Query psy15604
Match_columns 986
No_of_seqs 480 out of 3434
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 16:57:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 1.2E-43 4E-48 416.4 47.9 674 13-934 18-782 (810)
2 1jdh_A Beta-catenin; beta-cate 100.0 3.1E-40 1.1E-44 388.8 44.8 501 117-731 13-529 (529)
3 3now_A UNC-45 protein, SD10334 100.0 4.2E-39 1.4E-43 377.9 52.8 659 166-957 9-761 (810)
4 2z6g_A B-catenin; FULL-length, 100.0 2.9E-40 9.9E-45 401.2 44.4 556 77-755 115-686 (780)
5 2z6h_A Catenin beta-1, beta-ca 100.0 6.8E-40 2.3E-44 392.9 46.1 526 116-755 9-550 (644)
6 2z6g_A B-catenin; FULL-length, 100.0 6.5E-37 2.2E-41 371.7 38.3 475 437-984 94-568 (780)
7 2z6h_A Catenin beta-1, beta-ca 100.0 7.5E-37 2.6E-41 366.5 38.4 509 159-777 11-533 (644)
8 1jdh_A Beta-catenin; beta-cate 100.0 2.7E-36 9.3E-41 355.2 37.0 413 480-965 4-416 (529)
9 3ul1_B Importin subunit alpha- 100.0 2.5E-37 8.6E-42 358.4 22.5 391 493-890 57-480 (510)
10 3tpo_A Importin subunit alpha- 100.0 2.3E-36 7.9E-41 352.7 23.6 392 492-890 75-499 (529)
11 3l6x_A Catenin delta-1; cateni 100.0 7.4E-33 2.5E-37 314.7 35.4 421 201-704 44-489 (584)
12 3ul1_B Importin subunit alpha- 100.0 1.1E-31 3.8E-36 311.0 36.6 406 165-730 59-476 (510)
13 1xm9_A Plakophilin 1; armadill 100.0 2E-31 7E-36 303.7 35.0 423 206-696 3-454 (457)
14 3tpo_A Importin subunit alpha- 100.0 1E-30 3.4E-35 305.1 37.8 405 165-729 78-494 (529)
15 3l6x_A Catenin delta-1; cateni 100.0 1E-30 3.5E-35 297.1 30.1 406 44-580 27-491 (584)
16 4b8j_A Importin subunit alpha- 100.0 5.3E-30 1.8E-34 300.6 35.5 392 492-964 73-485 (528)
17 3nmz_A APC variant protein; pr 100.0 3.2E-30 1.1E-34 287.3 30.0 362 165-651 34-453 (458)
18 4b8j_A Importin subunit alpha- 100.0 5.8E-29 2E-33 291.7 40.1 404 165-692 76-497 (528)
19 3nmz_A APC variant protein; pr 100.0 2.3E-30 7.9E-35 288.4 26.3 376 206-696 33-455 (458)
20 1wa5_B Importin alpha subunit; 100.0 2.5E-29 8.6E-34 294.6 34.1 394 492-965 86-500 (530)
21 1xm9_A Plakophilin 1; armadill 100.0 2.4E-29 8.4E-34 286.5 30.9 366 122-609 3-452 (457)
22 1wa5_B Importin alpha subunit; 100.0 7.4E-28 2.5E-32 282.1 42.8 404 203-772 85-511 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 3.9E-28 1.3E-32 279.2 35.0 392 495-966 22-434 (450)
24 2jdq_A Importin alpha-1 subuni 100.0 5E-27 1.7E-31 269.9 35.5 402 165-692 22-444 (450)
25 3nmw_A APC variant protein; AR 99.9 1.1E-27 3.8E-32 259.4 15.2 272 506-778 45-341 (354)
26 3nmw_A APC variant protein; AR 99.9 6.5E-27 2.2E-31 253.3 18.6 267 551-892 47-338 (354)
27 3opb_A SWI5-dependent HO expre 99.9 1.1E-22 3.8E-27 233.4 38.4 451 139-648 230-728 (778)
28 3opb_A SWI5-dependent HO expre 99.9 1.4E-22 4.9E-27 232.4 30.0 473 4-631 257-759 (778)
29 4hxt_A De novo protein OR329; 99.9 4.8E-22 1.6E-26 208.6 22.3 240 493-735 2-244 (252)
30 4hxt_A De novo protein OR329; 99.9 2.7E-21 9.4E-26 202.8 23.7 241 77-322 2-244 (252)
31 4db8_A Armadillo-repeat protei 99.9 1.4E-21 4.6E-26 205.1 19.8 237 493-732 12-251 (252)
32 4db8_A Armadillo-repeat protei 99.9 3.1E-21 1.1E-25 202.3 21.2 238 77-319 12-251 (252)
33 3tt9_A Plakophilin-2; cell adh 99.9 2.5E-21 8.4E-26 194.0 13.6 198 577-787 8-231 (233)
34 4fdd_A Transportin-1; heat rep 99.8 2E-18 6.7E-23 214.3 39.5 615 88-777 59-748 (852)
35 1xqr_A HSPBP1 protein; armadil 99.8 4E-20 1.4E-24 194.5 16.3 184 549-733 53-239 (296)
36 1b3u_A Protein (protein phosph 99.8 1.2E-17 4.1E-22 198.8 40.0 575 78-769 11-585 (588)
37 4db6_A Armadillo repeat protei 99.8 1E-19 3.5E-24 184.8 18.4 197 534-732 11-209 (210)
38 1b3u_A Protein (protein phosph 99.8 7.8E-17 2.7E-21 191.8 40.4 532 123-769 12-546 (588)
39 4db6_A Armadillo repeat protei 99.8 1.1E-18 3.8E-23 177.1 20.5 199 118-319 9-209 (210)
40 4fdd_A Transportin-1; heat rep 99.8 4.1E-17 1.4E-21 202.4 38.3 579 131-769 23-697 (852)
41 3tt9_A Plakophilin-2; cell adh 99.8 5E-19 1.7E-23 177.2 15.4 195 78-276 9-229 (233)
42 1xqr_A HSPBP1 protein; armadil 99.8 7.6E-18 2.6E-22 177.2 22.0 188 97-285 57-247 (296)
43 2bpt_A Importin beta-1 subunit 99.7 5.6E-14 1.9E-18 175.2 47.1 624 78-771 96-811 (861)
44 1qgr_A Protein (importin beta 99.7 2.1E-14 7.3E-19 179.4 40.4 666 79-770 92-870 (876)
45 1qgr_A Protein (importin beta 99.7 9.1E-14 3.1E-18 173.7 44.5 565 124-753 93-745 (876)
46 2bpt_A Importin beta-1 subunit 99.7 1.9E-13 6.3E-18 170.5 45.0 616 78-768 135-854 (861)
47 2vgl_B AP-2 complex subunit be 99.7 1.2E-13 4.2E-18 162.5 37.1 469 78-649 50-533 (591)
48 1u6g_C TIP120 protein, CAND1; 99.7 1.8E-12 6.2E-17 167.4 50.8 691 3-775 49-889 (1230)
49 3grl_A General vesicular trans 99.7 5.4E-13 1.8E-17 149.2 38.3 315 77-424 21-389 (651)
50 2vgl_B AP-2 complex subunit be 99.6 3.5E-13 1.2E-17 158.7 38.7 509 77-767 13-528 (591)
51 3grl_A General vesicular trans 99.6 6.3E-13 2.2E-17 148.7 36.7 442 122-672 22-528 (651)
52 1u6g_C TIP120 protein, CAND1; 99.6 9.7E-13 3.3E-17 169.9 39.4 637 78-774 7-724 (1230)
53 1w63_A Adapter-related protein 99.5 2E-11 6.8E-16 144.1 40.6 514 79-767 36-573 (618)
54 1w63_A Adapter-related protein 99.5 3.3E-11 1.1E-15 142.2 35.7 467 78-648 71-577 (618)
55 1oyz_A Hypothetical protein YI 99.3 1.4E-10 4.8E-15 122.9 24.8 226 492-769 22-248 (280)
56 1oyz_A Hypothetical protein YI 99.3 4E-10 1.4E-14 119.4 25.9 223 494-768 55-279 (280)
57 2vgl_A Adaptor protein complex 99.3 3.4E-08 1.2E-12 116.0 42.5 486 120-767 73-585 (621)
58 3ltm_A Alpha-REP4; protein eng 99.2 5.3E-10 1.8E-14 112.7 20.8 188 534-773 18-205 (211)
59 3ltj_A Alpharep-4; protein eng 99.2 1.1E-09 3.7E-14 109.5 20.0 183 535-769 14-196 (201)
60 2vgl_A Adaptor protein complex 99.1 1.5E-08 5E-13 119.1 30.7 470 78-649 75-590 (621)
61 3ltm_A Alpha-REP4; protein eng 99.1 1.3E-09 4.4E-14 109.9 18.7 187 492-733 18-204 (211)
62 1ibr_B P95, importin beta-1 su 99.1 7.4E-09 2.5E-13 118.5 26.9 273 493-771 128-437 (462)
63 3ltj_A Alpharep-4; protein eng 99.1 3.4E-09 1.2E-13 105.8 18.8 185 492-731 13-197 (201)
64 1ibr_B P95, importin beta-1 su 99.0 1.9E-08 6.6E-13 115.0 22.9 380 176-649 13-438 (462)
65 4gmo_A Putative uncharacterize 98.9 1.1E-07 3.7E-12 113.3 25.7 193 122-318 35-257 (684)
66 4ady_A RPN2, 26S proteasome re 98.7 0.0014 4.8E-08 77.7 52.4 241 495-772 474-720 (963)
67 4gmo_A Putative uncharacterize 98.5 2.1E-07 7.3E-12 110.7 10.6 194 493-690 34-257 (684)
68 3b2a_A TON_1937, putative unch 98.4 6.5E-06 2.2E-10 78.7 15.7 184 577-769 33-216 (265)
69 1ho8_A Vacuolar ATP synthase s 98.4 6.4E-05 2.2E-09 81.4 24.7 353 162-607 76-477 (480)
70 4ady_A RPN2, 26S proteasome re 98.2 0.00071 2.4E-08 80.2 30.3 311 206-648 393-719 (963)
71 1wa5_C Importin alpha RE-expor 98.2 0.029 9.8E-07 69.8 46.0 256 501-771 463-748 (960)
72 3b2a_A TON_1937, putative unch 98.1 0.00031 1.1E-08 67.4 20.5 217 535-764 33-254 (265)
73 1wa5_C Importin alpha RE-expor 98.1 0.018 6.1E-07 71.7 40.9 251 507-768 375-667 (960)
74 1ho8_A Vacuolar ATP synthase s 98.0 0.00029 1E-08 76.3 20.7 307 3-317 78-474 (480)
75 3tjz_B Coatomer subunit gamma; 98.0 0.00014 4.9E-09 77.2 17.5 285 100-418 47-342 (355)
76 2x19_B Importin-13; nuclear tr 97.9 0.077 2.6E-06 66.1 44.1 276 489-770 525-845 (963)
77 2qk2_A LP04448P; mini spindles 97.9 8.6E-05 2.9E-09 76.0 13.8 185 496-691 18-205 (242)
78 2x1g_F Cadmus; transport prote 97.9 0.04 1.4E-06 68.8 40.4 257 495-768 548-855 (971)
79 2qk2_A LP04448P; mini spindles 97.9 0.00014 4.8E-09 74.3 14.8 182 124-319 18-205 (242)
80 1te4_A Conserved protein MTH18 97.9 1.8E-06 6.2E-11 78.8 0.4 118 577-728 12-129 (131)
81 1te4_A Conserved protein MTH18 97.9 4.8E-06 1.6E-10 76.0 2.5 121 618-769 11-131 (131)
82 3tjz_B Coatomer subunit gamma; 97.8 0.00031 1.1E-08 74.6 15.6 254 495-778 70-323 (355)
83 2qk1_A Protein STU2; STU2P, XM 97.5 0.0012 4.1E-08 67.3 14.8 192 126-319 21-220 (249)
84 2x1g_F Cadmus; transport prote 97.5 0.016 5.4E-07 72.4 28.0 167 593-772 437-616 (971)
85 4hat_C Exportin-1; heat repeat 97.5 0.12 4E-06 63.9 34.6 140 631-772 465-619 (1023)
86 2qk1_A Protein STU2; STU2P, XM 97.5 0.001 3.6E-08 67.7 13.6 193 497-691 20-220 (249)
87 2db0_A 253AA long hypothetical 97.5 0.023 7.9E-07 52.1 20.0 214 492-731 31-245 (253)
88 3ibv_A Exportin-T; karyopherin 97.4 0.26 8.9E-06 60.7 36.0 218 9-276 14-260 (980)
89 2db0_A 253AA long hypothetical 97.4 0.033 1.1E-06 51.1 20.1 179 203-396 30-219 (253)
90 3dad_A FH1/FH2 domain-containi 97.4 0.0037 1.3E-07 64.3 15.8 156 78-237 119-289 (339)
91 3m1i_C Exportin-1; heat repeat 97.3 0.3 1E-05 61.3 35.8 133 127-275 22-165 (1049)
92 3dad_A FH1/FH2 domain-containi 97.2 0.01 3.5E-07 61.1 16.8 174 166-342 121-316 (339)
93 2x19_B Importin-13; nuclear tr 97.0 1.4 4.7E-05 54.7 38.1 137 629-773 459-601 (963)
94 2iw3_A Elongation factor 3A; a 96.7 0.17 6E-06 60.9 24.2 343 166-609 17-382 (986)
95 3gjx_A Exportin-1; transport, 96.4 3.2 0.00011 51.1 34.1 217 123-388 30-275 (1073)
96 3oc3_A Helicase MOT1, MOT1; re 96.3 0.095 3.3E-06 57.2 16.5 242 494-766 175-431 (800)
97 2iw3_A Elongation factor 3A; a 96.3 0.11 3.8E-06 62.6 19.0 262 495-775 16-284 (986)
98 3m1i_C Exportin-1; heat repeat 96.1 3.7 0.00013 51.3 32.7 138 631-769 465-616 (1049)
99 1dow_B Beta-catenin; four-heli 95.8 0.0018 6.1E-08 39.2 0.3 30 461-490 2-31 (32)
100 3ibv_A Exportin-T; karyopherin 95.5 4.7 0.00016 49.5 29.4 119 170-302 14-141 (980)
101 3ebb_A Phospholipase A2-activa 94.8 0.21 7.2E-06 51.7 12.2 187 123-310 105-297 (304)
102 2fv2_A RCD1 required for cell 94.4 1.3 4.6E-05 43.4 15.8 200 177-397 14-233 (268)
103 3oc3_A Helicase MOT1, MOT1; re 94.4 0.35 1.2E-05 52.9 12.6 159 179-359 243-403 (800)
104 4hat_C Exportin-1; heat repeat 93.6 18 0.00063 44.4 37.8 179 88-276 60-263 (1023)
105 4ffb_C Protein STU2; tubulin f 93.4 1.6 5.5E-05 44.8 15.9 182 579-767 12-208 (278)
106 3ebb_A Phospholipase A2-activa 93.4 0.4 1.4E-05 49.6 11.0 141 508-650 117-265 (304)
107 4ffb_C Protein STU2; tubulin f 93.2 1.9 6.5E-05 44.2 16.0 188 82-276 14-212 (278)
108 2of3_A ZYG-9; multifunctional 92.8 3.1 0.00011 41.8 16.0 177 495-689 48-234 (266)
109 1lrv_A LRV, leucine-rich repea 92.1 0.27 9.2E-06 49.2 7.2 184 338-642 57-240 (244)
110 2of3_A ZYG-9; multifunctional 91.7 3.4 0.00012 41.5 14.7 171 580-767 49-232 (266)
111 3l9t_A Putative uncharacterize 90.2 2.8 9.4E-05 40.9 11.9 136 498-654 76-213 (240)
112 2fv2_A RCD1 required for cell 90.0 10 0.00035 37.3 15.5 176 378-604 75-266 (268)
113 1lrv_A LRV, leucine-rich repea 89.7 0.18 6E-06 50.5 3.3 61 546-641 84-144 (244)
114 1upk_A MO25 protein; transfera 88.9 23 0.00079 36.4 18.2 203 492-699 77-291 (341)
115 1upk_A MO25 protein; transfera 88.6 23 0.00078 36.5 17.8 207 116-327 73-291 (341)
116 3c2g_A SYS-1 protein; beta-cat 85.9 10 0.00035 38.6 13.0 125 107-233 270-402 (619)
117 3u0r_A Apoptosis inhibitor 5; 85.2 9.1 0.00031 41.4 13.1 119 132-271 39-158 (507)
118 3u0r_A Apoptosis inhibitor 5; 84.4 50 0.0017 35.8 20.4 118 176-314 40-158 (507)
119 2f31_A Diaphanous protein homo 83.3 18 0.0006 35.7 13.9 131 506-638 67-218 (233)
120 3l9t_A Putative uncharacterize 83.0 13 0.00046 36.1 12.2 144 622-783 74-219 (240)
121 3eg5_B Protein diaphanous homo 82.9 19 0.00065 38.5 14.8 131 505-637 132-283 (383)
122 2f31_A Diaphanous protein homo 81.9 15 0.0005 36.3 12.6 137 203-339 41-207 (233)
123 1lsh_A Lipovitellin (LV-1N, LV 81.6 35 0.0012 42.2 18.6 128 706-935 443-577 (1056)
124 3eg5_B Protein diaphanous homo 80.4 23 0.0008 37.8 14.4 182 78-264 67-282 (383)
125 3c2g_A SYS-1 protein; beta-cat 80.3 12 0.0004 38.2 10.9 115 556-672 263-378 (619)
126 1lsh_A Lipovitellin (LV-1N, LV 75.8 46 0.0016 41.1 17.1 203 78-320 357-577 (1056)
127 2bnx_A Diaphanous protein homo 74.9 39 0.0014 36.1 14.3 131 506-638 71-222 (386)
128 2bnx_A Diaphanous protein homo 69.0 44 0.0015 35.7 13.0 129 134-264 71-220 (386)
129 3gjx_A Exportin-1; transport, 63.2 77 0.0026 39.0 15.0 218 494-733 29-276 (1073)
130 3a6p_A Exportin-5; exportin-5, 54.9 4E+02 0.014 33.3 34.7 137 90-236 109-278 (1204)
131 3o2t_A Symplekin; heat repeat, 51.1 2.5E+02 0.0084 29.7 16.3 67 576-647 62-128 (386)
132 1x5b_A Signal transducing adap 49.7 24 0.00082 32.3 5.7 71 122-193 53-125 (163)
133 3zyq_A Hepatocyte growth facto 48.0 40 0.0014 32.8 7.4 71 122-193 46-118 (226)
134 3qml_C Protein SLS1, nucleotid 47.4 1.3E+02 0.0043 30.6 10.7 144 124-274 25-187 (315)
135 3gae_A Protein DOA1; UFD3, CDC 45.5 24 0.00083 35.1 5.4 102 132-237 101-220 (253)
136 3qml_C Protein SLS1, nucleotid 45.4 1.2E+02 0.0041 30.7 10.2 151 78-233 23-188 (315)
137 1x5b_A Signal transducing adap 39.8 64 0.0022 29.5 6.9 74 492-565 51-125 (163)
138 3pst_A Protein DOA1; protein d 39.3 61 0.0021 34.7 7.6 102 132-236 273-391 (425)
139 3gae_A Protein DOA1; UFD3, CDC 38.2 52 0.0018 32.7 6.5 130 510-649 71-218 (253)
140 1juq_A ADP-ribosylation factor 35.9 49 0.0017 30.5 5.5 72 122-194 51-129 (171)
141 3ldz_A STAM-1, signal transduc 35.5 73 0.0025 28.2 6.4 70 122-193 43-114 (140)
142 3g2s_A C-terminal fragment of 35.0 98 0.0033 27.7 7.2 72 248-319 49-126 (149)
143 1dvp_A HRS, hepatocyte growth 34.1 47 0.0016 32.2 5.4 71 122-193 43-115 (220)
144 3l3f_X Protein DOA1, DOA1/UFD3 31.5 57 0.0019 34.2 5.7 101 132-235 210-327 (362)
145 3ldz_A STAM-1, signal transduc 31.1 2E+02 0.0067 25.4 8.5 86 477-565 28-114 (140)
146 3zyq_A Hepatocyte growth facto 28.7 89 0.003 30.3 6.3 74 492-565 44-118 (226)
147 3s4w_B Protein FACD2, fanconi 28.6 9.5E+02 0.033 30.0 21.1 136 177-319 358-507 (1323)
148 1mhq_A ADP-ribosylation factor 26.5 1.3E+02 0.0044 26.9 6.4 72 248-319 39-116 (148)
149 3pst_A Protein DOA1; protein d 26.3 1.3E+02 0.0045 32.1 7.4 102 504-608 273-391 (425)
150 1mhq_A ADP-ribosylation factor 25.8 1.6E+02 0.0055 26.2 7.0 74 492-565 37-116 (148)
151 1juq_A ADP-ribosylation factor 25.7 1.1E+02 0.0039 28.0 6.1 72 248-319 51-128 (171)
152 3g2s_A C-terminal fragment of 25.5 1.8E+02 0.0063 25.9 7.3 74 492-565 47-126 (149)
153 3gs3_A Symplekin, LD45768P; he 25.3 5E+02 0.017 25.6 16.4 66 577-647 53-118 (257)
154 1dvp_A HRS, hepatocyte growth 24.8 1.8E+02 0.0063 27.9 7.8 73 492-564 41-114 (220)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-43 Score=416.42 Aligned_cols=674 Identities=13% Similarity=0.095 Sum_probs=513.1
Q ss_pred cCCChhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHh-h-----------hc---CCC-ccccccccccccccc
Q psy15604 13 NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSK-T-----------LV---TAS-SNNTLILQDDADLAT 76 (986)
Q Consensus 13 ~~~d~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~-~-----------l~---~~~-~~~~~~~~~~~~~~~ 76 (986)
.+.+.+.|++|...|..|++++.+.+.|+++|++..+.+++++ . +. +.. .....++.+
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~------ 91 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTE------ 91 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHH------
Confidence 6778899999999999999999999999999999999999985 1 11 121 112234444
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcch------hHHHhC------CCHHHHHHHHccC--CHHHHHHHH
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQD------DADLAT------RAIPELIKLLNDE--DQVVVSQAA 142 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~------~~i~~~------g~i~~L~~ll~~~--~~~~~~~a~ 142 (986)
=+++++++++.+++.+....+...+..+.+.++..+.. ..++.. ..+..|+.++.+. +...|..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~ 171 (810)
T 3now_A 92 LGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVI 171 (810)
T ss_dssp SCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHH
Confidence 58999999999998888888888888887755533222 223221 1234466666655 467889998
Q ss_pred HHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCC----------CHHHHHHHHHHHHhhccCc--cchHHHHhcCChH
Q psy15604 143 MMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSN----------DLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIP 208 (986)
Q Consensus 143 ~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~----------~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~ 208 (986)
.+|.+-.... .....+...+| +..+++.-...+ ..+.|..|.-+|.++-.+- +..+..+..-+-.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (810)
T 3now_A 172 ELITRNVHYTALEWAERLVEIRG-LCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDE 250 (810)
T ss_dssp HHHHHHTTCTTTTHHHHHHHTTH-HHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhCCccccccccchhhHhh-HHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 8887766433 22333555566 488888665421 3468999999999986652 2222333333334
Q ss_pred HHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHH-HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHh
Q psy15604 209 ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR-LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 287 (986)
Q Consensus 209 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~ 287 (986)
.+...+..++.+-...|+.++.++..+.++....+. ..|+++.|+.++.++++.++..|++++.+.+. +++.|..+.+
T Consensus 251 ~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~-~~~~R~~I~~ 329 (810)
T 3now_A 251 YIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS-KKDKAKALCE 329 (810)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTT-SHHHHHTTHH
T ss_pred HHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CcHHHHHHHH
Confidence 555666778888889999999999988877776665 78999999999999999999999999999776 5889998888
Q ss_pred CCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCC-C-hHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccccc
Q psy15604 288 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-N-KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKV 365 (986)
Q Consensus 288 ~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~-~-~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i 365 (986)
.|+ +.|+.++++.+.. ++..++.+|+.++.... + .....+.|.+
T Consensus 330 ~gv-~~L~~Ll~s~~~~-vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i-------------------------------- 375 (810)
T 3now_A 330 QGV-DILKRLYHSKNDG-IRVRALVGLCKLGSYGGQDAAIRPFGDGAA-------------------------------- 375 (810)
T ss_dssp HHH-HHHHHHTTCSCHH-HHHHHHHHHHHHHTTTTTTTSCCSSTTTHH--------------------------------
T ss_pred cCc-HHHHHHHcCCCHH-HHHHHHHHHHHhccccccCccccchhhccH--------------------------------
Confidence 775 9999999866533 55544444444332110 0 0000000000
Q ss_pred ccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccch
Q psy15604 366 SLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETL 445 (986)
Q Consensus 366 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 445 (986)
T Consensus 376 -------------------------------------------------------------------------------- 375 (810)
T 3now_A 376 -------------------------------------------------------------------------------- 375 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhhhc
Q psy15604 446 EEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDE--DQVVVSQAAMMVHQLSKK 523 (986)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~ 523 (986)
...++.++++|.++ |++++..|+++|.+++..
T Consensus 376 ----------------------------------------------~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 376 ----------------------------------------------LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409 (810)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred ----------------------------------------------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 11155666777776 788899999999999999
Q ss_pred cccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCcc-c--------------------------------h
Q psy15604 524 EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ-G--------------------------------L 570 (986)
Q Consensus 524 ~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~-~--------------------------------~ 570 (986)
+..+..++...|++|.|+.+|++. ++.+++.++|+|.|++...+ . .
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 988888887679999999999864 78999999999999998431 1 1
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
..+++.|++|.|+.+|++++++++++|+|+|+|++.+ +++|..+.+.|++++|+.++.++++..+..|+|+|.||+.+.
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999999999999965 448999999999999999999999999999999999999752
Q ss_pred cccHHHH---HhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 651 QESKLII---LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS-SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 651 ~~~~~~~---~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~-~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
.+ ...+ ...+++++|+++|.+.........++|+|.||+.++ .++..+++.|+++.|+.++.++++.++.+|+++
T Consensus 568 ~p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~ 646 (810)
T 3now_A 568 NP-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646 (810)
T ss_dssp CH-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred Ch-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 21 1111 112589999999986543444567899999999885 567889999999999999999999999999999
Q ss_pred HHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhhH
Q psy15604 727 LRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQ 803 (986)
Q Consensus 727 L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~ 803 (986)
|+||+.... +.....|.++.|+.++++++..++++|||+|+|+++|++.+++.+++
T Consensus 647 L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~--------------------- 705 (810)
T 3now_A 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA--------------------- 705 (810)
T ss_dssp HHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT---------------------
T ss_pred HHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH---------------------
Confidence 999994333 33333689999999999999999999999999999988877765543
Q ss_pred HHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHH
Q psy15604 804 NYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCAL 883 (986)
Q Consensus 804 ~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l 883 (986)
..|+++.|. -+..+.++++++.|+.++
T Consensus 706 ---------------------------------------------------~~g~I~~Lv--~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 706 ---------------------------------------------------IASWLDILH--TLIANPSPAVQHRGIVII 732 (810)
T ss_dssp ---------------------------------------------------STTHHHHHH--HHHTCSSHHHHHHHHHHH
T ss_pred ---------------------------------------------------HcCCHHHHH--HHHCCCCHHHHHHHHHHH
Confidence 147888888 556789999999999999
Q ss_pred HHhhcCCchHHHHHHHHHhhhChHHHHHhhCCC--CCchHHHHHHHHHHhhhh
Q psy15604 884 RHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPP--SRWPLVKAVIGLIRNLAL 934 (986)
Q Consensus 884 ~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~--~~~~~~~~~~~~l~nl~~ 934 (986)
.|++.+++ +. ...+.+.+|+++|.++|+.+ .+..++..+..+|.|+-.
T Consensus 733 ~NL~~~s~--e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 733 LNMINAGE--EI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHTTCH--HH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCH--HH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 99998652 33 45666789999999999754 356699999999999843
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.1e-40 Score=388.83 Aligned_cols=501 Identities=50% Similarity=0.690 Sum_probs=422.2
Q ss_pred HHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcc
Q psy15604 117 DLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ 196 (986)
Q Consensus 117 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~ 196 (986)
....|+++.|+.+|+++++.++..|+.+|.+++.++..+..+....|.++.|+++|.++++++++..|+.+|.+++.+++
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 46788999999999999999999999999999998888888887655689999999876789999999999999999988
Q ss_pred chHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 197 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 197 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
++..+++.|++|.|+++|++++++++..|+.+|.+++.++++.+..+.+.|+++.|+.++++++++++..++.+|.+++.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777788889899999999999999999999999999999999
Q ss_pred cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHh
Q psy15604 277 GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 356 (986)
Q Consensus 277 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~ 356 (986)
++++.+..+.+.|+++.|+.++++++.+..++.+..+|++++.++.++..+.+.|+++.|+.++.+++++++..++|+|.
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 88999999999999999999999988887889999999999999888999999999999999999999999999999999
Q ss_pred ccccccc-----------ccccccCCchHHHHHHHHHHHHHhhC-hhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH
Q psy15604 357 NLSDAGT-----------KVSLLFNEIENIQRVAAGLLCELAQD-KEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424 (986)
Q Consensus 357 ~ls~~~~-----------~i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~ 424 (986)
+++...+ .+.++.+.+++++..++.+|.+++.+ ++.+..+.+.|+++.|+.++.+.+
T Consensus 253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~----------- 321 (529)
T 1jdh_A 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG----------- 321 (529)
T ss_dssp HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT-----------
T ss_pred HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC-----------
Confidence 9977543 26777888999999999999999865 467778877777777777765321
Q ss_pred HHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcC
Q psy15604 425 KIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLND 504 (986)
Q Consensus 425 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~ 504 (986)
T Consensus 322 -------------------------------------------------------------------------------- 321 (529)
T 1jdh_A 322 -------------------------------------------------------------------------------- 321 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHHHhhhccc----cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChH
Q psy15604 505 EDQVVVSQAAMMVHQLSKKEA----SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIP 580 (986)
Q Consensus 505 ~~~~~~~~a~~~L~~l~~~~~----~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~ 580 (986)
+++.++..|+.+|++++.... .+..+... |+++.|+.+|++..++.++..++|+|.|++.+++++..+.+.|++|
T Consensus 322 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~ 400 (529)
T 1jdh_A 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400 (529)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT-TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc-CChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHH
Confidence 123455566666666655422 23345553 8899999999887667999999999999999888888999999999
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhC
Q psy15604 581 ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS 660 (986)
Q Consensus 581 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 660 (986)
.|+.+|++++++++..++|++.|.+... |+ ....++..++.+|.+|+.. ++.+..+.+.
T Consensus 401 ~L~~ll~~~~~~v~~~a~~~l~n~~~~~----------~~----------~~~~i~~~~~~al~~L~~~-~~~~~~l~~~ 459 (529)
T 1jdh_A 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVE----------GV----------RMEEIVEGCTGALHILARD-VHNRIVIRGL 459 (529)
T ss_dssp HHHHHHHHHHHHHC-----------CBT----------TB----------CHHHHHHHHHHHHHHHTTS-HHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHhcccCchhhhc----------cc----------cHHHHHHHHHHHHHHHhcC-chHHHHHhcc
Confidence 9999999988999999999999944221 11 1234556788999999985 6788889999
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15604 661 QGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 661 ~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs 731 (986)
++++.|+.++.+++ +.++..++++|.+++..+..+..+.+.|+++.|..++.++++.++..|.++|.+||
T Consensus 460 ~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 460 NTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp TCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHcCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 99999999999887 67788999999999877667788899999999999999999999999999999985
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-39 Score=377.91 Aligned_cols=659 Identities=14% Similarity=0.081 Sum_probs=499.2
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCC-CCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 166 AALVHAIS-NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 166 ~~Lv~lL~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
....+++. .+.+.+.|+.|+..|.-|++.+.+.+.|++.|++..|..++++ .++++...|+++|..+|.++......+
T Consensus 9 ~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~ 88 (810)
T 3now_A 9 KQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGV 88 (810)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444443 4568899999999999999999999999999999999999998 789999999999999998776666778
Q ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc-----cChh----hHHHHHhC-----CCHHHHHHHHhcCCh-HHHHH
Q psy15604 244 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY-----GNQE----SKLIILAS-----QGPVELVRIMRSYDY-EKLLW 308 (986)
Q Consensus 244 ~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~-----~~~~----~~~~~~~~-----g~v~~L~~ll~~~~~-~~~~~ 308 (986)
...=+++.++.++.+++++....++.++..+-. ++.. ....+.+. ..+..|+.++.+... ...|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~ 168 (810)
T 3now_A 89 LTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARD 168 (810)
T ss_dssp HHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHH
Confidence 888899999999999888888888777766531 1111 01111111 234556666666543 44666
Q ss_pred HHHHHHHHhhhCCC--ChHHHHHhccHHHHHHHhCCC-----------CHHHHHHHHHHHhcccccccc-----------
Q psy15604 309 CTSRVLKVLSVCSS--NKPAIVEAGGMQALAMHLGHP-----------SQRLVQNCLWTLRNLSDAGTK----------- 364 (986)
Q Consensus 309 ~a~~aL~~Ls~~~~--~~~~i~~~g~l~~L~~ll~~~-----------~~~~~~~~~~~L~~ls~~~~~----------- 364 (986)
++...|..-....+ ....++..+|+..++...... .+..+..+..+|..+-+.-.-
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (810)
T 3now_A 169 GVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQI 248 (810)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 66666544332222 234467778999998876441 346777777777776433210
Q ss_pred ----cccccCCchHHHHHHHHHHHHHhhC-hhhHHHHH-hcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccc
Q psy15604 365 ----VSLLFNEIENIQRVAAGLLCELAQD-KEGAETIE-AEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGC 438 (986)
Q Consensus 365 ----i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~-~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 438 (986)
-..+...+.+-...|+.++.++... ++....+. ..|+++.|+.++.+.+..++..+..++... +
T Consensus 249 ~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~a--a-------- 318 (810)
T 3now_A 249 DEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAA--S-------- 318 (810)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHH--T--------
T ss_pred HHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHH--c--------
Confidence 2233355556678889999998754 46555555 889999999999999877776555444111 0
Q ss_pred cccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15604 439 LMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVH 518 (986)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 518 (986)
. . ...+..+ ...| +|.|..+++++++.++..|+.+|.
T Consensus 319 ---~---------------------------~-~~~R~~I-----------~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 319 ---S---------------------------K-KDKAKAL-----------CEQG-VDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp ---T---------------------------S-HHHHHTT-----------HHHH-HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ---C---------------------------C-cHHHHHH-----------HHcC-cHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 0 0111111 1133 599999999999999999999999
Q ss_pred Hhhhccc--cchhhhcc---cCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhCCccchhhhh-ccCChHHHHHhcCCCCH
Q psy15604 519 QLSKKEA--SRHAIMNS---PQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQGLLAIF-KSGGIPALVKLLSSPVE 591 (986)
Q Consensus 519 ~l~~~~~--~~~~l~~~---~~~i~~L~~lL~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~-~~~~i~~Lv~lL~~~~~ 591 (986)
+++.... .....+.. ..+++.|+.+|.+. .++++++.|+|+|.+|+..++.+..++ +.|++|.|+.+|+++++
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh
Confidence 9975432 22223332 13477788888765 378999999999999999888888877 58999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCC-----------------------------h---HHHHHhCcHHHHHHhhcCCCHhHHHHH
Q psy15604 592 SVLFYAITTLHNLLLHQEGS-----------------------------K---MAVRLAGGLQKMVLLLGRNNVKFLAIV 639 (986)
Q Consensus 592 ~v~~~a~~aL~nl~~~~~~~-----------------------------~---~~v~~~g~v~~Lv~ll~~~~~~v~~~a 639 (986)
.++..++|+|.|++.+.+.. + +.+.+.|++|.|+.+++++++.++..+
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~A 515 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELI 515 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999865311 2 567789999999999999999999999
Q ss_pred HHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhH---HhcCcHHHHHHhhCCCC
Q psy15604 640 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI---VEAGGMQALAMHLGHPS 716 (986)
Q Consensus 640 ~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l---~~~g~~~~L~~ll~~~~ 716 (986)
+|+|.||+.+ ++.+..+++.|++++|+.++.+.+ ...+..++|+|.+|+...+....+ ...|++++|+.++.+++
T Consensus 516 a~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~ 593 (810)
T 3now_A 516 ARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC 593 (810)
T ss_dssp HHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS
T ss_pred HHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC
Confidence 9999999965 779999999999999999999887 456788999999998764433222 11468999999998764
Q ss_pred -HHHHHHHHHHHHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCccccccc
Q psy15604 717 -QRLVQNCLWTLRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEP 792 (986)
Q Consensus 717 -~~v~~~al~~L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~ 792 (986)
...+..|+++|+||++... +.....|.++.|+.++.++++.+++.|+++|+|++.+.+.+.+.+
T Consensus 594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v------------ 661 (810)
T 3now_A 594 TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE------------ 661 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH------------
Confidence 4455789999999996542 345567999999999999999999999999999988765433211
Q ss_pred ccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCc
Q psy15604 793 ADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDR 872 (986)
Q Consensus 793 ~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~ 872 (986)
...|++..|. .+..+++
T Consensus 662 -------------------------------------------------------------~~~g~l~~Lv--~LL~s~d 678 (810)
T 3now_A 662 -------------------------------------------------------------GNNDRVKFLA--LLCEDED 678 (810)
T ss_dssp -------------------------------------------------------------SSSSHHHHHH--HGGGCSS
T ss_pred -------------------------------------------------------------hccCcHHHHH--HHhcCCC
Confidence 1236677777 6677888
Q ss_pred hhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhc-cccchhhhhcCcHHHH
Q psy15604 873 EEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALC-QANHAPLREYGAIHLL 951 (986)
Q Consensus 873 ~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~-~~~~~~~~~~~~~~~l 951 (986)
+.+++.|+++|.|++++++ ..++..++..+++|+|+++|+++ +..+.+.++.+|.|++.. +.....+.+.|++|.|
T Consensus 679 ~~vq~~Aa~ALanLt~~s~--~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L 755 (810)
T 3now_A 679 EETATACAGALAIITSVSV--KCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755 (810)
T ss_dssp HHHHHHHHHHHHHHHHHCH--HHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCH--HHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 9999999999999999752 44566666589999999999998 888999999999999864 6678889999999999
Q ss_pred HHHHHH
Q psy15604 952 VILLNR 957 (986)
Q Consensus 952 ~~~l~~ 957 (986)
++++..
T Consensus 756 ~~LL~~ 761 (810)
T 3now_A 756 SGLGQL 761 (810)
T ss_dssp TTSCCC
T ss_pred HHHHhC
Confidence 999843
No 4
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.9e-40 Score=401.17 Aligned_cols=556 Identities=47% Similarity=0.624 Sum_probs=446.6
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
.+++.++..|.+++.+.+..++..+..+ .+..+..|+++.|+.+|.++++.++..|+.+|.+++.++..+.
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~---------~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ---------DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh---------hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3688999999998877776655544321 1224458999999999999999999999999999999888888
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
.+...+++++.|+++|++++++++++.|+.+|.+|+..++++..+++.|+++.|+.+|+++++.++..|+.+|.|++..+
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88876567899999999767999999999999999999889999999999999999999999999999999999999887
Q ss_pred CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKV 316 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~ 316 (986)
+..+..+.+.|+++.|+.++.+++.+++..++.+|.+++..+++.+..+.+.|+++.|+.+++.++.+..++.+..+|++
T Consensus 266 ~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345 (780)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 88888898999999999999999999999999999999998899999999999999999999998877788889999999
Q ss_pred hhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc-----------ccccccCCchHHHHHHHHHHHH
Q psy15604 317 LSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-----------KVSLLFNEIENIQRVAAGLLCE 385 (986)
Q Consensus 317 Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~-----------~i~ll~~~~~~~~~~a~~~L~~ 385 (986)
|+.+..++..+++.|+++.|+.++.++++.++..++++|.+++.... .+.++.+.++.++..|+.+|.+
T Consensus 346 Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999976542 2677788899999999999999
Q ss_pred HhhC-hhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHH
Q psy15604 386 LAQD-KEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAV 464 (986)
Q Consensus 386 l~~~-~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 464 (986)
++.+ ++.+..+.+.|+++.|+.++.....
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-------------------------------------------------- 455 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGD-------------------------------------------------- 455 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTT--------------------------------------------------
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCC--------------------------------------------------
Confidence 9865 4677777777777777776653211
Q ss_pred HhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc----chhhhcccCcHHHH
Q psy15604 465 QRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS----RHAIMNSPQMVAAL 540 (986)
Q Consensus 465 ~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~l~~~~~~i~~L 540 (986)
...++..|+.+|++++..... +..+.. .++++.|
T Consensus 456 -----------------------------------------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~-~~~l~~L 493 (780)
T 2z6g_A 456 -----------------------------------------REDITEPAICALRHLTSRHQDAEMAQNAVRL-HYGLPVV 493 (780)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH-TTCHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-cCCHHHH
Confidence 124455556666666543221 223444 3889999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCc
Q psy15604 541 VHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGG 620 (986)
Q Consensus 541 ~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~ 620 (986)
+.+|.+.+.+.++..++|+|.|++..++++..+.+.|+++.|+.+|.+++.+++..++|++.|.... .|
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~----------~~- 562 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV----------EG- 562 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCS----------TT-
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhh----------cc-
Confidence 9999887667999999999999999888888899999999999999988889999999988771100 11
Q ss_pred HHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHH
Q psy15604 621 LQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIV 700 (986)
Q Consensus 621 v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~ 700 (986)
...+.++..++.+|.+|+.. ++++..+.+.++++.|+.++.+.+ +.++..++.+|.+|+..+..+..+.
T Consensus 563 ---------~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~i~ 631 (780)
T 2z6g_A 563 ---------VRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIE 631 (780)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred ---------cChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 12356778899999999975 678888889999999999999887 6788889999999987777778899
Q ss_pred hcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCC
Q psy15604 701 EAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQD 755 (986)
Q Consensus 701 ~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~ 755 (986)
+.|+++.|..++.++++.++..|+++|.+++............++.+..++.+++
T Consensus 632 ~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686 (780)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence 9999999999999999999999999999999655422211124455666666554
No 5
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.8e-40 Score=392.91 Aligned_cols=526 Identities=49% Similarity=0.659 Sum_probs=436.4
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc
Q psy15604 116 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR 195 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~ 195 (986)
..+..|+++.|+.+|+++++.++..|+.+|.+++.++..+..+....|+++.|++.|.++++++++..|+.+|.+|+..+
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 34688999999999999999999999999999999988888888765678999999998679999999999999999998
Q ss_pred cchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q psy15604 196 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275 (986)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La 275 (986)
+++..+++.|+++.|+++|++++++++..|+.+|.+++..++..+..+.+.|+++.|+.+|++.+++++..++.+|.+++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999877778888989999999999999999999999999999999
Q ss_pred ccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHH
Q psy15604 276 YGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTL 355 (986)
Q Consensus 276 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L 355 (986)
.++++.+..+.+.|+++.|++++++++.+..++.+..+|++|+.++.++..+++.|+++.|+.++.++++.++..++|+|
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L 248 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88899999999999999999999998877788999999999999999999999999999999999999999999999999
Q ss_pred hcccccccc-----------cccccCCchHHHHHHHHHHHHHhhC-hhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHH
Q psy15604 356 RNLSDAGTK-----------VSLLFNEIENIQRVAAGLLCELAQD-KEGAETIEAEGATAPLTDLLHSRNEGVEILIQGV 423 (986)
Q Consensus 356 ~~ls~~~~~-----------i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~ 423 (986)
.+++...+. +.++.+.++.++..++.+|.+++.+ ++.+..+.+.|+++.|+.++.+..+
T Consensus 249 ~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------- 319 (644)
T 2z6h_A 249 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--------- 319 (644)
T ss_dssp HHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT---------
T ss_pred HHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC---------
Confidence 999875432 6777888999999999999999865 4777777777777777777653211
Q ss_pred HHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhc
Q psy15604 424 HKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLN 503 (986)
Q Consensus 424 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~ 503 (986)
T Consensus 320 -------------------------------------------------------------------------------- 319 (644)
T 2z6h_A 320 -------------------------------------------------------------------------------- 319 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHhhhccc----cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCCh
Q psy15604 504 DEDQVVVSQAAMMVHQLSKKEA----SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGI 579 (986)
Q Consensus 504 ~~~~~~~~~a~~~L~~l~~~~~----~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i 579 (986)
.+.++..|+.+|++++.... .+..+.. .++++.|+++|++..++.+++.++|+|.|++.+++++..+.+.|++
T Consensus 320 --~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i 396 (644)
T 2z6h_A 320 --REDITEPAICALRHLTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 396 (644)
T ss_dssp --CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH-TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHH
T ss_pred --cHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCH
Confidence 13445555555565544321 1222444 3889999999987766899999999999999988888999999999
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHh
Q psy15604 580 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 659 (986)
Q Consensus 580 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 659 (986)
+.|+.+|.+++.+++..++|++.|-... .|+ .+..++..++.+|++|+.. +..+..+.+
T Consensus 397 ~~Lv~lL~~~~~~vr~~a~~al~n~~~~----------~~~----------~~~~v~~~a~~aL~~La~~-~~~~~~l~~ 455 (644)
T 2z6h_A 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFV----------EGV----------RMEEIVEGCTGALHILARD-VHNRIVIRG 455 (644)
T ss_dssp HHHHHHHHHHHHHHTTC----------C----------CSS----------CHHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHhccchhhhhHhhhccccchhc----------ccc----------cHHHHHHHHHHHHHHHhcC-HHHHHHHHh
Confidence 9999999998899999999988872100 111 3456788899999999986 578888889
Q ss_pred CCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccc
Q psy15604 660 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDG 739 (986)
Q Consensus 660 ~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~ 739 (986)
.++++.|++++.+.+ +.++..++++|.+++..++.+..+.+.|+++.|..++.++++.++..|+++|+|++........
T Consensus 456 ~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~ 534 (644)
T 2z6h_A 456 LNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 534 (644)
T ss_dssp TTCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred CCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhh
Confidence 999999999999877 6678889999999998766778888999999999999999999999999999999865531111
Q ss_pred hhchHHHHHHHhccCC
Q psy15604 740 LESLLQSLVQLLASQD 755 (986)
Q Consensus 740 ~~~~l~~L~~ll~~~~ 755 (986)
..-.++.+..++.+++
T Consensus 535 ~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 535 KRLSVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHHHHHHHSCCSC
T ss_pred cccchHHHHHHHhCCC
Confidence 0002556666666554
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=6.5e-37 Score=371.75 Aligned_cols=475 Identities=74% Similarity=1.098 Sum_probs=384.5
Q ss_pred cccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHH
Q psy15604 437 GCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMM 516 (986)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 516 (986)
+..+|++..+++...+++++++..+..++.|..+++..+.++..++.+..+..+..|++|.|+.++.++++.++..|+.+
T Consensus 94 r~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~ 173 (780)
T 2z6g_A 94 RAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVM 173 (780)
T ss_dssp --------------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHhCcCccccCCCCCcccccccHHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 46677777666666677778888999999999998888877777766665566678999999999999999999999999
Q ss_pred HHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHH
Q psy15604 517 VHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 596 (986)
Q Consensus 517 L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~ 596 (986)
|.+++.+...+..+...+++++.|++.|+++.++++++.|+++|.+++..++++..+.+.|+++.|+.+|+++++.++..
T Consensus 174 L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~ 253 (780)
T 2z6g_A 174 VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFH 253 (780)
T ss_dssp HHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence 99999988777777766689999999998767899999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChh
Q psy15604 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYE 676 (986)
Q Consensus 597 a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 676 (986)
|+++|.|++.+.+..+..+.+.|+++.|+.++.+++..++..++.+|++++.++++.+..+.+.++++.|++++++.+.+
T Consensus 254 A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~ 333 (780)
T 2z6g_A 254 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333 (780)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHH
Confidence 99999999999888899998999999999999999999999999999999998889999999999999999999988878
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCCh
Q psy15604 677 KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDI 756 (986)
Q Consensus 677 ~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~ 756 (986)
...+.++.+|++|+.++.++..+++.|+++.|+.++.+.++.++..++++|+||+..........++++.|+.++.+.++
T Consensus 334 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~ 413 (780)
T 2z6g_A 334 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI 413 (780)
T ss_dssp HHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCH
Confidence 88889999999999999899999999999999999999999999999999999997666555567999999999999999
Q ss_pred hhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhh
Q psy15604 757 NVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMF 836 (986)
Q Consensus 757 ~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~ 836 (986)
.++..|+|+|+|++.+.+...
