..+...+-.++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999995443222 23566675444333 332 233556667777777
Q ss_pred HHhc
Q psy15604 273 ILAY 276 (986)
Q Consensus 273 ~La~ 276 (986)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 316
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=22.62 E-value=4.6e+02 Score=29.00 Aligned_cols=129 Identities=16% Similarity=0.038 Sum_probs=67.3
Q ss_pred CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHh----cC-ChhHHHHHHHHHHHHhhcCCCCc----------
Q psy15604 632 NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMR----SY-DYEKLLWCTSRVLKVLSVCSSNK---------- 696 (986)
Q Consensus 632 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~----~~-~~~~~~~~~~~~L~~Ls~~~~~~---------- 696 (986)
...-++.|+..++.|+...+..-..++ ...+..++. ++ .+-.....+...+..|+......
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 345577888888888864222111121 122333333 22 22344566777777776554321
Q ss_pred ---hhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHH
Q psy15604 697 ---PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVT 766 (986)
Q Consensus 697 ---~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L 766 (986)
..+...-+++-|. --.+..|-++..|++.+....+.-++ ....++++.+++++++++.-+...|+.+|
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1111122222222 00123466777777777665543322 23348999999999999999999999875
No 317
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.60 E-value=3.8e+02 Score=22.31 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhh----CCCCHhHHHHHHHHHHHH
Q psy15604 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLL----SSPVESVLFYAITTLHNL 232 (986)
Q Consensus 164 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~L 232 (986)
++.++..++.+..+.++|+..+.++.++ -.++..-...| .+++...+ .++++++...|..++..+
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qi---l~~~~~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQI---LQSRGENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHH---HHHhHHHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHhhC
No 318
>KOG1822|consensus
Probab=22.31 E-value=1.9e+03 Score=29.97 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccch-hhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAI 573 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~-~~i 573 (986)
+..++..+..+++..+..+..+++.++.......-+ ....+.+++-+.+..++-.+.--.-+++.+=....+. ..-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~---a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFV---ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 334445556678888888888888887665432211 1345566666766666665554444444442211110 000
Q ss_pred hccCChHHHHHhcCCCC-HhHHHHHHHHHHHhhcCCCCCh
Q psy15604 574 FKSGGIPALVKLLSSPV-ESVLFYAITTLHNLLLHQEGSK 612 (986)
Q Consensus 574 ~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~ 612 (986)
.-..++..+..+-+++. +.|+..++.++.-+.....+..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~ 994 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF 994 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee
Confidence 01234566677766654 5999999999998886655544
No 319
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=21.51 E-value=1.1e+03 Score=25.80 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC-------CHhHHHHHHHHHHHHhcCCC
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP-------VESVLFYAITTLHNLLLHQE 237 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~ 237 (986)
+..+.+.+.. ++...+..| |..|..++.-+. .+|-++.++... +-....+..+.+..|. .++
T Consensus 180 f~~It~a~~~-~~~~~r~~a---L~sL~tD~gl~~------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~ 248 (343)
T cd08050 180 FEEITEALVG-SNEEKRREA---LQSLRTDPGLQQ------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNP 248 (343)
T ss_pred HHHHHHHHhC-CCHHHHHHH---HHHhccCCCchh------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCC
Confidence 4555555554 455555544 555655654443 456666666432 4556667777788888 666
Q ss_pred CchHHHHHcCcHHHHHHHhcc----------CCHHHHHHHHHHHHHHhc
Q psy15604 238 GSKMAVRLAGGLQKMVLLLGR----------NNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 238 ~~~~~i~~~g~i~~L~~ll~~----------~~~~~~~~a~~aL~~La~ 276 (986)
...-...-...+|.++.++-. ++..++..++..+..++.
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 655444334578888877722 224677788888877764
No 320
>PRK04330 hypothetical protein; Provisional
Probab=20.64 E-value=5.1e+02 Score=21.68 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=40.7
Q ss_pred CCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHH--HHHHHHhhhhcccc
Q psy15604 870 GDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKA--VIGLIRNLALCQAN 938 (986)
Q Consensus 870 ~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~--~~~~l~nl~~~~~~ 938 (986)
.+++++.+.+...|.++..+..-..-+|.+.. ...-.|.+.+ ..+-+|+ +++.|--++-||.-
T Consensus 5 ~~~e~~ik~~~~~L~~I~~D~sVPRNIRraa~-----ea~~~L~~e~-~~~~vRaA~AIs~LdeIs~DPNm 69 (88)
T PRK04330 5 YDNEEKIKQAIQMLEEIINDTSVPRNIRRAAT-----EAKEILLNEE-ESPGVRAATAISILDEISNDPNM 69 (88)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCChHHHHHHH-----HHHHHHhCcC-cchhHHHHHHHHHHHHhhcCCCC
Confidence 46678889999999999887744444555554 3333444443 5566664 47778777777543
Done!