T Consensus 414 ~vr~~A~~aL~~L~~~~~~~~----------------------------------------------------------- 434 (780)
T 2z6g_A 414 NVVTCAAGILSNLTCNNYKNK----------------------------------------------------------- 434 (780)
T ss_dssp HHHHHHHHHHHHHTSSCHHHH-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHH-----------------------------------------------------------
Confidence 999999999997766544322
Q ss_pred hhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCC
Q psy15604 837 EMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPP 916 (986)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~ 916 (986)
..+.+.||++.|.+.+...++.+++++.|+.+|.|++.+++..+..+..++..+++|.|+++|.++
T Consensus 435 --------------~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~ 500 (780)
T 2z6g_A 435 --------------MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500 (780)
T ss_dssp --------------HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT
T ss_pred --------------HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC
Confidence 234556888998866655455569999999999999988776677788899999999999999988
Q ss_pred CCchHHHHHHHHHHhhhhccccchhhhhcCcHHHHHHHHHHHHHHHHhhhccCCCcccccCccccccc
Q psy15604 917 SRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLNRAFTDTQRVSRTGLFFRSFLGGVVVKTL 984 (986)
Q Consensus 917 ~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (986)
..+.++++++.+|+|++.++.++..+.+.|++|.|+.+|.+.+.++++.........++..|.+.+++
T Consensus 501 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v 568 (780)
T 2z6g_A 501 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568 (780)
T ss_dssp CCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHH
Confidence 33479999999999999999999999999999999999998888887754321111125555555544
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=366.48 Aligned_cols=509 Identities=19% Similarity=0.210 Sum_probs=418.1
Q ss_pred hhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhc-CChHHHHHhhCCC-CHhHHHHHHHHHHHHhcCC
Q psy15604 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKS-GGIPALVKLLSSP-VESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~ 236 (986)
...| .++.|+.+|++ +++.+++.|+.+|.+++.+.+++..++.. |+++.|+++|.++ +++++..|+.+|.+++..
T Consensus 11 ~~~g-~i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~- 87 (644)
T 2z6h_A 11 LATR-AIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH- 87 (644)
T ss_dssp -CTT-THHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-
T ss_pred hhhc-hHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-
Confidence 3444 57999999997 69999999999999999998888877765 8999999999865 889999999999999954
Q ss_pred CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKV 316 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~ 316 (986)
++.+..+.+.|+++.|+.+|+++++.++..++.+|.+++..++..+..+.+.|+++.|+.++++++.. ++..++.+|++
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~ 166 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-FLAITTDCLQI 166 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-HHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHH-HHHHHHHHHHH
Confidence 55888899999999999999999999999999999999987777888899999999999999988754 77777889999
Q ss_pred hhh-CCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHH
Q psy15604 317 LSV-CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAET 395 (986)
Q Consensus 317 Ls~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 395 (986)
++. .+.++..+.+.|+++.|+.++.+ ...+..+..++.+|.+++.+++++..
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~---------------------------~~~~~~~~~a~~~L~nLs~~~~~~~~ 219 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRT---------------------------YTYEKLLWTTSRVLKVLSVCSSNKPA 219 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTT---------------------------CCCHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHc---------------------------CChHHHHHHHHHHHHHHhcCcccHHH
Confidence 995 56677889999999999999976 33456788999999999999999999
Q ss_pred HHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHH
Q psy15604 396 IEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLK 475 (986)
Q Consensus 396 l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 475 (986)
+++.|+++.|+.++.+.+..++..+..++ .+++....
T Consensus 220 l~~~g~l~~L~~ll~~~~~~~~~~a~~~L--~nL~~~~~----------------------------------------- 256 (644)
T 2z6h_A 220 IVEAGGMQALGLHLTDPSQRLVQNCLWTL--RNLSDAAT----------------------------------------- 256 (644)
T ss_dssp HHHTTHHHHHHTTTTCSCHHHHHHHHHHH--HHHGGGCT-----------------------------------------
T ss_pred HHHCCCHHHHHHHHhcCCHHHHHHHHHHH--HHHhhcch-----------------------------------------
Confidence 99999999999999988766655444333 22221100
Q ss_pred HHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCC-CHHHH
Q psy15604 476 HAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSN-DLETT 553 (986)
Q Consensus 476 ~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~-~~~~~ 553 (986)
......+.++.|++++++++++++..|+++|.+++.... .+..+.+. |+++.|+.++.+.+ .++++
T Consensus 257 -----------~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 257 -----------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp -----------TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHH
T ss_pred -----------hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHH
Confidence 000013458999999999999999999999999988754 46666664 89999999997643 38999
Q ss_pred HHHHHHHHHhhCC-c---cchhhhhccCChHHHHHhcCCCC-HhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhh
Q psy15604 554 KGAVGTLHNLSHH-R---QGLLAIFKSGGIPALVKLLSSPV-ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL 628 (986)
Q Consensus 554 ~~a~~~L~~ls~~-~---~~~~~i~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll 628 (986)
..++++|.|++.. + ..+..+.+.|+++.|+++|++++ +.++..++|+|+|++.+.+ .+..+.+.|+++.|++++
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHH
Confidence 9999999999873 3 23455788999999999999875 6999999999999997644 568888999999999999
Q ss_pred cCCCHhHHHHHHHHHHH--HhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHH
Q psy15604 629 GRNNVKFLAIVTDCLQI--LAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQ 706 (986)
Q Consensus 629 ~~~~~~v~~~a~~aL~~--L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~ 706 (986)
.+.++.++..++|++.| +.. + .+.+.++..++.+|++|+..+.++..+.+.|+++
T Consensus 404 ~~~~~~vr~~a~~al~n~~~~~------------~-----------~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~ 460 (644)
T 2z6h_A 404 VRAHQDTQRRTSMGGTQQQFVE------------G-----------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 460 (644)
T ss_dssp HHHHHHHTTC----------CC------------S-----------SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH
T ss_pred hccchhhhhHhhhccccchhcc------------c-----------ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHH
Confidence 99889999999998876 221 1 1346677889999999998888888898999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcccc--cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHH
Q psy15604 707 ALAMHLGHPSQRLVQNCLWTLRNLSDAGT--KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALV 777 (986)
Q Consensus 707 ~L~~ll~~~~~~v~~~al~~L~nLs~~~~--~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v 777 (986)
.|+.++.++++.++..++++|+|++.... ......|.++.|..++.+++++++..|+++|.|++...+...
T Consensus 461 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 461 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 99999999999999999999999985432 334456899999999999999999999999999877654433
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.7e-36 Score=355.16 Aligned_cols=413 Identities=77% Similarity=1.140 Sum_probs=362.0
Q ss_pred HHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHH
Q psy15604 480 NLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGT 559 (986)
Q Consensus 480 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~ 559 (986)
++..|+.+..+..|.++.|+++++++++.++..|+.+|.+++.++..+..++...++++.|+.+|.++++++++..++++
T Consensus 4 ~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 4 NLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp SCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34556666777789999999999999999999999999999998887777776668999999999876689999999999
Q ss_pred HHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHH
Q psy15604 560 LHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIV 639 (986)
Q Consensus 560 L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a 639 (986)
|.+++..++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+.+..+..+.+.|+++.|++++.++++.++..+
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 99999988899999999999999999999999999999999999999888888899899999999999999999999999
Q ss_pred HHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHH
Q psy15604 640 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 719 (986)
Q Consensus 640 ~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 719 (986)
+.+|.+++.++++.+..+.+.++++.|++++++++++...+.++.+|++|+.++.++..+++.|+++.|+.++.++++.+
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 99999999988899999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCc
Q psy15604 720 VQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNM 799 (986)
Q Consensus 720 ~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~ 799 (986)
+..++|+|+||+..........++++.|+.++.+++++++..|+|+|+|++.+.++.
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~----------------------- 300 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN----------------------- 300 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH-----------------------
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-----------------------
Confidence 999999999999766555556799999999999999999999999999776544332
Q ss_pred hhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHH
Q psy15604 800 WQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPA 879 (986)
Q Consensus 800 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a 879 (986)
+..+.+.||++.|.+.+...++++++++.+
T Consensus 301 --------------------------------------------------~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a 330 (529)
T 1jdh_A 301 --------------------------------------------------KMMVCQVGGIEALVRTVLRAGDREDITEPA 330 (529)
T ss_dssp --------------------------------------------------HHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------------HHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence 234455688999987666566778999999
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhccccchhhhhcCcHHHHHHHHHHHH
Q psy15604 880 VCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLNRAF 959 (986)
Q Consensus 880 ~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~~~l~~~l~~~~ 959 (986)
+.+|.|++.+++..+..+..+.+.+++|.+.++|+++.++.+++.++.+|+|++.++.++..+.+.|++|.|+.+|.+.+
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~ 410 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHh
Confidence 99999999887766777888899999999999999873357999999999999999999999999999999999999888
Q ss_pred HHHHhh
Q psy15604 960 TDTQRV 965 (986)
Q Consensus 960 ~~~~~~ 965 (986)
.++++.
T Consensus 411 ~~v~~~ 416 (529)
T 1jdh_A 411 QDTQRR 416 (529)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 887775
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.5e-37 Score=358.44 Aligned_cols=391 Identities=18% Similarity=0.224 Sum_probs=334.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccc
Q psy15604 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQG 569 (986)
Q Consensus 493 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~ 569 (986)
..++.+++.++++|++.|..|+..++++.+.+. +.+.+++. |+||.|+++|+.++++++|.+|+|+|+|++. ++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 459999999999999999999999999865443 47888886 9999999999888789999999999999987 7788
Q ss_pred hhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCC-----HhHHHHHHHHHH
Q psy15604 570 LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN-----VKFLAIVTDCLQ 644 (986)
Q Consensus 570 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~-----~~v~~~a~~aL~ 644 (986)
+..+++.|++|.|+.+|++++++++++|+|+|+||+.+.+..|..+.+.|++++|+.++.+++ ..+++.++|+++
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998754 457889999999
Q ss_pred HHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHHHH
Q psy15604 645 ILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQNC 723 (986)
Q Consensus 645 ~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~a 723 (986)
|++.+...........++++.|++++.+.+ +.++..++|+|++|+.++.++ ..+.+.|+++.|+.++.++++.++.++
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 999975333333333467889999998887 567788999999999887655 677889999999999999999999999
Q ss_pred HHHHHHhhccc---ccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc------------CCccc
Q psy15604 724 LWTLRNLSDAG---TKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA------------GDREE 788 (986)
Q Consensus 724 l~~L~nLs~~~---~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~------------~~~~~ 788 (986)
+++|+||+... .+.....|+++.|..+++++++.+++.|||+|+|++++++++.+.+++. ++..+
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 99999998433 3455667999999999999999999999999999999999999988765 67889
Q ss_pred ccccccc-----cCCchhhHHHHHhcCCCCC----cccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCch
Q psy15604 789 ITEPADH-----SVNMWQQQNYLVDSGIHSG----VNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGV 859 (986)
Q Consensus 789 ~~e~~~~-----~~~~~~~~~~l~~~~~~~~----L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 859 (986)
+++++|+ .+++.+++.++++.|++++ |...|++++..+ |++|.++.+.....+ ..+.+...+++.||+
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~--L~aL~nil~~~~~~~-~~~~~~~~iee~ggl 451 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI--LDAISNIFQAAEKLG-ETEKLSIMIEECGGL 451 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH--HHHHHHHHHHHHTTT-CHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHhHhcc-chHHHHHHHHHcCcH
Confidence 9999999 4678999999999999877 677888877776 788875554322111 123455678999999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHhhcCC
Q psy15604 860 EALVQTIVNAGDREEITEPAVCALRHLTSRH 890 (986)
Q Consensus 860 ~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~ 890 (986)
++|+ .|++++|++|+++|..+|.+++...
T Consensus 452 ~~ie--~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 452 DKIE--ALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHH--HGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHH--HHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999 9999999999999999999999754
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.3e-36 Score=352.73 Aligned_cols=392 Identities=18% Similarity=0.219 Sum_probs=333.7
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Ccc
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQ 568 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~ 568 (986)
...++.+++.++++|++.+..|+..++++.+.+. ..+.++.. |++|.|+++|..+++++++..|+|+|+|++. +++
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~-G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHT-THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHC-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4568999999999999999999999999855443 46778876 9999999999888789999999999999998 567
Q ss_pred chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCC-----HhHHHHHHHHH
Q psy15604 569 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN-----VKFLAIVTDCL 643 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~-----~~v~~~a~~aL 643 (986)
.+..+++.|++|.|+.+|.++++++++.|+|+|+||+.+++..+..+.+.|++++|+.++..++ ..+++.++|++
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999998653 45788999999
Q ss_pred HHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHHH
Q psy15604 644 QILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQN 722 (986)
Q Consensus 644 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~ 722 (986)
++++.+..+........++++.|++++.+.+ +.++..++|+|++++.++... ..+++.|+++.|+.++.++++.++.+
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 9999975333333333467899999999887 567788999999999887654 67788999999999999999999999
Q ss_pred HHHHHHHhhccc---ccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhc------------CCcc
Q psy15604 723 CLWTLRNLSDAG---TKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA------------GDRE 787 (986)
Q Consensus 723 al~~L~nLs~~~---~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~------------~~~~ 787 (986)
++++|+||+... .+.....|+++.|+.++.++++.++++|||+|+||+++++++.+.+++. ++..
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 999999998433 3455677999999999999999999999999999999999999888765 6778
Q ss_pred cccccccc-----cCCchhhHHHHHhcCCCCC----cccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCc
Q psy15604 788 EITEPADH-----SVNMWQQQNYLVDSGIHSG----VNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGG 858 (986)
Q Consensus 788 ~~~e~~~~-----~~~~~~~~~~l~~~~~~~~----L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 858 (986)
++++++|+ .+++++++.++++.|++++ |.+.|++++.++ |++|.++.+.....+ ..+.+...+++.||
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~--L~aL~nil~~~~~~~-~~~~~~~~iee~gg 469 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI--LDAISNIFQAAEKLG-ETEKLSIMIEECGG 469 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH--HHHHHHHHHHHHTTT-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHhHhcc-ChHHHHHHHHHCCc
Confidence 99999999 4678999999999999877 677888887776 788875543322111 12345567899999
Q ss_pred hHHHHHHHHhcCCchhhHHHHHHHHHHhhcCC
Q psy15604 859 VEALVQTIVNAGDREEITEPAVCALRHLTSRH 890 (986)
Q Consensus 859 ~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~ 890 (986)
+++|+ .|++|+|++|+++|..+|.+|+...
T Consensus 470 l~~ie--~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 470 LDKIE--ALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHT--GGGGCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHH--HHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999 8999999999999999999999754
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=7.4e-33 Score=314.65 Aligned_cols=421 Identities=18% Similarity=0.196 Sum_probs=319.4
Q ss_pred HHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc-Ch
Q psy15604 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQ 279 (986)
Q Consensus 201 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~-~~ 279 (986)
-+..+.+|.|+.+|.+++++++..|+.+|.+++.+++..+..|.+.|+||.|+.+|++.++.++..|+.+|.+|+.+ ++
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34678999999999999999999999999999987888999999999999999999999999999999999999985 68
Q ss_pred hhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccc
Q psy15604 280 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 359 (986)
Q Consensus 280 ~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls 359 (986)
+++..+++.|++++|+++|++..+..+++.++.+||+|+.++.++..+++ ++++.|++++..+.. +..
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~s-----------g~~ 191 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHS-----------GWE 191 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHH-----------CCC
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccc-----------ccc
Confidence 99999999999999999999865555889999999999998888888885 679999997621000 000
Q ss_pred ccc-cccccccCCchHHHHHHHHHHHHHhhCh-hhHHHHHhcCC-cHHHHHHhccC------chhHHHHHHHHHHHHhhc
Q psy15604 360 DAG-TKVSLLFNEIENIQRVAAGLLCELAQDK-EGAETIEAEGA-TAPLTDLLHSR------NEGVEILIQGVHKIFKIH 430 (986)
Q Consensus 360 ~~~-~~i~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~-l~~Lv~ll~~~------~~~~~~~~~~~~al~~~~ 430 (986)
... ..-.+..+.++.+++.|+++|.||+.+. +.|+.+++.++ ++.|+.++++. +......+.
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav--------- 262 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV--------- 262 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH---------
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH---------
Confidence 000 0000112456899999999999999765 67999998655 57999998742 111110000
Q ss_pred cccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhh-cCCHHHHHHHhcCCCHHH
Q psy15604 431 KINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLA-TRAIPELIKLLNDEDQVV 509 (986)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~-~~~i~~L~~ll~~~~~~~ 509 (986)
.++.+|.. ....+.. ... +.....+.+
T Consensus 263 ---------------------------------------------~aL~NLs~-~~~~e~~~~~~---~~~~~~~~~--- 290 (584)
T 3l6x_A 263 ---------------------------------------------CLLRNLSY-QVHREIPQAER---YQEAAPNVA--- 290 (584)
T ss_dssp ---------------------------------------------HHHHHHHT-THHHHSTTCCC---------------
T ss_pred ---------------------------------------------HHHHHhhc-cccccccchhh---hhhhccccc---
Confidence 11222221 1111110 000 000000000
Q ss_pred HHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc-----cchhhhhccCChHHHHH
Q psy15604 510 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR-----QGLLAIFKSGGIPALVK 584 (986)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~-----~~~~~i~~~~~i~~Lv~ 584 (986)
.............+.. +++++.|+.+|+.+.++.+++.|+|+|.||+... ..+..+.+.+++|.|+.
T Consensus 291 -------~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 291 -------NNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp ------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred -------ccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 0112333444555555 4789999999987778999999999999998743 23345567899999999
Q ss_pred hcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC--------CHhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 585 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN--------NVKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 585 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~--------~~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
||.++++.++..|+|+|.||+.+. ..+..+ ..|+++.|+.+|.++ +.+++..+|++|.||+.++++.+..
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~-~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~ 440 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDA-RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTC-SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCh-hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999765 466666 689999999999876 4678899999999999988999999
Q ss_pred HHhCCChHHHHHHHhcC-ChhHHHHHHHHHHHHhhcCCCCchhHHhcCc
Q psy15604 657 ILASQGPVELVRIMRSY-DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGG 704 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~-~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~ 704 (986)
+.+.|+++.|+.++++. ..+...+.|+++|++|..+.+.+..+-+.|+
T Consensus 441 I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 99999999999999985 3477888999999999998888887777764
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.1e-31 Score=311.02 Aligned_cols=406 Identities=17% Similarity=0.233 Sum_probs=330.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCc--cchHHHHhcCChHHHHHhhCCC-CHhHHHHHHHHHHHHhcCCCCchH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHR--QGLLAIFKSGGIPALVKLLSSP-VESVLFYAITTLHNLLLHQEGSKM 241 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~ 241 (986)
++.+++.+++ +|++.+..|+..+.++.+.. .-.+.+++.|+||.|+++|+.. +++++..|+++|.|++.++++.+.
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6999999988 79999999999999876543 3357899999999999999754 688999999999999988888999
Q ss_pred HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCC
Q psy15604 242 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 321 (986)
Q Consensus 242 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~ 321 (986)
.+.+.|++|.|+.+|.++++.++..++++|++|+.++++.+..+.+.|++++|+.++..++....
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~--------------- 202 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--------------- 202 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS---------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh---------------
Confidence 99999999999999999999999999999999999889999999999999999999987654311
Q ss_pred CChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q psy15604 322 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGA 401 (986)
Q Consensus 322 ~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~ 401 (986)
...+.+.++.+|.+++.+......+
T Consensus 203 --------------------------------------------------~~~~~~~a~~~L~nl~~~~~~~~~~----- 227 (510)
T 3ul1_B 203 --------------------------------------------------ACGYLRNLTWTLSNLCRNKNPAPPL----- 227 (510)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHHHHCCCSSCCCH-----
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHhhcccchhHH-----
Confidence 0112233444444444321110000
Q ss_pred cHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHH
Q psy15604 402 TAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNL 481 (986)
Q Consensus 402 l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l 481 (986)
T Consensus 228 -------------------------------------------------------------------------------- 227 (510)
T 3ul1_B 228 -------------------------------------------------------------------------------- 227 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy15604 482 INYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 561 (986)
Q Consensus 482 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~ 561 (986)
....+.+|.|++++.+++++++..|+++|.+++.........+...|+++.|+.+|.+. ++.++..++++|.
T Consensus 228 -------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~ 299 (510)
T 3ul1_B 228 -------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIG 299 (510)
T ss_dssp -------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHH
T ss_pred -------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHH
Confidence 00023378888889999999999999999999987766544444459999999999765 8899999999999
Q ss_pred HhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHH
Q psy15604 562 NLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT 640 (986)
Q Consensus 562 ~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~ 640 (986)
|++. ++..+..+.+.|+++.|+.+|++++++++..|+|+|.|++...+..+..+.+.|+++.|+.++.++++.++..++
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 9988 667788899999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHHHHHhcC-CcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-----CCC--chhHHhcCcHHHHHHhh
Q psy15604 641 DCLQILAYG-NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-----SSN--KPAIVEAGGMQALAMHL 712 (986)
Q Consensus 641 ~aL~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-----~~~--~~~l~~~g~~~~L~~ll 712 (986)
|+|.|++.+ +++....+++.|++++|+.+|...+ ..++..+.++|.++... ..+ ...+.+.|+++.|-.+.
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999874 4566778899999999999999888 56777888999987432 111 13455678888888877
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15604 713 GHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 713 ~~~~~~v~~~al~~L~nL 730 (986)
.|++..+...|...|-+.
T Consensus 459 ~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKY 476 (510)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 788888877777666443
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2e-31 Score=303.70 Aligned_cols=423 Identities=16% Similarity=0.120 Sum_probs=308.8
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLII 285 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~ 285 (986)
.+|.|+++|++++++++..|+.+|.+++.++++.+..+.+.|++|.|+++|+++++.++..++.+|.+|+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999998777788899999999999999999999999999999999999889999999
Q ss_pred HhCCCHHHHHHHHh-cCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCC--------CCHHHHHHHHHHHh
Q psy15604 286 LASQGPVELVRIMR-SYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH--------PSQRLVQNCLWTLR 356 (986)
Q Consensus 286 ~~~g~v~~L~~ll~-~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~--------~~~~~~~~~~~~L~ 356 (986)
++.|+++.|+++|+ +++. .+++.++.+|++|+.++.++..+.+ |+++.|+.++.. ++.+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~-------- 152 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNA-EIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSR-------- 152 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCH-HHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC----------------
T ss_pred HHcCCHHHHHHHHhhCCCH-HHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhc--------
Confidence 99999999999999 5554 5899999999999988888888999 999999999932 111100
Q ss_pred cccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhc-CCcHHHHHHhccC------chhHHHHHHHHHHHHhh
Q psy15604 357 NLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAE-GATAPLTDLLHSR------NEGVEILIQGVHKIFKI 429 (986)
Q Consensus 357 ~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~l~~Lv~ll~~~------~~~~~~~~~~~~al~~~ 429 (986)
...++.+++.|+++|.+|+.+++++..+.+. |+++.|+.++++. +......+.. .++++
T Consensus 153 ------------e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~--~L~nL 218 (457)
T 1xm9_A 153 ------------EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC--VLHNL 218 (457)
T ss_dssp -------------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHH--HHHHH
T ss_pred ------------ccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHH--HHHhc
Confidence 0145778889999999999989999999998 9999999999852 2222111111 12221
Q ss_pred ccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHH
Q psy15604 430 HKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVV 509 (986)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 509 (986)
..... ..+ + ... ..+....... .. .......+.......
T Consensus 219 s~~~~---~~~-----------------~-----------~~~---~~~~~~~~~~----~~---~~~~~~~~~~~~~~~ 257 (457)
T 1xm9_A 219 SYRLD---AEV-----------------P-----------TRY---RQLEYNARNA----YT---EKSSTGCFSNKSDKM 257 (457)
T ss_dssp TTTHH---HHS-----------------C-----------CHH---HHHHHTC---------------------------
T ss_pred ccchh---ccC-----------------c-----------chh---hhcccccccc----cc---cccccchhhccchhh
Confidence 10000 000 0 000 0000000000 00 000000000000000
Q ss_pred HHHHHH-HHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc-cc-----hhhhhccCChHHH
Q psy15604 510 VSQAAM-MVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR-QG-----LLAIFKSGGIPAL 582 (986)
Q Consensus 510 ~~~a~~-~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~-~~-----~~~i~~~~~i~~L 582 (986)
...... .+......+...+.++. .++++.|+.+|.++.++.+++.|+|+|.|++... +. +..+.+.|++|.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~L 336 (457)
T 1xm9_A 258 MNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI 336 (457)
T ss_dssp --------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHH
T ss_pred hhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHH
Confidence 000000 00000112223455555 4899999999988878999999999999999843 22 2234469999999
Q ss_pred HHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCC------HhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 583 VKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN------VKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 583 v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~------~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
+++|++++++++..|+|+|.|++.+ +..+..+. .|++++|+++|..++ +++...++++|.|+..++++....
T Consensus 337 v~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~ 414 (457)
T 1xm9_A 337 ARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414 (457)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHH
T ss_pred HHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999975 44666665 689999999998864 368889999999999888888889
Q ss_pred HHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc
Q psy15604 657 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 696 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~ 696 (986)
+.+.|++++|++++.+...+.+.+.++|+|.++..+.+.+
T Consensus 415 i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 9999999999999998833778889999999998776654
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-30 Score=305.09 Aligned_cols=405 Identities=17% Similarity=0.236 Sum_probs=332.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ccchHHHHhcCChHHHHHhhCC-CCHhHHHHHHHHHHHHhcCCCCchH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGSKM 241 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~ 241 (986)
++.+++.+.+ +|++.+..|+..+.++.+. ....+.+++.|+||.|+++|.. .+++++..|+++|.|++.+++..+.
T Consensus 78 l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6899998888 6999999999999887544 3446789999999999999965 4688999999999999988877888
Q ss_pred HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCC
Q psy15604 242 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 321 (986)
Q Consensus 242 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~ 321 (986)
.+.+.|++|.|+.+|.+.++.++..|+++|++|+.++++.+..+.+.|++++|+.++..++....
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~--------------- 221 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL--------------- 221 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS---------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh---------------
Confidence 99999999999999999999999999999999999889999999999999999999887653311
Q ss_pred CChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCC
Q psy15604 322 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGA 401 (986)
Q Consensus 322 ~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~ 401 (986)
...+.+.++.+|.+++.+......+
T Consensus 222 --------------------------------------------------~~~~~~~a~~~L~nl~~~~~~~~~~----- 246 (529)
T 3tpo_A 222 --------------------------------------------------ACGYLRNLTWTLSNLCRNKNPAPPL----- 246 (529)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHHHHCCCTTCCCH-----
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHhcccchhhH-----
Confidence 1112334444455554322110000
Q ss_pred cHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHH
Q psy15604 402 TAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNL 481 (986)
Q Consensus 402 l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l 481 (986)
T Consensus 247 -------------------------------------------------------------------------------- 246 (529)
T 3tpo_A 247 -------------------------------------------------------------------------------- 246 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy15604 482 INYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 561 (986)
Q Consensus 482 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~ 561 (986)
....+++|.|++++.+++++++..|+++|.+++.........+...|+++.|+.+|.+. ++.++..++++|.
T Consensus 247 -------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 247 -------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIG 318 (529)
T ss_dssp -------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHH
T ss_pred -------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHH
Confidence 00023478888889999999999999999999987766544444459999999999765 8899999999999
Q ss_pred HhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHH
Q psy15604 562 NLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT 640 (986)
Q Consensus 562 ~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~ 640 (986)
|++. +++.+..+.+.|+++.|+.+|+++++.++..|+|+|+|++.+.+..+..+.+.|+++.|+.++.++++.++..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 9988 667788899999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred HHHHHHhcC-CcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-----CCC--chhHHhcCcHHHHHHhh
Q psy15604 641 DCLQILAYG-NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-----SSN--KPAIVEAGGMQALAMHL 712 (986)
Q Consensus 641 ~aL~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-----~~~--~~~l~~~g~~~~L~~ll 712 (986)
|+|.|++.+ +++....+++.|++++|+.+|...+ ..++..+.++|.++... ..+ ...+.+.|+++.|-.+.
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence 999999874 4566778899999999999999888 55667888999988432 111 24466789999998888
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15604 713 GHPSQRLVQNCLWTLRN 729 (986)
Q Consensus 713 ~~~~~~v~~~al~~L~n 729 (986)
.|++..+...|...|-.
T Consensus 478 ~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 478 RHENESVYKASLNLIEK 494 (529)
T ss_dssp GCSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 88898888888766643
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=1e-30 Score=297.08 Aligned_cols=406 Identities=19% Similarity=0.203 Sum_probs=309.9
Q ss_pred CCcHHHHHHHHhhhcCCCcccccccccccccccCcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCH
Q psy15604 44 GGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAI 123 (986)
Q Consensus 44 g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i 123 (986)
|.+..|..+.++ .....-+++ +.++.|+.+|++++.+.+..|+.+|..++. .+++++..+.+.|+|
T Consensus 27 ~~~~~~~~~~~~------~~~~~~~~~------~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~--~~~~~k~~V~~~G~I 92 (584)
T 3l6x_A 27 GSLASLDSLRKG------GPPPPNWRQ------PELPEVIAMLGFRLDAVKSNAAAYLQHLCY--RNDKVKTDVRKLKGI 92 (584)
T ss_dssp -------------------CCCCCCCC------CCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHH
T ss_pred chHHHHHHHHhc------CCCCCCccc------ccHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCc
Confidence 666666666654 122333444 799999999999999999999888776653 456677888999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc--CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKK--EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAI 201 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 201 (986)
|.|+.+|++++..++..|+.+|.||+.. ++++..|.+.|| |+.|+++|+++.+.++++.|+.+|++|+.+++++..|
T Consensus 93 p~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga-Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I 171 (584)
T 3l6x_A 93 PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG-VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI 171 (584)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH-HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC-HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH
Confidence 9999999999999999999999999984 799999999986 6999999998678899999999999999999999999
Q ss_pred HhcCChHHHHHhhC------------------CCCHhHHHHHHHHHHHHhcCCCCchHHHHHc-CcHHHHHHHhcc----
Q psy15604 202 FKSGGIPALVKLLS------------------SPVESVLFYAITTLHNLLLHQEGSKMAVRLA-GGLQKMVLLLGR---- 258 (986)
Q Consensus 202 ~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-g~i~~L~~ll~~---- 258 (986)
++ |++|+|++++. ..+++++.+|+.+|.||+..+++.++.+.+. |+++.|+.++++
T Consensus 172 ~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 172 VD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp HH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred Hh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 96 57999999871 2357899999999999997777778888875 556799999975
Q ss_pred --CCHHHHHHHHHHHHHHhccCh-h------------------------hHHHHHhCCCHHHHHHHHhcCChHHHHHHHH
Q psy15604 259 --NNVKFLAIVTDCLQILAYGNQ-E------------------------SKLIILASQGPVELVRIMRSYDYEKLLWCTS 311 (986)
Q Consensus 259 --~~~~~~~~a~~aL~~La~~~~-~------------------------~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~ 311 (986)
.+.+.+..|+.+|.+|+.... + ....+.+.++++.|+.+++.+....++++++
T Consensus 251 ~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 456788999999999987311 0 0011122244577899998765566999999
Q ss_pred HHHHHhhhCCCC-----hHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHH
Q psy15604 312 RVLKVLSVCSSN-----KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCEL 386 (986)
Q Consensus 312 ~aL~~Ls~~~~~-----~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l 386 (986)
.+|++|+.+... +..+.+.++++.|+.+|.+ .++.++..|+++|.||
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s----------------------------~~~~v~~~A~~aL~nL 382 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN----------------------------EHERVVKAASGALRNL 382 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC----------------------------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC----------------------------CCHHHHHHHHHHHHHH
Confidence 999999865421 2344567999999888865 4556788888888999
Q ss_pred hhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHh
Q psy15604 387 AQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQR 466 (986)
Q Consensus 387 ~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 466 (986)
+.++.++..| ..|+++.|+.+|.+++...
T Consensus 383 s~~~~~~~~I-~~g~ip~LV~LL~~~~~~~-------------------------------------------------- 411 (584)
T 3l6x_A 383 AVDARNKELI-GKHAIPNLVKNLPGGQQNS-------------------------------------------------- 411 (584)
T ss_dssp HTTCSCHHHH-HHHHHHHHHHTSSSSSCSG--------------------------------------------------
T ss_pred hCChhHHHHH-HhCCHHHHHHHhcCCcccc--------------------------------------------------
Confidence 9888777766 6788899999887553110
Q ss_pred cCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhc-cccchhhhcccCcHHHHHHhhc
Q psy15604 467 LTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAIS 545 (986)
Q Consensus 467 l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~~~~i~~L~~lL~ 545 (986)
-.....+++..|+.+|.|+... +..++.+.+. |+|+.|+.+++
T Consensus 412 -----------------------------------~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~-g~I~~Lv~LL~ 455 (584)
T 3l6x_A 412 -----------------------------------SWNFSEDTVISILNTINEVIAENLEAAKKLRET-QGIEKLVLINK 455 (584)
T ss_dssp -----------------------------------GGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHT
T ss_pred -----------------------------------cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHh
Confidence 0011345566788888888654 4456777765 99999999997
Q ss_pred CC-CCHHHHHHHHHHHHHhhCCccchhhhhccCChH
Q psy15604 546 NS-NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIP 580 (986)
Q Consensus 546 ~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~ 580 (986)
+. ..+.+++.|+++|+++..+.+.+..+.+.|+=.
T Consensus 456 s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~ 491 (584)
T 3l6x_A 456 SGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKK 491 (584)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCG
T ss_pred CCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCH
Confidence 64 478999999999999999888888888766544
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=5.3e-30 Score=300.59 Aligned_cols=392 Identities=20% Similarity=0.215 Sum_probs=328.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcc--ccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Ccc
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQ 568 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~ 568 (986)
...++.++..+.++++.++..|+..|+++.... .....++.. |+++.|+.+|.+.+++.++..|+|+|.+++. +++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445999999999999999999999999996654 346667765 9999999999877569999999999999999 578
Q ss_pred chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhh-cCCCHhHHHHHHHHHHHHh
Q psy15604 569 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL-GRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll-~~~~~~v~~~a~~aL~~L~ 647 (986)
++..+++.|++|.|+.+|.++++.++..|+|+|+|++.+.+..+..+...|+++.|+.++ .++++.++..++|+|++|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999998888899999999999999999 5678999999999999999
Q ss_pred cCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 648 YGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
...+.....+ ..++++.|++++.+.+ ..++..++|+|++|+.++... ..+++.|+++.|+.++.++++.++..++++
T Consensus 232 ~~~~~~~~~~-~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPSFEQ-TRPALPALARLIHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp CSSSCCCHHH-HTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cCCCCCcHHH-HHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence 9765544444 4688999999998877 667789999999999876654 678889999999999999999999999999
Q ss_pred HHHhhcccc---cccchhchHHHHHHHhccC-ChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhh
Q psy15604 727 LRNLSDAGT---KVDGLESLLQSLVQLLASQ-DINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQ 802 (986)
Q Consensus 727 L~nLs~~~~---~~~~~~~~l~~L~~ll~~~-~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~ 802 (986)
|+||+.... +.....|+++.|+.++.++ ++.++..|||+|+|++.+++++++.+++
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~-------------------- 369 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN-------------------- 369 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--------------------
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--------------------
Confidence 999995332 3445579999999999998 9999999999999998888776665433
Q ss_pred HHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHH
Q psy15604 803 QNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCA 882 (986)
Q Consensus 803 ~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~ 882 (986)
.|+++.|.+ +..+.++++++.|+.+
T Consensus 370 -----------------------------------------------------~~~i~~L~~--lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 370 -----------------------------------------------------AGIIGPLVN--LLQTAEFDIKKEAAWA 394 (528)
T ss_dssp -----------------------------------------------------TTCHHHHHH--HHHHSCHHHHHHHHHH
T ss_pred -----------------------------------------------------CCCHHHHHH--HHhcCCHHHHHHHHHH
Confidence 366777773 3345588999999999
Q ss_pred HHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhcccc------------chhhhhcCcHHH
Q psy15604 883 LRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQAN------------HAPLREYGAIHL 950 (986)
Q Consensus 883 l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~~~~------------~~~~~~~~~~~~ 950 (986)
|.|++.+.. .+. ...+.+.++++.+.++|..+ +..++..++.+|.|+...... ...+.+.|.++.
T Consensus 395 L~nl~~~~~-~~~-~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 395 ISNATSGGS-HDQ-IKYLVSEGCIKPLCDLLICP-DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHSC-HHH-HHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHcCCC-HHH-HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 999987621 122 33444689999999999997 888999999999999765433 667788898999
Q ss_pred HHHHHHHHHHHHHh
Q psy15604 951 LVILLNRAFTDTQR 964 (986)
Q Consensus 951 l~~~l~~~~~~~~~ 964 (986)
+..+....+.+++.
T Consensus 472 l~~L~~~~~~~v~~ 485 (528)
T 4b8j_A 472 IENLQSHDNNEIYE 485 (528)
T ss_dssp HHHGGGCSSHHHHH
T ss_pred HHHHHcCCCHHHHH
Confidence 98886555555543
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=287.30 Aligned_cols=362 Identities=18% Similarity=0.195 Sum_probs=281.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC------------CHhHHHHHHHHHHHH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP------------VESVLFYAITTLHNL 232 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~~L 232 (986)
++.|+..+.+.+.. .....|..++.+++.+..+++.|++|.|+++|+.. +++++..|+.+|.|+
T Consensus 34 ~~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 46666667653333 26778999999999999999999999999999863 369999999999999
Q ss_pred hcCCCCchHHHHHcCcH----------HHHHHHhccCC--HH-----HH-------HHHHHHHHHHhccChhhHHHHHhC
Q psy15604 233 LLHQEGSKMAVRLAGGL----------QKMVLLLGRNN--VK-----FL-------AIVTDCLQILAYGNQESKLIILAS 288 (986)
Q Consensus 233 ~~~~~~~~~~i~~~g~i----------~~L~~ll~~~~--~~-----~~-------~~a~~aL~~La~~~~~~~~~~~~~ 288 (986)
+.+.++......+.|++ +.+++++.+.. ++ ++ ..|+++|.+++. ++++|..+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~ 188 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNEL 188 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHT
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHC
Confidence 99999888888888888 55666665431 11 32 378999999987 58899999999
Q ss_pred CCHHHHHHHHhcC----------ChHHHHHHHHHHHHHhhhCCC-ChHHHHH-hccHHHHHHHhCCCCHHHHHHHHHHHh
Q psy15604 289 QGPVELVRIMRSY----------DYEKLLWCTSRVLKVLSVCSS-NKPAIVE-AGGMQALAMHLGHPSQRLVQNCLWTLR 356 (986)
Q Consensus 289 g~v~~L~~ll~~~----------~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~-~g~l~~L~~ll~~~~~~~~~~~~~~L~ 356 (986)
|++++|+.++... ....++..++.+|.+|+.... ++..+.. .|.++.|+.+|.+
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-------------- 254 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-------------- 254 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC--------------
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC--------------
Confidence 9999999999631 224578889999999997654 4444544 4559999888765
Q ss_pred cccccccccccccCCchHHHHHHHHHHHHHhhC--hhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccc
Q psy15604 357 NLSDAGTKVSLLFNEIENIQRVAAGLLCELAQD--KEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINI 434 (986)
Q Consensus 357 ~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~ 434 (986)
++++++..|+.+|.+|+.. ++++..+.+.|+++.|+.++.+
T Consensus 255 --------------~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~----------------------- 297 (458)
T 3nmz_A 255 --------------ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE----------------------- 297 (458)
T ss_dssp --------------SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT-----------------------
T ss_pred --------------CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc-----------------------
Confidence 4566788888888888863 5677777777777777775422
Q ss_pred cccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHH
Q psy15604 435 HRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAA 514 (986)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 514 (986)
+.++.++..|+
T Consensus 298 ---------------------------------------------------------------------s~~~~v~~~A~ 308 (458)
T 3nmz_A 298 ---------------------------------------------------------------------VKKESTLKSVL 308 (458)
T ss_dssp ---------------------------------------------------------------------CCSHHHHHHHH
T ss_pred ---------------------------------------------------------------------CCCHHHHHHHH
Confidence 22344555666
Q ss_pred HHHHHhhh-ccccchhhhcccCcHHHHHHhhcCCCCH---HHHHHHHHHHHHhhC----CccchhhhhccCChHHHHHhc
Q psy15604 515 MMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDL---ETTKGAVGTLHNLSH----HRQGLLAIFKSGGIPALVKLL 586 (986)
Q Consensus 515 ~~L~~l~~-~~~~~~~l~~~~~~i~~L~~lL~~~~~~---~~~~~a~~~L~~ls~----~~~~~~~i~~~~~i~~Lv~lL 586 (986)
.+|++++. .+..+..+....|+++.|+.+|.+..+. ++++.|+|+|.|++. +++++..+.+.|++|.|+.+|
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 77777776 4345556663459999999999765433 589999999999994 778899999999999999999
Q ss_pred CCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 587 SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 587 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
++++.++++.|+|+|.|++..+++.+..+.+.|+++.|++++.+++++++..++|+|+||+..+|
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998777788999999999999999999999999999999999998764
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=5.8e-29 Score=291.71 Aligned_cols=404 Identities=16% Similarity=0.170 Sum_probs=333.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC-c-cchHHHHhcCChHHHHHhhCCCC-HhHHHHHHHHHHHHhcCCCCchH
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH-R-QGLLAIFKSGGIPALVKLLSSPV-ESVLFYAITTLHNLLLHQEGSKM 241 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~-~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~ 241 (986)
++.|+..|.+ ++++++..|+.+|.++... + +....+++.|++|.|+.+|.+++ +.++..|+.+|.+++.+++..+.
T Consensus 76 l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6999999987 6899999999999999665 3 67888999999999999999887 99999999999999987788888
Q ss_pred HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCC
Q psy15604 242 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 321 (986)
Q Consensus 242 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~ 321 (986)
.+.+.|+++.|+.+|.++++.++..++++|.+|+.+++..+..+.+.|+++.|+.++..+....++..++.+|.+|+...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999888899999999999999999965555558889999999999765
Q ss_pred CChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhh-HHHHHhcC
Q psy15604 322 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEG-AETIEAEG 400 (986)
Q Consensus 322 ~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g 400 (986)
.........|+++.|+.++.++ ++.++..++.+|.+++...+. ...+.+
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~----------------------------~~~v~~~a~~aL~~l~~~~~~~~~~~~~-- 284 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSN----------------------------DEEVLTDACWALSYLSDGTNDKIQAVIE-- 284 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHTSSCHHHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHHHCCC----------------------------CHHHHHHHHHHHHHHHcCCHHHHHHHHH--
Confidence 5555666789999999888664 455666777777777643322 222323
Q ss_pred CcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHH
Q psy15604 401 ATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVN 480 (986)
Q Consensus 401 ~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~ 480 (986)
T Consensus 285 -------------------------------------------------------------------------------- 284 (528)
T 4b8j_A 285 -------------------------------------------------------------------------------- 284 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHH
Q psy15604 481 LINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGT 559 (986)
Q Consensus 481 l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~ 559 (986)
.|+++.|+.++.++++.++..|+.+|++++..... ...++. .++++.|+.+|.+..++.++..|+|+
T Consensus 285 -----------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 285 -----------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp -----------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34466666666666677777788888888775443 445555 49999999999875589999999999
Q ss_pred HHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcC-CCCChHHHHHhCcHHHHHHhhcCCCHhHHH
Q psy15604 560 LHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH-QEGSKMAVRLAGGLQKMVLLLGRNNVKFLA 637 (986)
Q Consensus 560 L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~ 637 (986)
|.|++. .++....+++.|++|.|+.+|.++++.++..|+++|+|++.. .+.....+.+.|+++.|+.++.++++.++.
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 999998 556677888999999999999999999999999999999987 455667777899999999999999999999
Q ss_pred HHHHHHHHHhcCCc-----------ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q psy15604 638 IVTDCLQILAYGNQ-----------ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC 692 (986)
Q Consensus 638 ~a~~aL~~L~~~~~-----------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~ 692 (986)
.++++|.+|+...+ .....+.+.+++..+..+..+.+ +.+...+.+++..+...
T Consensus 433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~-~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 433 VCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN-NEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCCC
Confidence 99999999987422 24556778888998988877766 66777888888877554
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=288.40 Aligned_cols=376 Identities=18% Similarity=0.149 Sum_probs=293.1
Q ss_pred ChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccC------------CHHHHHHHHHHHHH
Q psy15604 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN------------NVKFLAIVTDCLQI 273 (986)
Q Consensus 206 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~------------~~~~~~~a~~aL~~ 273 (986)
.++.|+..+.+.+++ ...+.|..+. .+++.+..+.+.|++|.|+++|+.. ++.++..++++|.|
T Consensus 33 ~~~~l~~~~~~~~~~---~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKD---DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp ------------CCH---HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH---HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 467777888777665 3788888999 6677889999999999999999863 26899999999999
Q ss_pred HhccChhhHHHHHhCCCH----------HHHHHHHhcCC-hHH-----HH-------HHHHHHHHHhhhCCCChHHHHHh
Q psy15604 274 LAYGNQESKLIILASQGP----------VELVRIMRSYD-YEK-----LL-------WCTSRVLKVLSVCSSNKPAIVEA 330 (986)
Q Consensus 274 La~~~~~~~~~~~~~g~v----------~~L~~ll~~~~-~~~-----~~-------~~a~~aL~~Ls~~~~~~~~i~~~ 330 (986)
++.+.++......+.+++ +.++++++++. .++ ++ .+|+.+|.+++.++.++..+.+.
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~ 188 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL 188 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 999888887777777777 66677777652 111 33 37889999999888899999999
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChh-hHHHHHhcCCcHHHHHHh
Q psy15604 331 GGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKE-GAETIEAEGATAPLTDLL 409 (986)
Q Consensus 331 g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~l~~Lv~ll 409 (986)
|+++.|+.++...... + +. .-...++.++..|+.+|.+++.+++ .+..+...
T Consensus 189 G~l~~Lv~LL~~~~~~------~---~~--------~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~---------- 241 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEM------Y---GL--------TNDHYSITLRRYAGMALTNLTFGDVANKATLCSM---------- 241 (458)
T ss_dssp THHHHHHHHHHHHHHH------S---TT--------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC----------
T ss_pred CCHHHHHHHHhhhhcc------c---cc--------ccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHc----------
Confidence 9999999998421000 0 00 0002346789999999999986543 33222111
Q ss_pred ccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhh
Q psy15604 410 HSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDAD 489 (986)
Q Consensus 410 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~ 489 (986)
T Consensus 242 -------------------------------------------------------------------------------- 241 (458)
T 3nmz_A 242 -------------------------------------------------------------------------------- 241 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhc--cccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-C
Q psy15604 490 LATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK--EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-H 566 (986)
Q Consensus 490 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~ 566 (986)
.|.+|.|+++|++++++++..|+++|++++.. +..+..+.+. |+++.|+++|..+.++.+++.++++|+||+. +
T Consensus 242 --~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~ 318 (458)
T 3nmz_A 242 --KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHC 318 (458)
T ss_dssp --HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC
T ss_pred --CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC
Confidence 22367777777777888889999999999874 3456777765 9999999987665688999999999999999 7
Q ss_pred ccchhhhh-ccCChHHHHHhcCCCCH----hHHHHHHHHHHHhhc---CCCCChHHHHHhCcHHHHHHhhcCCCHhHHHH
Q psy15604 567 RQGLLAIF-KSGGIPALVKLLSSPVE----SVLFYAITTLHNLLL---HQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAI 638 (986)
Q Consensus 567 ~~~~~~i~-~~~~i~~Lv~lL~~~~~----~v~~~a~~aL~nl~~---~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~ 638 (986)
++++..++ ..|++|.|+.+|.++++ ++++.|+|+|.|++. ..++.+..+.+.|+++.|+.+|++++..++..
T Consensus 319 ~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHH
Confidence 78888888 79999999999988765 499999999999997 56778889999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCc
Q psy15604 639 VTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 696 (986)
Q Consensus 639 a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~ 696 (986)
|+|+|+||+.++++.+..+.+.|+++.|++++++.+ +.+++.++|+|++|+.+.+.+
T Consensus 399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHhh
Confidence 999999999877899999999999999999998877 667789999999998876543
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=2.5e-29 Score=294.64 Aligned_cols=394 Identities=16% Similarity=0.168 Sum_probs=329.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcc--ccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Ccc
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQ 568 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~ 568 (986)
.+.++.++..++++++.++..|+..|+++...+ .....++.. |+++.|+.+|.+.+++.++..|+|+|.+++. .++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 567999999999999999999999999996653 345566664 9999999999876589999999999999998 557
Q ss_pred chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 569 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
.+..+++.|+++.|+.+|+++++.+++.|+|+|++++.+.+..+..+...|+++.|+.++.++++.++..++|+|++|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 78888899999999999999999999999999999998888888888899999999999999999999999999999998
Q ss_pred CC-cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-CchhHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy15604 649 GN-QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 726 (986)
Q Consensus 649 ~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~-~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~ 726 (986)
+. +... .....++++.|+.++.+.+ +.++..++|+|.+|+.... ....+++.|+++.|+.++.++++.++..++++
T Consensus 245 ~~~~~~~-~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPD-WSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCC-HHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCc-HHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 75 3333 4445689999999998877 6788899999999997754 35778888999999999999999999999999
Q ss_pred HHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhhH
Q psy15604 727 LRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQ 803 (986)
Q Consensus 727 L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~ 803 (986)
|+||+.... +.....|+++.|+.++.++++.++..|+|+|+|++.+++++++.+++
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--------------------- 381 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID--------------------- 381 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---------------------
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------
Confidence 999995432 33445699999999999999999999999999998887776664433
Q ss_pred HHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHH
Q psy15604 804 NYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCAL 883 (986)
Q Consensus 804 ~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l 883 (986)
.|+++.|.+. ..+.+++++..++.+|
T Consensus 382 ----------------------------------------------------~~~l~~L~~l--L~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 382 ----------------------------------------------------ANLIPPLVKL--LEVAEYKTKKEACWAI 407 (530)
T ss_dssp ----------------------------------------------------TTCHHHHHHH--HHHSCHHHHHHHHHHH
T ss_pred ----------------------------------------------------CCCHHHHHHH--HhcCCHHHHHHHHHHH
Confidence 3567777733 3457889999999999
Q ss_pred HHhhcCC-chHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhcccc------------chhhhhcCcHHH
Q psy15604 884 RHLTSRH-VESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQAN------------HAPLREYGAIHL 950 (986)
Q Consensus 884 ~~l~~~~-~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~~~~------------~~~~~~~~~~~~ 950 (986)
.|++.+. +..+..+..+ ..+++|.|.++|..+ +..++..++.+|.|+.....+ ...+.+.|.++.
T Consensus 408 ~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 9998753 3224444444 578999999999987 778999999999999875332 356778899999
Q ss_pred HHHHHHHHHHHHHhh
Q psy15604 951 LVILLNRAFTDTQRV 965 (986)
Q Consensus 951 l~~~l~~~~~~~~~~ 965 (986)
|..++...+.++++.
T Consensus 486 L~~L~~~~~~~v~~~ 500 (530)
T 1wa5_B 486 IFNCQQNENDKIYEK 500 (530)
T ss_dssp HHGGGGCSCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 999877666666554
No 21
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.4e-29 Score=286.55 Aligned_cols=366 Identities=17% Similarity=0.199 Sum_probs=287.9
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC-cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchH
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE-ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLL 199 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~ 199 (986)
.+|.|+.+|+++++.++..|+.+|.+++..+ .++..+.+.|+ ++.|+++|++ +++.++..|+++|.||+.+ ++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~-i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG-ICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTH-HHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCC-HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999999655 56778998876 6999999997 6899999999999999997 89999
Q ss_pred HHHhcCChHHHHHhhC-CCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc--------cC--------CHH
Q psy15604 200 AIFKSGGIPALVKLLS-SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG--------RN--------NVK 262 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~--------~~--------~~~ 262 (986)
.+++.|+||.|+++|. ++++++++.++.+|.|++.+ +..+..+.+ |+++.|+.++. +. ++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999965 778988998 99999999993 22 345
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhC-CCHHHHHHHHhcC-----ChHHHHHHHHHHHHHhhhCC-----CC--------
Q psy15604 263 FLAIVTDCLQILAYGNQESKLIILAS-QGPVELVRIMRSY-----DYEKLLWCTSRVLKVLSVCS-----SN-------- 323 (986)
Q Consensus 263 ~~~~a~~aL~~La~~~~~~~~~~~~~-g~v~~L~~ll~~~-----~~~~~~~~a~~aL~~Ls~~~-----~~-------- 323 (986)
+...++++|.+|+.+ ++++..+.+. |+++.|+.++++. .+....+.+..+|++|+... ..
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 666999999999986 8899999997 9999999999862 22336677788888886321 00
Q ss_pred --------------------------------------hHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccccc
Q psy15604 324 --------------------------------------KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKV 365 (986)
Q Consensus 324 --------------------------------------~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i 365 (986)
.+.+.+.|+++.++.+|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~----------------------- 294 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK----------------------- 294 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-----------------------
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-----------------------
Confidence 0111122223333332221
Q ss_pred ccccCCchHHHHHHHHHHHHHhhCh-hhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccc
Q psy15604 366 SLLFNEIENIQRVAAGLLCELAQDK-EGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPET 444 (986)
Q Consensus 366 ~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 444 (986)
+.++.+++.|+++|.|++... .....+ ....
T Consensus 295 ----~~~~~~~e~a~~aL~nl~~~~~~~~~~~-----------------------~~~~--------------------- 326 (457)
T 1xm9_A 295 ----SKKDATLEACAGALQNLTASKGLMSSGM-----------------------SQLI--------------------- 326 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTCSSSHHHHH-----------------------HHHH---------------------
T ss_pred ----cCCHHHHHHHHHHHHHhccCcCcchHHH-----------------------HHHH---------------------
Confidence 456788888888888887532 110000 0000
Q ss_pred hhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcc
Q psy15604 445 LEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE 524 (986)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 524 (986)
....+++|.|+++|.+++.+++..|+++|.+++.++
T Consensus 327 --------------------------------------------v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 327 --------------------------------------------GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp --------------------------------------------HTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred --------------------------------------------HHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 001566788888888888888899999999998876
Q ss_pred ccchhhhcccCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCC-CHhHHHHH
Q psy15604 525 ASRHAIMNSPQMVAALVHAISNSND-----LETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSP-VESVLFYA 597 (986)
Q Consensus 525 ~~~~~l~~~~~~i~~L~~lL~~~~~-----~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~-~~~v~~~a 597 (986)
..+..+ .. ++++.|+++|...+. +++...++++|.++.. +++....+.+.|+++.|+.+++++ ++++++.|
T Consensus 363 ~~~~~i-~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 363 LLHRVM-GN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp GGHHHH-HH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHH-HH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 655444 43 789999999976532 4788899999999987 677888899999999999999999 99999999
Q ss_pred HHHHHHhhcCCC
Q psy15604 598 ITTLHNLLLHQE 609 (986)
Q Consensus 598 ~~aL~nl~~~~~ 609 (986)
++.|.|+..+.+
T Consensus 441 ~~~L~~~~~~~~ 452 (457)
T 1xm9_A 441 RLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHTTSSSTT
T ss_pred HHHHHHHHcchh
Confidence 999999996654
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=7.4e-28 Score=282.13 Aligned_cols=404 Identities=16% Similarity=0.141 Sum_probs=325.2
Q ss_pred hcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC-CCchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhccChh
Q psy15604 203 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQE 280 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~aL~~La~~~~~ 280 (986)
..+.++.|+..|.+++++++..|+.+|.++.... ......+.+.|+++.|+.+|.+. ++.++..++++|.+++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3468999999999999999999999999997542 34556788899999999999986 899999999999999998887
Q ss_pred hHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccc
Q psy15604 281 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 360 (986)
Q Consensus 281 ~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~ 360 (986)
.+..+.+.|+++.|+.++++++.. +++.++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~-vr~~A~------------------------------------------------- 194 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVE-VKEQAI------------------------------------------------- 194 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHH-HHHHHH-------------------------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHH-HHHHHH-------------------------------------------------
Confidence 888888888888888888765433 444444
Q ss_pred cccccccccCCchHHHHHHHHHHHHHhhC-hhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccccccc
Q psy15604 361 AGTKVSLLFNEIENIQRVAAGLLCELAQD-KEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCL 439 (986)
Q Consensus 361 ~~~~i~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 439 (986)
.+|.+++.+ +..+..+...|+++
T Consensus 195 --------------------~aL~~l~~~~~~~~~~~~~~~~l~------------------------------------ 218 (530)
T 1wa5_B 195 --------------------WALGNVAGDSTDYRDYVLQCNAME------------------------------------ 218 (530)
T ss_dssp --------------------HHHHHHHTTCHHHHHHHHHTTCHH------------------------------------
T ss_pred --------------------HHHHHHhCCCccchHHHHHcCcHH------------------------------------
Confidence 444444432 23344444444444
Q ss_pred ccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy15604 440 MFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ 519 (986)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 519 (986)
.|+.++.+.++.++..|+++|.+
T Consensus 219 ---------------------------------------------------------~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 219 ---------------------------------------------------------PILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp ---------------------------------------------------------HHHHGGGSCCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHhccCCHHHHHHHHHHHHH
Confidence 44444444555666777777777
Q ss_pred hhhcc-ccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHH
Q psy15604 520 LSKKE-ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYA 597 (986)
Q Consensus 520 l~~~~-~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a 597 (986)
++... ........ .++++.|+.++.+. ++.++..++|+|.+++. .++....+++.|+++.|+.+|.++++.++..|
T Consensus 242 L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a 319 (530)
T 1wa5_B 242 LCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319 (530)
T ss_dssp HHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHH
Confidence 77664 32333333 38999999999765 79999999999999998 45667788889999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhH
Q psy15604 598 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 677 (986)
Q Consensus 598 ~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 677 (986)
+++|++++...+.....+.+.|+++.|+.++.++++.++..++|+|++++.++++....+++.++++.|+.++.+.+ ..
T Consensus 320 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~ 398 (530)
T 1wa5_B 320 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YK 398 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HH
T ss_pred HHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HH
Confidence 99999999877777777788999999999999999999999999999999877777777888899999999998877 66
Q ss_pred HHHHHHHHHHHhhcCC----CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc--------------cccc
Q psy15604 678 LLWCTSRVLKVLSVCS----SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT--------------KVDG 739 (986)
Q Consensus 678 ~~~~~~~~L~~Ls~~~----~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~--------------~~~~ 739 (986)
++..++|+|++++... .....+++.|+++.|+.++.++++.++..++++|.|+..... ....
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~ 478 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 478 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHH
Confidence 7889999999997753 344778889999999999999999999999999999984322 1233
Q ss_pred hhchHHHHHHHhccCChhhHHHHHHHHhhhccC
Q psy15604 740 LESLLQSLVQLLASQDINVITCAAGVTVCQVGG 772 (986)
Q Consensus 740 ~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g 772 (986)
..|.++.|..+..+++++++..|.++|.++...
T Consensus 479 ~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 479 KAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 458899999999999999999999999876543
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=3.9e-28 Score=279.19 Aligned_cols=392 Identities=18% Similarity=0.171 Sum_probs=323.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhh--ccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccchh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSK--KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLL 571 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~ 571 (986)
++.+++.++++++.++..|+..|+++.. .......++...++++.|+++|++.+++.++..++++|.+++. .++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 8899999999999999999999999854 2333455555448999999999876689999999999999998 557777
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhcCC
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~~ 650 (986)
.+++.|++|.|+.+|+++++.+++.|+++|++++.+.+..+..+.+.|+++.|+.++.+ +++.++..++|+|++++.+.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999998887788888889999999999996 68999999999999999865
Q ss_pred -cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q psy15604 651 -QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS-SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728 (986)
Q Consensus 651 -~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~-~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~ 728 (986)
+..+..+. .++++.|++++.+.+ +.++..++|+|.+++... .....+.+.|+++.|+.++.++++.++..++++|+
T Consensus 182 ~~~~~~~~~-~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 182 SPPPEFAKV-SPCLNVLSWLLFVSD-TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSCCCGGGT-GGGHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHHHHccCC-HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44443444 578999999998877 677889999999999864 34567788899999999999999999999999999
Q ss_pred Hhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcccccccccccCCchhhHHH
Q psy15604 729 NLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNY 805 (986)
Q Consensus 729 nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~~~ 805 (986)
|++.... +.....|+++.|+.++.++++.++..|+|+|+|++.|++++++.+++
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~----------------------- 316 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID----------------------- 316 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-----------------------
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------
Confidence 9996543 23345699999999999999999999999999999888776665433
Q ss_pred HHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHHHH
Q psy15604 806 LVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRH 885 (986)
Q Consensus 806 l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l~~ 885 (986)
.|+++.|.+ +..+.+++++..++.+|.|
T Consensus 317 --------------------------------------------------~~~l~~L~~--~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 317 --------------------------------------------------ANIFPALIS--ILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp --------------------------------------------------TTHHHHHHH--HHHHSCHHHHHHHHHHHHH
T ss_pred --------------------------------------------------CCCHHHHHH--HHhcCCHHHHHHHHHHHHH
Confidence 255666663 3335678999999999999
Q ss_pred hhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhcccc------------chhhhhcCcHHHHHH
Q psy15604 886 LTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQAN------------HAPLREYGAIHLLVI 953 (986)
Q Consensus 886 l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~~~~------------~~~~~~~~~~~~l~~ 953 (986)
++.+.. .+..+.. ...+++|.|.++|+.+ +..++..++.+|.|++..... ...+.+.|.++.|..
T Consensus 345 l~~~~~-~~~~~~l-~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 345 ATSGGS-AEQIKYL-VELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHCC-HHHHHHH-HHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHcCCC-HHHHHHH-HHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 987631 1333333 3678999999999987 778999999999999865432 356777888999999
Q ss_pred HHHHHHHHHHhhh
Q psy15604 954 LLNRAFTDTQRVS 966 (986)
Q Consensus 954 ~l~~~~~~~~~~~ 966 (986)
++...+.+++...
T Consensus 422 l~~~~~~~v~~~a 434 (450)
T 2jdq_A 422 LQSHENQEIYQKA 434 (450)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHH
Confidence 8777666665543
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=5e-27 Score=269.94 Aligned_cols=402 Identities=15% Similarity=0.114 Sum_probs=320.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhcc--CccchHHHHhc-CChHHHHHhhCCC-CHhHHHHHHHHHHHHhcCCCCch
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGLLAIFKS-GGIPALVKLLSSP-VESVLFYAITTLHNLLLHQEGSK 240 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~ 240 (986)
++.|++.|++ +++.++..|+..|.++.. .......+++. |++|.|+++|+++ ++.++..|+.+|.+++.++++..
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 5889998977 689999999999999754 23334556777 9999999999988 89999999999999997666677
Q ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhC
Q psy15604 241 MAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC 320 (986)
Q Consensus 241 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~ 320 (986)
..+.+.|+++.|+.+++++++.++..++.+|.+++..+++.+..+.+.|+++.|+.++++.....++..++.+|.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999988889999999999999999999754455899999999999854
Q ss_pred C--CChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhCh-hhHHHHH
Q psy15604 321 S--SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDK-EGAETIE 397 (986)
Q Consensus 321 ~--~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~ 397 (986)
. .....+. .++++.|+.++.++ ++.++..++.+|.+++.+. +....+.
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~----------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~ 231 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVS----------------------------DTDVLADACWALSYLSDGPNDKIQAVI 231 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccC----------------------------CHHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3 3323333 78999999888664 4456667777777776532 2222222
Q ss_pred hcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHH
Q psy15604 398 AEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHA 477 (986)
Q Consensus 398 ~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a 477 (986)
+
T Consensus 232 ~------------------------------------------------------------------------------- 232 (450)
T 2jdq_A 232 D------------------------------------------------------------------------------- 232 (450)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHH
Q psy15604 478 VVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGA 556 (986)
Q Consensus 478 ~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a 556 (986)
.+.++.+++++.++++.++..|+++|.+++..... ...++. .|+++.|+.++++. ++.++..+
T Consensus 233 --------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~vr~~a 296 (450)
T 2jdq_A 233 --------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSP-KESIKKEA 296 (450)
T ss_dssp --------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCS-SHHHHHHH
T ss_pred --------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCC-CHHHHHHH
Confidence 33466666666666777777788888888766543 334444 48999999999774 79999999
Q ss_pred HHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcC-CCCChHHHHHhCcHHHHHHhhcCCCHh
Q psy15604 557 VGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH-QEGSKMAVRLAGGLQKMVLLLGRNNVK 634 (986)
Q Consensus 557 ~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~v~~~g~v~~Lv~ll~~~~~~ 634 (986)
+++|.+++. +++....+.+.|++|.|+.+|+++++.++..|+|+|+|++.+ .+.....+.+.|+++.|+.++.++++.
T Consensus 297 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 376 (450)
T 2jdq_A 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHH
Confidence 999999997 666777888899999999999999999999999999999976 334455566789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCc-----------ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q psy15604 635 FLAIVTDCLQILAYGNQ-----------ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC 692 (986)
Q Consensus 635 v~~~a~~aL~~L~~~~~-----------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~ 692 (986)
++..++++|.+++...+ +....+.+.|+++.|..++.+++ ..++..+..++.++-..
T Consensus 377 v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 377 IVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHEN-QEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHH-HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCCc
Confidence 99999999999987422 12345677788888888876665 56777788888777543
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=1.1e-27 Score=259.39 Aligned_cols=272 Identities=20% Similarity=0.147 Sum_probs=234.0
Q ss_pred CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC----------CCHHHHHHHHHHHHHhhCCcc-chhhhh
Q psy15604 506 DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS----------NDLETTKGAVGTLHNLSHHRQ-GLLAIF 574 (986)
Q Consensus 506 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~----------~~~~~~~~a~~~L~~ls~~~~-~~~~i~ 574 (986)
+...+..|+++|.+++.++..+..+++. |+++.|+.+|... .++.+++.|+|+|.||+..++ ++..+.
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455668999999999998888898886 9999999999521 247899999999999998554 666665
Q ss_pred c-cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcC-CCCChHHHHHhCcHHHHHHhh-cCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 575 K-SGGIPALVKLLSSPVESVLFYAITTLHNLLLH-QEGSKMAVRLAGGLQKMVLLL-GRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 575 ~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~v~~~g~v~~Lv~ll-~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
. .|++|.|+.+|+++++++++.|+|+|+||+.. ++..+..+.+.|+++.|+++| ++.++.++..++++|+||+..++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 5 55599999999999999999999999999985 456889999999999999974 66789999999999999998666
Q ss_pred ccHHHHH-hCCChHHHHHHHhcCChh---HHHHHHHHHHHHhhc----CCCCchhHHhcCcHHHHHHhhCCCCHHHHHHH
Q psy15604 652 ESKLIIL-ASQGPVELVRIMRSYDYE---KLLWCTSRVLKVLSV----CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNC 723 (986)
Q Consensus 652 ~~~~~~~-~~~~~~~L~~ll~~~~~~---~~~~~~~~~L~~Ls~----~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a 723 (986)
+++..+. ..|+++.|+++|.+.+.. .+++.++|+|+||+. ++.++..+.+.|+++.|+.+|.+++..++.+|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 7788887 789999999999876543 577899999999986 67778999999999999999999999999999
Q ss_pred HHHHHHhhcc-cc--cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHH
Q psy15604 724 LWTLRNLSDA-GT--KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQ 778 (986)
Q Consensus 724 l~~L~nLs~~-~~--~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~ 778 (986)
+|+|+||+.. .. +.....|+++.|+.++++.++.+++.|+|+|+|++.+++++++
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999932 22 3456679999999999999999999999999999998877443
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=6.5e-27 Score=253.33 Aligned_cols=267 Identities=22% Similarity=0.231 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCC-----------CCHhHHHHHHHHHHHhhcCCCCChHHHHHh-
Q psy15604 551 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS-----------PVESVLFYAITTLHNLLLHQEGSKMAVRLA- 618 (986)
Q Consensus 551 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~- 618 (986)
..+..|+|+|.|++.+++++..+++.|++++|+.+|.. .++.++++|+|+|.||+.+.+..+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 44558999999999999999999999999999999952 246799999999999998877778777544
Q ss_pred CcHHHHHHhhcCCCHhHHHHHHHHHHHHhcC-CcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhc-CCCCc
Q psy15604 619 GGLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV-CSSNK 696 (986)
Q Consensus 619 g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~-~~~~~ 696 (986)
|++|.|+.+|++++++++..++|+|+||+.+ +++++..+.+.|+++.|+++|........++.++++|++|+. ++.++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5599999999999999999999999999985 567899999999999999986544336677889999999998 55777
Q ss_pred hhHH-hcCcHHHHHHhhCCCCH----HHHHHHHHHHHHhhc----ccc--cccchhchHHHHHHHhccCChhhHHHHHHH
Q psy15604 697 PAIV-EAGGMQALAMHLGHPSQ----RLVQNCLWTLRNLSD----AGT--KVDGLESLLQSLVQLLASQDINVITCAAGV 765 (986)
Q Consensus 697 ~~l~-~~g~~~~L~~ll~~~~~----~v~~~al~~L~nLs~----~~~--~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~ 765 (986)
..+. ..|+++.|+.++.++++ .++..++++|+||+. ... +.....|.++.|+.++++++..+++.|+|+
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 7777 78999999999988764 599999999999995 222 345567999999999999999999999999
Q ss_pred HhhhccCcHHHHHHHHhcCCcccccccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCC
Q psy15604 766 TVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQG 845 (986)
Q Consensus 766 L~ni~~g~~~~v~~l~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 845 (986)
|+|++.+++++.+.+
T Consensus 287 L~nLa~~~~~~~~~i----------------------------------------------------------------- 301 (354)
T 3nmw_A 287 LWNLSARNPKDQEAL----------------------------------------------------------------- 301 (354)
T ss_dssp HHHHTSSCHHHHHHH-----------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHH-----------------------------------------------------------------
Confidence 999887776655544
Q ss_pred CcccchhhhccCchHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCch
Q psy15604 846 FTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVE 892 (986)
Q Consensus 846 ~~~~~~~~~~~~g~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~~ 892 (986)
.+.|+++.|. .+..+.++.+++.|+.+|.|++.++|.
T Consensus 302 --------~~~G~i~~Lv--~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 302 --------WDMGAVSMLK--NLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp --------HHTTHHHHHH--TTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred --------HHCCCHHHHH--HHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4458888988 667788999999999999999998754
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=233.35 Aligned_cols=451 Identities=13% Similarity=0.103 Sum_probs=313.8
Q ss_pred HHHHHHHHHhc-ccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC
Q psy15604 139 SQAAMMVHQLS-KKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP 217 (986)
Q Consensus 139 ~~a~~~L~~la-~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~ 217 (986)
..++.++..+. -.|+....+.-..|+.+.+.+.+.+..+..+...++..|...|.+..+|..+ ..++++.|.+.+++
T Consensus 230 ~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~- 307 (778)
T 3opb_A 230 SIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV- 307 (778)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc-
Confidence 34445555544 3456666666666788888888876667777788888777777777776655 66788999999975
Q ss_pred CHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCC-HHHHHH
Q psy15604 218 VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQG-PVELVR 296 (986)
Q Consensus 218 ~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~-v~~L~~ 296 (986)
+.++..|+.+|+.+..........+. ...+.+.++|..+..+.+..+.+.|..++. +++.|..+++..+ ++.|+.
T Consensus 308 -~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~ 383 (778)
T 3opb_A 308 -EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLT 383 (778)
T ss_dssp -GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHH
Confidence 58899999999999855432222222 245667777777666668999999999988 5678888888765 999999
Q ss_pred HHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCH-------------HHHHHHHHHHhccccccc
Q psy15604 297 IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ-------------RLVQNCLWTLRNLSDAGT 363 (986)
Q Consensus 297 ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~-------------~~~~~~~~~L~~ls~~~~ 363 (986)
+++......+.+.++.+|.||+....+.... ...+..|..+...+.| .+...--..+......+.
T Consensus 384 llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e--~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~ 461 (778)
T 3opb_A 384 MIKSQKMTHCLYGLLVIMANLSTLPEEXXXX--XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISF 461 (778)
T ss_dssp HHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC--CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHhcCCCcccchh--hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHH
Confidence 9997444558999999999999765431110 0122233332221111 000100111222222334
Q ss_pred ccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchh---HHHHHHHHHHHHhhcc-cccccccc
Q psy15604 364 KVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEG---VEILIQGVHKIFKIHK-INIHRGCL 439 (986)
Q Consensus 364 ~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~---~~~~~~~~~al~~~~~-~~~~~~~~ 439 (986)
++.++.++++.+++.++++|.+++.++++|..++++|+++.|+.++.+.... .+..++.++ .++.. .++. .
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~AL--ArLlis~np~---~ 536 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRAL--TRMLIFTNPG---L 536 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHH--HHHHHTSCHH---H
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHH--HHHHhcCCHH---H
Confidence 4777788899999999999999999999999999999999999999887644 444444433 33221 1110 0
Q ss_pred ccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcC-CCH-----------
Q psy15604 440 MFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLND-EDQ----------- 507 (986)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~-~~~----------- 507 (986)
. +..+ . ..++++.|+.+|.. ++.
T Consensus 537 ~-----------------------------------------f~~~--~--~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 537 I-----------------------------------------FKKY--S--ALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp H-----------------------------------------SSSS--C--STTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred H-----------------------------------------cCCC--c--cccchHHHHHHcCCCCCcccccccccccc
Confidence 0 0000 0 03678888888872 211
Q ss_pred --HHHHHHHHHHHHhhhccc-----cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccch-hhhhccC--
Q psy15604 508 --VVVSQAAMMVHQLSKKEA-----SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSG-- 577 (986)
Q Consensus 508 --~~~~~a~~~L~~l~~~~~-----~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~~-- 577 (986)
-.+..|+.+|.|++..+. .+..++...|+++.|.++|.++ +..+++.|+++++||+.+++.. ..+...+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 237789999999998862 3677777448999999999764 7899999999999999988775 3554322
Q ss_pred ----ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHH-hCcHHHHHHhhcC--CCHhHHHHHHHHHHHHhc
Q psy15604 578 ----GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL-AGGLQKMVLLLGR--NNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 578 ----~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~-~g~v~~Lv~ll~~--~~~~v~~~a~~aL~~L~~ 648 (986)
.++.|+.++.+++.+++..|+|+|.|++...+.....+.+ .++++.++.++.. ++++++..++.++.||+.
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999997656554444444 4899999999998 899999999999999995
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=232.45 Aligned_cols=473 Identities=11% Similarity=0.009 Sum_probs=309.5
Q ss_pred HHHHHHHHhcCCChhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcHHHHH
Q psy15604 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELI 83 (986)
Q Consensus 4 ~~~lv~~l~~~~d~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~~l~ 83 (986)
++.+...+.+.++.+....++..|...+.+..+|..+.+ + .+++|.
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~-~---------------------------------~~~~L~ 302 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE-N---------------------------------YLQLLE 302 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH-H---------------------------------HHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH-h---------------------------------HHHHHH
Confidence 455666676667777767788888888888888888644 2 445555
Q ss_pred HHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCc
Q psy15604 84 KLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQ 163 (986)
Q Consensus 84 ~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~ 163 (986)
..++++ +.+..|+-+|+.+...-... ...+. ...+.+.++|.+++...+..|+..|..++.+++.|+.+++..+
T Consensus 303 ~~l~~~--~ir~lAavvL~KL~~~~~~~--~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~ 376 (778)
T 3opb_A 303 RSLNVE--DVQIYSALVLVKTWSFTKLT--CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNES 376 (778)
T ss_dssp HHTTSG--GGHHHHHHHHHHHTGGGTCT--TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHH
T ss_pred HHhccH--HHHHHHHHHHHHHhcCCCCC--cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHH
Confidence 555432 33445555554444321111 11111 1446677888887777799999999999999999999999988
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHH
Q psy15604 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 243 (986)
Q Consensus 164 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 243 (986)
+++.|+.+++...+..+...++.+|.|++..++..... ...+..|-.+.+...|+...... .+-.=....+-++..+
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e--~~~l~~Lk~~A~~~~p~~~~~d~-~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX--XXXXXXXXXXXXXXXPAADKVGA-EKAAKEDILLFNEKYI 453 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC--CC------------------CCT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh--hhhhhhhhhhccccCcccCcccc-cccchHHHHHHHHHHH
Confidence 89999999986567789999999999999985432111 11333333333322221111000 0000000001145677
Q ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChH--HHHHHHHHHHHHhhhCC
Q psy15604 244 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYE--KLLWCTSRVLKVLSVCS 321 (986)
Q Consensus 244 ~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~--~~~~~a~~aL~~Ls~~~ 321 (986)
.+.|+++.|+.++++.++..+..++++|.+|+. ++++|..+++.|++++|+.++.+.+.. ..+..|+.+|.++....
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999987 688999999999999999999987543 27888999999998654
Q ss_pred CChHHHHH---hccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCC--ch-HHHHHHHHHHHHHhhCh-----
Q psy15604 322 SNKPAIVE---AGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNE--IE-NIQRVAAGLLCELAQDK----- 390 (986)
Q Consensus 322 ~~~~~i~~---~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~--~~-~~~~~a~~~L~~l~~~~----- 390 (986)
+....+.. .|++++|+.+|..+... .+ .-+... -+ .-+..|+.+|.||+..+
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~--------------~~---~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E 595 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPV--------------DD---NPLHNDEQIKLTDNYEALLALTNLASSETSDGE 595 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSC--------------SS---CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCc--------------cc---ccccccccccHHHHHHHHHHHHHHhcCCcccch
Confidence 43222211 38999999998631000 00 000001 12 23668999999998654
Q ss_pred hhHHHHHhc-CCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCC
Q psy15604 391 EGAETIEAE-GATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTE 469 (986)
Q Consensus 391 ~~~~~l~~~-g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 469 (986)
+.|..++.. |+
T Consensus 596 ~~r~~Ii~~~ga-------------------------------------------------------------------- 607 (778)
T 3opb_A 596 EVCKHIVSTKVY-------------------------------------------------------------------- 607 (778)
T ss_dssp HHHHHHHHSHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHhcCH--------------------------------------------------------------------
Confidence 234444332 33
Q ss_pred CcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccc-hhhhccc-----CcHHHHHHh
Q psy15604 470 PSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR-HAIMNSP-----QMVAALVHA 543 (986)
Q Consensus 470 ~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~~-----~~i~~L~~l 543 (986)
++.+.+++.+++..+|..|++++.|++.++..+ +.+.... +.++.|+.+
T Consensus 608 -------------------------~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~L 662 (778)
T 3opb_A 608 -------------------------WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKL 662 (778)
T ss_dssp -------------------------HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHG
T ss_pred -------------------------HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHH
Confidence 455555555666667777777788887766543 3443221 137889999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhC-Cccchhhhhcc-CChHHHHHhcCC--CCHhHHHHHHHHHHHhhcCCC-----C-ChH
Q psy15604 544 ISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKS-GGIPALVKLLSS--PVESVLFYAITTLHNLLLHQE-----G-SKM 613 (986)
Q Consensus 544 L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~-~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~-----~-~~~ 613 (986)
+.. ++.++++.|+|+|.+++. ++.....+++. ++++.++.++++ ++++++..++.+++||+...+ . ...
T Consensus 663 l~s-~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~ 741 (778)
T 3opb_A 663 LQL-SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPL 741 (778)
T ss_dssp GGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHH
T ss_pred HcC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHH
Confidence 865 589999999999999975 77777888876 899999999988 899999999999999996322 1 222
Q ss_pred HHHHhCcHHHHHHhhcCC
Q psy15604 614 AVRLAGGLQKMVLLLGRN 631 (986)
Q Consensus 614 ~v~~~g~v~~Lv~ll~~~ 631 (986)
..........|.+.++++
T Consensus 742 ~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 742 LQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHSCHHHHHHHHHHHSSS
T ss_pred HhcChHHHHHHHHHHhCC
Confidence 221333455566666554
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.89 E-value=4.8e-22 Score=208.61 Aligned_cols=240 Identities=27% Similarity=0.342 Sum_probs=218.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccch
Q psy15604 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGL 570 (986)
Q Consensus 493 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~ 570 (986)
+.++.+++++++++++++..|+++|.+++.... .+..+++. |+++.|+.+|++. +++++..++++|.+++.. ++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHH
Confidence 458999999999999999999999999988776 56777765 9999999999775 799999999999999995 8889
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
..+.+.|+++.++.+|+++++.++..++++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|++|+.++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999888888888999999999999999999999999999999999987
Q ss_pred cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15604 651 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS-SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRN 729 (986)
Q Consensus 651 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~-~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~n 729 (986)
+..+..+.+.++++.|+.++.+++ +.++..++++|++++.+. .....+.+.|+++.|++++.++++.++..++++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 777788899999999999999877 678889999999998754 445788899999999999999999999999999999
Q ss_pred hhcccc
Q psy15604 730 LSDAGT 735 (986)
Q Consensus 730 Ls~~~~ 735 (986)
|+....
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 995443
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.88 E-value=2.7e-21 Score=202.82 Aligned_cols=241 Identities=24% Similarity=0.312 Sum_probs=218.6
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc-Ccch
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK-EASR 155 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~-~~~~ 155 (986)
|.++.|+.++++++.+.+..|..+|..+.. ..++.+..+.+.|+++.|+.+++++++.++..++.+|.+++.+ +..+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIAS--GPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 689999999999999988888888777765 2334777889999999999999999999999999999999988 7889
Q ss_pred hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhc
Q psy15604 156 HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLL 234 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 234 (986)
..+.+.|+ ++.|+.+|++ ++++++..|+.+|.+++. +++++..+.+.|+++.|++++.+++++++..++.+|.+++.
T Consensus 80 ~~~~~~~~-i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 80 KAIVDAGG-VEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTH-HHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCC-HHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99998875 6999999997 689999999999999995 58899999999999999999999999999999999999997
Q ss_pred CCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHH
Q psy15604 235 HQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVL 314 (986)
Q Consensus 235 ~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL 314 (986)
+++..+..+.+.|+++.|+.++.++++.++..++.+|.+++..+++.+..+.+.|+++.|++++++++. .++..+..+|
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS-EVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH-HHHHHHHHHH
Confidence 777777888999999999999999999999999999999999888899999999999999999998776 4899999999
Q ss_pred HHhhhCCC
Q psy15604 315 KVLSVCSS 322 (986)
Q Consensus 315 ~~Ls~~~~ 322 (986)
.+++....
T Consensus 237 ~~l~~~~~ 244 (252)
T 4hxt_A 237 ENIKSGGW 244 (252)
T ss_dssp HHHHHTCB
T ss_pred HHHHcCCC
Confidence 99986543
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.87 E-value=1.4e-21 Score=205.08 Aligned_cols=237 Identities=25% Similarity=0.329 Sum_probs=210.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhh-ccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccch
Q psy15604 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGL 570 (986)
Q Consensus 493 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~ 570 (986)
...+.+++.|++++++++..|+++|+++.. .+..+..++.. |+++.|+.+|++. +++++..++++|.+++. +++++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 448899999999999999999999987644 44456677775 9999999999876 69999999999999998 77889
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
..+++.|+++.|+.+|+++++.++..|+++|+|++.+.+.....+.+.|+++.|++++.++++.++..++|+|.+|+.++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999776655478888999999999999999999999999999999987
Q ss_pred cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy15604 651 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS-SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRN 729 (986)
Q Consensus 651 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~-~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~n 729 (986)
++....+.+.++++.|++++.+++ +.++..++++|++++... ..+..+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 778888889999999999999886 678889999999998654 445788899999999999999999999999999999
Q ss_pred hhc
Q psy15604 730 LSD 732 (986)
Q Consensus 730 Ls~ 732 (986)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 864
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.87 E-value=3.1e-21 Score=202.30 Aligned_cols=238 Identities=24% Similarity=0.326 Sum_probs=215.7
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcc-cCcch
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK-KEASR 155 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~-~~~~~ 155 (986)
..++.+..+|++++.+.+..|..+|..+... .++..+.+.+.|+++.|+.+|+++++.++..|+.+|.+++. ++..+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 5799999999999999999999988665542 45567788999999999999999999999999999999997 56889
Q ss_pred hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccch-HHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhc
Q psy15604 156 HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLL 234 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 234 (986)
..+.+.|+ ++.|+.+|++ +++.+++.|+.+|.+++.+++++ ..+.+.|+++.|+++|.++++.++..++.+|.+++.
T Consensus 90 ~~i~~~g~-i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 90 QAVIDAGA-LPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHTTH-HHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC-HHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99998875 6999999998 68999999999999999998888 899999999999999999999999999999999997
Q ss_pred CCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHH
Q psy15604 235 HQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVL 314 (986)
Q Consensus 235 ~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL 314 (986)
+++..+..+.+.|+++.|+.++.++++.++..++.+|.+|+..+++.+..+.+.|+++.|+.++++.+.+ ++..+..+|
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-v~~~A~~~L 246 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEAQEAL 246 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSH-HHHTHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 7777778888999999999999999999999999999999988898999999999999999999987765 888888999
Q ss_pred HHhhh
Q psy15604 315 KVLSV 319 (986)
Q Consensus 315 ~~Ls~ 319 (986)
.+|+.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88864
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=193.99 Aligned_cols=198 Identities=19% Similarity=0.185 Sum_probs=169.7
Q ss_pred CChHHHHHhcCCCCH--hHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 577 GGIPALVKLLSSPVE--SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 577 ~~i~~Lv~lL~~~~~--~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
-.+|.++++|+++++ +++..|+++|.+++..+++.+..+.+.|++|+|+++|+++++.++..++|+|+||+.++++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999999988 899999999999998888899999999999999999999999999999999999999888999
Q ss_pred HHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhC----------------CCCHH
Q psy15604 655 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG----------------HPSQR 718 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~----------------~~~~~ 718 (986)
..+.+.|+++.|+++|++..+..+++.++.+||+|+..+.++..+++ ++++.|+.++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998643367888999999999999999988887 46899988652 13579
Q ss_pred HHHHHHHHHHHhhccc----ccccchhchHHHHHHHhccC----ChhhHHHHHHHHhhhccCcHHHHHHHHhcCCcc
Q psy15604 719 LVQNCLWTLRNLSDAG----TKVDGLESLLQSLVQLLASQ----DINVITCAAGVTVCQVGGVEALVQTIVNAGDRE 787 (986)
Q Consensus 719 v~~~al~~L~nLs~~~----~~~~~~~~~l~~L~~ll~~~----~~~i~~~a~~~L~ni~~g~~~~v~~l~~~~~~~ 787 (986)
++.++.+||+|||... ..++...|+++.|+.++++. +++-+ ..|+++|+|+|++|+.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k------------~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDK------------ATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCH------------HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhH------------HHHHHHHHHHHHHhhh
Confidence 9999999999999533 23555679999999999752 22222 5688899999998874
No 34
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.84 E-value=2e-18 Score=214.33 Aligned_cols=615 Identities=14% Similarity=0.119 Sum_probs=385.7
Q ss_pred CCChhhHHHHHhHHHHHHHhcCCCcchhHH---HhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCch
Q psy15604 88 DEDQDDADLATRAIPELIKLLNDEDQDDAD---LATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQM 164 (986)
Q Consensus 88 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i---~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~ 164 (986)
+.+...|..|+-.|.+... . .+..+ .....-+.++..+.++++.+|..++.++..++..+.. . .-+.+
T Consensus 59 ~~~~~vR~~a~~~Lkn~i~---~--~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~---~wp~l 129 (852)
T 4fdd_A 59 SEDEPTRSLSGLILKNNVK---A--HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-Q---NWPDL 129 (852)
T ss_dssp TSCHHHHHHHHHHHHHHTT---T--SGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-T---TCTTH
T ss_pred CCChHHHHHHHHHHHHHHH---H--ccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-c---ccHHH
Confidence 3455666666655544432 1 11111 1122335566777888999999999999999976521 1 22457
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHH-H---HhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCc
Q psy15604 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLA-I---FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGS 239 (986)
Q Consensus 165 i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~-i---~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 239 (986)
++.|+..+.+ .+..+++.++.+|..++.. ++.... . .-...++.+++.++++++.++..|+.+|.++....+
T Consensus 130 l~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~-- 206 (852)
T 4fdd_A 130 LPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT-- 206 (852)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--
Confidence 8999998887 6889999999999999876 322110 0 012467788888899999999999999998874432
Q ss_pred hHHHH--HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHh
Q psy15604 240 KMAVR--LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317 (986)
Q Consensus 240 ~~~i~--~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~L 317 (986)
..+. -...++.++..+.++++.++..++.+|..++...++.-.... .+.++.++.++++.++ .++..+...+..+
T Consensus 207 -~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~-~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 -QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDE-NVALEACEFWLTL 283 (852)
T ss_dssp -HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSH-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcH-HHHHHHHHHHHHH
Confidence 1111 124678888888888999999999999999875443211111 1356777777776554 4888888888777
Q ss_pred hhCCCChHHHH--HhccHHHHHHHhC-----------C-----------CCHHHHHHHHHHHhccccccc----------
Q psy15604 318 SVCSSNKPAIV--EAGGMQALAMHLG-----------H-----------PSQRLVQNCLWTLRNLSDAGT---------- 363 (986)
Q Consensus 318 s~~~~~~~~i~--~~g~l~~L~~ll~-----------~-----------~~~~~~~~~~~~L~~ls~~~~---------- 363 (986)
+.....+..+. -...++.++..+. + ..-.++..+..+|..++...+
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~ 363 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL 363 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 65432222111 1134566666652 2 111235556666666544322
Q ss_pred ccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccccccccccc
Q psy15604 364 KVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPE 443 (986)
Q Consensus 364 ~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 443 (986)
...++.+.+..++..|+.+|+.++......-.-.-.+.++.++.++.+++..++..++.+++-+ +.... .
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l--~~~~~--------~ 433 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY--AHWVV--------S 433 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT--HHHHH--------H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--HHHhc--------c
Confidence 1455667889999999999999986442111111235688899999988888877666554211 10000 0
Q ss_pred chhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhc
Q psy15604 444 TLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK 523 (986)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 523 (986)
..........++.+++.+.++++.++..|+++|.+++..
T Consensus 434 -----------------------------------------~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 434 -----------------------------------------QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp -----------------------------------------SCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------chHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 000000123378888889999999999999999999765
Q ss_pred ccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--Ccc-chhhhhccCChHHHH---HhcCCCCHhHHHH
Q psy15604 524 EAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQ-GLLAIFKSGGIPALV---KLLSSPVESVLFY 596 (986)
Q Consensus 524 ~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~-~~~~i~~~~~i~~Lv---~lL~~~~~~v~~~ 596 (986)
... ....+ +++++.|+..++.. +......+..++..++. .+. .....+ ...+|.++ ..+.+++++++ .
T Consensus 473 ~~~~l~~~l--~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~~~~~~~~~~~~~-~~l~p~l~~~~~~l~d~~~~~~-~ 547 (852)
T 4fdd_A 473 ACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLF-P 547 (852)
T ss_dssp HGGGGGGGH--HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHGGGGCCHHHH-HHHHHHHHHHHHHSCTTCTTHH-H
T ss_pred hhHhhHhHH--HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhhhhhccHHHH-HHHHHHHHHHHHhcccccHHHH-H
Confidence 432 23333 36788888888654 34444455566666653 111 111111 23455555 34456666664 6
Q ss_pred HHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhc-----------------CCCHhHHHHHHHHHHHHhcCC-cccHHHH
Q psy15604 597 AITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLG-----------------RNNVKFLAIVTDCLQILAYGN-QESKLII 657 (986)
Q Consensus 597 a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~-----------------~~~~~v~~~a~~aL~~L~~~~-~~~~~~~ 657 (986)
++.++..++..... ....+. ..++.++.++. .++..++..+.+++..++..- .+....+
T Consensus 548 ~~~~l~~i~~~~g~~~~~~~~--~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~ 625 (852)
T 4fdd_A 548 LLECLSSVATALQSGFLPYCE--PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV 625 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHh
Confidence 77777777754221 221111 22333333332 125668888899999998743 3333344
Q ss_pred HhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-CchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-
Q psy15604 658 LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT- 735 (986)
Q Consensus 658 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~-~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~- 735 (986)
...+.++.+...+.+++ ..++..+.+++..++..-. .-...+. ..++.+...+..+.+.++.+++|+++.++....
T Consensus 626 ~~~~~~~~l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 626 ARSNILTLMYQCMQDKM-PEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp HTCCHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred cCCcHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 45677888888887766 6688899999999874322 1122222 267888888888889999999999999983322
Q ss_pred -cccchhchHHHHHHHhccC--ChhhHHHHHHHHhhhccCcHHHH
Q psy15604 736 -KVDGLESLLQSLVQLLASQ--DINVITCAAGVTVCQVGGVEALV 777 (986)
Q Consensus 736 -~~~~~~~~l~~L~~ll~~~--~~~i~~~a~~~L~ni~~g~~~~v 777 (986)
-......+++.|+.+++++ +..+++.++.+|+.+....++.+
T Consensus 704 ~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 704 EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence 2344569999999999876 45799999999997766555433
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=4e-20 Score=194.52 Aligned_cols=184 Identities=20% Similarity=0.184 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHH-hcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHh
Q psy15604 549 DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVK-LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL 627 (986)
Q Consensus 549 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l 627 (986)
+.+-+..|+..|.+++...++...+.+.|++|+|+. +|+++++.++.+|+|+|+|++.+++..++.+.+.|++++|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 346788899999999998888888999999999999 9999999999999999999999998899999999999999999
Q ss_pred hcC-CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCCchhHHhcCcH
Q psy15604 628 LGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-SSNKPAIVEAGGM 705 (986)
Q Consensus 628 l~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-~~~~~~l~~~g~~ 705 (986)
|++ +++.++..++|+|+|+++++++....+.+.++++.|+.+|++.+ ..++..++|+|++|+.+ ++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 996 48899999999999999988888888999999999999999887 67778999999999876 4456889999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q psy15604 706 QALAMHLGHPSQRLVQNCLWTLRNLSDA 733 (986)
Q Consensus 706 ~~L~~ll~~~~~~v~~~al~~L~nLs~~ 733 (986)
+.|+.+|.++++.++..++++|+||+..
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988753
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=1.2e-17 Score=198.80 Aligned_cols=575 Identities=14% Similarity=0.042 Sum_probs=385.2
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
.+..++..+++++.+.+..|..+|..+........ .....+|.|...+ +++++++..++..|+.+...-... .
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~-----~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-~ 83 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVER-----TRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-E 83 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH-----HHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG-G
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH-----HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH-H
Confidence 47888999999999999999998877765321111 1122455565554 667899999999999877541111 1
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQE 237 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 237 (986)
.. ..+++.|..++.+ ++..+|..|+.+|.+++..-... .+..-.+|.+..+..+++...+..++.++..++...+
T Consensus 84 ~~--~~ll~~L~~l~~~-~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 YV--HCLLPPLESLATV-EETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GG--GGGHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred HH--HHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 11 2256776665555 68999999999999998762211 1223356777777788888899999999999884433
Q ss_pred CchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHh
Q psy15604 238 GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317 (986)
Q Consensus 238 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~L 317 (986)
. .. ....++.+..++.++++.++..++.+|..++...+. .......++.+..+++..++. ++..+..+|..+
T Consensus 159 ~---~~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~-vr~~a~~~l~~l 230 (588)
T 1b3u_A 159 S---AV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDS-VRLLAVEACVNI 230 (588)
T ss_dssp H---HH-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHH-HHTTHHHHHHHH
T ss_pred H---HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHH
Confidence 1 12 234677888888889999999999999999763221 112345677888888776654 888888888887
Q ss_pred hhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHH
Q psy15604 318 SVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIE 397 (986)
Q Consensus 318 s~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 397 (986)
+.... ........++.+..++.++ +..++..++.+|..++..... ...
T Consensus 231 ~~~~~--~~~~~~~~~~~l~~~~~d~----------------------------~~~vR~~a~~~l~~l~~~~~~--~~~ 278 (588)
T 1b3u_A 231 AQLLP--QEDLEALVMPTLRQAAEDK----------------------------SWRVRYMVADKFTELQKAVGP--EIT 278 (588)
T ss_dssp HHHSC--HHHHHHHTHHHHHHHHTCS----------------------------SHHHHHHHHHTHHHHHHHHCH--HHH
T ss_pred HHhCC--HHHHHHHHHHHHHHHccCC----------------------------CHHHHHHHHHHHHHHHHHhCc--ccc
Confidence 75332 1223344666666666553 445666677777666532110 112
Q ss_pred hcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHH
Q psy15604 398 AEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHA 477 (986)
Q Consensus 398 ~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a 477 (986)
....++.+..++.+.+..++..+..+++-+ ... .+. ... .
T Consensus 279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~--------~~~--------------------------~~~-~--- 318 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEF--CEN--------LSA--------------------------DCR-E--- 318 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHH--HHT--------SCT--------------------------TTH-H---
T ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHH--------hCh--------------------------hhh-h---
Confidence 234678888999888877777655444111 100 000 000 0
Q ss_pred HHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHH
Q psy15604 478 VVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAV 557 (986)
Q Consensus 478 ~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~ 557 (986)
.......+|.+..+++++++.++..++.+|..++..-... ... +.+++.+..++++ .+++++..++
T Consensus 319 ----------~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~--~~l~p~l~~~l~d-~~~~Vr~~a~ 384 (588)
T 1b3u_A 319 ----------NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD-NTI--EHLLPLFLAQLKD-ECPEVRLNII 384 (588)
T ss_dssp ----------HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH-HHH--HHTHHHHHHHHTC-SCHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh-HHH--HHHHHHHHHHhCC-CchHHHHHHH
Confidence 0001233677888899999999999999998886532211 111 2577888888865 4789999999
Q ss_pred HHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHH
Q psy15604 558 GTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLA 637 (986)
Q Consensus 558 ~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~ 637 (986)
.+|..+...-.. . ......+|.+..++++++..++..++.++..++...... ......++.+..++.+++..++.
T Consensus 385 ~~l~~l~~~~~~-~-~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 385 SNLDCVNEVIGI-R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp TTCHHHHHHSCH-H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHhcCH-H-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHH
Confidence 888888652110 0 112346788888999999999999999999988532211 00123567888889999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCH
Q psy15604 638 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ 717 (986)
Q Consensus 638 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~ 717 (986)
.++.++..++....+ .......++.+..++.+.+ ..++..+++++..++..-. ........++.|...+.++++
T Consensus 460 ~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 460 AATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPN-YLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSC-HHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCc
Confidence 999999999863211 1122346677777766655 5677788888888865311 112334578899999999999
Q ss_pred HHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 718 RLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 718 ~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
.++..++++|+.+...-........+++.|..++.+.|+++|..|++++..+
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999999999854332222357788888888899999999999999854
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.83 E-value=1e-19 Score=184.76 Aligned_cols=197 Identities=25% Similarity=0.335 Sum_probs=180.1
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCCh
Q psy15604 534 PQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK 612 (986)
Q Consensus 534 ~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 612 (986)
.+..+.|+.+|+++ +++++..|+++|.+++. +++.+..+++.|+++.|+.+|+++++.++..|+++|+|++.+.+..+
T Consensus 11 ~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 11 GSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp --CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 37788999999765 89999999999999996 67888899999999999999999999999999999999998888888
Q ss_pred HHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q psy15604 613 MAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC 692 (986)
Q Consensus 613 ~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~ 692 (986)
..+.+.|+++.|+.+++++++.++..++|+|+||+.++++....+.+.++++.|++++.+++ ..++..++++|++++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999887777788899999999999999886 67888999999999887
Q ss_pred -CCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15604 693 -SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 732 (986)
Q Consensus 693 -~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~ 732 (986)
+..+..+.+.|+++.|+.++.++++.++..|+++|++|++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 5566888899999999999999999999999999999974
No 38
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=7.8e-17 Score=191.79 Aligned_cols=532 Identities=12% Similarity=0.043 Sum_probs=358.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHH
Q psy15604 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 202 (986)
Q Consensus 123 i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 202 (986)
+..|+..+++++..+|..|+..+..++..-... .... .+++.|...+ .++++++..++..|..+...-.... .
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~--~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~--~ 84 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRS--ELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPE--Y 84 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHH--THHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGG--G
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHH--HHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHH--H
Confidence 677899999999999999999998887532111 1111 1345555433 3578999999999998875421111 1
Q ss_pred hcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhH
Q psy15604 203 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 282 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~ 282 (986)
....++.|..++.++++.++..|+.+|.+++...+. .......++.+..+..++++..+..++.++..++..-+..
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~- 160 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA- 160 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH-
Confidence 234677788888888999999999999999955432 1222345666777777778888888888898887532211
Q ss_pred HHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccc
Q psy15604 283 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG 362 (986)
Q Consensus 283 ~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~ 362 (986)
.....++.+..++..+++. ++..++.+|..++..... .......++.+..++.++
T Consensus 161 ---~~~~l~~~l~~l~~d~~~~-VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~------------------- 215 (588)
T 1b3u_A 161 ---VKAELRQYFRNLCSDDTPM-VRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDE------------------- 215 (588)
T ss_dssp ---HHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCS-------------------
T ss_pred ---HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCC-------------------
Confidence 1123457777777766655 888899999888754332 222345566676666553
Q ss_pred cccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccc
Q psy15604 363 TKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFP 442 (986)
Q Consensus 363 ~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 442 (986)
++.++..|+.+|..++..-.. .......++.+..++.+.+..++..++.+++.+ ..
T Consensus 216 ---------~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l--~~----------- 271 (588)
T 1b3u_A 216 ---------QDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL--QK----------- 271 (588)
T ss_dssp ---------CHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHH--HH-----------
T ss_pred ---------cHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH--HH-----------
Confidence 445666666666666532110 011223677788888877777777665544111 00
Q ss_pred cchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy15604 443 ETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK 522 (986)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 522 (986)
.+. ........++.+.++++++++.++..|+.+|..++.
T Consensus 272 -----------------------~~~------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 272 -----------------------AVG------------------PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp -----------------------HHC------------------HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred -----------------------HhC------------------cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 000 000012347888899999999999999999999876
Q ss_pred ccccc--h-hhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHH
Q psy15604 523 KEASR--H-AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAIT 599 (986)
Q Consensus 523 ~~~~~--~-~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~ 599 (986)
.-... . ... +.+++.+..++++ .++.++..++++|..++..-.. .......+|.+..++++++++++..++.
T Consensus 311 ~~~~~~~~~~~~--~~l~p~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~ 385 (588)
T 1b3u_A 311 NLSADCRENVIM--SQILPCIKELVSD-ANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIIS 385 (588)
T ss_dssp TSCTTTHHHHHH--HTHHHHHHHHHTC-SCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHT
T ss_pred HhChhhhhhHHH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 54321 0 112 2678888888765 4789999999999988752110 1112346788999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHH
Q psy15604 600 TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLL 679 (986)
Q Consensus 600 aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 679 (986)
+|..++..... .. .....+|.+..++.+++..++..++.++..++..-... +.....++.+...+.+.+ ..++
T Consensus 386 ~l~~l~~~~~~--~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~-~~Vr 458 (588)
T 1b3u_A 386 NLDCVNEVIGI--RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHV-YAIR 458 (588)
T ss_dssp TCHHHHHHSCH--HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSS-HHHH
T ss_pred HHHHHHHhcCH--HH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCc-HHHH
Confidence 99988854321 11 12456788888888889999999999999987521110 111124566777777666 6688
Q ss_pred HHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhH
Q psy15604 680 WCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVI 759 (986)
Q Consensus 680 ~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~ 759 (986)
..++.++..+...... .......++.|..++.+++..++..++++++.++..-........+++.+...++++++++|
T Consensus 459 ~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr 536 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR 536 (588)
T ss_dssp HHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHH
Confidence 8889999888654221 12234577888888888899999999999999985332222345788999999999999999
Q ss_pred HHHHHHHhhh
Q psy15604 760 TCAAGVTVCQ 769 (986)
Q Consensus 760 ~~a~~~L~ni 769 (986)
..++++|+.+
T Consensus 537 ~~a~~~l~~l 546 (588)
T 1b3u_A 537 FNVAKSLQKI 546 (588)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999843
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.81 E-value=1.1e-18 Score=177.05 Aligned_cols=199 Identities=25% Similarity=0.306 Sum_probs=179.6
Q ss_pred HhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcc-cCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-c
Q psy15604 118 LATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-R 195 (986)
Q Consensus 118 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~ 195 (986)
...|..+.|+.+|+++++.++..|+.+|.+++. ++..+..+.+.|+ ++.|+++|++ +++.++..|+++|.+++.. +
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~-i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGA-LPALVQLLSS-PNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH-HHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC-HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence 346788999999999999999999999999994 5678888888875 7999999998 5899999999999999965 7
Q ss_pred cchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q psy15604 196 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275 (986)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La 275 (986)
+++..+++.|+++.|+.+|+++++.++..|+.+|.|++.++++.+..+.+.|+++.|+++++++++.++..++.+|.+++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999877777788889999999999999999999999999999999
Q ss_pred ccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Q psy15604 276 YGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 276 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~ 319 (986)
..+++.+..+.+.|+++.|++++.+++.. +++.+..+|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHH-HHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHhc
Confidence 98899999999999999999999987655 88889999988864
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=4.1e-17 Score=202.44 Aligned_cols=579 Identities=13% Similarity=0.063 Sum_probs=353.3
Q ss_pred ccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHh--cCCCHHHHHHHHHHHHhhccC--ccchHHHHhcCC
Q psy15604 131 NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS--NSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGG 206 (986)
Q Consensus 131 ~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~--~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~ 206 (986)
.++|..+|..|-..|..+...+ ++...|..++. .+.++.+|..|+..|.|.... ...... .+...
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~-~~~~i 91 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQYP----------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNG-VTDFI 91 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSH----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHH-HHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHH-HHHHH
Confidence 4678899999988887765433 34456667776 457899999999999988653 110000 11123
Q ss_pred hHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHH
Q psy15604 207 IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIIL 286 (986)
Q Consensus 207 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~ 286 (986)
-+.+++.|.++++.++..++.++..++..+.... -.+.++.|+..+.+.++..+..+..+|..++...+.. +.
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~ 164 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQN----WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LD 164 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hc
Confidence 3567777888889999999999999996542111 1346888999999888999999999999887532211 11
Q ss_pred h-------CCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHH--HhccHHHHHHHhCCCCHHHHHHHHHHHhc
Q psy15604 287 A-------SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIV--EAGGMQALAMHLGHPSQRLVQNCLWTLRN 357 (986)
Q Consensus 287 ~-------~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~--~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ 357 (986)
. ...++.+++++++.+. .++..++.+|..+..... ..+. -...++.+...+.+++++++..+.++|..
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~-~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSP-KIRSHAVACVNQFIISRT--QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVM 241 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSH-HHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1 1235666666666554 488888888877654322 1221 12567888888899999999999999988
Q ss_pred ccccccc-------------cccccCCchHHHHHHHHHHHHHhhChhhHHHHHh--cCCcHHHHHHhccCchhHHHHHHH
Q psy15604 358 LSDAGTK-------------VSLLFNEIENIQRVAAGLLCELAQDKEGAETIEA--EGATAPLTDLLHSRNEGVEILIQG 422 (986)
Q Consensus 358 ls~~~~~-------------i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~l~~Lv~ll~~~~~~~~~~~~~ 422 (986)
+....+. +..+.+.++.++..|+..+..++..+..++.+.. ...++.++..+....+...
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~----- 316 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII----- 316 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHH-----
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHH-----
Confidence 8654321 3455677889999999999999876544432211 1234444444432211110
Q ss_pred HHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHh
Q psy15604 423 VHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLL 502 (986)
Q Consensus 423 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll 502 (986)
++. ....++..++. .. .... ++ .....++..+..... ..+....++.+...+
T Consensus 317 ---~~~---------~d~~ed~~~dd--~~---~~~~----vr------~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l 368 (852)
T 4fdd_A 317 ---LLK---------GDVEGGSGGDD--TI---SDWN----LR------KCSAAALDVLANVYR-DELLPHILPLLKELL 368 (852)
T ss_dssp ---HHH---------C-----------------CCCC----HH------HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHH
T ss_pred ---Hhc---------CCccccccccc--cc---ccch----HH------HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHh
Confidence 000 00000000000 00 0000 00 000011111111111 111123467777788
Q ss_pred cCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccchhhhhccCChH
Q psy15604 503 NDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIP 580 (986)
Q Consensus 503 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~ 580 (986)
.++++.+|..|+.+|+.++..... ..... +++++.++..+++. ++.++..++|++.+++.. ........-.+.++
T Consensus 369 ~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 445 (852)
T 4fdd_A 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 899999999999999999876542 22222 36888899988654 899999999999999862 11111112245678
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh------------
Q psy15604 581 ALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA------------ 647 (986)
Q Consensus 581 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~------------ 647 (986)
.++..+.++++.++..|+++|.+++..... ....+ .+.++.|+.+++..+.+....+..++..++
T Consensus 446 ~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~ 523 (852)
T 4fdd_A 446 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY 523 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHH
Confidence 888999999999999999999999865332 11111 234455555555443333333333333332
Q ss_pred ---------------------------------cCCcccHHHHHhCCChHHHHHHHhcC----------------ChhHH
Q psy15604 648 ---------------------------------YGNQESKLIILASQGPVELVRIMRSY----------------DYEKL 678 (986)
Q Consensus 648 ---------------------------------~~~~~~~~~~~~~~~~~~L~~ll~~~----------------~~~~~ 678 (986)
..-...-..... ...+.++.+++.. .+...
T Consensus 524 ~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~-~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~ 602 (852)
T 4fdd_A 524 IQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 602 (852)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchH
Confidence 210000000000 1122233333210 12345
Q ss_pred HHHHHHHHHHhhcCC--CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-c-ccchhchHHHHHHHhccC
Q psy15604 679 LWCTSRVLKVLSVCS--SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-K-VDGLESLLQSLVQLLASQ 754 (986)
Q Consensus 679 ~~~~~~~L~~Ls~~~--~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~-~-~~~~~~~l~~L~~ll~~~ 754 (986)
+..+.+++..++..- .....+.+.+.++.+..++.++++.++..+.+++++++.... + ......+++.+...+...
T Consensus 603 ~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~ 682 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 682 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc
Confidence 666777777775432 222344456889999999999999999999999999994333 2 233457888899999888
Q ss_pred ChhhHHHHHHHHhhh
Q psy15604 755 DINVITCAAGVTVCQ 769 (986)
Q Consensus 755 ~~~i~~~a~~~L~ni 769 (986)
++.++..|+|+++.+
T Consensus 683 ~~~v~~~a~~alg~i 697 (852)
T 4fdd_A 683 FISVCNNATWAIGEI 697 (852)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 889999999999854
No 41
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=177.25 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=169.8
Q ss_pred cHHHHHHHhcCCCh--hhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcc-cCcc
Q psy15604 78 AIPELIKLLNDEDQ--DDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK-KEAS 154 (986)
Q Consensus 78 ~i~~l~~ll~~~~~--~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~-~~~~ 154 (986)
.++.++++|++++. +.+..|+.+|..++. .+++++..+.+.|+||.|+.+|+++++.++..|+.+|.||+. ++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~--~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECF--QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHH--HCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHc--CCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 69999999999988 777778887777664 355677788999999999999999999999999999999997 5789
Q ss_pred hhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhC----------------CCC
Q psy15604 155 RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS----------------SPV 218 (986)
Q Consensus 155 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~----------------~~~ 218 (986)
+..|.+.|| +++|+++|+++.+.++++.|+.+|++|+..++++..+++. ++|+|+.++. ..+
T Consensus 87 k~~I~~~Ga-I~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNG-VPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCC-HHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999986 6999999986578999999999999999999999999875 6999998763 126
Q ss_pred HhHHHHHHHHHHHHhcCCCCchHHHHHc-CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhc
Q psy15604 219 ESVLFYAITTLHNLLLHQEGSKMAVRLA-GGLQKMVLLLGR------NNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 219 ~~~~~~a~~~L~~L~~~~~~~~~~i~~~-g~i~~L~~ll~~------~~~~~~~~a~~aL~~La~ 276 (986)
++++.+|+.+|.||+..+++.|+.+.+. |.|+.|+.+++. .+.+.++.+..+|.+|++
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 6899999999999997777899999876 568999999975 246788999999999986
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=7.6e-18 Score=177.16 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=167.3
Q ss_pred HHhHHHHHHHhcCCCcchhHHHhCCCHHHHHH-HHccCCHHHHHHHHHHHHHhccc-CcchhHhhhCCchHHHHHHHHhc
Q psy15604 97 ATRAIPELIKLLNDEDQDDADLATRAIPELIK-LLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISN 174 (986)
Q Consensus 97 a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~~~~i~~Lv~lL~~ 174 (986)
...++..|..++...++...+...|++|.|+. +|+++++.++..|+.+|++++.+ +..+..+.+.|+ +++|+.+|++
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~-l~~Ll~LL~~ 135 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGA-LRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC-HHHHHHHHcc
Confidence 34566677777777777888899999999999 99999999999999999999976 468888988876 6999999997
Q ss_pred CCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHH
Q psy15604 175 SNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMV 253 (986)
Q Consensus 175 ~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~ 253 (986)
+++..+++.|+++|++++.+ +.....+.+.|++|.|+.+|+++++.++..|+.+|.+++.++++.+..+.+.|+++.|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 56899999999999999987 67778899999999999999999999999999999999988888899999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHhccChhhHHHH
Q psy15604 254 LLLGRNNVKFLAIVTDCLQILAYGNQESKLII 285 (986)
Q Consensus 254 ~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~ 285 (986)
.+|.++++.++..++.+|.+|+...+......
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 99999999999999999999998755444433
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.72 E-value=5.6e-14 Score=175.22 Aligned_cols=624 Identities=8% Similarity=0.012 Sum_probs=385.5
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHhcccC--cc
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE-DQVVVSQAAMMVHQLSKKE--AS 154 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~la~~~--~~ 154 (986)
.-..++..+.+++...+..+..++..++........+. ..++.|+..+.++ ++.++..++.++..++..- ..
T Consensus 96 ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~-----~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~ 170 (861)
T 2bpt_A 96 IKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS 170 (861)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhh
Confidence 34567777888888888888888877776321111222 2467788888888 9999999999999988642 21
Q ss_pred h--hHhhhCCchHHHHHHHHhcCC-CHHHHHHHHHHHHhhccC-ccch-HHHHhcCChHHHHHhhCCCCHhHHHHHHHHH
Q psy15604 155 R--HAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHH-RQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTL 229 (986)
Q Consensus 155 ~--~~i~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~~ls~~-~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 229 (986)
+ .... ..+++.+...+.+.+ +..+|..|+.+|.++... ..+- ........++.|...+.+++++++..++.+|
T Consensus 171 ~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 171 QALVSSS--NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp STTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 1111 124566677777632 789999999999987543 1110 0001122566777788888999999999999
Q ss_pred HHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChh------------------hHHHHHhCCCH
Q psy15604 230 HNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE------------------SKLIILASQGP 291 (986)
Q Consensus 230 ~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~------------------~~~~~~~~g~v 291 (986)
..++...+..-........++.+...+.+.++.++..+..++..++..... .+. . -...+
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~il 326 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS-S-IKDVV 326 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH-H-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHH-H-HHHHH
Confidence 999854432222222125667777778888889999999999888653111 011 1 12356
Q ss_pred HHHHHHHhcCC------hHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc--
Q psy15604 292 VELVRIMRSYD------YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-- 363 (986)
Q Consensus 292 ~~L~~ll~~~~------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~-- 363 (986)
+.++..+...+ ...++..+..+|..++..... .+ -...++.+.+.+.+.+.+.+..++++++.++....
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 403 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV 403 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH
Confidence 67777776532 124777788888887743221 11 12345666677788888999999999999876532
Q ss_pred ------------ccccccCCchHHHHHHHHHHHHHhhChhh----HHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHH
Q psy15604 364 ------------KVSLLFNEIENIQRVAAGLLCELAQDKEG----AETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIF 427 (986)
Q Consensus 364 ------------~i~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~ 427 (986)
.+..+.++++.++..++.+|.+++..-.. ... -...++.++..+.+. ..++..++.++ .
T Consensus 404 ~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al--~ 478 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTI--I 478 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHH--H
Confidence 14556678889999999999988743110 001 112467777777665 45554444333 2
Q ss_pred hhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCC-
Q psy15604 428 KIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDED- 506 (986)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~- 506 (986)
++...... ..+. .. .......++.+++.+.+.+
T Consensus 479 ~l~~~~~~----~~~~-----------~l-------------------------------~~~~~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 479 NLVEQLAE----ATPS-----------PI-------------------------------YNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp HHHHHHSS----SSSC-----------GG-------------------------------GGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHhccc----ccch-----------hh-------------------------------HHHHHHHHHHHHHHHhCcCc
Confidence 11100000 0000 00 0000122667777787543
Q ss_pred -HHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCC--------------CCHHHHHHHHHHHHHhhC-Cccc
Q psy15604 507 -QVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNS--------------NDLETTKGAVGTLHNLSH-HRQG 569 (986)
Q Consensus 507 -~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~--------------~~~~~~~~a~~~L~~ls~-~~~~ 569 (986)
+.++..++.++..+...... ....+. .+++.+++.+... ...+++..++.+|.+++. ....
T Consensus 513 ~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred chHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78888899999988765442 222222 4566666666421 134577788889988876 2221
Q ss_pred hhhhhccCChHHHHHhcCCCCH-hHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 570 LLAIFKSGGIPALVKLLSSPVE-SVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 570 ~~~i~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
.... -...++.++..+++.+. .+++.++.++..++..... ....+ ...++.+...+.++++.++..+.+++..++
T Consensus 591 ~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 591 VEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp TGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 12456777788877766 8999999999998855332 22222 346788888888788889999999999988
Q ss_pred cCCcccHHHHHhCCChHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCCCC---------
Q psy15604 648 YGNQESKLIILASQGPVELVRIMRSYD-YEKLLWCTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGHPS--------- 716 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~~~--------- 716 (986)
....+.-.... ...++.+.+.+.+.+ +..++..+..+++.++...... ...+ ...++.|...+....
T Consensus 668 ~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~~d~d~~~ 745 (861)
T 2bpt_A 668 NSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL-NDIMALCVAAQNTKPENGTLEALD 745 (861)
T ss_dssp HHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCCCSSSSHHHHH
T ss_pred HHhchhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCCCCChHHHH
Confidence 74322222222 245666777777653 3567788888998886542211 1112 246777777776431
Q ss_pred --HHHHHHHHHHHHHhhccccc-----ccchhchHHHHHHHhccC----ChhhHHHHHHHHhhhcc
Q psy15604 717 --QRLVQNCLWTLRNLSDAGTK-----VDGLESLLQSLVQLLASQ----DINVITCAAGVTVCQVG 771 (986)
Q Consensus 717 --~~v~~~al~~L~nLs~~~~~-----~~~~~~~l~~L~~ll~~~----~~~i~~~a~~~L~ni~~ 771 (986)
..++..++.++..+...-.. ......+++.+...+.+. +..+|..|+.+++.++.
T Consensus 746 ~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 746 YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 35778888888888733221 112234555555555553 78899999999998754
No 44
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.71 E-value=2.1e-14 Score=179.43 Aligned_cols=666 Identities=11% Similarity=0.035 Sum_probs=386.7
Q ss_pred HHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHhcccCcchh
Q psy15604 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE--DQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 79 i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
-..++..+.+++... ..+..++..++........+ ...++.|...+.++ ++.++..++.+|..++..-. .+
T Consensus 92 k~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w-----~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~ 164 (876)
T 1qgr_A 92 KNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PE 164 (876)
T ss_dssp HHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HH
T ss_pred HHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccccc-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-Hh
Confidence 344677777766666 66677777776531111111 34578899999998 99999999999999986421 11
Q ss_pred Hhhh-CCchHHHHHHHHhcCC-CHHHHHHHHHHHHhhccC-ccc-hHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHH
Q psy15604 157 AIMN-SPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHH-RQG-LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232 (986)
Q Consensus 157 ~i~~-~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~~ls~~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 232 (986)
.+.. ...+++.+...+.+.+ +..+|..|+.+|.++... +.+ .........++.+...+.+.+++++..++.+|..+
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l 244 (876)
T 1qgr_A 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 1111 1224566777777643 688999999999998754 211 11111122577778888888899999999999999
Q ss_pred hcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhH------------------HHH--HhCCCHH
Q psy15604 233 LLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK------------------LII--LASQGPV 292 (986)
Q Consensus 233 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~------------------~~~--~~~g~v~ 292 (986)
+...+..-........++.++..+.+.++.++..+...+..++....... ... .-...++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 96554332233323678888888888888899988888888865211000 000 0012345
Q ss_pred HHHHHHhcC------ChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc---
Q psy15604 293 ELVRIMRSY------DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT--- 363 (986)
Q Consensus 293 ~L~~ll~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~--- 363 (986)
.++..+... +...++..+..+|..++..... .+. ...++.+...+.+++..++..++++++.++....
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 666666532 1224777888888888743221 111 2456667777788899999999999998876432
Q ss_pred -----------ccccccCCchHHHHHHHHHHHHHhhCh-h---hHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHh
Q psy15604 364 -----------KVSLLFNEIENIQRVAAGLLCELAQDK-E---GAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFK 428 (986)
Q Consensus 364 -----------~i~ll~~~~~~~~~~a~~~L~~l~~~~-~---~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~ 428 (986)
.+..+.++++.++..|+.+|.+++..- . ....+ ...++.|+..+.+. ..++..++.++ .+
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al--~~ 476 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAF--SS 476 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHH--HH
Confidence 155667788999999999999998532 1 11111 23567777777764 55555444433 22
Q ss_pred hccccccccccccccchhhccCCCCCCCCC----chhHHHHhcCCC---cHHHH----HHHHHHhcCCc--hhhhhcCCH
Q psy15604 429 IHKINIHRGCLMFPETLEEGIEIPSTQFDT----AQPTAVQRLTEP---SQMLK----HAVVNLINYQD--DADLATRAI 495 (986)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~~~---~~~~~----~a~~~l~~~~~--~~~~~~~~i 495 (986)
+....... .... ..........+.+ -.+.+...+... ...++ .++..++.... ........+
T Consensus 477 l~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 477 LAEAAYEA----ADVA-DDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHT----TSCT-TSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HHHHhhhc----cccc-cccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 22110000 0000 0000000000111 223333444332 11222 23333333221 111112334
Q ss_pred HHHHHHhc-----------CCC----HHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCCC-HHHHHHHH
Q psy15604 496 PELIKLLN-----------DED----QVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSND-LETTKGAV 557 (986)
Q Consensus 496 ~~L~~ll~-----------~~~----~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~~-~~~~~~a~ 557 (986)
+.++..+. ++| ++++..++.++..+...-. ...... +.+++.++..+++... ..++..++
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHH
Confidence 44444333 223 4556777888888865443 222222 2678888888866521 46888999
Q ss_pred HHHHHhhCC-ccchhhhhccCChHHHHHhcCCC-CHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcC--CC
Q psy15604 558 GTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSP-VESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGR--NN 632 (986)
Q Consensus 558 ~~L~~ls~~-~~~~~~i~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~--~~ 632 (986)
.++..++.. .......+ ...++.+...+.+. ++.++..++++++.++..... .+..+ ...++.++..+.+ .+
T Consensus 630 ~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~ 706 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC--DEVMQLLLENLGNENVH 706 (876)
T ss_dssp HHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhCCcccc
Confidence 999998762 11111111 23667888888776 789999999999999864332 22222 4567778888876 36
Q ss_pred HhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCC----h------hHHHHHHHHHHHHhhcC--CC-----C
Q psy15604 633 VKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD----Y------EKLLWCTSRVLKVLSVC--SS-----N 695 (986)
Q Consensus 633 ~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~------~~~~~~~~~~L~~Ls~~--~~-----~ 695 (986)
..++..+.+++.+++...++.-..++ ...++.+.+.+.... + ..++..+..++..+..+ .. +
T Consensus 707 ~~~~~~~~~~l~~i~~~~g~~~~~~l-~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 707 RSVKPQILSVFGDIALAIGGEFKKYL-EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred HHhhHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 78999999999999763211111112 124455555554331 1 14555556666554322 10 0
Q ss_pred -chhHHh--cCcHHHHHHhhCCC--CHHHHHHHHHHHHHhhccccc--cc-c-hhchHHHHHH-HhccCChhhHHHHHHH
Q psy15604 696 -KPAIVE--AGGMQALAMHLGHP--SQRLVQNCLWTLRNLSDAGTK--VD-G-LESLLQSLVQ-LLASQDINVITCAAGV 765 (986)
Q Consensus 696 -~~~l~~--~g~~~~L~~ll~~~--~~~v~~~al~~L~nLs~~~~~--~~-~-~~~~l~~L~~-ll~~~~~~i~~~a~~~ 765 (986)
...+.. ...++.+..+..++ +..++..|+.+|+.|+..... .. . ...+++.++. .+.++++.+|..|+|+
T Consensus 786 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a 865 (876)
T 1qgr_A 786 DVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865 (876)
T ss_dssp GGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHH
Confidence 011100 11233343444666 789999999999999844322 11 1 2467777887 8889999999999999
Q ss_pred Hhhhc
Q psy15604 766 TVCQV 770 (986)
Q Consensus 766 L~ni~ 770 (986)
+++++
T Consensus 866 ~~~~~ 870 (876)
T 1qgr_A 866 TKELR 870 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98653
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.70 E-value=9.1e-14 Score=173.70 Aligned_cols=565 Identities=12% Similarity=0.031 Sum_probs=342.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCccchHHHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHHRQGLLAIF 202 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~ 202 (986)
+.|+..+.++++.+ ..++.++..++........ -+.+++.|+..+.+.+ ++.++..++.+|..++..-. .+.+.
T Consensus 93 ~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~---w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~ 167 (876)
T 1qgr_A 93 NYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQ 167 (876)
T ss_dssp HHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHG
T ss_pred HHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccc---cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHH
Confidence 34777888887777 8888999988865322121 2346799999888733 88999999999999976411 11111
Q ss_pred --hcCChHHHHHhhCCC--CHhHHHHHHHHHHHHhcCCCCc-hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 203 --KSGGIPALVKLLSSP--VESVLFYAITTLHNLLLHQEGS-KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 203 --~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
-...++.+...+.++ +.+++..++.+|.+++..-+.. .........++.+...+.+.+++++..++.++..++..
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 247 (876)
T 1qgr_A 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (876)
T ss_dssp GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 124567777888776 6889999999999988432111 00111112566777777777888999999999999864
Q ss_pred ChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCC-------------------CChHHH--HHhccHHHH
Q psy15604 278 NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS-------------------SNKPAI--VEAGGMQAL 336 (986)
Q Consensus 278 ~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~-------------------~~~~~i--~~~g~l~~L 336 (986)
.+..-........++.++..+.+.+. .++..+...+..++... .....+ .-...++.+
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 248 YYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp SGGGCHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 44332223334667777777765544 47777777777665321 000111 113346667
Q ss_pred HHHhCC-------CCHHHHHHHHHHHhccccccc----------ccccccCCchHHHHHHHHHHHHHhhCh--hhHHHHH
Q psy15604 337 AMHLGH-------PSQRLVQNCLWTLRNLSDAGT----------KVSLLFNEIENIQRVAAGLLCELAQDK--EGAETIE 397 (986)
Q Consensus 337 ~~ll~~-------~~~~~~~~~~~~L~~ls~~~~----------~i~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~ 397 (986)
+..+.. .+..++..+..+|..++...+ ....+.+.+..++..++.+|..++... +......
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 777642 233556666666666543211 134556788899999999999998542 2211222
Q ss_pred hcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHH
Q psy15604 398 AEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHA 477 (986)
Q Consensus 398 ~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a 477 (986)
...++.++..+.+++..++..++.+++ ++.... +... . .
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~--------~~~~-----------~------------~------- 445 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVG--RICELL--------PEAA-----------I------------N------- 445 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHC--------GGGT-----------S------------S-------
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHH--HHHHhC--------chhc-----------c------------c-------
Confidence 347888999998888877776665542 111100 0000 0 0
Q ss_pred HHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc---------------cchhhhcccCcHHHHHH
Q psy15604 478 VVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA---------------SRHAIMNSPQMVAALVH 542 (986)
Q Consensus 478 ~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~l~~~~~~i~~L~~ 542 (986)
.......++.+++.+.++ +.++..++++|.+++.... .....+ +.+++.|+.
T Consensus 446 ----------~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~ 512 (876)
T 1qgr_A 446 ----------DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLE 512 (876)
T ss_dssp ----------TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHH
Confidence 000022367777888775 8899999999999875421 122233 267888888
Q ss_pred hhcCCC--CHHHHHHHHHHHHHhhCC-ccchhhhhccCChHHHHHhcC-----------CCC----HhHHHHHHHHHHHh
Q psy15604 543 AISNSN--DLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLS-----------SPV----ESVLFYAITTLHNL 604 (986)
Q Consensus 543 lL~~~~--~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~Lv~lL~-----------~~~----~~v~~~a~~aL~nl 604 (986)
.+.... +..++..+..++..+... ...... .-...++.++..+. +.+ ++++..++.++..+
T Consensus 513 ~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l 591 (876)
T 1qgr_A 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591 (876)
T ss_dssp HTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH-HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHH
Confidence 886532 356777888888888762 221111 11233445544433 122 45678889999999
Q ss_pred hcCCC-C-ChHHHHHhCcHHHHHHhhcCCC--HhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHH
Q psy15604 605 LLHQE-G-SKMAVRLAGGLQKMVLLLGRNN--VKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLW 680 (986)
Q Consensus 605 ~~~~~-~-~~~~v~~~g~v~~Lv~ll~~~~--~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 680 (986)
+.... . .... -...++.++.++++.+ +.++..++.++..++......-...+. ..++.+...+.+.+...++.
T Consensus 592 ~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 592 LRKVQHQDALQI--SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HTTSCHHHHHTT--HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHH
T ss_pred HHHhChhhhhHH--HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHH
Confidence 86543 1 1111 1345677778887764 478888999999988632111111122 25667777888774467888
Q ss_pred HHHHHHHHhhcCCCCc-hhHHhcCcHHHHHHhhCC--CCHHHHHHHHHHHHHhhcc-ccc-ccchhchHHHHHHHhcc
Q psy15604 681 CTSRVLKVLSVCSSNK-PAIVEAGGMQALAMHLGH--PSQRLVQNCLWTLRNLSDA-GTK-VDGLESLLQSLVQLLAS 753 (986)
Q Consensus 681 ~~~~~L~~Ls~~~~~~-~~l~~~g~~~~L~~ll~~--~~~~v~~~al~~L~nLs~~-~~~-~~~~~~~l~~L~~ll~~ 753 (986)
.+.+++..++..-... .... ...++.|...+.+ .+..++..+++++++++.. +.. ......+++.+...+..
T Consensus 669 ~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 669 AAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQA 745 (876)
T ss_dssp HHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhc
Confidence 8899999886542211 1112 3567788888876 4578999999999999842 222 12334666666666653
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.69 E-value=1.9e-13 Score=170.55 Aligned_cols=616 Identities=9% Similarity=0.021 Sum_probs=372.8
Q ss_pred cHHHHHHHhcCC-ChhhHHHHHhHHHHHHHhcCCCcc-hhHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHhccc-C
Q psy15604 78 AIPELIKLLNDE-DQDDADLATRAIPELIKLLNDEDQ-DDADLATRAIPELIKLLNDE--DQVVVSQAAMMVHQLSKK-E 152 (986)
Q Consensus 78 ~i~~l~~ll~~~-~~~~~~~a~~aL~~l~~~~~~~~~-~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~la~~-~ 152 (986)
.++.|+..++++ +...+..+..+|..+..-...... ... .....++.+...+.++ +..+|..++.++..+... +
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677888888877 777777777777777653221100 000 1122456667777777 899999999999987532 1
Q ss_pred -cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHH
Q psy15604 153 -ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLH 230 (986)
Q Consensus 153 -~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 230 (986)
........ ..+++.|...+.+ ++..+|..++.+|..+... ++.-...+....++.+...+.+.+++++..++..+.
T Consensus 214 ~~~~~~~~~-~~ll~~l~~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 214 NNMEREGER-NYLMQVVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHTSHHHH-HHHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHccChhHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 10000000 1145666666655 6899999999999999776 332222222256777888888889999999999999
Q ss_pred HHhcCCC-----------------CchHHHHHcCcHHHHHHHhcc-------CCHHHHHHHHHHHHHHhccChh-hHHHH
Q psy15604 231 NLLLHQE-----------------GSKMAVRLAGGLQKMVLLLGR-------NNVKFLAIVTDCLQILAYGNQE-SKLII 285 (986)
Q Consensus 231 ~L~~~~~-----------------~~~~~i~~~g~i~~L~~ll~~-------~~~~~~~~a~~aL~~La~~~~~-~~~~~ 285 (986)
.++.... ....... ...++.++..+.. ++..++..+..+|..++...++ ...
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-- 368 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-- 368 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH--
Confidence 8884311 0001111 3457777777764 2246777888889888752211 111
Q ss_pred HhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHH--HhccHHHHHHHhCCCCHHHHHHHHHHHhcccccc-
Q psy15604 286 LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIV--EAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG- 362 (986)
Q Consensus 286 ~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~--~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~- 362 (986)
..++.+...+.+.++. .++.++.++..++.... ...+. -...++.+...+.++++.++..++|+++.++..-
T Consensus 369 ---~l~~~l~~~l~~~~~~-~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 369 ---PVLEFVEQNITADNWR-NREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp ---HHHHHHHHHTTCSSHH-HHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ---HHHHHHHHHcCCCChh-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 1245555566666654 88888888888875332 12221 1246788888889999999999999998875431
Q ss_pred ------c--------ccccccCCchHHHHHHHHHHHHHhhCh------hhHHHHHhcCCcHHHHHHhccCc--hhHHHHH
Q psy15604 363 ------T--------KVSLLFNEIENIQRVAAGLLCELAQDK------EGAETIEAEGATAPLTDLLHSRN--EGVEILI 420 (986)
Q Consensus 363 ------~--------~i~ll~~~~~~~~~~a~~~L~~l~~~~------~~~~~l~~~g~l~~Lv~ll~~~~--~~~~~~~ 420 (986)
. .+..+.+. +.++..++.+|.+++..- .....+ ...++.|+.++.+.+ ..++..+
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHH
Confidence 1 13444444 889999999999887531 122222 224667777776433 4555544
Q ss_pred HHHH-HHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHH
Q psy15604 421 QGVH-KIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELI 499 (986)
Q Consensus 421 ~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~ 499 (986)
..++ .+.... . . .....+ ...+|.++
T Consensus 521 ~~al~~l~~~~---~--------~---------------~~~~~~---------------------------~~l~~~l~ 547 (861)
T 2bpt_A 521 FSALTTMVEYA---T--------D---------------TVAETS---------------------------ASISTFVM 547 (861)
T ss_dssp HHHHHHHHHHC---C--------G---------------GGHHHH---------------------------HHHHHHHH
T ss_pred HHHHHHHHHHc---c--------h---------------hhHHHH---------------------------HHHHHHHH
Confidence 4333 221100 0 0 000000 01123333
Q ss_pred HHhc---------------CCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCH-HHHHHHHHHHHH
Q psy15604 500 KLLN---------------DEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDL-ETTKGAVGTLHN 562 (986)
Q Consensus 500 ~ll~---------------~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~-~~~~~a~~~L~~ 562 (986)
+.+. +....++..++.+|..+...-.. ..... ..+++.+...++.. +. .++..+.+++..
T Consensus 548 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 548 DKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKK-DSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHST-TGGGTHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccC-CCCcHHHHHHHHHHH
Confidence 3222 11345667788888888654332 22222 25777888888665 34 788999999998
Q ss_pred hhCC--ccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcCCC--HhHHH
Q psy15604 563 LSHH--RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGRNN--VKFLA 637 (986)
Q Consensus 563 ls~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~~~--~~v~~ 637 (986)
++.. .+....+ ...+|.+...+++++++++..++.++..++..... ....+ ...++.++..+.+++ +.++.
T Consensus 625 l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~ 700 (861)
T 2bpt_A 625 LAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKP 700 (861)
T ss_dssp HHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhH
Confidence 8762 2222111 33678888888888888999999999999865432 22222 456677788887754 88999
Q ss_pred HHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCC----h------hHHHHHHHHHHHHhhcCCC-CchhHHh--cCc
Q psy15604 638 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD----Y------EKLLWCTSRVLKVLSVCSS-NKPAIVE--AGG 704 (986)
Q Consensus 638 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~------~~~~~~~~~~L~~Ls~~~~-~~~~l~~--~g~ 704 (986)
.+..++..++...++.-..++. ..++.+.+.+.... . ..++..+..++..+...-. ....+.. ...
T Consensus 701 ~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i 779 (861)
T 2bpt_A 701 AVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTI 779 (861)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999988743333222332 35667777766421 1 2355666666666643311 1111111 123
Q ss_pred HHHHHHhhCCC----CHHHHHHHHHHHHHhhccc--ccc-cchh-chHHHHHHHhc---cCChhhHHHHHHHHhh
Q psy15604 705 MQALAMHLGHP----SQRLVQNCLWTLRNLSDAG--TKV-DGLE-SLLQSLVQLLA---SQDINVITCAAGVTVC 768 (986)
Q Consensus 705 ~~~L~~ll~~~----~~~v~~~al~~L~nLs~~~--~~~-~~~~-~~l~~L~~ll~---~~~~~i~~~a~~~L~n 768 (986)
++.|...+.+. +..++..|+.+++.|+..- ... .... .+++.|++.+. +.+..++..|+|++..
T Consensus 780 ~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~ 854 (861)
T 2bpt_A 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQ 854 (861)
T ss_dssp HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 44454555442 7889999999999998532 332 2233 67888888877 3567889999999973
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.66 E-value=1.2e-13 Score=162.55 Aligned_cols=469 Identities=12% Similarity=0.121 Sum_probs=316.6
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
++..+++++++++...++.+--++..+.+. ++ . ...-+++.+.+-|.++++.+|..|+.+|+++...+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~----e-~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~----- 117 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QP----D-MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDK----- 117 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SH----H-HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGG-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--Cc----h-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHH-----
Confidence 567788889999999988776666555441 11 1 11235678888899999999999999999987322
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
+.+. +++.+.++|.+ .++.+|..|+.+|.++... |+ .+.+.+.++.+..+|.++++.++..|+.+|..++..+
T Consensus 118 ~~~~--l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 118 ITEY--LCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp GHHH--HHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH--HHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 2221 45778888876 7999999999999999875 43 2233578899999999999999999999999999665
Q ss_pred CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKV 316 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~ 316 (986)
++........+.+..|+..+.+.++-.+.....++..+...++.... ..++.+..++++.+.. ++..++.++..
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~-V~~ea~~~i~~ 265 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSA-VVLSAVKVLMK 265 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTH-HHHHHHHHHHH
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChH-HHHHHHHHHHH
Confidence 53310001123467778888778888887777777777643332222 2356666677766654 88888888888
Q ss_pred hhhC----CCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccc--------cccccCCchHHHHHHHHHHH
Q psy15604 317 LSVC----SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------VSLLFNEIENIQRVAAGLLC 384 (986)
Q Consensus 317 Ls~~----~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~--------i~ll~~~~~~~~~~a~~~L~ 384 (986)
+... +..... .-....+.|+.++ ++++.++..++.+|..+....+. +-.+.+++..++..++.+|.
T Consensus 266 l~~~~~~~~~~~~~-~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 266 FLELLPKDSDYYNM-LLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp SCCSCCBTTBSHHH-HHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHH-HHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 7632 222222 2234556777655 47889999999999888654332 11122445889999999999
Q ss_pred HHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHH
Q psy15604 385 ELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAV 464 (986)
Q Consensus 385 ~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 464 (986)
.++..... .. .++.|...+.+.+...+..+...+ ..++. -++.
T Consensus 344 ~l~~~~nv-~~-----iv~~L~~~l~~~d~~~r~~~v~aI--~~la~--------~~~~--------------------- 386 (591)
T 2vgl_B 344 RLASQANI-AQ-----VLAELKEYATEVDVDFVRKAVRAI--GRCAI--------KVEQ--------------------- 386 (591)
T ss_dssp HTCCSSTH-HH-----HHHHHHHHTTSSCHHHHHHHHHHH--HHHHT--------TCHH---------------------
T ss_pred HHCChhhH-HH-----HHHHHHHHHhcCCHHHHHHHHHHH--HHHHH--------hChh---------------------
Confidence 98854432 22 355677777776666665444333 11110 0000
Q ss_pred HhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhh
Q psy15604 465 QRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 544 (986)
Q Consensus 465 ~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL 544 (986)
.....++.+++++.+.+..+...++.++.++....+.. . ..+++.|.+.+
T Consensus 387 -------------------------~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~----~-~~~v~~L~~~l 436 (591)
T 2vgl_B 387 -------------------------SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK----Y-ESIIATLCENL 436 (591)
T ss_dssp -------------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS----C-CTTHHHHHHTT
T ss_pred -------------------------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch----H-HHHHHHHHHHH
Confidence 00223788889999999999999999999886654321 1 26788899988
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHH
Q psy15604 545 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKM 624 (986)
Q Consensus 545 ~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~L 624 (986)
....+++++..++|+|+..+....+.. ..++.+++-+...++.++..++.++..+....+.... ..+..+
T Consensus 437 ~~~~~~~~~~~~~wilGey~~~~~~~~-----~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~-----~~i~~l 506 (591)
T 2vgl_B 437 DSLDEPDARAAMIWIVGEYAERIDNAD-----ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQ-----ELVQQV 506 (591)
T ss_dssp TTCCSHHHHHHHHHHHHTTCTTCTTHH-----HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTH-----HHHHHH
T ss_pred HhccCHHHHHHHHHHHHcccccccCHH-----HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHH-----HHHHHH
Confidence 777789999999999999977332211 2233444444556789999999999999987665331 123445
Q ss_pred HHhh-c-CCCHhHHHHHHHHHHHHhcC
Q psy15604 625 VLLL-G-RNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 625 v~ll-~-~~~~~v~~~a~~aL~~L~~~ 649 (986)
++.. . +.+++++..|+..++.+..+
T Consensus 507 l~~~~~d~~d~evrdRA~~y~~ll~~~ 533 (591)
T 2vgl_B 507 LSLATQDSDNPDLRDRGYIYWRLLSTD 533 (591)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTTTTC
T ss_pred HHHhhhcCCChHHHHHHHHHHHHHCcC
Confidence 5543 3 46889999999888777553
No 48
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.66 E-value=1.8e-12 Score=167.39 Aligned_cols=691 Identities=14% Similarity=0.103 Sum_probs=390.6
Q ss_pred hHHHHHHHHhcCCChhHHhhHHHHHHHhhcChh--hHHHHHhcCCcHHHHHHHHh-----------hhc-----CCCc--
Q psy15604 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ--GLLAIFKSGGIPALVKLLSK-----------TLV-----TASS-- 62 (986)
Q Consensus 3 ~~~~lv~~l~~~~d~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~Ll~ll~~-----------~l~-----~~~~-- 62 (986)
.++.++..+. ++++++|..|+.+|..++.... .... .++.|++.+.+ .++ ....
T Consensus 49 il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~~-----i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 49 VVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 5677888887 5779999999999999985321 1111 23334443321 000 0000
Q ss_pred ---ccccccccccccccCcHHHHHHHhc-CCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHH
Q psy15604 63 ---NNTLILQDDADLATRAIPELIKLLN-DEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVV 138 (986)
Q Consensus 63 ---~~~~~~~~~~~~~~g~i~~l~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 138 (986)
...... ...++.|...++ +++...+..|..+|..+....... ... .-...++.|...+.++++.+|
T Consensus 123 ~~~~~~~~~-------~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~-l~~--~~~~ll~~l~~~L~~~~~~vR 192 (1230)
T 1u6g_C 123 GSALAANVC-------KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL-LVN--FHPSILTCLLPQLTSPRLAVR 192 (1230)
T ss_dssp -CCTHHHHH-------HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS-CTT--THHHHHHHHGGGGGCSSHHHH
T ss_pred ccchHHHHH-------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH-HHH--HHHHHHHHHHHHHcCCcHHHH
Confidence 000011 136888888887 577777777777776666422111 000 112345667778888899999
Q ss_pred HHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHH--hcCChHHHHHhhCC
Q psy15604 139 SQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF--KSGGIPALVKLLSS 216 (986)
Q Consensus 139 ~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~--~~g~i~~Lv~lL~~ 216 (986)
..++.++..++..... .+. ..+++.++..|....+...+..++.++..++..... .+. -...++.++..+.+
T Consensus 193 ~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 193 KRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp HHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC
Confidence 9999999999865322 222 235788888887644456777888888888765221 111 13678999999998
Q ss_pred CCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-------------------------------------C
Q psy15604 217 PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-------------------------------------N 259 (986)
Q Consensus 217 ~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-------------------------------------~ 259 (986)
.+++++..++.++..++...+..-.... ...++.++..+.. .
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------C
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 8999999999999988865432211111 2234444444421 0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCC----------------
Q psy15604 260 NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN---------------- 323 (986)
Q Consensus 260 ~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~---------------- 323 (986)
..+++..++.++..++...++.-..+ -...++.++..++..+ +.++..+..++..+......
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKERE-ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 423 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSS-SHHHHHHHHHHHHHHHHHCCC------------CCC
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhccccccccCccccccccc
Confidence 12356778888888876333211112 2345666666665544 44787777777666532110
Q ss_pred -hHHH--HHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc-------------ccccccCCc--hHHHHHHHHHHHH
Q psy15604 324 -KPAI--VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-------------KVSLLFNEI--ENIQRVAAGLLCE 385 (986)
Q Consensus 324 -~~~i--~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~-------------~i~ll~~~~--~~~~~~a~~~L~~ 385 (986)
...+ .-...++.+.+.+.+.+++++..+..+|+.+....+ .+..+.... ..++..++..+..
T Consensus 424 ~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 424 PLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 1111 112345556666888888888888888877644321 134444443 4788899999988
Q ss_pred HhhC--hh-hHHHHHhcCCcHHHHHHhccCchhHHHHHHHHH-HHHhhccccccccccccccchhhccCCCCCCCCCchh
Q psy15604 386 LAQD--KE-GAETIEAEGATAPLTDLLHSRNEGVEILIQGVH-KIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQP 461 (986)
Q Consensus 386 l~~~--~~-~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (986)
+... ++ ....+ ...++.|+..+.+.+..++..+..++ .+.... .+.. ... ...
T Consensus 504 ~~~~~~~~~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~----------~~~~-----~~~----~~~-- 560 (1230)
T 1u6g_C 504 ILCNHSPQVFHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLVKVI----------RPLD-----QPS----SFD-- 560 (1230)
T ss_dssp HHHSSCGGGGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH----------CCSS-----SCC----CCC--
T ss_pred HHHhCCHHHHHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHh----------cCcc-----ccc----ccc--
Confidence 8642 22 22222 35788888888776655543232222 111000 0000 000 000
Q ss_pred HHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHH
Q psy15604 462 TAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLL--NDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVA 538 (986)
Q Consensus 462 ~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~ 538 (986)
+. .+....++.++..+ .+.++.++..|+.+++.++..... ....+ +.+++
T Consensus 561 ------------~~-------------~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~--~~~l~ 613 (1230)
T 1u6g_C 561 ------------AT-------------PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL--PNTLQ 613 (1230)
T ss_dssp ------------CH-------------HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH--HHHHH
T ss_pred ------------hH-------------HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH--HHHHH
Confidence 00 00012267777777 667899999999999999765432 11111 24556
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhCCcc-chhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCC--hHHH
Q psy15604 539 ALVHAISNSNDLETTKGAVGTLHNLSHHRQ-GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGS--KMAV 615 (986)
Q Consensus 539 ~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~--~~~v 615 (986)
.|.+.+.. ...+..++.++..++.... ....-+-...++.+...+++++..++..++.++..++...+.. ...+
T Consensus 614 ~L~~~l~~---e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v 690 (1230)
T 1u6g_C 614 IFLERLKN---EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 690 (1230)
T ss_dssp HHHHHTTS---SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHhcc---chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHH
Confidence 66665543 3467788889988876321 0111222456788888899999999999999999999766431 1111
Q ss_pred HHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCC
Q psy15604 616 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD-YEKLLWCTSRVLKVLSVCSS 694 (986)
Q Consensus 616 ~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~L~~Ls~~~~ 694 (986)
. ..+..+..++..++..+...+..+|..++...+..... .....++.++.++++.. ...........+..+.....
T Consensus 691 ~--~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 767 (1230)
T 1u6g_C 691 D--AVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK-ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT 767 (1230)
T ss_dssp H--HHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG-TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred H--HHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH-hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC
Confidence 1 11111223344567778888999999998765432111 22345666777666542 11111111112222211100
Q ss_pred ---CchhHHh----------------------cCcHH---------------HHHHhhCC--CCHHHHHHHHHHHHHhhc
Q psy15604 695 ---NKPAIVE----------------------AGGMQ---------------ALAMHLGH--PSQRLVQNCLWTLRNLSD 732 (986)
Q Consensus 695 ---~~~~l~~----------------------~g~~~---------------~L~~ll~~--~~~~v~~~al~~L~nLs~ 732 (986)
....++. ...+. .+...+.+ .++..+..++++++.+..
T Consensus 768 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~ 847 (1230)
T 1u6g_C 768 NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 847 (1230)
T ss_dssp TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcc
Confidence 0000000 00111 11112222 234555566677776642
Q ss_pred ccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHH
Q psy15604 733 AGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEA 775 (986)
Q Consensus 733 ~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~ 775 (986)
... ......+.+.++..+.++++.+|..|+.+|+++..+..+
T Consensus 848 ~~~-~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~ 889 (1230)
T 1u6g_C 848 HID-LSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889 (1230)
T ss_dssp HSC-CCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH
T ss_pred cCC-CcccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHH
Confidence 111 111235788999999999999999999999988766544
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.65 E-value=5.4e-13 Score=149.23 Aligned_cols=315 Identities=16% Similarity=0.143 Sum_probs=232.0
Q ss_pred CcHHHHHHHhc-CCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHhccc-C
Q psy15604 77 RAIPELIKLLN-DEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE--DQVVVSQAAMMVHQLSKK-E 152 (986)
Q Consensus 77 g~i~~l~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~la~~-~ 152 (986)
..|+.|++-++ +.-.++++.|..+|..+++ ..+..+..++++.|+..|+.+ |.++...++.+|.++... +
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk------~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK------KYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT------TTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHH------HhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 36888888774 5568899998887766643 234556788999999999864 788888899999875532 2
Q ss_pred c-----------------chhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-cc-chHHHHhc-CChHHHHH
Q psy15604 153 A-----------------SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQ-GLLAIFKS-GGIPALVK 212 (986)
Q Consensus 153 ~-----------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~-~~~~i~~~-g~i~~Lv~ 212 (986)
. +.+.+.+..+.++.|+.+|.. +|..+|..+++.|..|+.+ ++ .++.+... ++|+.|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 1 223444444557999999987 7999999999999999987 44 78888865 99999999
Q ss_pred hhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCC----HHHHHHHHHHHHHHhccChhhHHHHHhC
Q psy15604 213 LLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN----VKFLAIVTDCLQILAYGNQESKLIILAS 288 (986)
Q Consensus 213 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~a~~aL~~La~~~~~~~~~~~~~ 288 (986)
+|+++.+.+|-.++..|.+|+.++++.++.+.-.|+++.|+.++..+. ..+...|..++.+|...++.++..|.+.
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 999999999999999999999999999999998899999999997744 3677889999999999999999999999
Q ss_pred CCHHHHHHHHhcCChH-----HHHH---HHHHHHHHhhhCC-------CChHHHHHhccHHHHHHHhCCCCHHHHHHHHH
Q psy15604 289 QGPVELVRIMRSYDYE-----KLLW---CTSRVLKVLSVCS-------SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLW 353 (986)
Q Consensus 289 g~v~~L~~ll~~~~~~-----~~~~---~a~~aL~~Ls~~~-------~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~ 353 (986)
|+++.|..++...+.. .... .+..++..|.... .|+..+.+.|+++.|++++..+
T Consensus 254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~---------- 323 (651)
T 3grl_A 254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT---------- 323 (651)
T ss_dssp TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS----------
T ss_pred CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC----------
Confidence 9999999999754321 1112 2444444443321 2466789999999999988653
Q ss_pred HHhcccccccccccccCCchHHHHHHHHHHHHHh-hChhhHHHHHhcC-----CcHHHHHH----hccC-chhHHHHHHH
Q psy15604 354 TLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELA-QDKEGAETIEAEG-----ATAPLTDL----LHSR-NEGVEILIQG 422 (986)
Q Consensus 354 ~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g-----~l~~Lv~l----l~~~-~~~~~~~~~~ 422 (986)
.-...++..|..+++.+. .++.++..+.+.. ..+.++.+ +.+. .-..|.+++.
T Consensus 324 ----------------~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~ 387 (651)
T 3grl_A 324 ----------------GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLY 387 (651)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHH
Confidence 112345556666666655 3456677766533 23444444 4332 2344545555
Q ss_pred HH
Q psy15604 423 VH 424 (986)
Q Consensus 423 ~~ 424 (986)
++
T Consensus 388 cl 389 (651)
T 3grl_A 388 CF 389 (651)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=3.5e-13 Score=158.73 Aligned_cols=509 Identities=13% Similarity=0.066 Sum_probs=319.2
Q ss_pred CcHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc-Ccch
Q psy15604 77 RAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK-EASR 155 (986)
Q Consensus 77 g~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~-~~~~ 155 (986)
|.+..+-..+++++.+.+..+..- +..+...+.. -..+.+.+++++.+++..+++.+...+..++.. ++.
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~k---li~~~~~G~d-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~- 83 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKK---VIAAMTVGKD-----VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM- 83 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHH---HHHHHHTTCC-----CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH-
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHH---HHHHHHCCCC-----hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH-
Confidence 678899999999887776654443 3322111111 133567788999999999999998888887763 221
Q ss_pred hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcC
Q psy15604 156 HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH 235 (986)
Q Consensus 156 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 235 (986)
+ -. .+..+.+-|++ +++.+|..|+.+|+++. .++.... .++.+.+++.++++.++..|+.++.++...
T Consensus 84 --~-~l--~~n~l~kdL~~-~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 84 --A-IM--AVNSFVKDCED-PNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp --H-HT--THHHHGGGSSS-SSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred --H-HH--HHHHHHHHcCC-CCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence 1 11 23555555665 78999999999999985 3333332 467899999999999999999999999976
Q ss_pred CCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHH
Q psy15604 236 QEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLK 315 (986)
Q Consensus 236 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~ 315 (986)
+++. +.+.+.++.+..+|.+.++.++..|+.+|..++..+++....-...+.+..|+..+...++. .+...+++|.
T Consensus 152 ~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~-~q~~il~~l~ 227 (591)
T 2vgl_B 152 NAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEW-GQIFILDCLS 227 (591)
T ss_dssp SCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHHH
T ss_pred Chhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCch-HHHHHHHHHH
Confidence 6543 33357889999999999999999999999999876543210000012245666666555433 3333444443
Q ss_pred HhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhh----Chh
Q psy15604 316 VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQ----DKE 391 (986)
Q Consensus 316 ~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~----~~~ 391 (986)
.+. +..... ....++.+... +.+.++.+...|++++..+.. +++
T Consensus 228 ~l~--~~~~~~--~~~~l~~l~~~----------------------------l~~~~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 228 NYN--PKDDRE--AQSICERVTPR----------------------------LSHANSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp TSC--CCSHHH--HHHHHHHHTTC----------------------------SCSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred HhC--CCChHH--HHHHHHHHHHH----------------------------HcCCChHHHHHHHHHHHHHhhccCCCHH
Confidence 332 111111 01122222222 223444555555555555431 000
Q ss_pred hHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCc
Q psy15604 392 GAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPS 471 (986)
Q Consensus 392 ~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 471 (986)
..+.
T Consensus 276 ~~~~---------------------------------------------------------------------------- 279 (591)
T 2vgl_B 276 YYNM---------------------------------------------------------------------------- 279 (591)
T ss_dssp SHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHH
Q psy15604 472 QMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE 551 (986)
Q Consensus 472 ~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~ 551 (986)
.+ ....+.|+.++ ++++.+|..|+..|..+....+. ++. ..+..+.. + .+++..
T Consensus 280 -----~~-------------~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~---~~~--~~~~~~~~-~-~~d~~~ 333 (591)
T 2vgl_B 280 -----LL-------------KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE---ILK--QEIKVFFV-K-YNDPIY 333 (591)
T ss_dssp -----HH-------------HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS---TTT--TCTTTTSC-C-TTSCHH
T ss_pred -----HH-------------HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH---HHH--HHHHhhee-c-cCChHH
Confidence 00 11144555544 47788888888888888664321 111 11111111 1 123588
Q ss_pred HHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC
Q psy15604 552 TTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN 631 (986)
Q Consensus 552 ~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~ 631 (986)
++..++++|.+++... +... .++.|..++++.+.+++..+++++++++...+.. ....++.|++++...
T Consensus 334 Ir~~al~~L~~l~~~~-nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~-----~~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 334 VKLEKLDIMIRLASQA-NIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS-----AERCVSTLLDLIQTK 402 (591)
T ss_dssp HHHHHHHHHHHTCCSS-THHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCChh-hHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH-----HHHHHHHHHHHHccc
Confidence 9999999999987532 3322 3566778888889999999999999999765321 234678899999888
Q ss_pred CHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHh
Q psy15604 632 NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMH 711 (986)
Q Consensus 632 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~l 711 (986)
...+...+..++.++....|+.+ ..++..|.+.+........+..+.|+++..+....+.. ..++.++..
T Consensus 403 ~~~v~~e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~-----~~l~~l~~~ 472 (591)
T 2vgl_B 403 VNYVVQEAIVVIRDIFRKYPNKY-----ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD-----ELLESFLEG 472 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHH-----HHHHHHSTT
T ss_pred chHHHHHHHHHHHHHHHHCcchH-----HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHH-----HHHHHHHHh
Confidence 88888888888888877555432 45677888888765546667777788777765443321 233444444
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHh-c-cCChhhHHHHHHHHh
Q psy15604 712 LGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLL-A-SQDINVITCAAGVTV 767 (986)
Q Consensus 712 l~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll-~-~~~~~i~~~a~~~L~ 767 (986)
+...++.++..++.++..+....+.. ....+..++... . +.|+++|.-|+..+.
T Consensus 473 ~~~~~~~vr~~~l~a~~Kl~~~~p~~--~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 473 FHDESTQVQLTLLTAIVKLFLKKPSE--TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTTCCST--THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 45567889999999999988432221 124555555553 3 368899999988775
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.64 E-value=6.3e-13 Score=148.68 Aligned_cols=442 Identities=15% Similarity=0.083 Sum_probs=288.8
Q ss_pred CHHHHHHHHccC-CHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCcc---
Q psy15604 122 AIPELIKLLNDE-DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQ--- 196 (986)
Q Consensus 122 ~i~~L~~ll~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~~a~~~L~~ls~~~~--- 196 (986)
.|+.|..-+.+. -.+=|+.|+..|..+++ ..+..++..| ++.|+..|++. +|.++...++.+|.++....+
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~~--l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLEVGIQA--MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTHHHHHT--HHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHHhhhhh--HHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 456666666654 36678899999999985 5677777653 59999999853 689999999999988755421
Q ss_pred ---------------chHHH-HhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCC-chHHHHHc-CcHHHHHHHhcc
Q psy15604 197 ---------------GLLAI-FKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLA-GGLQKMVLLLGR 258 (986)
Q Consensus 197 ---------------~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~~i~~~-g~i~~L~~ll~~ 258 (986)
+.+.+ .+.+.|+.|+.+|++.+-.++.+++.+|..++..++. .+..|... +|++.|+.+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 11222 3458899999999999999999999999999988776 77778755 999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCCh---HHHHHHHHHHHHHhhh-CCCChHHHHHhccHH
Q psy15604 259 NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDY---EKLLWCTSRVLKVLSV-CSSNKPAIVEAGGMQ 334 (986)
Q Consensus 259 ~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~---~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~ 334 (986)
+.+.++..+...|..|+.++++.++.+.-+|+++.|+.+++.... ..+...|+.+|.+|.. ++.|+..+.|.|+++
T Consensus 178 ~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 178 SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999987432 3467788899999984 556889999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHH---HHHHHHHHhh-------ChhhHHHHHhcCCcHH
Q psy15604 335 ALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRV---AAGLLCELAQ-------DKEGAETIEAEGATAP 404 (986)
Q Consensus 335 ~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~---a~~~L~~l~~-------~~~~~~~l~~~g~l~~ 404 (986)
.|..++..+.+. . ...+.-..+ +..++.-|.. .+.+++.+.+.|+++.
T Consensus 258 ~L~~LL~~~~~~----~------------------~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~ 315 (651)
T 3grl_A 258 RMKPWFEVGDEN----S------------------GWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ 315 (651)
T ss_dssp GGGGGGCCCSCS----S------------------CCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHhCCCccc----c------------------ccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHH
Confidence 999888542210 0 011111111 2222222221 3467889999999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcC
Q psy15604 405 LTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINY 484 (986)
Q Consensus 405 Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~ 484 (986)
|++++.+..........++.++.....
T Consensus 316 Ll~ll~~~~~p~~i~~~Al~tla~~ir----------------------------------------------------- 342 (651)
T 3grl_A 316 LCTILMATGVPADILTETINTVSEVIR----------------------------------------------------- 342 (651)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHT-----------------------------------------------------
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHh-----------------------------------------------------
Confidence 999988764433333332222221111
Q ss_pred CchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhh-ccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q psy15604 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL 563 (986)
Q Consensus 485 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~l 563 (986)
+++..|.. +...-. .... .+.++..|+.++.+....+++..++.++...
T Consensus 343 --------------------gN~~~Q~~----fa~~~vp~~~~------~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 343 --------------------GCQVNQDY----FASVNAPSNPP------RPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp --------------------TCHHHHHH----HHHCEESSSSC------EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred --------------------CCHHHHHH----HhhccCCCCCC------cChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 11111111 110000 0000 0123444555555555677888888888877
Q ss_pred hC-Cccchhhhhcc----------CChH---HHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHh-----------
Q psy15604 564 SH-HRQGLLAIFKS----------GGIP---ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLA----------- 618 (986)
Q Consensus 564 s~-~~~~~~~i~~~----------~~i~---~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~----------- 618 (986)
.. +++.+..++.. +.++ .+..-+-+.++--...|+.+|.++..+++..+..+.+.
T Consensus 393 ~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~v 472 (651)
T 3grl_A 393 LYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPV 472 (651)
T ss_dssp HTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCC
T ss_pred HhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcc
Confidence 76 43444333321 1111 23444555677666778889999999888777765541
Q ss_pred CcHHHHHHhhcCC-CHhHHHHHHHHHHHHhcCCcccHHHHHhCCC-hHHHHHHHhc
Q psy15604 619 GGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQESKLIILASQG-PVELVRIMRS 672 (986)
Q Consensus 619 g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~-~~~L~~ll~~ 672 (986)
-.++.+..+|... ++.+...-...|.--.++.|..-..+++.+. ++.|++.+.+
T Consensus 473 tliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 473 SLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp BHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHh
Confidence 1245556665443 4443322222222223355666666666654 7777776643
No 52
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.60 E-value=9.7e-13 Score=169.90 Aligned_cols=637 Identities=14% Similarity=0.102 Sum_probs=381.8
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcc-hhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQ-DDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
.+..++.-+.+++.+.+..|...|... +..+.. ...-.....++.|++.+.+.++.+|..|+.+|..++..-..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~---l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTE---LQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHH---TSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHH---HcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--
Confidence 477788888999999998877655443 222211 00011124567788999999999999999999999864221
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccc-----hHHHHhcCChHHHHHhhC-CCCHhHHHHHHHHH
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQG-----LLAIFKSGGIPALVKLLS-SPVESVLFYAITTL 229 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~-----~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L 229 (986)
.... .+++.|+..|.+ +++.+|..|+.+|..++.. ... ...-.-...+|.|...+. ++++.++..|+.+|
T Consensus 82 ~~~~--~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 82 YQVE--TIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HHHH--HHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1111 256777777776 5667899999999998765 221 011112347889999998 57889999999999
Q ss_pred HHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHH
Q psy15604 230 HNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWC 309 (986)
Q Consensus 230 ~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~ 309 (986)
..++...+..-... -...++.++..+.+.++.++..++.++..++...++ .+ -...++.++..+...+....+..
T Consensus 159 ~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~ 233 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRT 233 (1230)
T ss_dssp HHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHH
Confidence 99984322111001 123567777778888889999999999999863321 12 23457888888876543334555
Q ss_pred HHHHHHHhhhCCCChHHHH--HhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccc-------------cccccC----
Q psy15604 310 TSRVLKVLSVCSSNKPAIV--EAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK-------------VSLLFN---- 370 (986)
Q Consensus 310 a~~aL~~Ls~~~~~~~~i~--~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~-------------i~ll~~---- 370 (986)
+..++..++..... .+. -...++.+...+.+.++.++..++.++..+....+. +..+..
T Consensus 234 a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~ 311 (1230)
T 1u6g_C 234 YIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY 311 (1230)
T ss_dssp HHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCC
Confidence 66777766643221 111 134678888888887777777777777665432110 122210
Q ss_pred ---------------------------------CchHHHHHHHHHHHHHhhCh-hhHHHHHhcCCcHHHHHHhccCchhH
Q psy15604 371 ---------------------------------EIENIQRVAAGLLCELAQDK-EGAETIEAEGATAPLTDLLHSRNEGV 416 (986)
Q Consensus 371 ---------------------------------~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~l~~Lv~ll~~~~~~~ 416 (986)
....++..|+.+|..++... +.-..+. ...++.++..+.+.+..+
T Consensus 312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENV 390 (1230)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHH
T ss_pred CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHH
Confidence 01235777788887776421 1111111 235666776666666677
Q ss_pred HHHHHHHH-HHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCH
Q psy15604 417 EILIQGVH-KIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAI 495 (986)
Q Consensus 417 ~~~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i 495 (986)
+..+..++ .+..-... ..+ ... .+....+-. . ....+... ....+
T Consensus 391 r~~a~~~l~~l~~~~~~--------~~~-~~~------------~~~~~~~~~-~---~~~~~~~~---------l~~ll 436 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRP--------VQS-WLC------------DPDAMEQGE-T---PLTMLQSQ---------VPNIV 436 (1230)
T ss_dssp HHHHHHHHHHHHHHHCC--------C-------------------------CC-C---HHHHHHHH---------TTHHH
T ss_pred HHHHHHHHHHHHHHhcc--------ccc-ccc------------Ccccccccc-c---hHHHHHHH---------hhHHH
Confidence 65544433 22110000 000 000 000000000 0 00011111 02235
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhC--Cccchh
Q psy15604 496 PELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSH--HRQGLL 571 (986)
Q Consensus 496 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~-~~~~~~~a~~~L~~ls~--~~~~~~ 571 (986)
+.+.+.++++++.++..++.+|+.+...... ....+ ..+++.+...|.... ...++..++..+..+.. .++...
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 514 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFH 514 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHH
Confidence 6677779999999999999999988665321 22222 267888888886543 25889999989888864 222111
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCC--------CChHHHHHhCcHHHHHHhh--cCCCHhHHHHHHH
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQE--------GSKMAVRLAGGLQKMVLLL--GRNNVKFLAIVTD 641 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~--------~~~~~v~~~g~v~~Lv~ll--~~~~~~v~~~a~~ 641 (986)
. .-...+|.++..+++.+..++..++.++..++.... .....+ ...++.++..+ .+.++.++..+..
T Consensus 515 ~-~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~d~~~~vr~~a~~ 591 (1230)
T 1u6g_C 515 P-HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--KDLFTCTIKRLKAADIDQEVKERAIS 591 (1230)
T ss_dssp H-HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--HHHHHHHHHHHSCSSSCHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--HHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 1 224688999999999888898889999988884311 222222 35677888888 5568899999999
Q ss_pred HHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--CchhHHhcCcHHHHHHhhCCCCHHH
Q psy15604 642 CLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS--NKPAIVEAGGMQALAMHLGHPSQRL 719 (986)
Q Consensus 642 aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~--~~~~l~~~g~~~~L~~ll~~~~~~v 719 (986)
++..|+....+.-...+ ...++.|...+.+ +..+..+.+++..++.... ....++ ...++.|...+.+.+..+
T Consensus 592 ~lg~L~~~~g~~~~~~~-~~~l~~L~~~l~~---e~~r~~~~~al~~i~~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~ 666 (1230)
T 1u6g_C 592 CMGQIICNLGDNLGSDL-PNTLQIFLERLKN---EITRLTTVKALTLIAGSPLKIDLRPVL-GEGVPILASFLRKNQRAL 666 (1230)
T ss_dssp HHHHHHHHTGGGCCTHH-HHHHHHHHHHTTS---SSHHHHHHHHHHHHTTCSSCCCCHHHH-HHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHhCchhhhhH-HHHHHHHHHHhcc---chhHHHHHHHHHHHHhCccccchHHHH-HHHHHHHHHHHHhCCHHH
Confidence 99999864211100011 1123333344433 3355677888888865421 112222 357788888899999999
Q ss_pred HHHHHHHHHHhhcccccccchhchHHHHH---HHhccCChhhHHHHHHHHhhhccCcH
Q psy15604 720 VQNCLWTLRNLSDAGTKVDGLESLLQSLV---QLLASQDINVITCAAGVTVCQVGGVE 774 (986)
Q Consensus 720 ~~~al~~L~nLs~~~~~~~~~~~~l~~L~---~ll~~~~~~i~~~a~~~L~ni~~g~~ 774 (986)
+.+++.++..+............+.+.+. .++.+.|.+....+..+|+.+....+
T Consensus 667 r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 667 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp HHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 99999999999854433222223333332 23445677777788888877654433
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.55 E-value=2e-11 Score=144.14 Aligned_cols=514 Identities=13% Similarity=0.028 Sum_probs=310.5
Q ss_pred HHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHh
Q psy15604 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 158 (986)
Q Consensus 79 i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i 158 (986)
+..+-..+++++...+..+.. .+..+...+.. -..+....++++.+.+...++.+-..+..++.... +.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~---kli~~~~~G~d-----~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~--e~~ 105 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVA---KLLYMHMLGYP-----AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ--DVH 105 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHH---HHHHHHHTTCC-----CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH--HHH
T ss_pred HHHHHHHhhCCCHHHHHHHHH---HHHHHHHcCCC-----CcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc--HHH
Confidence 555666666666555544433 33332111111 13356777889999999999988888888876531 111
Q ss_pred hhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCC
Q psy15604 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG 238 (986)
Q Consensus 159 ~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 238 (986)
.- .+..|.+-|++ +++.+|..|+.+|+++.. ++ +. ...++.+.++|.++++.++..|+.++.++...+++
T Consensus 106 ~l---~in~l~kDL~~-~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 106 LL---MTNCIKNDLNH-STQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp HH---HHHHHHHHHSC-SSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HH---HHHHHHHhcCC-CCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 11 24666666776 688999999999999963 22 22 24678889999999999999999999999976654
Q ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcC--------------ChH
Q psy15604 239 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY--------------DYE 304 (986)
Q Consensus 239 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~--------------~~~ 304 (986)
.. .+.++.+..++.+.++.++..++.+|..++..+++....+. ..++.++++|... ..+
T Consensus 176 ~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 176 LM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp GG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred HH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 32 26778888888889999999999999999876554322332 5678888777641 112
Q ss_pred HHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHH
Q psy15604 305 KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLC 384 (986)
Q Consensus 305 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~ 384 (986)
-.+...+++|..+... +. .. .....+.|..++... ...+..+..+...|++++.
T Consensus 249 ~~q~~il~~L~~l~~~--~~-~~-~~~~~~~L~~l~~~~----------------------~~~~~~~~aV~~ea~~~i~ 302 (618)
T 1w63_A 249 FLQVRILRLLRILGRN--DD-DS-SEAMNDILAQVATNT----------------------ETSKNVGNAILYETVLTIM 302 (618)
T ss_dssp HHHHHHHHHHHHHTTT--CH-HH-HHTTHHHHHHHHHTS----------------------CCSSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--CH-HH-HHHHHHHHHHHHhcc----------------------ccccchHHHHHHHHHHHHH
Confidence 2334444555444321 11 10 011122222221100 0000112233333343333
Q ss_pred HHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHH
Q psy15604 385 ELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAV 464 (986)
Q Consensus 385 ~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 464 (986)
.+..++..+
T Consensus 303 ~l~~~~~l~----------------------------------------------------------------------- 311 (618)
T 1w63_A 303 DIKSESGLR----------------------------------------------------------------------- 311 (618)
T ss_dssp HSCCCHHHH-----------------------------------------------------------------------
T ss_pred hcCCCHHHH-----------------------------------------------------------------------
Confidence 332111000
Q ss_pred HhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhh
Q psy15604 465 QRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 544 (986)
Q Consensus 465 ~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL 544 (986)
..+++.|..++.++++.++..|+..|..+..... .++. .....++.++
T Consensus 312 ---------------------------~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~--~~~~~i~~~l 359 (618)
T 1w63_A 312 ---------------------------VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ--RHRSTIVDCL 359 (618)
T ss_dssp ---------------------------HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG--GGHHHHHHGG
T ss_pred ---------------------------HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH--HHHHHHHHHc
Confidence 0114455556667777777777777777765432 1221 3455677777
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHH
Q psy15604 545 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKM 624 (986)
Q Consensus 545 ~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~L 624 (986)
.+ ++..++..++.+|..++... +...+ ++.+...+.+.+.+++..++.+++.++...++..... ++.|
T Consensus 360 ~d-~d~~Ir~~alelL~~l~~~~-nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~l 427 (618)
T 1w63_A 360 KD-LDVSIKRRAMELSFALVNGN-NIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH-----IDTI 427 (618)
T ss_dssp GS-SCHHHHHHHHHHHHHHCCSS-STHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHH
T ss_pred cC-CChhHHHHHHHHHHHHcccc-cHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHH
Confidence 65 47888888888888887642 22322 4677777777888899999999999987655443333 5777
Q ss_pred HHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC-ChhHHHHHHHHHHHHhhcCCCC------c-
Q psy15604 625 VLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY-DYEKLLWCTSRVLKVLSVCSSN------K- 696 (986)
Q Consensus 625 v~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~~~~~L~~Ls~~~~~------~- 696 (986)
+++++.....+...+...+..+...+|+.+... +..|++.+.+. ..+.....+.|+++..+..-.+ .
T Consensus 428 l~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~-----v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~ 502 (618)
T 1w63_A 428 MRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYT-----VQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEP 502 (618)
T ss_dssp HHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHH-----HHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHhccchhHHHHHHHHHHHHhcChhHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccc
Confidence 788776655555556666777766556555333 44677777753 3344555678888877532110 0
Q ss_pred hhHHhcCcHHHHHHhhC--CCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 697 PAIVEAGGMQALAMHLG--HPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 697 ~~l~~~g~~~~L~~ll~--~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
..+....+++.|..++. ..++.++..++.++..+....+.. ..-+...|-.+..+.|.++|..|+..+.
T Consensus 503 ~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 503 IQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 00111123455556554 467899999999999888433221 2334444455566779999999998775
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=3.3e-11 Score=142.25 Aligned_cols=467 Identities=14% Similarity=0.098 Sum_probs=301.5
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
+....++++.+++.+.++..--++ ..++... .. +..-++..|.+-|.++++.++..|+++|+++... .
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~---~~~~~~~--~e--~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~ 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGA---MLLLDER--QD--VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----E 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHH---HHHCCCC--HH--HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----H
T ss_pred hHHHHHHHHcCCchHHHHHHHHHH---HHHhCCC--cH--HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----H
Confidence 567777888898988877654433 3333222 11 1112567788899999999999999999999843 2
Q ss_pred hhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCC
Q psy15604 158 IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 236 (986)
+.+ .+++.+.++|++ .++.+|..|+.++.++... |+... +.++.+..+|.+.++.++..|+.+|..++..+
T Consensus 139 ~~~--~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 139 MCR--DLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHH--HHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HHH--HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 333 256888888887 7999999999999999875 43322 57788889999999999999999999999544
Q ss_pred CCchHHHHHcCcHHHHHHHhcc---------------CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcC
Q psy15604 237 EGSKMAVRLAGGLQKMVLLLGR---------------NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY 301 (986)
Q Consensus 237 ~~~~~~i~~~g~i~~L~~ll~~---------------~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~ 301 (986)
++....+ ...++.++.+|.+ .++-.+.....+|..++..+++... ...+.|..+++..
T Consensus 211 ~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~ 283 (618)
T 1w63_A 211 PDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence 3322222 3678888887753 3678888888999999876664332 3456666666421
Q ss_pred -----ChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc---------cccc
Q psy15604 302 -----DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT---------KVSL 367 (986)
Q Consensus 302 -----~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~---------~i~l 367 (986)
....+...++.++..+.. . ..+. ..+++.|..++.++++.++..++.+|..+....+ .+..
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~---~-~~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~ 358 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKS---E-SGLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDC 358 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCC---C-HHHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHG
T ss_pred ccccchHHHHHHHHHHHHHhcCC---C-HHHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 123466667777766532 2 2222 2567888889988888888988888888755432 2556
Q ss_pred ccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhh
Q psy15604 368 LFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEE 447 (986)
Q Consensus 368 l~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 447 (986)
+..++..++..+..+|..++....... .++.|...+.+.+...+..+...+ ..++.. ++.
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~nv~~------iv~eL~~~l~~~d~e~r~~~v~~I--~~la~k--------~~~---- 418 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNNIRG------MMKELLYFLDSCEPEFKADCASGI--FLAAEK--------YAP---- 418 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSSTHH------HHHHHHHHHHHCCHHHHHHHHHHH--HHHHHS--------SCC----
T ss_pred ccCCChhHHHHHHHHHHHHcccccHHH------HHHHHHHHHHhCCHHHHHHHHHHH--HHHHHH--------hCc----
Confidence 678889999999999999986543322 236667777666666555444333 211100 000
Q ss_pred ccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccc
Q psy15604 448 GIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR 527 (986)
Q Consensus 448 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 527 (986)
. . ...++.++++++.....+...+...+..+....+..
T Consensus 419 -----------~--------------~-----------------~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l 456 (618)
T 1w63_A 419 -----------S--------------K-----------------RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM 456 (618)
T ss_dssp -----------C--------------H-----------------HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST
T ss_pred -----------c--------------H-----------------HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH
Confidence 0 0 111555666666554444455555666654433221
Q ss_pred hhhhcccCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhCC-ccc------hhhhhccCChHHHHHhcC--CCCHhHHHHH
Q psy15604 528 HAIMNSPQMVAALVHAISN-SNDLETTKGAVGTLHNLSHH-RQG------LLAIFKSGGIPALVKLLS--SPVESVLFYA 597 (986)
Q Consensus 528 ~~l~~~~~~i~~L~~lL~~-~~~~~~~~~a~~~L~~ls~~-~~~------~~~i~~~~~i~~Lv~lL~--~~~~~v~~~a 597 (986)
+ ..++..++..+.. .....+...++|+|+..+.. ... ...+.....++.+..+++ ..++.++..+
T Consensus 457 ~-----~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~ 531 (618)
T 1w63_A 457 H-----AYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYA 531 (618)
T ss_dssp H-----HHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred H-----HHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 1 1346667777753 22334455789999998751 000 000011123455556554 4678999999
Q ss_pred HHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhc
Q psy15604 598 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 598 ~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 648 (986)
++++..+....++.+..+. ..|-....+.+++++..|+..++.+..
T Consensus 532 lta~~Kl~~~~~~~~~~l~-----~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 532 LTAIMKLSTRFTCTVNRIK-----KVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHTTCSSCHHHHH-----HHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcchHHHHH-----HHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 9999999988776544433 223334556789999999988877765
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.34 E-value=1.4e-10 Score=122.92 Aligned_cols=226 Identities=10% Similarity=0.008 Sum_probs=176.3
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 571 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 571 (986)
...++.|+..|.++++.++..|+.+|.++.. ++.++.|+.++.+. ++.++..++++|..+...+....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccch
Confidence 5679999999999999999999999998862 35788899988764 88999999999999865322211
Q ss_pred hhhccCChHHHH-HhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 572 AIFKSGGIPALV-KLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 572 ~i~~~~~i~~Lv-~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
. .++.|. .+++++++.++..++++|+++....+.. ....++.|+.++.++++.++..++++|.++..
T Consensus 90 ~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 90 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 1 223333 2457889999999999999998443221 12457889999999999999999999987653
Q ss_pred cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15604 651 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 651 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nL 730 (986)
...++.|..++.+++ ..++..++++|..+.... ..+++.|..++.++++.++..++++|+++
T Consensus 158 ---------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPN-GDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp ----------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHcCCC-HHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 257889999998877 568888999998885321 24678899999999999999999999998
Q ss_pred hcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 731 SDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 731 s~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
.+ ...++.|...+.++ +++..|+++|+++
T Consensus 220 ~~--------~~~~~~L~~~l~d~--~vr~~a~~aL~~i 248 (280)
T 1oyz_A 220 KD--------KRVLSVLCDELKKN--TVYDDIIEAAGEL 248 (280)
T ss_dssp TC--------GGGHHHHHHHHTSS--SCCHHHHHHHHHH
T ss_pred CC--------HhhHHHHHHHhcCc--cHHHHHHHHHHhc
Confidence 63 46788899998764 4889999999854
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.31 E-value=4e-10 Score=119.37 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=171.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccchhh
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGLLA 572 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~~~ 572 (986)
.++.+++++.++++.++..|+.+|..+....... ..+++.|.+.+..+.++.++..++++|.++.. .+..
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~--- 125 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY--- 125 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG---
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc---
Confidence 3788899999999999999999999886433211 12334444333345589999999999999974 2211
Q ss_pred hhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcc
Q psy15604 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE 652 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~ 652 (986)
....++.|+.+++++++.++..++++|+++.. .++++.|+.++.++++.++..++++|..+....+
T Consensus 126 --~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~- 191 (280)
T 1oyz_A 126 --SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS- 191 (280)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-
T ss_pred --cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-
Confidence 22457899999999999999999999998762 3589999999999999999999999999854321
Q ss_pred cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15604 653 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 732 (986)
Q Consensus 653 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~ 732 (986)
..++.|..++.+.+ ..++..++++|..+.. ..+++.|...+.+++ ++..+.++|+++.+
T Consensus 192 --------~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 --------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp --------HHHHHHHHHTTCSC-HHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 35678888888777 6778888999988862 357888999988754 88899999998864
Q ss_pred ccccccchhchHHHHHHHhcc-CChhhHHHHHHHHhh
Q psy15604 733 AGTKVDGLESLLQSLVQLLAS-QDINVITCAAGVTVC 768 (986)
Q Consensus 733 ~~~~~~~~~~~l~~L~~ll~~-~~~~i~~~a~~~L~n 768 (986)
...++.|..++.+ .+++++..+...|.+
T Consensus 251 --------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 --------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp --------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred --------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 3678999999875 477888887777753
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.28 E-value=3.4e-08 Score=115.99 Aligned_cols=486 Identities=13% Similarity=0.100 Sum_probs=284.1
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchH
Q psy15604 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 199 (986)
Q Consensus 120 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 199 (986)
..+....++++.+++...++.+-..+..++.... +.+.- .+..+.+-|++ +++.++-.|+.+|+++.. ++
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~L---~iN~l~kDl~~-~n~~ir~lALr~L~~i~~-~e--- 142 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIRL---INNAIKNDLAS-RNPTFMGLALHCIANVGS-RE--- 142 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHHH---HHHHHHHHHHS-CCHHHHHHHHHHHHHHCC-HH---
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHHH---HHHHHHHhcCC-CCHHHHHHHHHHhhccCC-HH---
Confidence 3467888899999999999999888888886532 11111 23455555665 689999999999999954 33
Q ss_pred HHHhcCChHHHHHhh--CCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Q psy15604 200 AIFKSGGIPALVKLL--SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 277 (986)
Q Consensus 200 ~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~ 277 (986)
+.+ ..++.+.++| .+.++.++..|+.++.++...+++.. ...+.++.+..+|.+.++.++..+..++..++..
T Consensus 143 -~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 143 -MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp -HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 222 3567888999 88899999999999999997554332 2247899999999988999999999999999876
Q ss_pred ChhhHHHHHhCCCHHHHHHHHh----cC-C-----------hHHHHHHHHHHHHHhhhCCC-ChHHHHHh--ccHHHHHH
Q psy15604 278 NQESKLIILASQGPVELVRIMR----SY-D-----------YEKLLWCTSRVLKVLSVCSS-NKPAIVEA--GGMQALAM 338 (986)
Q Consensus 278 ~~~~~~~~~~~g~v~~L~~ll~----~~-~-----------~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~--g~l~~L~~ 338 (986)
++.. + ...++.+++.+. .+ . .+=.+. .+|..++.... ......+. ..+..++.
T Consensus 218 ~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi---~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 218 NPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV---KLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp CHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH---HHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred ChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH---HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 6531 1 123444444333 11 0 121222 23333332111 00111000 01111111
Q ss_pred HhCCCCHHHHHHHHHHHhcccccccccccccCCc--hHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhH
Q psy15604 339 HLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEI--ENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416 (986)
Q Consensus 339 ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~ 416 (986)
.+.+. +.. ..+...+ ..+...|++++..+..+
T Consensus 290 ~~~~~------------------~ks-~~l~~~n~~~aVl~ea~~~i~~l~~~--------------------------- 323 (621)
T 2vgl_A 290 KAQEP------------------PKS-KKVQHSNAKNAVLFEAISLIIHHDSE--------------------------- 323 (621)
T ss_dssp HHHSC------------------CSC-SSHHHHHHHHHHHHHHHHHHHHHCCC---------------------------
T ss_pred hhccC------------------ccc-ccccccchHHHHHHHHHHHHHhcCCc---------------------------
Confidence 00000 000 0000000 01122222222221100
Q ss_pred HHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHH
Q psy15604 417 EILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIP 496 (986)
Q Consensus 417 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~ 496 (986)
+ .+...++.
T Consensus 324 -------------------------------------------------------~----------------~~~~~~~~ 332 (621)
T 2vgl_A 324 -------------------------------------------------------P----------------NLLVRACN 332 (621)
T ss_dssp -------------------------------------------------------H----------------HHHHHHHH
T ss_pred -------------------------------------------------------H----------------HHHHHHHH
Confidence 0 00012255
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhcc
Q psy15604 497 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKS 576 (986)
Q Consensus 497 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~ 576 (986)
.|..++.+.++.++..++..|..+........ .+. .....++.+|..++++.++..++.+|..++.. ++...+
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~-~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~I--- 405 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHE-AVK--THIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQI--- 405 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-HHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHH---
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHH-HHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHH---
Confidence 66677778888888888888888876543211 222 45667777777345788999999998888753 333333
Q ss_pred CChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 577 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 577 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
+..|...+...+.+++..++.+++.++...++.... .+..|++++......+...+...+..+...+|+.+..
T Consensus 406 --v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~ 478 (621)
T 2vgl_A 406 --VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY 478 (621)
T ss_dssp --HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHH
T ss_pred --HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHH
Confidence 356667777778889999999999888654433222 2466777776544344455556666666655665544
Q ss_pred HHhCCChHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc
Q psy15604 657 ILASQGPVELVRIMRSYD-YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT 735 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~ 735 (986)
. +..++..+.++. .+.+...+.|+++.-+..-.+...+.-...+..+...+...++.++..++.++..+....+
T Consensus 479 ~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 479 A-----AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp H-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred H-----HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh
Confidence 3 446777777653 2355566778887764321111000000124456666677788999999999888874322
Q ss_pred cccchhchHHHHH-HHhc--cCChhhHHHHHHHHh
Q psy15604 736 KVDGLESLLQSLV-QLLA--SQDINVITCAAGVTV 767 (986)
Q Consensus 736 ~~~~~~~~l~~L~-~ll~--~~~~~i~~~a~~~L~ 767 (986)
. ....+..++ .... +.|.++|.-|+....
T Consensus 554 ~---~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 554 E---VKATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp G---GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1 122233333 2333 779999998887764
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=5.3e-10 Score=112.74 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=158.3
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChH
Q psy15604 534 PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 613 (986)
Q Consensus 534 ~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 613 (986)
++.++.|+..|.+ +++.++..+++.|..+.. ..+++.|+.+|.++++.++..++++|+.+.
T Consensus 18 ~~~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQD-DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 4789999999975 589999999999998743 357899999999999999999999999986
Q ss_pred HHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC
Q psy15604 614 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 693 (986)
Q Consensus 614 ~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~ 693 (986)
..+.++.|+.++.++++.++..++++|..+.. ...++.|.+++.+++ ..++..++++|..+..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDED-WFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC--
Confidence 24678999999999999999999999998864 246788999898777 6677888999988853
Q ss_pred CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCc
Q psy15604 694 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGV 773 (986)
Q Consensus 694 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~ 773 (986)
...++.|..++.++++.++..++++|+++.+ ...++.|..+++++++.+|..|..+|.++....
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 2478889999999999999999999999853 567889999999999999999999999765543
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.18 E-value=1.1e-09 Score=109.51 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=156.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHH
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 614 (986)
+..+.++..|.+. ++.++..|+++|..+.. ...++.|+.+|.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 6678899999765 89999999999998753 2578999999999999999999999999862
Q ss_pred HHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC
Q psy15604 615 VRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 694 (986)
Q Consensus 615 v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~ 694 (986)
...++.|+.++.++++.++..++++|..+... ..++.|..++.+++ ..++..++++|..+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDED-WFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC---
Confidence 36789999999999999999999999987542 46788888888776 6678888999988853
Q ss_pred CchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 695 NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 695 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
...++.|..++.++++.++..++++|+++.+ ...++.|..+++++++.+|..|.++|.++
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999843 46788999999999999999999999865
No 60
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.15 E-value=1.5e-08 Score=119.08 Aligned_cols=470 Identities=12% Similarity=0.066 Sum_probs=277.9
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~ 157 (986)
+....++++.+++...++.+--++ ..++... .+.+ .=++..+.+-+.++++.++..|+++|+++...+
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l---~~~~~~~--~e~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e----- 142 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFI---SVLVNSN--SELI--RLINNAIKNDLASRNPTFMGLALHCIANVGSRE----- 142 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHH---HHSCCCC--HHHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH-----
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHH---HHHccCC--cHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH-----
Confidence 577788899999999887654433 2222221 1111 114567788888999999999999999996532
Q ss_pred hhhCCchHHHHHHHH--hcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcC
Q psy15604 158 IMNSPQMVAALVHAI--SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH 235 (986)
Q Consensus 158 i~~~~~~i~~Lv~lL--~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 235 (986)
+.+. +++.+.++| .+ .++.+|..|+.++.++....+ +.+-..+.++.+..+|.+.++.++..|+.+|..++..
T Consensus 143 ~~~~--l~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 143 MAEA--FAGEIPKILVAGD-TMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHH--HTTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 3332 457777888 54 699999999999999977521 2222247899999999999999999999999999965
Q ss_pred CCCchHHHHHcCcHHHHHHHhc----cC-------------CHHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHH
Q psy15604 236 QEGSKMAVRLAGGLQKMVLLLG----RN-------------NVKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRI 297 (986)
Q Consensus 236 ~~~~~~~i~~~g~i~~L~~ll~----~~-------------~~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~l 297 (986)
++. .+ ...++.+++.|. .. ++-.+......+..++. ++++.+..+.+ .++.++..
T Consensus 218 ~~~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~ 290 (621)
T 2vgl_A 218 NPE---EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNK 290 (621)
T ss_dssp CHH---HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHH
T ss_pred ChH---HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHh
Confidence 532 11 134455544442 21 46677776777776664 34555544332 22333322
Q ss_pred Hhc-C--------C-hHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccccc----
Q psy15604 298 MRS-Y--------D-YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT---- 363 (986)
Q Consensus 298 l~~-~--------~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~---- 363 (986)
+.. + + ...+...+.+++..+. .. ..+. ..++..|..++.++++.++..++.+|..+....+
T Consensus 291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~-~~~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~ 365 (621)
T 2vgl_A 291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SE-PNLL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA 365 (621)
T ss_dssp HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CC-HHHH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred hccCcccccccccchHHHHHHHHHHHHHhcC---Cc-HHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH
Confidence 211 1 1 1246666777776664 22 2222 2456778888888888999999988888765532
Q ss_pred -------cccccc-CCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHHHHHHHHHHHHhhcccccc
Q psy15604 364 -------KVSLLF-NEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIH 435 (986)
Q Consensus 364 -------~i~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~ 435 (986)
.+..+. ++++.++..+..+|..++.. ++...+ +..|...+...+...+..+...+ ..++
T Consensus 366 ~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I--~~la----- 432 (621)
T 2vgl_A 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQI-----VAEMLSYLETADYSIREEIVLKV--AILA----- 432 (621)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHH-----HHHHHHHHHHCCHHHHHHHHHHH--HHHH-----
T ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHH-----HHHHHHHHHhcCHHHHHHHHHHH--HHHH-----
Confidence 134456 78888999999999988743 333332 34555666555544443332222 1111
Q ss_pred ccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHH
Q psy15604 436 RGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAM 515 (986)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 515 (986)
.++.... ...+..+++++......+...+..
T Consensus 433 -----------------------------~k~~~~~--------------------~~~v~~Ll~ll~~~~~~v~~ev~~ 463 (621)
T 2vgl_A 433 -----------------------------EKYAVDY--------------------TWYVDTILNLIRIAGDYVSEEVWY 463 (621)
T ss_dssp -----------------------------HHHCSST--------------------HHHHHHHHHHHHHHGGGSCSHHHH
T ss_pred -----------------------------HhcCCcH--------------------HHHHHHHHHHHHhhcccchHHHHH
Confidence 0000000 011344444444332223333344
Q ss_pred HHHHhhhccccchhhhcccCcHHHHHHhhcCCCC-HHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHH
Q psy15604 516 MVHQLSKKEASRHAIMNSPQMVAALVHAISNSND-LETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVL 594 (986)
Q Consensus 516 ~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~-~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~ 594 (986)
.+.++....+..+. ..+..+++.+..... ..+...++|+++..+..-.+...+.-...+..+..-+...++.++
T Consensus 464 ~l~~ii~~~~~~~~-----~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~ 538 (621)
T 2vgl_A 464 RVIQIVINRDDVQG-----YAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTR 538 (621)
T ss_dssp HHHHHHGGGCSCHH-----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhCChhHHH-----HHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHH
Confidence 44544333222111 234566676754432 456677889999986511110000000113345555567788999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHhCcHHHHHH-hhc--CCCHhHHHHHHHHHHHHhcC
Q psy15604 595 FYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL-LLG--RNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 595 ~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~-ll~--~~~~~v~~~a~~aL~~L~~~ 649 (986)
.+++.++..+....++.+.. +..+++ ... +.+++++..|+..++-+..+
T Consensus 539 ~~~Lta~~Kl~~~~p~~~~~------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 539 ALLLSTYIKFVNLFPEVKAT------IQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHHHHHHHHHHCGGGHHH------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHChHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 99999999998766543322 222222 223 67899999999888877654
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.14 E-value=1.3e-09 Score=109.91 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=156.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 571 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 571 (986)
.+.++.|++.|+++++.++..|+..|..+.. ++.++.|+.++.+. ++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-DAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC------
Confidence 4568999999999999999999999988643 26789999999764 89999999999999853
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
.+.++.|+.+|+++++.++..++++|+++.. .+.++.|+.++.++++.++..++++|..+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3578999999999999999999999999862 3578999999999999999999999999853
Q ss_pred ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15604 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs 731 (986)
...++.|..++.+++ ..++..+.++|..+.. ..+++.|..++.++++.++..|..+|.++.
T Consensus 142 --------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDED-GWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 146788889997777 6778888899988853 346778888999999999999999999987
Q ss_pred cc
Q psy15604 732 DA 733 (986)
Q Consensus 732 ~~ 733 (986)
..
T Consensus 203 ~~ 204 (211)
T 3ltm_A 203 SF 204 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.13 E-value=7.4e-09 Score=118.51 Aligned_cols=273 Identities=10% Similarity=0.065 Sum_probs=190.8
Q ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHhhhccc--cchhhhcccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhCC-
Q psy15604 493 RAIPELIKLLNDE--DQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSN-DLETTKGAVGTLHNLSHH- 566 (986)
Q Consensus 493 ~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~--~~~~l~~~~~~i~~L~~lL~~~~-~~~~~~~a~~~L~~ls~~- 566 (986)
..++.++..+.++ ++.++..++.+|..++.... ...... ..+++.+...+.+.. ++.++..+++++.++...
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4478888899888 99999999999999986431 122222 257788888887654 689999999999997642
Q ss_pred ccch-hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHH
Q psy15604 567 RQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG-SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQ 644 (986)
Q Consensus 567 ~~~~-~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~ 644 (986)
.+.. ......-.++.+...+.+++++++..++.+|..++...+. .+..+. .+.++.++..+++.++.++..+++.+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1111 0111111366677778889999999999999999976543 122111 156777778888889999999999998
Q ss_pred HHhcCCc-----------------ccHHHHHh---CCChHHHHHHHhcC------ChhHHHHHHHHHHHHhhcCCCCchh
Q psy15604 645 ILAYGNQ-----------------ESKLIILA---SQGPVELVRIMRSY------DYEKLLWCTSRVLKVLSVCSSNKPA 698 (986)
Q Consensus 645 ~L~~~~~-----------------~~~~~~~~---~~~~~~L~~ll~~~------~~~~~~~~~~~~L~~Ls~~~~~~~~ 698 (986)
.++.... .....+.+ ...++.+++.+... +....+..+..+|..++..-. ..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 8875310 00000111 22345555666432 112567788899999876543 12
Q ss_pred HHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccc-c--ccchhchHHHHHHHhccCChhhHHHHHHHHhhhcc
Q psy15604 699 IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT-K--VDGLESLLQSLVQLLASQDINVITCAAGVTVCQVG 771 (986)
Q Consensus 699 l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~-~--~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~ 771 (986)
++ ...++.+...+.+++..++..++.+++.++.... + ......+++.++..++++++.+|..|||+|++++.
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22 2467778888899999999999999999996443 2 12346899999999999999999999999997654
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.09 E-value=3.4e-09 Score=105.81 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=154.8
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 571 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 571 (986)
.+..+.+++.|+++++.++..|+..|..+.. .+.++.|+..|.+ +++.++..++++|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD-EDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC------
Confidence 3447889999999999999999999987653 2568899999965 489999999999998843
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
..+++.|+.+|.++++.++..|+++|+++.. ...++.|+.++.++++.++..++++|..+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2578999999999999999999999999862 3578889999999999999999999999853
Q ss_pred ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15604 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs 731 (986)
...++.|..++.+++ ..++..+.++|..+.. ..+++.|..++.++++.++..+..+|.++.
T Consensus 137 --------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDED-GWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 246788889998776 6678888899888842 236778888888899999999999999875
No 64
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.00 E-value=1.9e-08 Score=115.04 Aligned_cols=380 Identities=12% Similarity=0.050 Sum_probs=228.8
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC--CHhHHHHHHHHHHHHhcCCCCchH-----------H
Q psy15604 176 NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP--VESVLFYAITTLHNLLLHQEGSKM-----------A 242 (986)
Q Consensus 176 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~-----------~ 242 (986)
+|..+|..|-..|.++... + ..+.+..|..++.++ ++.++..|+..|.|+...+..... .
T Consensus 13 ~d~~~r~~Ae~~L~~~~~~--~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~ 85 (462)
T 1ibr_B 13 PDRLELEAAQKFLERAAVE--N-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA 85 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHhh--C-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCH
Confidence 5889999999999887542 0 123556677777654 678999999999999843311100 0
Q ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCC-hHHHHHHHHHHHHHhhhCC
Q psy15604 243 VRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD-YEKLLWCTSRVLKVLSVCS 321 (986)
Q Consensus 243 i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~~~~~~a~~aL~~Ls~~~ 321 (986)
-.....-..|+..+.+.++.+ ..++.++..++....... .-.+.++.|+..+.+++ +..+++.++.+|..+....
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence 011223345778888877778 888899998876321100 12467889999998872 3448888899998887532
Q ss_pred C-ChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhC-h-hhHHHHHh
Q psy15604 322 S-NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQD-K-EGAETIEA 398 (986)
Q Consensus 322 ~-~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~-~-~~~~~l~~ 398 (986)
. ..-.-.-...++.+...+.+.. .++.++..++.++.++... + ........
T Consensus 162 ~~~~~~~~~~~ll~~l~~~l~~~~--------------------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 215 (462)
T 1ibr_B 162 DPEQLQDKSNEILTAIIQGMRKEE--------------------------PSNNVKLAATNALLNSLEFTKANFDKESER 215 (462)
T ss_dssp CGGGTGGGHHHHHHHHHHHHSTTC--------------------------CCHHHHHHHHHHHHHHTTTTHHHHTSHHHH
T ss_pred CchhhHhHHHHHHHHHHHHhCCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 1 1000011235566666666540 1334445555555443211 0 00000000
Q ss_pred cCCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHH
Q psy15604 399 EGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAV 478 (986)
Q Consensus 399 ~g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~ 478 (986)
.-.++.+...+.+.+..++..+..++..+ ... +++. +.+
T Consensus 216 ~~l~~~l~~~~~~~~~~vr~~~~~~l~~l--~~~--------~~~~-----------~~~-------------------- 254 (462)
T 1ibr_B 216 HFIMQVVCEATQCPDTRVRVAALQNLVKI--MSL--------YYQY-----------MET-------------------- 254 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHH--HHH--------CGGG-----------CTT--------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HHH--------HHHH-----------HHH--------------------
Confidence 01244555556666666665555444111 100 0000 000
Q ss_pred HHHhcCCchhhhhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc------------------cchhhhc--ccCcH
Q psy15604 479 VNLINYQDDADLAT-RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA------------------SRHAIMN--SPQMV 537 (986)
Q Consensus 479 ~~l~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------~~~~l~~--~~~~i 537 (986)
... ..++.++..+++.++.++..++..+..++.... ....++. -+.++
T Consensus 255 -----------~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 255 -----------YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (462)
T ss_dssp -----------TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence 001 335566667778888999999888888765420 1111111 02467
Q ss_pred HHHHHhhcCC------CCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCC-
Q psy15604 538 AALVHAISNS------NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG- 610 (986)
Q Consensus 538 ~~L~~lL~~~------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~- 610 (986)
|.++..+... ++..++..|+.+|..++..-. ..+. ...++.+...+++++..++..|+.+|+.++.....
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 7777777432 235789999999999987221 1111 34567788889999999999999999999975431
Q ss_pred -ChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcC
Q psy15604 611 -SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 611 -~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~ 649 (986)
.+..+ ..+++.++..+.++++.++..++|+|.+++..
T Consensus 401 ~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 401 QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 22222 56789999999999999999999999999874
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.92 E-value=1.1e-07 Score=113.32 Aligned_cols=193 Identities=14% Similarity=0.161 Sum_probs=150.3
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHH-HHHhcCCCHHHHHHHHHHHHhhccC--ccch
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV-HAISNSNDLETTKGAVGTLHNLSHH--RQGL 198 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~~a~~~L~~ls~~--~~~~ 198 (986)
.|.+++..|+++++..|..|+.+|.+|+.++..+..+...++ +..++ .+|.+ ++.++|..|+++|.||+.+ ++.+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~-v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQV-VHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTH-HHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-HHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchHH
Confidence 556677889999999999999999999999899999998876 46654 55665 6899999999999999876 6788
Q ss_pred HHHHhcCChHHHHHhhCCCC---------------------HhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc
Q psy15604 199 LAIFKSGGIPALVKLLSSPV---------------------ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG 257 (986)
Q Consensus 199 ~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 257 (986)
..++..|++++|..++.... .++...++.+|.+||.++......+...++++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999998884210 124456788999999777777778888999999999985
Q ss_pred c---CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHH---HHHHHhcCChHHHHHHHHHHHHHhh
Q psy15604 258 R---NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVE---LVRIMRSYDYEKLLWCTSRVLKVLS 318 (986)
Q Consensus 258 ~---~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~---L~~ll~~~~~~~~~~~a~~aL~~Ls 318 (986)
+ ....++..++.+|..++.++++....+.+.+.... +..+.+..+ . .+..++..|.++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~-~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-P-RAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-T-THHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-H-HHHHHHHHHHhHh
Confidence 4 34678899999999999999888888888775433 332223333 2 3445567777764
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.73 E-value=0.0014 Score=77.71 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=167.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
++.|...+.+++...+..|+.+|+.+-....+ ..++..|++.+..+.+..+++.++.+|+.+....
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~------- 539 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGR------- 539 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-------
Confidence 56677778777777777788888866333321 2566777777655667889999999999886632
Q ss_pred ccCChHHHHHhcC-CCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhh-cCCCHhHHHHHHHHHHHHhcCCcc
Q psy15604 575 KSGGIPALVKLLS-SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL-GRNNVKFLAIVTDCLQILAYGNQE 652 (986)
Q Consensus 575 ~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll-~~~~~~v~~~a~~aL~~L~~~~~~ 652 (986)
...++.+++.|. +.++-++..++.+++--..... . ..+++.|+..+ .+.++.+++.|..+|..+..+++
T Consensus 540 -~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG-n------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 540 -QELADDLITKMLASDESLLRYGGAFTIALAYAGTG-N------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp -GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC-C------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 235677777765 5677788877777764443322 2 23355555554 35678899999999999887753
Q ss_pred cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy15604 653 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 732 (986)
Q Consensus 653 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~ 732 (986)
..++.++..+.+..+..++..+..+|..++.+..+. .+++.|..+..+++..|+.+|+.+|+.+..
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 346677776665555889999999999998776532 245677788888999999999999999985
Q ss_pred ccccc--cchhchHHHHHHHhcc--CChhhHHHHHHHHhhhccC
Q psy15604 733 AGTKV--DGLESLLQSLVQLLAS--QDINVITCAAGVTVCQVGG 772 (986)
Q Consensus 733 ~~~~~--~~~~~~l~~L~~ll~~--~~~~i~~~a~~~L~ni~~g 772 (986)
...+. +....++..|..+..+ .|+..+-.+.-+.+-+-+|
T Consensus 677 gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 677 QQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp TCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred CCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 54433 3556788888888865 4666776666666533333
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.51 E-value=2.1e-07 Score=110.73 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=148.0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHH-hhcCCCCHHHHHHHHHHHHHhhC--Cccc
Q psy15604 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVH-AISNSNDLETTKGAVGTLHNLSH--HRQG 569 (986)
Q Consensus 493 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~-lL~~~~~~~~~~~a~~~L~~ls~--~~~~ 569 (986)
..+.++++.|+++++..|..|+.+|.+++.++..+..+... ++|..++. +|. +.+.+++.+|+++|.||+. .++.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~-~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLRE-QVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHc-CCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCchH
Confidence 34666778899999999999999999999877777777775 77776655 454 4589999999999999987 4577
Q ss_pred hhhhhccCChHHHHHhcCCCCH---------------------hHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhh
Q psy15604 570 LLAIFKSGGIPALVKLLSSPVE---------------------SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL 628 (986)
Q Consensus 570 ~~~i~~~~~i~~Lv~lL~~~~~---------------------~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll 628 (986)
+..+++.|++++|..+++.... ++..+++.+|.+||..++.....+...++++.|+..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 8889999999999998753111 3446788899999987777777788889999999887
Q ss_pred cC---CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChH---HHHHHHhcCChhHHHHHHHHHHHHhh
Q psy15604 629 GR---NNVKFLAIVTDCLQILAYGNQESKLIILASQGPV---ELVRIMRSYDYEKLLWCTSRVLKVLS 690 (986)
Q Consensus 629 ~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~---~L~~ll~~~~~~~~~~~~~~~L~~Ls 690 (986)
.+ ...++...++.+|..++.++++....+.+.+... .+..+..+.+. .+..+++.|.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~--~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP--RAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT--THHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH--HHHHHHHHHHhHh
Confidence 44 2568999999999999998877777777765432 22222233332 3446778888874
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.41 E-value=6.5e-06 Score=78.75 Aligned_cols=184 Identities=16% Similarity=0.116 Sum_probs=150.2
Q ss_pred CChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 577 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 577 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
+.+..|..+|++.++.++.+++.+|..+....+..-....-...++.++.++++++.++.-.|..||..|..+.|-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 45778899999999999999999999999876553333333678999999999999999999999999999988777777
Q ss_pred HHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhccccc
Q psy15604 657 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK 736 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~ 736 (986)
+.. ....+..++.+++ +.+...+...+..+...... .+++..+.+++.+++..++..+++++-|++....+
T Consensus 113 y~K--l~~aL~dlik~~~-~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPD-DMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHTTSCC-HHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHhcCCC-chHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 764 5678888888766 66667777888888332211 23567788889999999999999999999977766
Q ss_pred ccchhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 737 VDGLESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 737 ~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
-....+++.-+..++++.|+.+++-|...+-+|
T Consensus 184 ~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 184 SGHLTLILDEIPSLLQNDNEFIVELALDVLEKA 216 (265)
T ss_dssp CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 666678888899999999999999999998754
No 69
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.38 E-value=6.4e-05 Score=81.44 Aligned_cols=353 Identities=14% Similarity=0.162 Sum_probs=193.3
Q ss_pred CchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcc---chHHH-HhcCCh-HHHHH-hhCCCCHhHHHHHHHHHHHHhcC
Q psy15604 162 PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ---GLLAI-FKSGGI-PALVK-LLSSPVESVLFYAITTLHNLLLH 235 (986)
Q Consensus 162 ~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~---~~~~i-~~~g~i-~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~ 235 (986)
+.....++++|+...+.++.+..+..+..|...+. .+..+ .+..-. ..+.. .+..+++-.+..+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 34568899999988899999999999999988754 33334 333222 12332 33333333445555555666533
Q ss_pred CCCchHHHHHcCcHH--HHHHHhcc-CCHHHHHHHHHHHHHHhccChhhHHHHHhCCC--HHHHHHHHhcC---------
Q psy15604 236 QEGSKMAVRLAGGLQ--KMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQG--PVELVRIMRSY--------- 301 (986)
Q Consensus 236 ~~~~~~~i~~~g~i~--~L~~ll~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~--v~~L~~ll~~~--------- 301 (986)
.......+ .+.+. .++..|.. .+...+..++.+|..|.. .++.|..+.+.++ +++++.+++..
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 32211111 11222 45555554 334556688899998887 5678988877654 56666554421
Q ss_pred -------ChHHHHHHHHHHHHHhhhCCCChHHHHHhccH--HHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCc
Q psy15604 302 -------DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGM--QALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEI 372 (986)
Q Consensus 302 -------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l--~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~ 372 (986)
..-.+.+.++-++|.|+..+...+.+...+.. ..|+..++. +..
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~---------------------------s~K 285 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI---------------------------TIK 285 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH---------------------------CCS
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHh---------------------------hcc
Confidence 12346788999999999776655566655532 444444433 344
Q ss_pred hHHHHHHHHHHHHHhhCh-----hhHH-HHHhcCCcHHHHHHhccCc---hhHHHHHHHHHHHHhhcccccccccccccc
Q psy15604 373 ENIQRVAAGLLCELAQDK-----EGAE-TIEAEGATAPLTDLLHSRN---EGVEILIQGVHKIFKIHKINIHRGCLMFPE 443 (986)
Q Consensus 373 ~~~~~~a~~~L~~l~~~~-----~~~~-~l~~~g~l~~Lv~ll~~~~---~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 443 (986)
+.+-+.+..+|.|+.... .... .+...+++ .++..|.... ++...-...+.
T Consensus 286 EKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~------------------- 345 (480)
T 1ho8_A 286 EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLK------------------- 345 (480)
T ss_dssp HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHH-------------------
T ss_pred chhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHH-------------------
Confidence 566666666777765332 1122 23233443 3444443321 11111111111
Q ss_pred chhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCc-hhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Q psy15604 444 TLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQD-DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK 522 (986)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 522 (986)
+.+...+..+.++.. ..++..|.+.. ---+.++..-. -|..+
T Consensus 346 ----------------------------e~L~~~~~~ltsfDeY~~El~sG~L~W---SP~H~se~FW~------ENa~k 388 (480)
T 1ho8_A 346 ----------------------------EILENEYQELTSFDEYVAELDSKLLCW---SPPHVDNGFWS------DNIDE 388 (480)
T ss_dssp ----------------------------HHHHHHHHTCCHHHHHHHHHHHTCCCC---CGGGGCHHHHH------HHSGG
T ss_pred ----------------------------HHHHHHHHhcccHHHHHHHHhcCCccc---CCCccchhHHH------HHHHH
Confidence 001111111111000 00000111000 00000111100 01111
Q ss_pred ccccchhhhcccCcHHHHHHhhcC---------CCCHHHHHHHHHHHHHhhC-CccchhhhhccCChHHHHHhcCCCCHh
Q psy15604 523 KEASRHAIMNSPQMVAALVHAISN---------SNDLETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALVKLLSSPVES 592 (986)
Q Consensus 523 ~~~~~~~l~~~~~~i~~L~~lL~~---------~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 592 (986)
... +.-.+++.|+++|.+ +.++.+..-|+.=++.+.. .|+++..+-+.|+=+.+.+++.+++++
T Consensus 389 f~e------~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~ 462 (480)
T 1ho8_A 389 FKK------DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSR 462 (480)
T ss_dssp GSS------GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHH
T ss_pred HHh------cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHH
Confidence 111 112567888888863 2367777778888888887 888998888899999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy15604 593 VLFYAITTLHNLLLH 607 (986)
Q Consensus 593 v~~~a~~aL~nl~~~ 607 (986)
|+.+|+.+++.+..+
T Consensus 463 Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 463 VKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.21 E-value=0.00071 Score=80.22 Aligned_cols=311 Identities=13% Similarity=0.044 Sum_probs=192.6
Q ss_pred ChHHHHHhhC---CCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCC--------HHHHHHHHHHHHHH
Q psy15604 206 GIPALVKLLS---SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN--------VKFLAIVTDCLQIL 274 (986)
Q Consensus 206 ~i~~Lv~lL~---~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~a~~aL~~L 274 (986)
++..|-..|. ++++.++.-|+.+|+-+..+.. . .++..|...+.+++ +.++..++..|+..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4555666665 5567788888888888875542 1 14667777776544 56777777888776
Q ss_pred hccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHH
Q psy15604 275 AYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 354 (986)
Q Consensus 275 a~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~ 354 (986)
..+.. .. .+++.|..++...+. ..++.++-+|..+.....|...+ ..|+..+.+
T Consensus 465 ~~GS~-~e------ev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai------~~LL~~~~e------------ 518 (963)
T 4ady_A 465 AMGSA-NI------EVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAI------HDMFTYSQE------------ 518 (963)
T ss_dssp STTCC-CH------HHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHH------------
T ss_pred hcCCC-CH------HHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHH------HHHHHHHhc------------
Confidence 54332 11 134677888876654 35556666666554333443222 333333211
Q ss_pred HhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhcc-CchhHHHHHHHHHHHHhhcccc
Q psy15604 355 LRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHS-RNEGVEILIQGVHKIFKIHKIN 433 (986)
Q Consensus 355 L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~-~~~~~~~~~~~~~al~~~~~~~ 433 (986)
..++.+++.++.+|+.+.... ...++.+++.+.. .+..++..+..++++. ++
T Consensus 519 ---------------~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglA-ya--- 571 (963)
T 4ady_A 519 ---------------TQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALA-YA--- 571 (963)
T ss_dssp ---------------CSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHH-TT---
T ss_pred ---------------cCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc---
Confidence 345678888888888775322 1245666666654 4555555444333222 00
Q ss_pred ccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHH-hcCCCHHHHHH
Q psy15604 434 IHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKL-LNDEDQVVVSQ 512 (986)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~ 512 (986)
. .+. ..++..|+.. ..+.+..+|..
T Consensus 572 ---------G--------------TGn-------------------------------~~aIq~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 572 ---------G--------------TGN-------------------------------NSAVKRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp ---------T--------------SCC-------------------------------HHHHHHHHHHHHHCSCHHHHHH
T ss_pred ---------C--------------CCC-------------------------------HHHHHHHHHHhccCCcHHHHHH
Confidence 0 000 1125545554 34667889999
Q ss_pred HHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHh
Q psy15604 513 AAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVES 592 (986)
Q Consensus 513 a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 592 (986)
|+.+|+.+...+. ..++.++..|....++.+++.++.+|+.++...... .++..|..+++++++.
T Consensus 598 AViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 598 AVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHH
T ss_pred HHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHH
Confidence 9999998765542 457888887777779999999999999998743322 2467888899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCh-HHHHHhCcHHHHHHhhcC--CCHhHHHHHHHHHHHHhc
Q psy15604 593 VLFYAITTLHNLLLHQEGSK-MAVRLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAY 648 (986)
Q Consensus 593 v~~~a~~aL~nl~~~~~~~~-~~v~~~g~v~~Lv~ll~~--~~~~v~~~a~~aL~~L~~ 648 (986)
|+..|+.+|+.+.....+.. ..+ .+....|...... .++..+..+.-+...+..
T Consensus 663 Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 663 VRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 99999999999997655431 111 1234455665543 466666666666666654
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.16 E-value=0.029 Score=69.85 Aligned_cols=256 Identities=10% Similarity=0.063 Sum_probs=137.1
Q ss_pred HhcCC---CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCcc---------
Q psy15604 501 LLNDE---DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ--------- 568 (986)
Q Consensus 501 ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~--------- 568 (986)
.+.++ .+.+|..|+++++.++..-. .... ..+++.++..|.+. ++.++..|+++|.+++...+
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HhcCCCCCCceehHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccc
Confidence 34555 89999999999999976531 1222 25677888888654 78899999999999987321
Q ss_pred chhhhhc--cCChHHHHHhcCCCC---Hh--HHHHHHHHHHHhhcCC-CCChHHHHHhCcHHHHHHhh----cC-CCHhH
Q psy15604 569 GLLAIFK--SGGIPALVKLLSSPV---ES--VLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLL----GR-NNVKF 635 (986)
Q Consensus 569 ~~~~i~~--~~~i~~Lv~lL~~~~---~~--v~~~a~~aL~nl~~~~-~~~~~~v~~~g~v~~Lv~ll----~~-~~~~v 635 (986)
.+..+.. ...++.|..++.... ++ ..+.+..+|..++... +.....+ ...++.|+..+ ++ +++.+
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHH
T ss_pred cHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHH
Confidence 1222221 223344455555531 11 3355666666655332 2222211 12334444443 22 35667
Q ss_pred HHHHHHHHHHHhcCC-cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCCchhHHhcCcHHHHH--Hh
Q psy15604 636 LAIVTDCLQILAYGN-QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-SSNKPAIVEAGGMQALA--MH 711 (986)
Q Consensus 636 ~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-~~~~~~l~~~g~~~~L~--~l 711 (986)
...++.++..++... ++.... +.....+.+..+|.... .+....+..++..+... ......+. ...+.+. ..
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~l~~~~~ 691 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNV 691 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGG
T ss_pred HHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHhccCCCHHHH--HHHHHHcCHHH
Confidence 777888999888753 333333 33356677777777553 23334455555544322 11112111 1334444 33
Q ss_pred hCCCCHHHHHHHHHHHHHhhcccc-cccchhchHHHHHHHhccCChhhHHHHHHHHhhhcc
Q psy15604 712 LGHPSQRLVQNCLWTLRNLSDAGT-KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVG 771 (986)
Q Consensus 712 l~~~~~~v~~~al~~L~nLs~~~~-~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~ 771 (986)
+... ......+.+|.+...... .......++..+..++.+... ...++++++.|+.
T Consensus 692 ~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~ 748 (960)
T 1wa5_C 692 WELK--GNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIML 748 (960)
T ss_dssp GCCT--TTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHH
T ss_pred hcCC--CCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHH
Confidence 4333 244456677777653222 111123344445555555442 3778888886544
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.14 E-value=0.00031 Score=67.39 Aligned_cols=217 Identities=14% Similarity=0.035 Sum_probs=159.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-ccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChH
Q psy15604 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 613 (986)
Q Consensus 535 ~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 613 (986)
+.+..+.++|.. .|+.++..+..+|..+-.. +.......-...++.++.++++.++.+.-.|+.+|..+..+.+-...
T Consensus 33 ~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 567778888854 5899999999999999773 33333333456789999999999999999999999999988776666
Q ss_pred HHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC
Q psy15604 614 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 693 (986)
Q Consensus 614 ~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~ 693 (986)
... ..+.+|.++++++++-+...++..+..+.--+ ..+ .....+.+++.+.+ ..+...+.++|.+++..+
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~------~V~~~l~sLl~Skd-~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSK------LVRTYINELVVSPD-LYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCH------HHHHHHHHHHTCSS-HHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chH------HHHHHHHHHHhCCC-hhHHHHHHHHHHHhhccc
Confidence 554 56788999999999999999999999983321 111 34567888886666 677789999999998876
Q ss_pred CCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccc---hhchHHHHHHHh-ccCChhhHHHHHH
Q psy15604 694 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDG---LESLLQSLVQLL-ASQDINVITCAAG 764 (986)
Q Consensus 694 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~---~~~~l~~L~~ll-~~~~~~i~~~a~~ 764 (986)
.++..+ .+++.-+-.++++.++.++..|+..+-++...+-.... ..++....-.+. ....|.++..|-.
T Consensus 182 ~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 182 ADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp SSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 655433 24566688899999999999999999999866543211 113333333333 3445666655443
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.05 E-value=0.018 Score=71.72 Aligned_cols=251 Identities=11% Similarity=0.024 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhCCccchhhhhcc-----
Q psy15604 507 QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN-----SNDLETTKGAVGTLHNLSHHRQGLLAIFKS----- 576 (986)
Q Consensus 507 ~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~-----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~----- 576 (986)
...+..|...|..++..-. ..++. .+++.+...+.. ..+...++.|..+++.++..-.....-.+.
T Consensus 375 ~s~R~aa~~~L~~l~~~~~--~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE--VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH--HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred cCcHHHHHHHHHHHHHHcc--hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 3566777788877766543 12211 233444444431 235678888999999997521111100000
Q ss_pred CChHH----HHHhcCCC---CHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcC
Q psy15604 577 GGIPA----LVKLLSSP---VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 577 ~~i~~----Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~ 649 (986)
...+. ++..++++ .+-+|..|+|+++.++..-. .+. -...++.++..+.++++.|+..||++|.+++..
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 12222 33345666 78999999999999986542 222 245678888888888899999999999999873
Q ss_pred C-------cc-cHHHHHhC---CChHHHHHHHhcCC--hhH--HHHHHHHHHHHhhcC--CCCchhHHhcCcHHHHHHhh
Q psy15604 650 N-------QE-SKLIILAS---QGPVELVRIMRSYD--YEK--LLWCTSRVLKVLSVC--SSNKPAIVEAGGMQALAMHL 712 (986)
Q Consensus 650 ~-------~~-~~~~~~~~---~~~~~L~~ll~~~~--~~~--~~~~~~~~L~~Ls~~--~~~~~~l~~~g~~~~L~~ll 712 (986)
. ++ .+..+ .+ ..+..|..++.... +.. ....+..++..+... ....+.+. ..++.|...+
T Consensus 527 ~~~~~~~~~~~~~~~l-~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l 603 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDI-SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIV 603 (960)
T ss_dssp BSCSSSCCBSSCGGGT-TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHH
T ss_pred ccccccccccccHHHh-hhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHH
Confidence 1 11 11111 11 23455556666541 000 112233344333221 11112111 2344444433
Q ss_pred ----CCC-CHHHHHHHHHHHHHhhcccc---cccchhchHHHHHHHhccCChhhHHHHHHHHhh
Q psy15604 713 ----GHP-SQRLVQNCLWTLRNLSDAGT---KVDGLESLLQSLVQLLASQDINVITCAAGVTVC 768 (986)
Q Consensus 713 ----~~~-~~~v~~~al~~L~nLs~~~~---~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~n 768 (986)
.++ ++.....++.+|+.+..... .......+++.+...+.....+...++..+++.
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 333 45666667888887774411 122334677777788877666777777777764
No 74
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.04 E-value=0.00029 Score=76.33 Aligned_cols=307 Identities=13% Similarity=0.169 Sum_probs=186.6
Q ss_pred hHHHHHHHHhcCCChhHHhhHHHHHHHhhcChh---hHHHHHhcCCcHHHHHHHHhhhcCCCc-------ccc-cc----
Q psy15604 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ---GLLAIFKSGGIPALVKLLSKTLVTASS-------NNT-LI---- 67 (986)
Q Consensus 3 ~~~~lv~~l~~~~d~~~~~~a~~~L~~l~~~~~---~~~~i~~~g~i~~Ll~ll~~~l~~~~~-------~~~-~~---- 67 (986)
.+..++.+|+.....++.+..+..+..+..++. .+..++....-+.- .+....+...+. ... .+
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~-~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLE-QLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHH-HHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccch-HHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 457789999988889999999999999987543 55555443322211 122210000000 000 00
Q ss_pred cccccccccCcHH--HHHHHhcCC-ChhhHHHHHhHHHHHHHhcCCCcchhHHHhCC--CHHHHHHHHcc----C-----
Q psy15604 68 LQDDADLATRAIP--ELIKLLNDE-DQDDADLATRAIPELIKLLNDEDQDDADLATR--AIPELIKLLND----E----- 133 (986)
Q Consensus 68 ~~~~~~~~~g~i~--~l~~ll~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g--~i~~L~~ll~~----~----- 133 (986)
..+.. .-.+.+. .++..+++. +.+.+..++.+|..+.. .++.|..+.+.+ .++.++..++. .
T Consensus 157 ~~~~~-~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~---~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 157 LHNVK-LVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV---IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TCCHH-HHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT---SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CccHh-HHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc---chhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 00000 0001222 455556553 33445566676655554 666777776543 35666554431 1
Q ss_pred --------CHHHHHHHHHHHHHhcccCcchhHhhhCCchH--HHHHHHHhcCCCHHHHHHHHHHHHhhccCc-cch----
Q psy15604 134 --------DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMV--AALVHAISNSNDLETTKGAVGTLHNLSHHR-QGL---- 198 (986)
Q Consensus 134 --------~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i--~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~-~~~---- 198 (986)
...++++++-+++-|+.++...+.+...+ +. +.|+.+++.+.-+.+.+-++.+|.|+.... .+.
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~-i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKY-LSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcc-hHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 24568999999999999988888887654 32 667777888778999999999999998763 222
Q ss_pred H-HHHhcCChHHHHHhhCC---CCHhHHHHHHHH---H----HHHh--------------cCCCCchH---------HHH
Q psy15604 199 L-AIFKSGGIPALVKLLSS---PVESVLFYAITT---L----HNLL--------------LHQEGSKM---------AVR 244 (986)
Q Consensus 199 ~-~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~---L----~~L~--------------~~~~~~~~---------~i~ 244 (986)
. .++..++ +.++..|+. .|+++....-.. | ..++ .-+|..+. .+.
T Consensus 312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2 2333344 455555543 366654332211 1 1111 11111111 011
Q ss_pred H--cCcHHHHHHHhcc----------CCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHH
Q psy15604 245 L--AGGLQKMVLLLGR----------NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSR 312 (986)
Q Consensus 245 ~--~g~i~~L~~ll~~----------~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~ 312 (986)
+ ...+..|+++|++ .++.+...||.=++.++...|+.|..+-+-|+-+.+++++.+++++ +++.|+.
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~-Vr~~AL~ 469 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSR-VKYEALK 469 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHH-HHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHH-HHHHHHH
Confidence 1 2246788999973 3577888899999999999999999998899999999999987765 8998888
Q ss_pred HHHHh
Q psy15604 313 VLKVL 317 (986)
Q Consensus 313 aL~~L 317 (986)
++..+
T Consensus 470 avQkl 474 (480)
T 1ho8_A 470 ATQAI 474 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77544
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.01 E-value=0.00014 Score=77.19 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=159.2
Q ss_pred HHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHH
Q psy15604 100 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE 179 (986)
Q Consensus 100 aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~ 179 (986)
++..+..+...++..............++++.++|...++.+--.+.+++..+ .+.|. .+..|.+=+++ +++-
T Consensus 47 ~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~--~e~iL----v~Nsl~kDl~~-~N~~ 119 (355)
T 3tjz_B 47 ILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA--EDVII----VTSSLTKDMTG-KEDS 119 (355)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS--SCGGG----GHHHHHHHHHS-SCHH
T ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH--HHHHH----HHHHHHhhcCC-CcHh
Confidence 44444443333433333333445566788999999999999988888888763 23332 24566666776 6899
Q ss_pred HHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccC
Q psy15604 180 TTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN 259 (986)
Q Consensus 180 ~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~ 259 (986)
+|-.|+++|+++...+ ..+ ...+.+.+.+.+.++.++..|+.+..++...+++ .+ .+.+..+-.++.+.
T Consensus 120 iR~lALRtL~~I~~~~-m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v--~~~~~~l~~ll~d~ 188 (355)
T 3tjz_B 120 YRGPAVRALCQITDST-MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV--KRWVNEAQEAASSD 188 (355)
T ss_dssp HHHHHHHHHHHHCCTT-THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCCCHH-HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHHhcCC
Confidence 9999999999995543 222 2455677888999999999999999999955443 23 37899999999999
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhh-CCCChHHHHHhccHHHHHH
Q psy15604 260 NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV-CSSNKPAIVEAGGMQALAM 338 (986)
Q Consensus 260 ~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~L~~ 338 (986)
++.++..+..+|..+...+.. .+..|+.-+...... -.+.-...+..++. .+.+ ..-.....++.+..
T Consensus 189 n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~-~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~ 257 (355)
T 3tjz_B 189 NIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLK-SPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIES 257 (355)
T ss_dssp SHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCS-CHHHHHHHHHHHTCC------------------C
T ss_pred CccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCc-ChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHH
Confidence 999999888888888764431 234445544442110 01222233443332 1111 01122345667777
Q ss_pred HhCCCCHHHHHHHHHHHhcccccccc---------cccccCCchHHHHHHHHHHHHHhh-ChhhHHHHHhcCCcHHHHHH
Q psy15604 339 HLGHPSQRLVQNCLWTLRNLSDAGTK---------VSLLFNEIENIQRVAAGLLCELAQ-DKEGAETIEAEGATAPLTDL 408 (986)
Q Consensus 339 ll~~~~~~~~~~~~~~L~~ls~~~~~---------i~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~l~~Lv~l 408 (986)
.|.+.++.+..+|+.++..+...+.. ..++.+.++.+|..|.+.|..+.. +|..-. ..-..+.++
T Consensus 258 ~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~l 332 (355)
T 3tjz_B 258 CLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENL 332 (355)
T ss_dssp CCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------
T ss_pred HHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHH
Confidence 78899999999999999998664322 234557888899999998888764 332211 133455666
Q ss_pred hccCchhHHH
Q psy15604 409 LHSRNEGVEI 418 (986)
Q Consensus 409 l~~~~~~~~~ 418 (986)
+.+++..+..
T Consensus 333 i~d~n~sI~t 342 (355)
T 3tjz_B 333 VTDANRSIAT 342 (355)
T ss_dssp ----------
T ss_pred ccCCcHhHHH
Confidence 7666655543
No 76
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.95 E-value=0.077 Score=66.14 Aligned_cols=276 Identities=12% Similarity=0.091 Sum_probs=142.8
Q ss_pred hhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhCC
Q psy15604 489 DLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHH 566 (986)
Q Consensus 489 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~-~~~~~~~~a~~~L~~ls~~ 566 (986)
..-...++.++..+.+ +.++..|+.+|.+++..-.. ....+ +.++..+..++... -+...+.....++..++..
T Consensus 525 ~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 525 VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 3446778888888854 78999999999999864321 22222 24555666666543 2567888888888888762
Q ss_pred -c-cchhhhhccCChHHHHHhc----CC-CCHhHHH---HHHHHHHHhhcCCCC-------------------ChH--HH
Q psy15604 567 -R-QGLLAIFKSGGIPALVKLL----SS-PVESVLF---YAITTLHNLLLHQEG-------------------SKM--AV 615 (986)
Q Consensus 567 -~-~~~~~i~~~~~i~~Lv~lL----~~-~~~~v~~---~a~~aL~nl~~~~~~-------------------~~~--~v 615 (986)
+ +.....+ ...++++...+ +. .+++.+. ..+.+|+.+...-.. .+. .-
T Consensus 601 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (963)
T 2x19_B 601 LQVEEILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV 679 (963)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH
Confidence 2 2222211 22333333333 22 2444443 334444444432110 001 11
Q ss_pred HHhCcHHHHHHhhcC--CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCC
Q psy15604 616 RLAGGLQKMVLLLGR--NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 693 (986)
Q Consensus 616 ~~~g~v~~Lv~ll~~--~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~ 693 (986)
.....++.+..++.. .++.+...++.+++.++..-.+.-..++. ..++.++..................+......+
T Consensus 680 ~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 680 VLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVP-QLCEMLGRMYSTIPQASALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHH-HHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCc
Confidence 123344555555543 46788889999999876421111111111 112222222333221222222222222222222
Q ss_pred CCchhHHh--cCcHHHHHHhhC---CCCHHHHHHHHHHHHHhhccccccc----c-hhchHHHHHHHhccCChhhHHHHH
Q psy15604 694 SNKPAIVE--AGGMQALAMHLG---HPSQRLVQNCLWTLRNLSDAGTKVD----G-LESLLQSLVQLLASQDINVITCAA 763 (986)
Q Consensus 694 ~~~~~l~~--~g~~~~L~~ll~---~~~~~v~~~al~~L~nLs~~~~~~~----~-~~~~l~~L~~ll~~~~~~i~~~a~ 763 (986)
.....+.. ...+..+..++. ...++++......+..+........ . ...+++.+...+.+.+..+.+.++
T Consensus 759 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l 838 (963)
T 2x19_B 759 AHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASC 838 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12222221 112223333332 2358999999999988884333221 1 456777788888888999999999
Q ss_pred HHHhhhc
Q psy15604 764 GVTVCQV 770 (986)
Q Consensus 764 ~~L~ni~ 770 (986)
+.+.++.
T Consensus 839 ~~l~~l~ 845 (963)
T 2x19_B 839 GFFTELL 845 (963)
T ss_dssp HHHHHHG
T ss_pred HHHHHHH
Confidence 9998654
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.93 E-value=8.6e-05 Score=75.95 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=134.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhc-cccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 496 PELIKLLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 496 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
+.+.+.+.+.+...|..|+..|..+... +.....-. ..+++.|...+..+.+..++..++.++..++..-.....-.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3577788899999999999999998765 32111111 25677788888534589999999999999986211111111
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC-cc-
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN-QE- 652 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~-~~- 652 (986)
-...+|.++..+.++++.++..+..+|.+++.... + ...++.+...+++.++.++..++..|..+.... ++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23468999999999999999999999999986442 1 235677888899999999999999999965432 33
Q ss_pred cHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q psy15604 653 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 691 (986)
Q Consensus 653 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~ 691 (986)
.-...+. ..++.|+.++.+.+ ..++..+..+++.+..
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPD-PTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSC-HHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Confidence 1122233 46888888998777 6677888888888754
No 78
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.90 E-value=0.04 Score=68.78 Aligned_cols=257 Identities=10% Similarity=0.039 Sum_probs=132.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhCC-c-cch
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHH-R-QGL 570 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~-~~~~~~~~a~~~L~~ls~~-~-~~~ 570 (986)
++.++..+. +.++..|+.++.+++..-.. ....+ +.++..+..++... -+.+.+.....++..++.. + +..
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 566666662 67889999999999864321 22222 25666777777653 2567788888888888652 1 222
Q ss_pred hhhhccCChHHHH----HhcCCC--CHhHHHHHHHHHHHhh---cCCC--------------CChHHHHHhCcHHHHHHh
Q psy15604 571 LAIFKSGGIPALV----KLLSSP--VESVLFYAITTLHNLL---LHQE--------------GSKMAVRLAGGLQKMVLL 627 (986)
Q Consensus 571 ~~i~~~~~i~~Lv----~lL~~~--~~~v~~~a~~aL~nl~---~~~~--------------~~~~~v~~~g~v~~Lv~l 627 (986)
...+ ...+++++ ..++.+ +++-+.....++..++ ..-. ..... ....++.+..+
T Consensus 623 ~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~ 699 (971)
T 2x1g_F 623 PKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV--MQRTMPIFKRI 699 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH--HHTTHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH--HHHHHHHHHHH
Confidence 2211 11223333 333333 3333333333333332 2110 11111 24566777676
Q ss_pred hcC--CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHH----HhcCChhHHHHHHHHHHHHhhcCC----CCch
Q psy15604 628 LGR--NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRI----MRSYDYEKLLWCTSRVLKVLSVCS----SNKP 697 (986)
Q Consensus 628 l~~--~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~l----l~~~~~~~~~~~~~~~L~~Ls~~~----~~~~ 697 (986)
+.. .++.+.+.++++++.++..-.+. + . ..++.++.. +.+.... ...+++..+...- ....
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~~~~~---~-~-p~l~~~~~~l~~~~~~~~~~----~~l~l~~~~i~~~~~~~~~~~ 770 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITNLRSS---F-Q-PMLQDLCLFIVASFQTRCCA----PTLEISKTAIVMFFKDEGCKP 770 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC------C-THHHHHHHHHHHHCC--CCH----HHHHHHHHHHTTCCC-----H
T ss_pred HHhccccHHHHHHHHHHHHHHHHhhhhh---c-c-ccHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCCcchHH
Confidence 653 36789999999999977521010 0 0 123334443 3332222 2344444443321 1111
Q ss_pred hHHh--cCcHHHHHHhhCCC-------CHHHHHHHHHHHHHhhcccccccc-----hhchHHHHHHHhccCChhhHHHHH
Q psy15604 698 AIVE--AGGMQALAMHLGHP-------SQRLVQNCLWTLRNLSDAGTKVDG-----LESLLQSLVQLLASQDINVITCAA 763 (986)
Q Consensus 698 ~l~~--~g~~~~L~~ll~~~-------~~~v~~~al~~L~nLs~~~~~~~~-----~~~~l~~L~~ll~~~~~~i~~~a~ 763 (986)
.+.+ .........++... +++++......+..+......... ...+++..+..+...++...+.++
T Consensus 771 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~ 850 (971)
T 2x1g_F 771 LMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSI 850 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1211 11223333444432 578888888888888754443322 345555555666667777888888
Q ss_pred HHHhh
Q psy15604 764 GVTVC 768 (986)
Q Consensus 764 ~~L~n 768 (986)
..+++
T Consensus 851 ~fl~~ 855 (971)
T 2x1g_F 851 QFLTH 855 (971)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 79
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.90 E-value=0.00014 Score=74.33 Aligned_cols=182 Identities=12% Similarity=0.086 Sum_probs=133.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc-CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc--cchHH
Q psy15604 124 PELIKLLNDEDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR--QGLLA 200 (986)
Q Consensus 124 ~~L~~ll~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~--~~~~~ 200 (986)
+.+...+.+.+...|..++..|..+... +..... ..+.+++.|...+....+..++..|+.+|..|+..- .....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3477888999999999999999998865 332111 112356778888852379999999999999998752 22221
Q ss_pred HHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhcc-Ch
Q psy15604 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQ 279 (986)
Q Consensus 201 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~-~~ 279 (986)
-...+|.++..+.++++.++..+..+|.+++... .. ...++.+...+++.++.++..+...|..+... .+
T Consensus 96 --~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 --ASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp --HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2247899999999999999999999999999432 21 13578888999989999999999999986442 23
Q ss_pred h--hHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Q psy15604 280 E--SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 280 ~--~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~ 319 (986)
+ ....+ ...++.|+.++.....+ ++..+..++..+..
T Consensus 167 ~~~~~~~l--~~l~p~l~~~l~D~~~~-VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLL--KLLTTSLVKTLNEPDPT-VRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHH--HHHHHHHHHHHTSSCHH-HHHHHHHHHHHHHH
T ss_pred CCccHHHH--HHHHHHHHHHhcCCChH-HHHHHHHHHHHHHH
Confidence 2 12222 24678889999876665 88888888877653
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=1.8e-06 Score=78.82 Aligned_cols=118 Identities=8% Similarity=-0.015 Sum_probs=57.3
Q ss_pred CChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHH
Q psy15604 577 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLI 656 (986)
Q Consensus 577 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 656 (986)
..++.++.+|+++++.++..|+++|+++.. ..++.|+.+++++++.++..++++|.++...
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------
Confidence 445566666666666666666666654421 1145666666666666666666666555321
Q ss_pred HHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q psy15604 657 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728 (986)
Q Consensus 657 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~ 728 (986)
..++.|..++.+++ ..++..++++|..+.. ..+++.|..++.++++.++..+.++|+
T Consensus 73 ----~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 ----RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23445555555444 3444555555555431 123445555555555555555555544
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.86 E-value=4.8e-06 Score=75.98 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=91.4
Q ss_pred hCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCch
Q psy15604 618 AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP 697 (986)
Q Consensus 618 ~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~ 697 (986)
...++.++.+|+++++.++..++++|..+.. ..++.|++++.+++ ..++..++++|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~-~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNED-WRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSC-HHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCC-HHHHHHHHHHHHhcCC------
Confidence 4567788999999999999888888875532 13678889998776 6788888889888753
Q ss_pred hHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 698 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 698 ~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
..+++.|..++.++++.++..++++|+++.+ ...++.|..+++++++.++..|+++|++|
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2357889999999999999999999999863 46789999999999999999999999753
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.80 E-value=0.00031 Score=74.62 Aligned_cols=254 Identities=13% Similarity=0.076 Sum_probs=154.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 574 (986)
....++++.++|...+.-.-..+..++...+. .++ ++..+.+=+++. ++-++-.|.++|+++...+ ...
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~iL----v~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~-m~~--- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VII----VTSSLTKDMTGK-EDSYRGPAVRALCQITDST-MLQ--- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GGG----GHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTT-THH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HHH----HHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHH-HHH---
Confidence 45667899999999998888888777766432 122 244555556554 7889999999999996532 111
Q ss_pred ccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 575 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 575 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
...+.+.+.+.+.++.|+..|+.+..++....++ .+ .+.+..+-+++.+.++.++..+..+|..+...+ +
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---~ 208 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---R 208 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---H
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---h
Confidence 2346677888999999999999999999865543 33 378999999999999999999999999988642 1
Q ss_pred HHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhccc
Q psy15604 655 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG 734 (986)
Q Consensus 655 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~ 734 (986)
. .+..++.-+..... .-.+.-+..+.+++..-.....-.....++.|...++|.++.|...|++++-.+.+..
T Consensus 209 ~------a~~kLv~~l~~~~l-~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 209 L------AVSKMISKFTRHGL-KSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp H------HHHHHHHHHHSSCC-SCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred H------HHHHHHHHHhcCCC-cChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 1 23344444443210 0123444555555432111101122346677888889999999999999999987633
Q ss_pred ccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHH
Q psy15604 735 TKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQ 778 (986)
Q Consensus 735 ~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~ 778 (986)
.... ...+..|..++.++++++|-.|...|.-+....|+.++
T Consensus 282 ~~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~ 323 (355)
T 3tjz_B 282 AKEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT 323 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred HHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH
Confidence 3321 23345667788899999999999888766665555444
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0012 Score=67.27 Aligned_cols=192 Identities=9% Similarity=0.031 Sum_probs=132.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hccc-CcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-c-cchH-H
Q psy15604 126 LIKLLNDEDQVVVSQAAMMVHQ-LSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-R-QGLL-A 200 (986)
Q Consensus 126 L~~ll~~~~~~~~~~a~~~L~~-la~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-~-~~~~-~ 200 (986)
+...+.+.+..-|..++..|.. +... +.....-...+.++..|.+.+....+..++..|+.+|..|+.. . ..-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5677789999999999999999 8643 3222111121235677788884447899999999999999864 2 1111 1
Q ss_pred HHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChh
Q psy15604 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE 280 (986)
Q Consensus 201 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~ 280 (986)
.. .-.+|.++..+.+..+.++..+..+|..++...+.....-.-...++.|+..+++.++.++..+..+|..++...+.
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 11 23789999999999999999998888888853321110000012577888999989999999999999988764332
Q ss_pred h-HH--HHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Q psy15604 281 S-KL--IILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 281 ~-~~--~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~ 319 (986)
. .. .......++.|.+++...+.+ ++.++..++..+..
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~-VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPA-IRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHH-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Confidence 1 11 112357789999999776655 99999888877753
No 84
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.51 E-value=0.016 Score=72.43 Aligned_cols=167 Identities=11% Similarity=-0.068 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC-----CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHH
Q psy15604 593 VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-----NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELV 667 (986)
Q Consensus 593 v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~-----~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~ 667 (986)
.+..+..+|..++...+ +.+. .-.++.+-..+.+ .+...+..+..++..++.+-.+.. ...++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~---~~~l-~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLN---DYIL-EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCT---THHH-HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---HHHH-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence 45666667777764333 1111 1112223333332 456678889999999887532211 12334444
Q ss_pred HHH---hcC-ChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccc--cchh
Q psy15604 668 RIM---RSY-DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKV--DGLE 741 (986)
Q Consensus 668 ~ll---~~~-~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~--~~~~ 741 (986)
.++ ... ....++..++|+++.++..-......+. .+++.|+..+ + +.++..|++++.+++...... ....
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~ 583 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD 583 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 433 211 2467888999999988754221111111 3566677767 2 789999999999999543321 2345
Q ss_pred chHHHHHHHhccC--ChhhHHHHHHHHhhhccC
Q psy15604 742 SLLQSLVQLLASQ--DINVITCAAGVTVCQVGG 772 (986)
Q Consensus 742 ~~l~~L~~ll~~~--~~~i~~~a~~~L~ni~~g 772 (986)
.++..+..++... +.+.+.....+++.++..
T Consensus 584 ~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 584 PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 7777777778763 567888888888876543
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.50 E-value=0.12 Score=63.86 Aligned_cols=140 Identities=4% Similarity=-0.077 Sum_probs=86.0
Q ss_pred CCHhHHHHHHHHHHHHhcCCccc-HHHHHhCCChHHHHHHHhcCC---h-hHHHHHHHHHHHHhhcCCCCchhHHhcCcH
Q psy15604 631 NNVKFLAIVTDCLQILAYGNQES-KLIILASQGPVELVRIMRSYD---Y-EKLLWCTSRVLKVLSVCSSNKPAIVEAGGM 705 (986)
Q Consensus 631 ~~~~v~~~a~~aL~~L~~~~~~~-~~~~~~~~~~~~L~~ll~~~~---~-~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~ 705 (986)
.+-..+..++|+++.++.+-.+. ...++. ..++.|+.++.+.. + ..++..++|+++..+..-......+. .++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence 46788999999999998763322 222332 46778888876421 1 22334566777765443222223332 366
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhccccc-c---------cchhchHHHHHHHhccCChhhHHHHHHHHhhhccC
Q psy15604 706 QALAMHLGHPSQRLVQNCLWTLRNLSDAGTK-V---------DGLESLLQSLVQLLASQDINVITCAAGVTVCQVGG 772 (986)
Q Consensus 706 ~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~-~---------~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g 772 (986)
..|...+..+++.++..|++++.+|+..... . +....++..+.......++.-+.....+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6777777777899999999999999954332 1 12234444555555555666666777777765554
No 86
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.001 Score=67.75 Aligned_cols=193 Identities=9% Similarity=0.009 Sum_probs=133.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hhhccccchh-hhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--C-ccchh
Q psy15604 497 ELIKLLNDEDQVVVSQAAMMVHQ-LSKKEASRHA-IMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--H-RQGLL 571 (986)
Q Consensus 497 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~-l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~-~~~~~ 571 (986)
.+...+.+.+...|..|+..|.. +......... ...-..++..|...+..+.+..++..|+.+|..++. . +....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556788999999999999999 8643211110 111125677888888545588999999999999986 2 22220
Q ss_pred hhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc
Q psy15604 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 572 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~ 651 (986)
-.-.-.+|.++..+.+..+.++..+..+|..++...++....-.-...++.|...+++.++.++..+..+|..++...+
T Consensus 100 -~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 -DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp -HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1112368899999999999999999999999987543211100001346778888999999999999999999887543
Q ss_pred cc--HH-HHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q psy15604 652 ES--KL-IILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 691 (986)
Q Consensus 652 ~~--~~-~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~ 691 (986)
.. .. ..+....++.|.+++.+.+ ..++..+..++..+..
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 21 11 2232578889999998777 6788888888887753
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.023 Score=52.11 Aligned_cols=214 Identities=14% Similarity=0.119 Sum_probs=151.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC-Cccch
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH-HRQGL 570 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~-~~~~~ 570 (986)
...+..++++|.++-..+|.+|+..+..++..-..... ..+..|+.+++.++...+..+.+.+++.++. .|+-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 44478899999999999999999999999876543211 3456777777777787777778889999987 55544
Q ss_pred hhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCC
Q psy15604 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 571 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 650 (986)
.. .+|.+..-++-++++++.+-..+|..++..+|..- .+++.-+..++.+++..-+..+...+..+.
T Consensus 106 ~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~alG--- 172 (253)
T 2db0_A 106 KS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIEAMG--- 172 (253)
T ss_dssp HH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCC---
T ss_pred Hh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHh---
Confidence 33 45777777788899999999999999997776422 344566778888887655555554444443
Q ss_pred cccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15604 651 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 651 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nL 730 (986)
++....+.+ .++.|..+|.+.+ +.++..+..+|.+++...+--.. ++..-+.-+.+.|..++...-..|..|
T Consensus 173 -en~~~yv~P-fLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npklRk-----ii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 173 -ENSFKYVNP-FLPRIINLLHDGD-EIVRASAVEALVHLATLNDKLRK-----VVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp -TTTHHHHGG-GHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHHHHH-----HHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred -ccCccccCc-chHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHHHHH-----HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 333344443 5778888898877 88888889999999875432111 333445556777777777766666655
Q ss_pred h
Q psy15604 731 S 731 (986)
Q Consensus 731 s 731 (986)
.
T Consensus 245 ~ 245 (253)
T 2db0_A 245 L 245 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 88
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.40 E-value=0.26 Score=60.68 Aligned_cols=218 Identities=10% Similarity=0.050 Sum_probs=121.2
Q ss_pred HHHhcCCChhHHhhHHHHHHHhhcChhhHHHHHhcCCcHHHHHHHHhhhcCCCcccccccccccccccCcHHHHHHHhcC
Q psy15604 9 HAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLND 88 (986)
Q Consensus 9 ~~l~~~~d~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Ll~ll~~~l~~~~~~~~~~~~~~~~~~~g~i~~l~~ll~~ 88 (986)
..+..+.|++.|++|-..|..+-.+++ +......++..
T Consensus 14 ~~~~p~sd~~~r~~A~~~L~~~q~sp~------------------------------------------aw~~~~~iL~~ 51 (980)
T 3ibv_A 14 AALDPSVGPIIKQQATDFIGSLRSSST------------------------------------------GWKICHEIFSE 51 (980)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHHSTT------------------------------------------HHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHcChh------------------------------------------HHHHHHHHHhC
Confidence 455555577888888877777765443 33333444432
Q ss_pred C---ChhhHHHHHhHHHHHHHhcCCCcc--hhHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcccCcchhHhhhCC
Q psy15604 89 E---DQDDADLATRAIPELIKLLNDEDQ--DDADLATRAIPELIKLL-NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP 162 (986)
Q Consensus 89 ~---~~~~~~~a~~aL~~l~~~~~~~~~--~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~ 162 (986)
. +.+.+..|+..|....+.+..++. .+..+....+..+...- ..+.+.++...+.++..++...-. . .=+
T Consensus 52 ~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~---~Wp 127 (980)
T 3ibv_A 52 KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S---NWN 127 (980)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T---TCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c---cCc
Confidence 2 456666777766665552111100 12222222222222210 023467888889999888865311 1 113
Q ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---------cc--c-----hHHHHhcC---ChHHHHHhh----CCCCH
Q psy15604 163 QMVAALVHAISNSNDLETTKGAVGTLHNLSHH---------RQ--G-----LLAIFKSG---GIPALVKLL----SSPVE 219 (986)
Q Consensus 163 ~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~---------~~--~-----~~~i~~~g---~i~~Lv~lL----~~~~~ 219 (986)
.+++.++.++..+.........+.+|..++.. ++ . ++.+.+.. +++....+| .+.++
T Consensus 128 ~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~ 207 (980)
T 3ibv_A 128 DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNY 207 (980)
T ss_dssp THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCH
Confidence 46788888887632213444555555533222 00 0 22232210 133333444 34678
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 220 SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 220 ~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
+++..++.+|......- .-..+.....++.+.+++.. +.++..|+.+|..+..
T Consensus 208 ~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHH
Confidence 88899999998888432 23455666778888888864 7899999999999975
No 89
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.033 Score=51.14 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=130.9
Q ss_pred hcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhccChhh
Q psy15604 203 KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG-RNNVKFLAIVTDCLQILAYGNQES 281 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~aL~~La~~~~~~ 281 (986)
+...+..++.+|.+.-.-++.+|+..+.+++...++..... +..|+.+++ ++.-......+.+++.++.-.|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 34467788889988888899999999999996666544333 455666654 455666566788999999877765
Q ss_pred HHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhccccc
Q psy15604 282 KLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA 361 (986)
Q Consensus 282 ~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~ 361 (986)
... .+|.+..-.+-+++ +.+.....+|..++.. |. ..-.++..-+..++.+++..-+..++..+..+..+
T Consensus 105 v~~-----vVp~lfanyrigd~-kikIn~~yaLeeIara--nP--~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDE-KTKINVSYALEEIAKA--NP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSH-HHHHHHHHHHHHHHHH--CH--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HHh-----hHHHHHHHHhcCCc-cceecHHHHHHHHHHh--Ch--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 543 35777776676754 4888888888777631 11 22234566677888888888888888888888776
Q ss_pred cc---------ccccccCCchHHHHHHHHHHHHHh-hChhhHHHH
Q psy15604 362 GT---------KVSLLFNEIENIQRVAAGLLCELA-QDKEGAETI 396 (986)
Q Consensus 362 ~~---------~i~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l 396 (986)
+. .+.++...++-++..+.++|.+++ .++..|+.+
T Consensus 175 ~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 64 288999999999999999999998 456666654
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.37 E-value=0.0037 Score=64.33 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=120.7
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHH-hcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchh
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIK-LLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~ 156 (986)
-+..+++-|.+.+.+..+.+.. .|.. +..+.+....++..+++..|++.....+.+.+..++++|.++-.+..--.
T Consensus 119 ra~~iiekL~~~~~~~lr~aLf---sLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLF---SLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH---HHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHH---HHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccccc
Confidence 3556667777767666665444 4554 33677788899999999999999999999999999999999988765555
Q ss_pred HhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc-cchHHHHhcC----------ChHHHHHhhC---CCCHhHH
Q psy15604 157 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR-QGLLAIFKSG----------GIPALVKLLS---SPVESVL 222 (986)
Q Consensus 157 ~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g----------~i~~Lv~lL~---~~~~~~~ 222 (986)
.+++...+|..+..++.+ .+..+.+.|+..|..+.... .+...+.++- -++.|+.+|+ +.+.+++
T Consensus 196 gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred chhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 666666678999998886 78999999999999998874 4554443321 2779999997 6789999
Q ss_pred HHHHHHHHHHhcCCC
Q psy15604 223 FYAITTLHNLLLHQE 237 (986)
Q Consensus 223 ~~a~~~L~~L~~~~~ 237 (986)
.+|...|..+...-+
T Consensus 275 ~~amtLIN~lL~~ap 289 (339)
T 3dad_A 275 VYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999988877765544
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.30 E-value=0.3 Score=61.30 Aligned_cols=133 Identities=10% Similarity=0.051 Sum_probs=81.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-----ccchHHH
Q psy15604 127 IKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-----RQGLLAI 201 (986)
Q Consensus 127 ~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-----~~~~~~i 201 (986)
+..+-+++...|..|-..|..+...++ +...+..+|.++.+..+|..|+..|.+.... ++.....
T Consensus 22 l~~~~~p~~~~r~~Ae~~L~~~~~~p~----------~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ 91 (1049)
T 3m1i_C 22 VSTFYQGSGVQQKQAQEILTKFQDNPD----------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1049)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHSTT----------GGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhCch----------HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH
Confidence 333345667788888888887766542 2355666676667999999999999987542 2222222
Q ss_pred HhcCChHHHHHhhCCC-----CHhHHHHHHHHHHHHhcCC-CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q psy15604 202 FKSGGIPALVKLLSSP-----VESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275 (986)
Q Consensus 202 ~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La 275 (986)
++...+..+...-..+ ++.++...+.++..++... ++.+ .+.++.|+..++ .++.....+..+|..++
T Consensus 92 ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 3333344443332221 3567777788888877542 2222 245788888886 44555566667777665
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.20 E-value=0.01 Score=61.12 Aligned_cols=174 Identities=14% Similarity=0.184 Sum_probs=122.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-hccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHH
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHN-LSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVR 244 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 244 (986)
..+++-|.+ .+...++.++.-|.. ++.+.+....|+..+|+..|+.+....+...+.+++++|.++-. +.+....++
T Consensus 121 ~~iiekL~~-~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYS-SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHH-CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHHhc-CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchh
Confidence 445555666 467778888889998 66778999999999999999999999999999999999999994 433443444
Q ss_pred -HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhC----------CCHHHHHHHHh---cCChHHHHHHH
Q psy15604 245 -LAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS----------QGPVELVRIMR---SYDYEKLLWCT 310 (986)
Q Consensus 245 -~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~----------g~v~~L~~ll~---~~~~~~~~~~a 310 (986)
....|..+..++.+....+...+...|..++..++.+...+.+. .-.+.|+.+++ ..+.+ ++..+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e-lq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE-LLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH-HHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH-HHHHH
Confidence 45578999999998878888888999988876554333322221 12678999997 33444 67777
Q ss_pred HHHHHHhhhCCCChH---H----HHHhccHHHHHHHhCC
Q psy15604 311 SRVLKVLSVCSSNKP---A----IVEAGGMQALAMHLGH 342 (986)
Q Consensus 311 ~~aL~~Ls~~~~~~~---~----i~~~g~l~~L~~ll~~ 342 (986)
...+..+-......+ . +-+.|.-..+.+.+..
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 776666654333322 2 2334444555565655
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.96 E-value=1.4 Score=54.74 Aligned_cols=137 Identities=11% Similarity=0.044 Sum_probs=89.9
Q ss_pred cCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhc-C-ChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHH
Q psy15604 629 GRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRS-Y-DYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQ 706 (986)
Q Consensus 629 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~-~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~ 706 (986)
.+.+...+..+++++..++.+-.+.. ...++.++..+.. . +...++..++|+++.++..-......+. .+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHH
Confidence 44577888899999999987632211 1223344444321 1 3456888999999887654211123333 5788
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhccccc--ccchhchHHHHHHHhccC--ChhhHHHHHHHHhhhccCc
Q psy15604 707 ALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--VDGLESLLQSLVQLLASQ--DINVITCAAGVTVCQVGGV 773 (986)
Q Consensus 707 ~L~~ll~~~~~~v~~~al~~L~nLs~~~~~--~~~~~~~l~~L~~ll~~~--~~~i~~~a~~~L~ni~~g~ 773 (986)
.|...+.+ +.++..|++++.++++.... ......++..+..++... +.+.+.....+++.++...
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 88888865 88999999999999954332 233457777777777753 5677878888888765433
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.70 E-value=0.17 Score=60.89 Aligned_cols=343 Identities=10% Similarity=0.097 Sum_probs=199.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCC--chHHH
Q psy15604 166 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG--SKMAV 243 (986)
Q Consensus 166 ~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~i 243 (986)
..+++-+..+. ..-+..++..++.+...+..- .....+.++.|...+...... +.|+.++..++..... ....+
T Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 17 EELFQKLSVAT-ADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHHHhhccccc-hhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc
Confidence 34444455432 344456666777775542111 112236777888888765444 8999999999954432 11222
Q ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCC
Q psy15604 244 RLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 322 (986)
Q Consensus 244 ~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~ 322 (986)
. -+.++.++..+.+....++.+|..++..+.. -+++... ..+|.|+..+.+...-..+..++.++..|+....
T Consensus 93 ~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 93 I-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred h-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 2 3578888888888888899988888877754 2343332 2468999999876433377788888888886442
Q ss_pred ChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHh---hChhhHHHHHhc
Q psy15604 323 NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELA---QDKEGAETIEAE 399 (986)
Q Consensus 323 ~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~---~~~~~~~~l~~~ 399 (986)
.+-...-...+|.+...+.+..+ +++..|..++..+| .|.+..
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~----------------------------~v~~~~~~~~~~~~~~~~n~d~~------ 212 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKK----------------------------EVKAAATAAMTKATETVDNKDIE------ 212 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSH----------------------------HHHHHHHHHHHHHGGGCCCTTTG------
T ss_pred HHHHHhccchhcchHhhcccCcH----------------------------HHHHHHHHHHHHHHhcCCCcchh------
Confidence 22222334567777777766444 45555555555544 333332
Q ss_pred CCcHHHHHHhccCchhHHHHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHH
Q psy15604 400 GATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVV 479 (986)
Q Consensus 400 g~l~~Lv~ll~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~ 479 (986)
..+|.|+..+..+.. +...... |. +. +|...-..+ ++
T Consensus 213 ~~~~~~~~~~~~p~~-~~~~~~~---l~----------~~--------------tfv~~v~~~--------------~l- 249 (986)
T 2iw3_A 213 RFIPSLIQCIADPTE-VPETVHL---LG----------AT--------------TFVAEVTPA--------------TL- 249 (986)
T ss_dssp GGHHHHHHHHHCTTH-HHHHHHH---HT----------TC--------------CCCSCCCHH--------------HH-
T ss_pred hhHHHHHHHhcChhh-hHHHHHH---hh----------cC--------------eeEeeecch--------------hH-
Confidence 356778877776633 3221111 11 00 111100000 00
Q ss_pred HHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc---cchhhhcccCcHHHHHHhhcCCCCHHHHHHH
Q psy15604 480 NLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA---SRHAIMNSPQMVAALVHAISNSNDLETTKGA 556 (986)
Q Consensus 480 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a 556 (986)
+=.+|.|.+-|+.....++.+++.++.|+++--. ....++ +..+|.+-.......+|++++.+
T Consensus 250 ------------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 250 ------------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp ------------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred ------------HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence 1116778888888888899999999999987533 244444 47788888877777789999998
Q ss_pred HHHHHHhhC---C-cc-chhhhhccCChH----HHHHhcCCC-----CHhHHHHHHHHHHHhhcCCC
Q psy15604 557 VGTLHNLSH---H-RQ-GLLAIFKSGGIP----ALVKLLSSP-----VESVLFYAITTLHNLLLHQE 609 (986)
Q Consensus 557 ~~~L~~ls~---~-~~-~~~~i~~~~~i~----~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~ 609 (986)
..++..|-. . .+ ........+-+. .+...+... ...+..|++....++.....
T Consensus 316 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 382 (986)
T 2iw3_A 316 LRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI 382 (986)
T ss_dssp HHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccc
Confidence 888887743 1 11 111111122222 233344321 23466777777777775444
No 95
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.36 E-value=3.2 Score=51.11 Aligned_cols=217 Identities=13% Similarity=0.058 Sum_probs=122.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-----ccc
Q psy15604 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-----RQG 197 (986)
Q Consensus 123 i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~-----~~~ 197 (986)
+..++..+-+++...|..|-..|..+-.+++ ....+..+|..+.++.+|..|+.+|.+.... ++.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~----------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD----------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC----------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCch----------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 3445555566778888889888887776652 2344555566667899999999999987652 333
Q ss_pred hHHHHhcCChHHHHHhhCC-----CCHhHHHHHHHHHHHHhcCC-CCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Q psy15604 198 LLAIFKSGGIPALVKLLSS-----PVESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCL 271 (986)
Q Consensus 198 ~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL 271 (986)
...-++...+..+.+.... .++.++...+.++..++... +..+ ...++.++..+.+ ++.........|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 3333344455555554333 24556667777777777432 2222 2456677777653 344445556666
Q ss_pred HHHhcc---C----------hhhHHHHHhCCCHHHHHH----HHhcCChHHHHHHHHHHHHHhhhCCCChHHHHHhccHH
Q psy15604 272 QILAYG---N----------QESKLIILASQGPVELVR----IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQ 334 (986)
Q Consensus 272 ~~La~~---~----------~~~~~~~~~~g~v~~L~~----ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~ 334 (986)
..|... . ...+..+.+. .+.++. ++.......+...++.+|..+..--. ...+.+...++
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~ 250 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLIS 250 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHHH
Confidence 666542 0 1122333332 344443 34444444466666677766654322 24566666666
Q ss_pred HHH-HHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhh
Q psy15604 335 ALA-MHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQ 388 (986)
Q Consensus 335 ~L~-~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~ 388 (986)
.+. .++ .++.++..|+.+|+.+..
T Consensus 251 ~L~~~~L------------------------------~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 251 TLIYKFL------------------------------NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHTS------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------------------------------CChHHHHHHHHHHHHHHh
Confidence 653 433 345667777777777653
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.32 E-value=0.095 Score=57.16 Aligned_cols=242 Identities=13% Similarity=0.049 Sum_probs=159.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc---cchhhhcccCcHHHHHHhhc--CC----C---CHHHHHHHHHHHH
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA---SRHAIMNSPQMVAALVHAIS--NS----N---DLETTKGAVGTLH 561 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~l~~~~~~i~~L~~lL~--~~----~---~~~~~~~a~~~L~ 561 (986)
....|+.-|-++..++|.-|+.+|+.+.+... .+...... +..-.++.+|. .- . -..+++.|+-+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 45677778889999999999999999866543 12211221 44455555542 11 1 1568999999999
Q ss_pred HhhC-CccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHH
Q psy15604 562 NLSH-HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT 640 (986)
Q Consensus 562 ~ls~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~ 640 (986)
.+ . -++. ...+..++..+..+.=+++..++-.|..+ .+- ... -.++++.++..|.+.++.|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL--L~~---Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEF--VED---KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG--CCC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHH--HHH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 5 2222 33455555555777789999999999888 121 111 246678888889999999999999
Q ss_pred HHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCCh-hHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHH
Q psy15604 641 DCLQILAYGNQESKLIILASQGPVELVRIMRSYDY-EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 719 (986)
Q Consensus 641 ~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 719 (986)
.+|.-++. ++.... .+..++..|.+.|+ ..-.......|+.|...+.+. -.....++.|...++|.-+.|
T Consensus 321 etLiPIA~--p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFPI--TDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSCC--SSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhcc--hhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCCcHHH
Confidence 99998882 332222 34566777765431 112234445666666555321 112368899999999999999
Q ss_pred HHHHHHHHHHhhcccccccchhchHHHHH-HHhccCChhhHHHHHHHH
Q psy15604 720 VQNCLWTLRNLSDAGTKVDGLESLLQSLV-QLLASQDINVITCAAGVT 766 (986)
Q Consensus 720 ~~~al~~L~nLs~~~~~~~~~~~~l~~L~-~ll~~~~~~i~~~a~~~L 766 (986)
|.+++.+|..+. ...++..+. .++-.++++++..+..+-
T Consensus 392 R~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 392 RTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999998876 234444443 335567888888776665
No 97
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.28 E-value=0.11 Score=62.55 Aligned_cols=262 Identities=11% Similarity=0.070 Sum_probs=171.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccc--hhh
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG--LLA 572 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~--~~~ 572 (986)
+..+.+-+...+..-+..++..+..+........ .+. .+++..+...+....++ +.|+.++..++..... ...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEH-DVP-EHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS-SCC-HHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhcccccc-ccc-hhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 3344444555444445667777777755442211 111 15677777777543333 8888899999863221 112
Q ss_pred hhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCC-CHhHHHHHHHHHHHHhcCCc
Q psy15604 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQ 651 (986)
Q Consensus 573 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~-~~~v~~~a~~aL~~L~~~~~ 651 (986)
-+=.+.+|.++..+.+....|+..|-.++..+....++... ...+|.|+..+.+. .-..+..+..++..|+...+
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 22235788888888888889999888888888765544332 34578888888765 56778888999999987543
Q ss_pred ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy15604 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs 731 (986)
......=+..+|.+...+.+.. .++..++..++..++..-.|+..- ..++.|+..+.+++. .-.|+..|+
T Consensus 167 -~~~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~d~~---~~~~~~~~~~~~p~~-----~~~~~~~l~ 236 (986)
T 2iw3_A 167 -DQVALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNKDIE---RFIPSLIQCIADPTE-----VPETVHLLG 236 (986)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCTTTG---GGHHHHHHHHHCTTH-----HHHHHHHHT
T ss_pred -HHHHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCcchh---hhHHHHHHHhcChhh-----hHHHHHHhh
Confidence 2233333356777777777776 556678888888888776665433 467889999988854 224556666
Q ss_pred ccc---c-cccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHH
Q psy15604 732 DAG---T-KVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEA 775 (986)
Q Consensus 732 ~~~---~-~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~ 775 (986)
... + ..+..+=++|.|.+-|......+++.++-++.|++.-+++
T Consensus 237 ~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 237 ATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred cCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 321 1 2233345667777778888889999999999998876544
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.08 E-value=3.7 Score=51.29 Aligned_cols=138 Identities=5% Similarity=-0.087 Sum_probs=78.5
Q ss_pred CCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcC---Chh-HHHHHHHHHHHHhhcCCCCchhHHhcCcHH
Q psy15604 631 NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY---DYE-KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQ 706 (986)
Q Consensus 631 ~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~-~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~ 706 (986)
.+...+..++++++.++.........-.-...++.+..+.... ++. .++..++|+++..+..-......+. .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 4667788999999988754322111111112334444432211 122 2333577887766543111222332 4677
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcccccc----------cchhchHHHHHHHhccCChhhHHHHHHHHhhh
Q psy15604 707 ALAMHLGHPSQRLVQNCLWTLRNLSDAGTKV----------DGLESLLQSLVQLLASQDINVITCAAGVTVCQ 769 (986)
Q Consensus 707 ~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~----------~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni 769 (986)
.|+..+.++++.++..|++++.+++...... +....++..+..++...+.+-......+++.+
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7888888889999999999999999543321 22446666666666655554444444555544
No 99
>1dow_B Beta-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus}
Probab=95.82 E-value=0.0018 Score=39.19 Aligned_cols=30 Identities=90% Similarity=1.249 Sum_probs=27.0
Q ss_pred hHHHHhcCCCcHHHHHHHHHHhcCCchhhh
Q psy15604 461 PTAVQRLTEPSQMLKHAVVNLINYQDDADL 490 (986)
Q Consensus 461 ~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~ 490 (986)
++.++||++|++.++.++.+|++||+++++
T Consensus 2 ~t~vqrLaePsq~Lk~avv~LinyQDdadl 31 (32)
T 1dow_B 2 PTNVQRLAEPSQMLKHAVVNLINYQDDAEL 31 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCTTTT
T ss_pred ccchhhccCHHHHHHHHHHHHHhccccccc
Confidence 357899999999999999999999988764
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.51 E-value=4.7 Score=49.54 Aligned_cols=119 Identities=12% Similarity=0.013 Sum_probs=70.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC---CHhHHHHHHHHHHHHhcCCCCc----hHH
Q psy15604 170 HAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP---VESVLFYAITTLHNLLLHQEGS----KMA 242 (986)
Q Consensus 170 ~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~----~~~ 242 (986)
..+..+.|++.|..|-..|.++-..|+ +......+|..+ ++.++..|+.+|.+....-+.. ...
T Consensus 14 ~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~ 84 (980)
T 3ibv_A 14 AALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ 84 (980)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 345555688999999999988866543 455666677554 6889999999998776422222 222
Q ss_pred HHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhccC-hhhHHHHHhCCCHHHHHHHHhcCC
Q psy15604 243 VRLAGGLQKMVLLLG-RNNVKFLAIVTDCLQILAYGN-QESKLIILASQGPVELVRIMRSYD 302 (986)
Q Consensus 243 i~~~g~i~~L~~ll~-~~~~~~~~~a~~aL~~La~~~-~~~~~~~~~~g~v~~L~~ll~~~~ 302 (986)
..+...+..+.+.-. ...+.++...+.++..++... ++ .-.+.++.++.+++.++
T Consensus 85 ~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~~ 141 (980)
T 3ibv_A 85 MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAASS 141 (980)
T ss_dssp HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCCC
Confidence 222333333333110 134556777777777776421 11 12345677777776543
No 101
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.78 E-value=0.21 Score=51.72 Aligned_cols=187 Identities=12% Similarity=0.061 Sum_probs=107.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCc---hHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchH
Q psy15604 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQ---MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL 199 (986)
Q Consensus 123 i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~---~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~ 199 (986)
+..+.++++-+. +.+--+.-+++-+..++.....+.+.+. ++..+...+.+...+.-+..++++++|+-.++.++.
T Consensus 105 l~~l~kil~WP~-~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCPE-DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSCT-TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCCH-HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 455666654332 3344445555555555555444443322 122233334433457779999999999999988887
Q ss_pred HHHhc--CChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhc
Q psy15604 200 AIFKS--GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 200 ~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~aL~~La~ 276 (986)
.+... .+++.+...+.+++..++..++..+.|++...-..+..=........+..++.. .+++....+..+|++|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 76653 345556666667788999999999999995321000000001123344444543 456777778888999988
Q ss_pred cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHH
Q psy15604 277 GNQESKLIILASQGPVELVRIMRSYDYEKLLWCT 310 (986)
Q Consensus 277 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a 310 (986)
.+++.+.....-|.-..+-+....+.+.++.+.+
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence 7665555444444444444444443445455544
No 102
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.38 E-value=1.3 Score=43.38 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHhhccC-ccchHHHHh-cCChHHHHHh-------hCCCC-----HhHHHHHHHHHHHHhcCCCCchHH
Q psy15604 177 DLETTKGAVGTLHNLSHH-RQGLLAIFK-SGGIPALVKL-------LSSPV-----ESVLFYAITTLHNLLLHQEGSKMA 242 (986)
Q Consensus 177 ~~~~~~~a~~~L~~ls~~-~~~~~~i~~-~g~i~~Lv~l-------L~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~ 242 (986)
+++.|+.|+.-|+.=-.. ++-...+.. -|.+..|++= ++.+. ..-..+|+..|.-++ .+++.|..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence 445677776666553222 343333443 4777766432 23221 123467777778888 57789999
Q ss_pred HHHcCcHHHHHHHhccCC-----HHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy15604 243 VRLAGGLQKMVLLLGRNN-----VKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKV 316 (986)
Q Consensus 243 i~~~g~i~~L~~ll~~~~-----~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~ 316 (986)
+.++...--|..+|...+ +.++-.+...++.|.. ++++.-..+.+.+.+|.+++.+..++.- .+..|...+..
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel-SKtvAtfIlqK 171 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL-SKTVATFILQK 171 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH-HHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH-HHHHHHHHHHH
Confidence 998988777777776532 4456667777788775 7788888899999999999999998864 44455555544
Q ss_pred hhhCCCChHHHHHhccHHHHHHHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHH
Q psy15604 317 LSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETI 396 (986)
Q Consensus 317 Ls~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 396 (986)
+-. +..|+..+.+ ..+--.+....|.++.. .+....++.+-....++-..|+.++..+..+
T Consensus 172 IL~---------dd~GL~YiC~-----t~eRF~av~~vL~~mV~-----~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 172 ILL---------DDTGLAYICQ-----TYERFSHVAMILGKMVL-----QLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHH---------SHHHHHHHTS-----SHHHHHHHHHHHHHHHH-----HTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred Hhc---------cchhHHHHHc-----cHHHHHHHHHHHHHHHH-----HHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 332 2222222211 11111122222333221 1223567778888888999998888777766
Q ss_pred H
Q psy15604 397 E 397 (986)
Q Consensus 397 ~ 397 (986)
.
T Consensus 233 ~ 233 (268)
T 2fv2_A 233 R 233 (268)
T ss_dssp H
T ss_pred H
Confidence 4
No 103
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.36 E-value=0.35 Score=52.93 Aligned_cols=159 Identities=16% Similarity=0.076 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc
Q psy15604 179 ETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG 257 (986)
Q Consensus 179 ~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 257 (986)
.+|+.|+++|+.+ .+ ++. ..++..|+..+..+..+++..++-.|..+. +- ... -.+.++.++.-|+
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-DL--L~~---Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-EF--VED---KDGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-GG--CCC---HHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-HH--HHH---HHHHHHHHHhhcC
Confidence 5788888888887 55 433 234555555556677778887777777772 11 111 1355677777777
Q ss_pred cCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCCh-HHHHHHHHHHHHHhhhCCCChHHHHHhccHHHH
Q psy15604 258 RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDY-EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQAL 336 (986)
Q Consensus 258 ~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L 336 (986)
+.+++++..|+.+|.-++. ++.... .+..+..+|...++ ..........|..|...+.+. -.....+|.|
T Consensus 310 D~DDDVRAVAAetLiPIA~--p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL 380 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFPI--TDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDI 380 (800)
T ss_dssp CSSHHHHHHHHHHHTTSCC--SSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGT
T ss_pred CcccHHHHHHHHHhhhhcc--hhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHH
Confidence 7788888888888877761 211111 13444455554322 112223344555554433221 1112778889
Q ss_pred HHHhCCCCHHHHHHHHHHHhccc
Q psy15604 337 AMHLGHPSQRLVQNCLWTLRNLS 359 (986)
Q Consensus 337 ~~ll~~~~~~~~~~~~~~L~~ls 359 (986)
-.++.++-..++.+.+.+|..+.
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HhhhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.58 E-value=18 Score=44.41 Aligned_cols=179 Identities=14% Similarity=0.175 Sum_probs=102.9
Q ss_pred CCChhhHHHHHhHHHHHHHh--cCCCcchhHHHhCCCHHHHHHHHccC-----CHHHHHHHHHHHHHhcccCcchhHhhh
Q psy15604 88 DEDQDDADLATRAIPELIKL--LNDEDQDDADLATRAIPELIKLLNDE-----DQVVVSQAAMMVHQLSKKEASRHAIMN 160 (986)
Q Consensus 88 ~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~la~~~~~~~~i~~ 160 (986)
+.+.+.+..|+..|.+.... -.-+...+..+....+..+......+ .+.++...+.++..++...-. ..+
T Consensus 60 s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~W-- 136 (1023)
T 4hat_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNW-- 136 (1023)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTC--
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhc--
Confidence 44567777777777665541 01111122223333344343332221 355677788888888865311 111
Q ss_pred CCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---------ccch-----HHHHhc--CChHHHHHhhC-CCCHhHHH
Q psy15604 161 SPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH---------RQGL-----LAIFKS--GGIPALVKLLS-SPVESVLF 223 (986)
Q Consensus 161 ~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~---------~~~~-----~~i~~~--g~i~~Lv~lL~-~~~~~~~~ 223 (986)
+.+++.++..++. ++......+.+|..|+.. ...+ ..+.+. .+++.+..+|. ..++++..
T Consensus 137 -p~~l~dL~~~l~~--~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~ 213 (1023)
T 4hat_C 137 -PEFIPELIGSSSS--SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIV 213 (1023)
T ss_dssp -TTHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred -hHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3467888887765 455667777777665433 0111 112221 22333444443 34677888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHcCcHHHHH-HHhccCCHHHHHHHHHHHHHHhc
Q psy15604 224 YAITTLHNLLLHQEGSKMAVRLAGGLQKMV-LLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 224 ~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~-~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
.++.++......-+ -..+.+...++.++ .++. ++..+..|+.+|..+..
T Consensus 214 ~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 214 ATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 89999988774322 24466678888888 7774 56789999999999876
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.45 E-value=1.6 Score=44.78 Aligned_cols=182 Identities=16% Similarity=0.100 Sum_probs=112.4
Q ss_pred hHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCC--hHH-HHHh-CcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCc--c
Q psy15604 579 IPALVKLLSSPVESVLFYAITTLHNLLLHQEGS--KMA-VRLA-GGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ--E 652 (986)
Q Consensus 579 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~--~~~-v~~~-g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~--~ 652 (986)
+| +-.-|.+.+=..|..|+..|..+....+.. .+. +... ...+.+-..+.+.|..++..++.++..++.... .
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 556778888899999999999888654321 111 1112 234456667788899999999999998876321 1
Q ss_pred c-HH--HHHhCCChHHHHH-HHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q psy15604 653 S-KL--IILASQGPVELVR-IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728 (986)
Q Consensus 653 ~-~~--~~~~~~~~~~L~~-ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~ 728 (986)
. +. ...-...++.|+. .+.+.. ..++..+..++..+......... .++.+...+.+.+|.++..++.+|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1 11 1111123344443 243444 44555555555554432221122 2456777889999999999999998
Q ss_pred Hhhc-ccccccch----hchHHHHHHHhccCChhhHHHHHHHHh
Q psy15604 729 NLSD-AGTKVDGL----ESLLQSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 729 nLs~-~~~~~~~~----~~~l~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
++.. .+...... ..+++.+..++.+.|+++|..|..++.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8873 33332222 245667778889999999999999886
No 106
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.44 E-value=0.4 Score=49.60 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccc---CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhc--cCChHHH
Q psy15604 508 VVVSQAAMMVHQLSKKEASRHAIMNSP---QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK--SGGIPAL 582 (986)
Q Consensus 508 ~~~~~a~~~L~~l~~~~~~~~~l~~~~---~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~--~~~i~~L 582 (986)
+.+.-++..++-...++.....+.... .++..+...+.....+..+..++++++|+-.++.++..+.. ...++.+
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 334445555555544443332222221 22333444444444677799999999999988877776664 2344555
Q ss_pred HHhcCCCCHhHHHHHHHHHHHhhcCCCC--ChHHHHHhCcHHHHHHhhcC-CCHhHHHHHHHHHHHHhcCC
Q psy15604 583 VKLLSSPVESVLFYAITTLHNLLLHQEG--SKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGN 650 (986)
Q Consensus 583 v~lL~~~~~~v~~~a~~aL~nl~~~~~~--~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~a~~aL~~L~~~~ 650 (986)
...+.+++..++..++..+.|++...-. ..+.. ...+..+..++.. .+++....+.-+|.+|.+..
T Consensus 197 ~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 197 IELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 6666677889999999999999964211 11111 1133444455544 47888888899999999864
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.17 E-value=1.9 Score=44.21 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=115.7
Q ss_pred HHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhH-HHh-CCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCc----ch
Q psy15604 82 LIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDA-DLA-TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA----SR 155 (986)
Q Consensus 82 l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-i~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~----~~ 155 (986)
|-+-+.+..+..|..|...|..+..-......... +.. ....+.+.+.+.+.+..+...++.++..++..-. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55778899999999888877665542111111111 111 2234556678888899999999999988775321 11
Q ss_pred hHhhh-CCchHHHHHHH-HhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHh
Q psy15604 156 HAIMN-SPQMVAALVHA-ISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 233 (986)
Q Consensus 156 ~~i~~-~~~~i~~Lv~l-L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 233 (986)
..... .+.+++.|+.= |.+ ....++..|..++..+......... .++.+...+.+.++.++..++..|..+.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11111 11235555542 444 5677888888888777544322222 2456777888899999999998888876
Q ss_pred cCCC--Cc-hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhc
Q psy15604 234 LHQE--GS-KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276 (986)
Q Consensus 234 ~~~~--~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~ 276 (986)
.... .. ..... ...++.+..++.+.++.++..+..++..+..
T Consensus 168 ~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4311 11 11111 2345567778888999999999999888854
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.78 E-value=3.1 Score=41.81 Aligned_cols=177 Identities=9% Similarity=-0.030 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhc---CCCCHHHHHHHHHHHHHhhC---Ccc
Q psy15604 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS---NSNDLETTKGAVGTLHNLSH---HRQ 568 (986)
Q Consensus 495 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~---~~~~~~~~~~a~~~L~~ls~---~~~ 568 (986)
-+.+...|.+.|..-+..|+..|........ ..++. .++.++..+. .+.++.+...++.+|..+.. ..+
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~ 122 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE 122 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777888899888888888887644322 22222 2444444332 23477788888877777632 111
Q ss_pred chhhhhc-cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 569 GLLAIFK-SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 569 ~~~~i~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
.+..-.+ .-.+|.|+.-+.++.+.++..+-..+..++.-.+ -....+.++.-+++.|.+.+..++..+..+.
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 1111111 3367999999999999999988888877764322 2345667788889999999999999888886
Q ss_pred cCCcccHHHHHhCCCh---HHHHHHHhcCChhHHHHHHHHHHHHh
Q psy15604 648 YGNQESKLIILASQGP---VELVRIMRSYDYEKLLWCTSRVLKVL 689 (986)
Q Consensus 648 ~~~~~~~~~~~~~~~~---~~L~~ll~~~~~~~~~~~~~~~L~~L 689 (986)
..+... ...++ +.+..++.+.| ..++.+|..++..+
T Consensus 196 ~~~G~~-----~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~ 234 (266)
T 2of3_A 196 TNAGIS-----PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVAC 234 (266)
T ss_dssp HHHCSG-----GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHH
T ss_pred HhcCCC-----ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 532111 12467 88888898877 67888877666544
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.05 E-value=0.27 Score=49.17 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=109.4
Q ss_pred HHhCCCCHHHHHHHHHHHhcccccccccccccCCchHHHHHHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHH
Q psy15604 338 MHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVE 417 (986)
Q Consensus 338 ~ll~~~~~~~~~~~~~~L~~ls~~~~~i~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~ 417 (986)
.++.++++.++..++..|. ......++..+++.++..++..| ..+.|..++.+++..++
T Consensus 57 ~ll~d~~~~VR~~AA~~l~----~~~l~~L~~D~~~~VR~~aA~~L-----------------~~~~L~~ll~D~d~~VR 115 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP----VEALTPLIRDSDEVVRRAVAYRL-----------------PREQLSALMFDEDREVR 115 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC----GGGGGGGTTCSSHHHHHHHHTTS-----------------CSGGGGGTTTCSCHHHH
T ss_pred HHhcCCCHHHHHHHHHhCC----HHHHHHHccCcCHHHHHHHHHHC-----------------CHHHHHHHHcCCCHHHH
Confidence 4557888888877776431 22345666777888888777642 12456677777777777
Q ss_pred HHHHHHHHHHhhccccccccccccccchhhccCCCCCCCCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHH
Q psy15604 418 ILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPE 497 (986)
Q Consensus 418 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~ 497 (986)
..++..+ .+ ..+...+.+++..++..+..-+ ..+.
T Consensus 116 ~~aA~~l----------------~~------------------~~L~~L~~D~d~~VR~~aA~~l-----------~~~~ 150 (244)
T 1lrv_A 116 ITVADRL----------------PL------------------EQLEQMAADRDYLVRAYVVQRI-----------PPGR 150 (244)
T ss_dssp HHHHHHS----------------CT------------------GGGGGGTTCSSHHHHHHHHHHS-----------CGGG
T ss_pred HHHHHhC----------------CH------------------HHHHHHHcCCCHHHHHHHHHhc-----------CHHH
Confidence 6544211 00 0112233455566665544311 1223
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhccC
Q psy15604 498 LIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSG 577 (986)
Q Consensus 498 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 577 (986)
+..+++++++.++..++..+ . .+.+.. +-.+.+++++..++..+
T Consensus 151 l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~-ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRL---P---------------EESLGL-MTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS---C---------------GGGGGG-STTCSSHHHHHHHHHHC-----------------
T ss_pred HHHHHcCCCHHHHHHHHHcC---C---------------HHHHHH-HHcCCCHHHHHHHHHhC-----------------
Confidence 44567788888888776641 0 011222 33345788888877542
Q ss_pred ChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHH
Q psy15604 578 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDC 642 (986)
Q Consensus 578 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~a 642 (986)
..+.|..++.+++..|+..++..+. .+.|..+ ++++..|+..+...
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHH
Confidence 3467788888888889888887642 3455555 77788888776543
No 110
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.70 E-value=3.4 Score=41.50 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=107.8
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHh----hcCCCHhHHHHHHHHHHHHhc----CCc
Q psy15604 580 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL----LGRNNVKFLAIVTDCLQILAY----GNQ 651 (986)
Q Consensus 580 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~l----l~~~~~~v~~~a~~aL~~L~~----~~~ 651 (986)
+.+...|-+.+..-+..++..|.......+ +.+. ..+..+++. +.++|+.+...+...|..+.. ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555556666667777777766553322 2221 122223332 346788888888888777643 111
Q ss_pred ccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCCchhHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy15604 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVC-SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730 (986)
Q Consensus 652 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~-~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~al~~L~nL 730 (986)
.....-. .-.+|.|+.-+-+.. +.++..+-.++..+... +. ....+.+++.+.|.+.+.+..++..+..+
T Consensus 124 ~~~~~ea-~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1111111 124677777665555 66777777676666431 11 12556677888999999999999999988
Q ss_pred hc-ccccccchhchH---HHHHHHhccCChhhHHHHHHHHh
Q psy15604 731 SD-AGTKVDGLESLL---QSLVQLLASQDINVITCAAGVTV 767 (986)
Q Consensus 731 s~-~~~~~~~~~~~l---~~L~~ll~~~~~~i~~~a~~~L~ 767 (986)
-. .+.. ....+ +.+..++.+.|..+|..|..++.
T Consensus 195 i~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 195 ITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred HHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 73 2222 23567 99999999999999999999986
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.21 E-value=2.8 Score=40.88 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=94.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--Cccchhhhhc
Q psy15604 498 LIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH--HRQGLLAIFK 575 (986)
Q Consensus 498 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~--~~~~~~~i~~ 575 (986)
...+.+++..++|..|+..|..+ ... ...++.+...+..+++-.+++.++.++..++. .++
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------- 138 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------- 138 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------
Confidence 33456677789999999988887 311 24566666656556678999999999998874 333
Q ss_pred cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccH
Q psy15604 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 654 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 654 (986)
..++.+....++++..+++.|+..+.-.+.. +..+.. ..-+++.+-.+..+++.-|+....|.|+.++..+|+--
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 2567888899999999999999887654432 111110 01134455555666788999999999999999876533
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=89.95 E-value=10 Score=37.29 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhChhhHHHHHhcCCcHHHHHHhccCchhHH--HHHHHHHHHHhhccccccccccccccchhhccCCCCCC
Q psy15604 378 VAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVE--ILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQ 455 (986)
Q Consensus 378 ~a~~~L~~l~~~~~~~~~l~~~g~l~~Lv~ll~~~~~~~~--~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (986)
+|...|--++.+++.|..+.++...-.|-.++...+..-. ..-...++++ .++...
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVI----------gaLvK~------------ 132 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVI----------GALVKT------------ 132 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHH----------HHHGGG------------
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHH----------HHHhcc------------
Confidence 4444555678999999999999988788888765432211 1111111111 111000
Q ss_pred CCCchhHHHHhcCCCcHHHHHHHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhccc-
Q psy15604 456 FDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP- 534 (986)
Q Consensus 456 ~~~~~~~~v~~l~~~~~~~~~a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~- 534 (986)
++++ .+.-|. ..+.+|..++.+..+++-.+.-|+.++.++..++....-+....
T Consensus 133 --------------dd~e---Vi~fLL--------~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~e 187 (268)
T 2fv2_A 133 --------------DEQE---VINFLL--------TTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYE 187 (268)
T ss_dssp --------------CCHH---HHHHHH--------HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHH
T ss_pred --------------CcHH---HHHHHH--------hhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHH
Confidence 0011 111111 25568999999999999999999999999988877554444432
Q ss_pred ------CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCccchhhhhc-------cCChHHHHHhcCCCCHhHHHHHHHHH
Q psy15604 535 ------QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK-------SGGIPALVKLLSSPVESVLFYAITTL 601 (986)
Q Consensus 535 ------~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-------~~~i~~Lv~lL~~~~~~v~~~a~~aL 601 (986)
.++..++.-+....++.+.+...++...|+.++..+..+.+ .|... .+++ +|+.++.+-...+
T Consensus 188 RF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~---~~l~-~D~~~k~~l~qLl 263 (268)
T 2fv2_A 188 RFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFA---QVLK-DDTTTKRWLAQLV 263 (268)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTH---HHHT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHH---HHHh-cCHHHHHHHHHHH
Confidence 23444555555566889999999999999998877766553 22222 2222 4666666655555
Q ss_pred HHh
Q psy15604 602 HNL 604 (986)
Q Consensus 602 ~nl 604 (986)
.|+
T Consensus 264 ~n~ 266 (268)
T 2fv2_A 264 KNL 266 (268)
T ss_dssp HHS
T ss_pred Hhc
Confidence 554
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.72 E-value=0.18 Score=50.52 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHH
Q psy15604 546 NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMV 625 (986)
Q Consensus 546 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv 625 (986)
.++++.++..++..| ..+.+..++++++..|+..++..+ . .+.+.
T Consensus 84 ~D~~~~VR~~aA~~L-----------------~~~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~ 128 (244)
T 1lrv_A 84 RDSDEVVRRAVAYRL-----------------PREQLSALMFDEDREVRITVADRL---P---------------LEQLE 128 (244)
T ss_dssp TCSSHHHHHHHHTTS-----------------CSGGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGG
T ss_pred cCcCHHHHHHHHHHC-----------------CHHHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHH
Confidence 334677777776421 125677788888888888877642 1 12345
Q ss_pred HhhcCCCHhHHHHHHH
Q psy15604 626 LLLGRNNVKFLAIVTD 641 (986)
Q Consensus 626 ~ll~~~~~~v~~~a~~ 641 (986)
.+++++++.|+..++.
T Consensus 129 ~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGTTCSSHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 5567778888877765
No 114
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.87 E-value=23 Score=36.44 Aligned_cols=203 Identities=13% Similarity=0.078 Sum_probs=143.5
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-----chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-----RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH 566 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~ 566 (986)
.+.+..|+..+..-+-+.+..++.++.++.+.... ..-+...+.++..|+..- +++++-..+-..|..+..+
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---e~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY---ESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG---GSTTTHHHHHHHHHHHHTS
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh---ccchhHhHHHHHHHHHHHh
Confidence 56688888888888999999999999999776532 233333445555555543 3566667777777777778
Q ss_pred ccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhC---cHHHHHHhhcCCCHhHHHHHHHHH
Q psy15604 567 RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG---GLQKMVLLLGRNNVKFLAIVTDCL 643 (986)
Q Consensus 567 ~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g---~v~~Lv~ll~~~~~~v~~~a~~aL 643 (986)
+.....+...+.+..+....+.++=++...|..++..+..............+ .....-.++.++|--+++.+...|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 77788888888899999999999999999999999888765443222222222 345566789999999999999999
Q ss_pred HHHhcCCcccHHHH----HhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCCchhH
Q psy15604 644 QILAYGNQESKLII----LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 699 (986)
Q Consensus 644 ~~L~~~~~~~~~~~----~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l 699 (986)
+.|..+. .+...+ -+..-+..++.+|++.+ ..++..|..++.....+|...+.+
T Consensus 234 gelLldr-~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K~~~I 291 (341)
T 1upk_A 234 GELLLDR-HNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPI 291 (341)
T ss_dssp HHHHHSG-GGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHhCc-hHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCCChHH
Confidence 9988762 333222 23334667777888777 667777777777776665544443
No 115
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.57 E-value=23 Score=36.49 Aligned_cols=207 Identities=13% Similarity=0.073 Sum_probs=146.1
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccC-cch----hHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15604 116 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE-ASR----HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHN 190 (986)
Q Consensus 116 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~-~~~----~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ 190 (986)
.+...+.+..|+..|..=+-+.|..++.++.++-... ..+ +-+.....++. -++..-+++++-..+-..|..
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~---~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF---MLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHH---HHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHH---HHHHhhccchhHhHHHHHHHH
Confidence 4456678889999999999999999999998877543 221 22233322223 333333456677777778888
Q ss_pred hccCccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcC---cHHHHHHHhccCCHHHHHHH
Q psy15604 191 LSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG---GLQKMVLLLGRNNVKFLAIV 267 (986)
Q Consensus 191 ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g---~i~~L~~ll~~~~~~~~~~a 267 (986)
...++.....+...+.+-.+....+.++=++-..|..++..+...+........... .+...-++|.+++--.+..+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 888888888888888888999999999999999999999888855544433333333 46667788899998899999
Q ss_pred HHHHHHHhccChhhHHHHH----hCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCChHHH
Q psy15604 268 TDCLQILAYGNQESKLIIL----ASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 327 (986)
Q Consensus 268 ~~aL~~La~~~~~~~~~~~----~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 327 (986)
...|+.|-.+ +.+...+. +..-+..++.+|++.+.. ++..|..++.....++...+.+
T Consensus 230 lKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~-Iq~EAFhVFKvFVANP~K~~~I 291 (341)
T 1upk_A 230 LKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRN-IQFEAFHVFKVFVANPNKTQPI 291 (341)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhc-hhhhhhhheeeeeeCCCCChHH
Confidence 9999998763 33333322 234456778888887765 7888888888777666654443
No 116
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=85.88 E-value=10 Score=38.64 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=93.8
Q ss_pred hcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHH
Q psy15604 107 LLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVG 186 (986)
Q Consensus 107 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~ 186 (986)
++.+++..+-++...++..+......++.++.+..++.|...+...+....=.+. .+|-++..+.-.++.++......
T Consensus 270 LmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L~e--~LPFi~~~i~~h~eDdvvYSGTG 347 (619)
T 3c2g_A 270 LLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLEN--ILPFLLRLIEIHPDDEVIYSGTG 347 (619)
T ss_dssp HCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCCTT--HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccccc--cchHHHHHhccCCCcceEEecch
Confidence 3444555677899999999999999999999999999999998776554333332 46888888887678899999999
Q ss_pred HHHhhccC-ccchHHHHhcCChHHHHHhhCCC-------CHhHHHHHHHHHHHHh
Q psy15604 187 TLHNLSHH-RQGLLAIFKSGGIPALVKLLSSP-------VESVLFYAITTLHNLL 233 (986)
Q Consensus 187 ~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~ 233 (986)
.|.|...+ ..-++.-+..|+|+.|-...... +..-+..|+..++|..
T Consensus 348 FLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 348 FLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 99999888 45666677789999988776432 2234455666655544
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.17 E-value=9.1 Score=41.43 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHHHHhcc-cCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHH
Q psy15604 132 DEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPAL 210 (986)
Q Consensus 132 ~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L 210 (986)
.++...+..|+..+.+... .|+.++. .+..++++..+ +|..+|..|...|..+|.+ ++...+ +..|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~------Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL 105 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS------AINAQLDLCED-EDVSIRRQAIKELPQFATG-ENLPRV-----ADIL 105 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH------HHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHH
Confidence 4578899999999988775 4555442 35888888877 7999999999999999998 555554 4589
Q ss_pred HHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Q psy15604 211 VKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCL 271 (986)
Q Consensus 211 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL 271 (986)
+++|++.++.-...+-.+|..+...++ .+.+..+...+...++.++..+...|
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 999998887777777777777764443 34455555555555565665444443
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=84.41 E-value=50 Score=35.82 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhhccC-ccchHHHHhcCChHHHHHhhCCCCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHH
Q psy15604 176 NDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL 254 (986)
Q Consensus 176 ~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ 254 (986)
.+...++.|++.+.+...+ |+.++. ++..++.++.+.+..++..|++.|-.+|.+ + .. ...+..|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i-----~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NL-----PRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hh-----hhHHHHHHH
Confidence 4789999999999999887 776664 456899999999999999999999999965 2 32 244678999
Q ss_pred HhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHH
Q psy15604 255 LLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVL 314 (986)
Q Consensus 255 ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL 314 (986)
+|.++++.....+-.+|..|-..++.. .+..+...+.+++ +.+++.++..|
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~-e~~Rer~lkFi 158 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGE-DIVRERAIKFL 158 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSC-HHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccc-hHHHHHHHHHH
Confidence 999998888888888888887645421 2344444444444 45777665554
No 119
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=83.32 E-value=18 Score=35.67 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc--cc-hhhhh--------
Q psy15604 506 DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR--QG-LLAIF-------- 574 (986)
Q Consensus 506 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~--~~-~~~i~-------- 574 (986)
+...+..++.+|..+.........++..++.+..+...|.+ +++.++..++..|..+|..+ ++ ...+.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 46778889999999988887888888888899988888854 47899999999999998843 35 43332
Q ss_pred --ccCChHHHHHhcCC-CCHhHHHHHHHHHHHhhcCCCCC------hHHHHHhCcHHHHHHhhcC-CCHhHHHH
Q psy15604 575 --KSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGS------KMAVRLAGGLQKMVLLLGR-NNVKFLAI 638 (986)
Q Consensus 575 --~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~------~~~v~~~g~v~~Lv~ll~~-~~~~v~~~ 638 (986)
+..-...++..++. .+.+.+..++..+..+....++. |..+...|.. .+++.++. +++.+...
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~-~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH-HHHHHHHHCCCHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH-HHHHHHhccCCHHHHHH
Confidence 23345567777764 44566666665555555444432 3344445544 44444443 45554443
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=82.98 E-value=13 Score=36.11 Aligned_cols=144 Identities=7% Similarity=-0.038 Sum_probs=95.5
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhcCChhHHHHHHHHHHHHhhc--CCCCchhH
Q psy15604 622 QKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV--CSSNKPAI 699 (986)
Q Consensus 622 ~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~L~~Ls~--~~~~~~~l 699 (986)
+....+.+++...++-.|+..|..+ .. . . ..++.+...+...+.=.+++.++.++..++. +++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~--~-~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK--D-K------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT--S-H------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC--c-H------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 3344556677788888888877766 21 1 0 1222333322222223566666667776653 332
Q ss_pred HhcCcHHHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhccCChhhHHHHHHHHhhhccCcHHHHHH
Q psy15604 700 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQT 779 (986)
Q Consensus 700 ~~~g~~~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~~~~~i~~~a~~~L~ni~~g~~~~v~~ 779 (986)
..++.+.....++++.+++.|...++--+..+.....-+-+++.|..+..+++..||+..+|.|..++.-.|+-|..
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 25677888899999999999988876533222112223467788888888899999999999999999999999888
Q ss_pred HHhc
Q psy15604 780 IVNA 783 (986)
Q Consensus 780 l~~~ 783 (986)
.++.
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8774
No 121
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.87 E-value=19 Score=38.52 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc--cc-hhhhh-------
Q psy15604 505 EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR--QG-LLAIF------- 574 (986)
Q Consensus 505 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~--~~-~~~i~------- 574 (986)
.+...+..++.+|..+.........++..+..+..+...+.+ ..+.++..+...|..+|..+ ++ ...+.
T Consensus 132 ~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 132 YDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp -CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHH
Confidence 356888999999999988887888888888999999998865 47899999999999998843 33 33332
Q ss_pred ---ccCChHHHHHhcCC-CCHhHHHHHHHHHHHhhcCCCCC------hHHHHHhCcHHHHHHhhcC-CCHhHHH
Q psy15604 575 ---KSGGIPALVKLLSS-PVESVLFYAITTLHNLLLHQEGS------KMAVRLAGGLQKMVLLLGR-NNVKFLA 637 (986)
Q Consensus 575 ---~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~------~~~v~~~g~v~~Lv~ll~~-~~~~v~~ 637 (986)
+..-...++..|++ .+.+.+..++..+..+....++. |..+...|..+ ++.-++. +++.+..
T Consensus 211 ~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~-il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 211 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDMKV 283 (383)
T ss_dssp HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH-HHHHHTTSCCHHHHH
T ss_pred HhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHH-HHHHHhcCCChhHHH
Confidence 23446678888876 45667666666666666544432 33444455544 4444554 4554443
No 122
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=81.93 E-value=15 Score=36.28 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=85.0
Q ss_pred hcCChHHHHHhhCC-----------CCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Q psy15604 203 KSGGIPALVKLLSS-----------PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCL 271 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~aL 271 (986)
..+|+..|+..|.. .+.+.+..++.+|..+..........+...+++..|...|.++++.++..+...|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35677777776631 1345678899999999833333334444456899999999989999999988888
Q ss_pred HHHhccCh-hh-HHHH----------HhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhhCCCCh-------HHHHHhcc
Q psy15604 272 QILAYGNQ-ES-KLII----------LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK-------PAIVEAGG 332 (986)
Q Consensus 272 ~~La~~~~-~~-~~~~----------~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~~~~~~-------~~i~~~g~ 332 (986)
..++.-.. +. ...+ .+..-...++..++..+..+.+.++...+..+-.++++. ..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 87765221 12 1111 122334556766665444446677777777777666552 33555566
Q ss_pred HHHHHHH
Q psy15604 333 MQALAMH 339 (986)
Q Consensus 333 l~~L~~l 339 (986)
.+.+-.+
T Consensus 201 ~~il~~l 207 (233)
T 2f31_A 201 HQVLQEL 207 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.62 E-value=35 Score=42.21 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=81.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcccccccchhchHHHHHHHhcc-----C--ChhhHHHHHHHHhhhccCcHHHHH
Q psy15604 706 QALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLAS-----Q--DINVITCAAGVTVCQVGGVEALVQ 778 (986)
Q Consensus 706 ~~L~~ll~~~~~~v~~~al~~L~nLs~~~~~~~~~~~~l~~L~~ll~~-----~--~~~i~~~a~~~L~ni~~g~~~~v~ 778 (986)
..|.+.+...+..-..-++.+|+|+-. ...++.|..++.. . ...++..|.|+|.+++.-.++.++
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~ 514 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ 514 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH
Confidence 344455566677777888999999853 2456777777642 1 345788899988744322222221
Q ss_pred HHHhcCCcccccccccccCCchhhHHHHHhcCCCCCcccCCCCcccccccccchhhhhhhhcccCCCCcccchhhhccCc
Q psy15604 779 TIVNAGDREEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGG 858 (986)
Q Consensus 779 ~l~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 858 (986)
T Consensus 515 -------------------------------------------------------------------------------- 514 (1056)
T 1lsh_A 515 -------------------------------------------------------------------------------- 514 (1056)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCchhhHHHHHHHHHHhhcCCchHHHHHHHHHhhhChHHHHHhhCCCCCchHHHHHHHHHHhhhhc
Q psy15604 859 VEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALC 935 (986)
Q Consensus 859 ~~~L~~~~l~~~~~~~v~e~a~~~l~~l~~~~~~~~~~~~~v~~~~~l~~l~~ll~~~~~~~~~~~~~~~l~nl~~~ 935 (986)
+.+++.......+++++-+|+-+|- ..+|.... +..|...+..+.+.+|...+.+.|+|++..
T Consensus 515 -~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~~~~----------l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 515 -EIVLPIFLNVAIKSELRIRSCIVFF---ESKPSVAL----------VSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HHHHHHHHCTTSCHHHHHHHHHHHH---HTCCCHHH----------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHhcCCCCChHHHHHHHHHHH---HHCcCHHH----------HHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 3344445556677888888877774 33333322 235556666655778999999999999765
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=80.39 E-value=23 Score=37.81 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=112.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhc-CCCcc-hhHHHhCCCHHHHHHHHcc-----------CCHHHHHHHHHH
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLL-NDEDQ-DDADLATRAIPELIKLLND-----------EDQVVVSQAAMM 144 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~-~~~i~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~ 144 (986)
.-...++.|.++....+. ...|..|...+ +.+.. .+.+. .+|+..|+..|.. .+...+..++++
T Consensus 67 sP~~yi~~L~~~~~~~kl--~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~C 143 (383)
T 3eg5_B 67 SAMMYIQELRSGLRDMHL--LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRC 143 (383)
T ss_dssp CHHHHHHHHTTTCCHHHH--HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccchhH--HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 455566666655322211 12233333211 22223 34555 6778888887752 245788889999
Q ss_pred HHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcc--c-hHHHHh----------cCChHHHH
Q psy15604 145 VHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ--G-LLAIFK----------SGGIPALV 211 (986)
Q Consensus 145 L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~--~-~~~i~~----------~g~i~~Lv 211 (986)
|..+..+..-...+...+..+..|...|.+ ..+.++..++..|..+|..++ + ...+.+ ..-...++
T Consensus 144 LkalmN~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv 222 (383)
T 3eg5_B 144 LKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 222 (383)
T ss_dssp HHHHTSSHHHHHHHHTCSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHhcchhhHHHHHcChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 999888776677777777778888888776 688999999999998887743 3 444333 34567788
Q ss_pred HhhCC-CCHhHHHHHHHHHHHHhcCCCCch------HHHHHcCcHHHHHHHhcc-CCHHHH
Q psy15604 212 KLLSS-PVESVLFYAITTLHNLLLHQEGSK------MAVRLAGGLQKMVLLLGR-NNVKFL 264 (986)
Q Consensus 212 ~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~------~~i~~~g~i~~L~~ll~~-~~~~~~ 264 (986)
..|.. .+.+.+..+...+..+....++.. ..+... |+..++.-++. +++.+.
T Consensus 223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~-Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GLHQVLQELREIENEDMK 282 (383)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT-THHHHHHHHTTSCCHHHH
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-ChHHHHHHHhcCCChhHH
Confidence 88876 466777777777777775444332 223334 45555555654 344433
No 125
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=80.31 E-value=12 Score=38.24 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred HHHHHHHhhCCccchhhhhccCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhc-CCCHh
Q psy15604 556 AVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG-RNNVK 634 (986)
Q Consensus 556 a~~~L~~ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~-~~~~~ 634 (986)
+...|.-+-.+++...-+++.+|+..+....+.++.++.+..+..|...+....-+...+ ...+|-++..+. +++++
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcc
Confidence 333343344455667788999999999999999999999999998887762221111111 245666777665 57889
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhCCChHHHHHHHhc
Q psy15604 635 FLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRS 672 (986)
Q Consensus 635 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~L~~ll~~ 672 (986)
+.-...+.|+|.+....+.+..-+..+++..|...+..
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 99999999999999877777777888888888886644
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.84 E-value=46 Score=41.15 Aligned_cols=203 Identities=13% Similarity=0.076 Sum_probs=112.5
Q ss_pred cHHHHHHHhcCCChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHcc----CCHHHHHHHHHHHHHhcc---
Q psy15604 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND----EDQVVVSQAAMMVHQLSK--- 150 (986)
Q Consensus 78 ~i~~l~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~la~--- 150 (986)
++..+.+++.+++....+ |+.+|....... .+ . ...+..+..++++ .++.++..+..+++.|..
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~-~P--t-----~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c 427 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQ-QA--T-----RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC 427 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC-CC--C-----HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccC-CC--C-----HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHh
Confidence 555666666666554433 444444333321 11 1 1134555666654 356677777766766653
Q ss_pred -cC-cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCC-------CCHhH
Q psy15604 151 -KE-ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSS-------PVESV 221 (986)
Q Consensus 151 -~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~ 221 (986)
+. .....++.. +...|.+.+.. .+.+.+..++.+|+|+... ..++.|..++.. ....+
T Consensus 428 ~~~~~c~~~~v~~--i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rv 494 (1056)
T 1lsh_A 428 ANTVSCPDELLQP--LHDLLSQSSDR-AKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRV 494 (1056)
T ss_dssp TTCSSCCGGGTHH--HHHHHHHHHHT-TCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHH
T ss_pred ccCCCCCHHHHHH--HHHHHHHHHhc-CChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHH
Confidence 21 111122211 33444455555 5788889999999999442 356677777642 13468
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHh
Q psy15604 222 LFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG--RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMR 299 (986)
Q Consensus 222 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~ 299 (986)
+..|+.+|.+++...+ .. +-+.+++++. ..++.++..|...|. -+ +|... .+..+...+.
T Consensus 495 r~aAi~ALr~~~~~~p---~~-----v~~il~~i~~n~~e~~EvRiaA~~~Lm--~t-~P~~~-------~l~~ia~~l~ 556 (1056)
T 1lsh_A 495 QAEAIMALRNIAKRDP---RK-----VQEIVLPIFLNVAIKSELRIRSCIVFF--ES-KPSVA-------LVSMVAVRLR 556 (1056)
T ss_dssp HHHHHHTTTTGGGTCH---HH-----HHHHHHHHHHCTTSCHHHHHHHHHHHH--HT-CCCHH-------HHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhch---HH-----HHHHHHHHhcCCCCChHHHHHHHHHHH--HH-CcCHH-------HHHHHHHHHh
Confidence 8889999999984332 11 2345677774 356777776655552 21 23111 2356666666
Q ss_pred cCChHHHHHHHHHHHHHhhhC
Q psy15604 300 SYDYEKLLWCTSRVLKVLSVC 320 (986)
Q Consensus 300 ~~~~~~~~~~a~~aL~~Ls~~ 320 (986)
......+..-....|.+++..
T Consensus 557 ~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 557 REPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp TCSCHHHHHHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHHhc
Confidence 544444666666666666643
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=74.88 E-value=39 Score=36.07 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCc--cc-hhhhh--------
Q psy15604 506 DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR--QG-LLAIF-------- 574 (986)
Q Consensus 506 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~--~~-~~~i~-------- 574 (986)
+...+..++.+|..+.........++..+..+..+...|.+ ..+.++..++..|..+|..+ ++ ...+.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 46778889999999988877788888888899999888854 47889999999999988843 34 33322
Q ss_pred --ccCChHHHHHhcC-CCCHhHHHHHHHHHHHhhcCCCC------ChHHHHHhCcHHHHHHhhcC-CCHhHHHH
Q psy15604 575 --KSGGIPALVKLLS-SPVESVLFYAITTLHNLLLHQEG------SKMAVRLAGGLQKMVLLLGR-NNVKFLAI 638 (986)
Q Consensus 575 --~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~------~~~~v~~~g~v~~Lv~ll~~-~~~~v~~~ 638 (986)
+..-...++..+. +.+.+.+..++..+..+....++ .|..+...|. ..++..++. .++.+...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL-~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL-HQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH-HHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh-HHHHHHHhccCChhHHHH
Confidence 2334556777776 44556666666655555544443 2344554554 444455554 45554433
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=69.03 E-value=44 Score=35.69 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcc--c-hHHHH--------
Q psy15604 134 DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ--G-LLAIF-------- 202 (986)
Q Consensus 134 ~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~~~~--~-~~~i~-------- 202 (986)
+......++++|..+..+......+......+..+...|.+ .++.++..++..|..+|..++ + ...+.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 45678888899998887776666677776667888887765 688899999988888888753 4 44332
Q ss_pred --hcCChHHHHHhhC-CCCHhHHHHHHHHHHHHhcCCCCch------HHHHHcCcHHHHHHHhcc-CCHHHH
Q psy15604 203 --KSGGIPALVKLLS-SPVESVLFYAITTLHNLLLHQEGSK------MAVRLAGGLQKMVLLLGR-NNVKFL 264 (986)
Q Consensus 203 --~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~------~~i~~~g~i~~L~~ll~~-~~~~~~ 264 (986)
+..-..+++..+. ..+.+.+..+...+..+....++.. ..+... |+..++.-++. .++.+.
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~-GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GLHQVLQELREIENEDMK 220 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-THHHHHHHHTTCCCHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-ChHHHHHHHhccCChhHH
Confidence 2345666777776 4456677777777777774444322 234434 45555566654 445443
No 129
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=63.15 E-value=77 Score=38.97 Aligned_cols=218 Identities=12% Similarity=0.037 Sum_probs=125.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC-----cc
Q psy15604 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-----RQ 568 (986)
Q Consensus 494 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~-----~~ 568 (986)
.++.++..+.++++..+..|-..|..+-..+ +....+..+|..+.++.++..|+.+|.+.... ++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 3666777777788888888888887665443 45566666676667899999999999888652 12
Q ss_pred chhhhhccCChHHHHHhcCC-----CCHhHHHHHHHHHHHhhcCC-C-CChHHHHHhCcHHHHHHhhcCCCHhHHHHHHH
Q psy15604 569 GLLAIFKSGGIPALVKLLSS-----PVESVLFYAITTLHNLLLHQ-E-GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTD 641 (986)
Q Consensus 569 ~~~~i~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~-~-~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~ 641 (986)
....-++...+..+...-.+ .++.++...+.++..++... + .- .+.++.++.++.. ++........
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W------p~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW------PTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc------cHHHHHHHHHhCC-CHHHHHHHHH
Confidence 22222333344444443332 23556666667777776432 1 11 2345556665543 3344445556
Q ss_pred HHHHHhcC---Cc----------ccHHHHHhCCChHHHHH----HHhcCChhHHHHHHHHHHHHhhcCCCCchhHHhcCc
Q psy15604 642 CLQILAYG---NQ----------ESKLIILASQGPVELVR----IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGG 704 (986)
Q Consensus 642 aL~~L~~~---~~----------~~~~~~~~~~~~~~L~~----ll~~~~~~~~~~~~~~~L~~Ls~~~~~~~~l~~~g~ 704 (986)
.|..|... .. ..+..+.. . .+.++. ++.......+...+..++......-+ -..+++.+.
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~l 248 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-E-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchH
Confidence 66666542 10 01122222 2 334444 44444445555666666666654432 255667777
Q ss_pred HHHH-HHhhCCCCHHHHHHHHHHHHHhhcc
Q psy15604 705 MQAL-AMHLGHPSQRLVQNCLWTLRNLSDA 733 (986)
Q Consensus 705 ~~~L-~~ll~~~~~~v~~~al~~L~nLs~~ 733 (986)
++.| ..++ .++.++..|+.||..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 8877 4555 4678999999999998854
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=54.94 E-value=4e+02 Score=33.32 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=75.9
Q ss_pred ChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHhccc---C----cch-----hH
Q psy15604 90 DQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK---E----ASR-----HA 157 (986)
Q Consensus 90 ~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~la~~---~----~~~-----~~ 157 (986)
....+.....++..++..- -++.+ ...++.|+.++.+ +...+..+..+|..++.+ . ..| ..
T Consensus 109 ~~~vr~kla~~la~Ia~~d-~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~ 181 (1204)
T 3a6p_A 109 ENHIKDALSRIVVEMIKRE-WPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQT 181 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHH-STTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh-Ccccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 3455555566666665521 12223 2456788888866 556677788888888753 1 111 11
Q ss_pred hhhC-CchHHHHHHHHhcC------------------CCHHHHHHHHHHHHhhccCccchHHHHhcC--ChHHHHHhhCC
Q psy15604 158 IMNS-PQMVAALVHAISNS------------------NDLETTKGAVGTLHNLSHHRQGLLAIFKSG--GIPALVKLLSS 216 (986)
Q Consensus 158 i~~~-~~~i~~Lv~lL~~~------------------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g--~i~~Lv~lL~~ 216 (986)
+.+. +.++..+..+|+.. .+..+...++.++.+....... ..+++.. .++.+..++.
T Consensus 182 l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~- 259 (1204)
T 3a6p_A 182 LTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN- 259 (1204)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC-
Confidence 2211 11233344444321 1234666777777766554221 2223332 5667776665
Q ss_pred CCHhHHHHHHHHHHHHhcCC
Q psy15604 217 PVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 217 ~~~~~~~~a~~~L~~L~~~~ 236 (986)
+++++..|+.+|..+....
T Consensus 260 -~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 260 -EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp -CTTTHHHHHHHHHHHHTCC
T ss_pred -CHHHHHHHHHHHHHHHhCC
Confidence 5778999999999999543
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=51.08 E-value=2.5e+02 Score=29.72 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=52.1
Q ss_pred cCChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 576 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
.+.++.++.+-.+++.+++.+.+..|...+....+. + ..+++.|..++.++++.+...+..+..++.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~--~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---L--LKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---H--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 457889999988889999999999999998643322 1 345677888888888999888888777664
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.65 E-value=24 Score=32.34 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=55.4
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 193 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~ 193 (986)
++..|.+.|+++++.++..|+.+|-.+..+- .....+... .++..|+.++....++.++..++..+...+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~-~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR-DFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999998874 455556544 4788888888765688999999988877654
No 133
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.96 E-value=40 Score=32.85 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=56.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 193 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~ 193 (986)
++..|.+-+.+.++.++..|+.+|..+..+- .....|... .++..|.++++...++.+++.++..+...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999998874 345556554 4678888888876788999999988887754
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=47.38 E-value=1.3e+02 Score=30.55 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHHccC------CHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHH-hcCCCHHHHHHHHHHHHhhccC-c
Q psy15604 124 PELIKLLNDE------DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI-SNSNDLETTKGAVGTLHNLSHH-R 195 (986)
Q Consensus 124 ~~L~~ll~~~------~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~~a~~~L~~ls~~-~ 195 (986)
.....+++++ +......++..|..+|.+=..-.+|.+.. ...|-.++ ....++.+++.|++++..--++ |
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e--f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE--FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH--HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc--HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 4455666665 34456777788888888766666777632 24444444 2235778899999988887776 6
Q ss_pred cchHHHHhc--CChHHHHHhhC----C---CCHhHHHHHHHHHHHHhcCCCCchHHHHHcCcHHHHHHHhccC--CHHHH
Q psy15604 196 QGLLAIFKS--GGIPALVKLLS----S---PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN--NVKFL 264 (986)
Q Consensus 196 ~~~~~i~~~--g~i~~Lv~lL~----~---~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~ 264 (986)
+....+.+. ..+..+..-|. . ...-+++.-+.+|..|....... . ..++..|.+++... .+..+
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F----~-~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL----P-IYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----h-hccHHHHHHHHccCCCCHHHH
Confidence 655555442 23333332221 1 23346667778888888543222 1 44667777777665 67777
Q ss_pred HHHHHHHHHH
Q psy15604 265 AIVTDCLQIL 274 (986)
Q Consensus 265 ~~a~~aL~~L 274 (986)
..+...+..+
T Consensus 178 ~Kvl~li~d~ 187 (315)
T 3qml_C 178 IKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666665544
No 135
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=45.47 E-value=24 Score=35.11 Aligned_cols=102 Identities=10% Similarity=0.111 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHHHhcccCcc-hhHhhhCCchHHHHHHHHhcC-------CCHHHHHHHHHHHHhhccCc-cchHHHH
Q psy15604 132 DEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNS-------NDLETTKGAVGTLHNLSHHR-QGLLAIF 202 (986)
Q Consensus 132 ~~~~~~~~~a~~~L~~la~~~~~-~~~i~~~~~~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~ls~~~-~~~~~i~ 202 (986)
+.++..+-.++++++|+..++.. +..+... .....+++.+... .+..++..++..+.|++..- ..+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 45678899999999999999884 5544432 2234444443211 24568888888999997751 1111
Q ss_pred hcCChHHHHHhhCC---------CCHhHHHHHHHHHHHHhcCCC
Q psy15604 203 KSGGIPALVKLLSS---------PVESVLFYAITTLHNLLLHQE 237 (986)
Q Consensus 203 ~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~~~~ 237 (986)
+......++..+.. .+++....++.+|+++...++
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 12233445554442 377899999999999996544
No 136
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.37 E-value=1.2e+02 Score=30.73 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=92.9
Q ss_pred cHHHHHHHhcCC---ChhhHHHHHhHHHHHHHhcCCCcchhHHHhCCCHHHHHHHH--ccCCHHHHHHHHHHHHH-hccc
Q psy15604 78 AIPELIKLLNDE---DQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLL--NDEDQVVVSQAAMMVHQ-LSKK 151 (986)
Q Consensus 78 ~i~~l~~ll~~~---~~~~~~~a~~aL~~l~~~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~-la~~ 151 (986)
.+..+.++++++ ...+...-..+|..|..++++.+.--.|.... .+.|-.++ ...++.+++.++++++. |-.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 566667777665 23333334567777887776665555554422 33333333 33567799999988876 4455
Q ss_pred CcchhHhhh-CCchHHHHHHHHhcC------CCHHHHHHHHHHHHhhccCccchHHHHhcCChHHHHHhhCCC--CHhHH
Q psy15604 152 EASRHAIMN-SPQMVAALVHAISNS------NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP--VESVL 222 (986)
Q Consensus 152 ~~~~~~i~~-~~~~i~~Lv~lL~~~------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~ 222 (986)
|..-+.+.+ .+.++..+..-|... .....+..-+.+|..|..++. .+ ...++..|.+++... ++.++
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHH
Confidence 655444443 355666666555431 234566666778888888752 12 245778888888666 88899
Q ss_pred HHHHHHHHHHh
Q psy15604 223 FYAITTLHNLL 233 (986)
Q Consensus 223 ~~a~~~L~~L~ 233 (986)
..++..+..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 98888887666
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=39.77 E-value=64 Score=29.47 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=55.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~ 565 (986)
..++..+.+-+++.++.++..|+..|-.+..+-. ..+..+.+.+++..|+.++....++.++..+...+...+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999998877643 3333334458888888888765678899888877776654
No 138
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=39.35 E-value=61 Score=34.67 Aligned_cols=102 Identities=11% Similarity=0.118 Sum_probs=68.1
Q ss_pred cCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhcC-------CCHHHHHHHHHHHHhhccCcc-chHHHHh
Q psy15604 132 DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-------NDLETTKGAVGTLHNLSHHRQ-GLLAIFK 203 (986)
Q Consensus 132 ~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~ls~~~~-~~~~i~~ 203 (986)
+..+..+-.++++++|+..++.....+.........+++.+... .+..++..++..+.|++..-. .+. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 45678899999999999999986666665433345666655321 245688888888999977511 111 1
Q ss_pred cCChHHHHHhhC---------CCCHhHHHHHHHHHHHHhcCC
Q psy15604 204 SGGIPALVKLLS---------SPVESVLFYAITTLHNLLLHQ 236 (986)
Q Consensus 204 ~g~i~~Lv~lL~---------~~~~~~~~~a~~~L~~L~~~~ 236 (986)
....+.+..++. ..+++....++.+|++|....
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 123345555554 248889999999999999533
No 139
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.21 E-value=52 Score=32.70 Aligned_cols=130 Identities=12% Similarity=-0.004 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCcc-chhhhhccCChHHHHHhcC-
Q psy15604 510 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ-GLLAIFKSGGIPALVKLLS- 587 (986)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~Lv~lL~- 587 (986)
+.-+...++-+..++... +.+..++...-.+.++..+..++++++|+-.++. ++..+........++..+.
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 445666777666666532 3333333333224478899999999999988877 5655554333444444431
Q ss_pred ---C----CCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcC---------CCHhHHHHHHHHHHHHhcC
Q psy15604 588 ---S----PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR---------NNVKFLAIVTDCLQILAYG 649 (986)
Q Consensus 588 ---~----~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~---------~~~~v~~~a~~aL~~L~~~ 649 (986)
+ ++..++..++..+.|++...-..+. +......+++.+.. .+++....+.-++.+|.+.
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 1 2557888889999999864211111 12233445554442 3667777788888888874
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=35.87 E-value=49 Score=30.50 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=56.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhc-----CCCHHHHHHHHHHHHhhccC
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISN-----SNDLETTKGAVGTLHNLSHH 194 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~-----~~~~~~~~~a~~~L~~ls~~ 194 (986)
++..|.+.++++++.++..|+.+|-.+..+- .....+.+. .++..|+.++.. ..+..++..++..+...+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999999874 456566654 478899998863 24689999999888887544
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=35.46 E-value=73 Score=28.19 Aligned_cols=70 Identities=7% Similarity=0.145 Sum_probs=52.6
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccCc--chhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA--SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 193 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~ 193 (986)
++..|.+-|.++++.++..|+.+|-.+..+-. ....+... .++..++.+++. .++.++..++..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~-~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR-DFASEVSNVLNK-GHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH-HHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 34556677888899999999999988887753 34445443 477888888876 688999999988887754
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.04 E-value=98 Score=27.72 Aligned_cols=72 Identities=10% Similarity=-0.076 Sum_probs=52.8
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhc-cChhhHHHHHhCCCHHHHHHHHhcC-----ChHHHHHHHHHHHHHhhh
Q psy15604 248 GLQKMVLLLGRNNVKFLAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRSY-----DYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 248 ~i~~L~~ll~~~~~~~~~~a~~aL~~La~-~~~~~~~~~~~~g~v~~L~~ll~~~-----~~~~~~~~a~~aL~~Ls~ 319 (986)
++..|.+-+.+.++.++..+...|-.+.. ........+.+...+..|++++... .+..++..++..+...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45677777788889888888888777764 3344666777777888899999742 345688888888877664
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.06 E-value=47 Score=32.21 Aligned_cols=71 Identities=6% Similarity=0.108 Sum_probs=54.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcccC--cchhHhhhCCchHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q psy15604 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE--ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 193 (986)
Q Consensus 122 ~i~~L~~ll~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~~ls~ 193 (986)
++..|.+-|.++++.++..|+.+|..+..+- .....+.+.. ++..|+.++.+..+..++..++..+...+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~-fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE-NCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4455677788999999999999999999874 4555666543 778888888766688899888877776643
No 144
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=31.50 E-value=57 Score=34.19 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHhcccCcchhHhhhCCchHHHHHHHHhc----C---CCHHHHHHHHHHHHhhccCcc-chHHHHh
Q psy15604 132 DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN----S---NDLETTKGAVGTLHNLSHHRQ-GLLAIFK 203 (986)
Q Consensus 132 ~~~~~~~~~a~~~L~~la~~~~~~~~i~~~~~~i~~Lv~lL~~----~---~~~~~~~~a~~~L~~ls~~~~-~~~~i~~ 203 (986)
+..+..+..++++++|+..++.....+.........+++.+.. . .+..++..++..+.|++..-. .+. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4567889999999999999988666665442223444444421 1 245688888888999977511 111 1
Q ss_pred cCChHHHHHhhC---------CCCHhHHHHHHHHHHHHhcC
Q psy15604 204 SGGIPALVKLLS---------SPVESVLFYAITTLHNLLLH 235 (986)
Q Consensus 204 ~g~i~~Lv~lL~---------~~~~~~~~~a~~~L~~L~~~ 235 (986)
....+.+...+. ..+++....++.+|++|...
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 123345555554 25888999999999999953
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=31.12 E-value=2e+02 Score=25.36 Aligned_cols=86 Identities=8% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHHhcCCchhhhhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHH
Q psy15604 477 AVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKG 555 (986)
Q Consensus 477 a~~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~ 555 (986)
.++++++... .-...++..+.+-+++.++.++..|+..|-.+..+-.. .+..+.+..++..++.++.. .++.++..
T Consensus 28 eicD~I~~~~--~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~k 104 (140)
T 3ldz_A 28 DICDKVGQSR--TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEK 104 (140)
T ss_dssp HHHHHHTTST--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHH
T ss_pred HHHHHHHCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHH
Confidence 3555555432 12244577788889999999999999999888776543 33334445788888888755 37888888
Q ss_pred HHHHHHHhhC
Q psy15604 556 AVGTLHNLSH 565 (986)
Q Consensus 556 a~~~L~~ls~ 565 (986)
+...+...+.
T Consensus 105 il~li~~W~~ 114 (140)
T 3ldz_A 105 LKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.70 E-value=89 Score=30.34 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=56.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls~ 565 (986)
..++..|.+-+++.++.++..|+..|-.+..+-.. ....+.+..++..|..+++...++.++..++..+...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 34577788888999999999999999988777553 333334457888888888666678888888887777754
No 147
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=28.64 E-value=9.5e+02 Score=29.97 Aligned_cols=136 Identities=11% Similarity=0.056 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHh----------cCChHHHHH----hhCCCCHhHHHHHHHHHHHHhcCCCCchHH
Q psy15604 177 DLETTKGAVGTLHNLSHHRQGLLAIFK----------SGGIPALVK----LLSSPVESVLFYAITTLHNLLLHQEGSKMA 242 (986)
Q Consensus 177 ~~~~~~~a~~~L~~ls~~~~~~~~i~~----------~g~i~~Lv~----lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 242 (986)
+...+..+-.++.+-.........++. ....+.++. ++.+.++.++..+...-..+....+.+
T Consensus 358 n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~--- 434 (1323)
T 3s4w_B 358 STQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTY--- 434 (1323)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHH---
T ss_pred CchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccch---
Confidence 445667777777776665332222221 345555553 346778888887776666665444332
Q ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Q psy15604 243 VRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 243 i~~~g~i~~L~~ll~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~a~~aL~~Ls~ 319 (986)
....++..|+....+++......+...|..|+..++..-... .-.+..++..+.+-+...+ ......|..++.
T Consensus 435 -~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~--a~~l~giLD~l~~l~~~Qi-Rklf~iL~~laf 507 (1323)
T 3s4w_B 435 -CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLN--AAFVKGILDYLENMSPQQI-RKIFCILSTLAF 507 (1323)
T ss_dssp -HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHT--HHHHHGGGGGGGGCCHHHH-HHHHHHHHHHHH
T ss_pred -hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHH--HHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHc
Confidence 223346777777777777777778889999987555322111 0112333444444454433 345677777763
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=26.48 E-value=1.3e+02 Score=26.91 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=54.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHHHhc-----CChHHHHHHHHHHHHHhhh
Q psy15604 248 GLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVRIMRS-----YDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 248 ~i~~L~~ll~~~~~~~~~~a~~aL~~La~~-~~~~~~~~~~~g~v~~L~~ll~~-----~~~~~~~~~a~~aL~~Ls~ 319 (986)
++..|.+-+.+.++.++..|...|-.+..+ ....+..+.+...+..|++++.. ..+..++..++..+...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777788889999998888888888752 45577777777888888888874 2345688888887776664
No 149
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=26.26 E-value=1.3e+02 Score=32.15 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHhhhccccchhhhcccCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHhhCC-ccchhhhhc
Q psy15604 504 DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS-------NDLETTKGAVGTLHNLSHH-RQGLLAIFK 575 (986)
Q Consensus 504 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~i~~L~~lL~~~-------~~~~~~~~a~~~L~~ls~~-~~~~~~i~~ 575 (986)
+..+..+..+++++.|+-.++.....++........+++.+... .+..++..++..+.|++.. ...+. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 45678889999999999888875455554333445566655221 1457888999999999872 11111 1
Q ss_pred cCChHHHHHhcC---------CCCHhHHHHHHHHHHHhhcCC
Q psy15604 576 SGGIPALVKLLS---------SPVESVLFYAITTLHNLLLHQ 608 (986)
Q Consensus 576 ~~~i~~Lv~lL~---------~~~~~v~~~a~~aL~nl~~~~ 608 (986)
...+..+..++. ..+++....++.+|++|....
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 122344555554 247889999999999999543
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=25.77 E-value=1.6e+02 Score=26.24 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=55.4
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhccc-cchhhhcccCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-SRHAIMNSPQMVAALVHAISN-----SNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~~~~i~~L~~lL~~-----~~~~~~~~~a~~~L~~ls~ 565 (986)
..++..+.+-+++.++.++..|+..|-.+..+-. ..+.-+.+..++..|+.++.. ..++.++..+...+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3447778888899999999999999999877744 333344445889999988863 1367888888877777654
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.66 E-value=1.1e+02 Score=28.01 Aligned_cols=72 Identities=8% Similarity=-0.064 Sum_probs=53.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHHHhc-----CChHHHHHHHHHHHHHhhh
Q psy15604 248 GLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVRIMRS-----YDYEKLLWCTSRVLKVLSV 319 (986)
Q Consensus 248 ~i~~L~~ll~~~~~~~~~~a~~aL~~La~~-~~~~~~~~~~~g~v~~L~~ll~~-----~~~~~~~~~a~~aL~~Ls~ 319 (986)
++..|.+-+.+.++.++..+...|-.+..+ ....+..+.+...+..|++++.. ..+..++..++..+...+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777888888999998888888888763 34566677777888899999863 2345688888888777664
No 152
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=25.55 E-value=1.8e+02 Score=25.90 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=55.7
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhC
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISN-----SNDLETTKGAVGTLHNLSH 565 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~-----~~~~~~~~~a~~~L~~ls~ 565 (986)
..++..+.+-+++.++.++..|+..|-.+..+-.. .+.-+.+..++..|+.++.. ..++.++..+...+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34577788888999999999999999988776553 33334445888899988853 2468888888888877764
No 153
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=25.34 E-value=5e+02 Score=25.56 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=48.0
Q ss_pred CChHHHHHhcCCCCHhHHHHHHHHHHHhhcCCCCChHHHHHhCcHHHHHHhhcCCCHhHHHHHHHHHHHHh
Q psy15604 577 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647 (986)
Q Consensus 577 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~v~~~g~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 647 (986)
..++.++.+..+++.+++...+..+...+...+.. -...++.|..+++++++.+...+..+..++.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34566667666778899999999999888544321 1345677888888888888888877776654
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.76 E-value=1.8e+02 Score=27.88 Aligned_cols=73 Identities=7% Similarity=0.112 Sum_probs=53.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhhcccc-chhhhcccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q psy15604 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS 564 (986)
Q Consensus 492 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~~~~i~~L~~lL~~~~~~~~~~~a~~~L~~ls 564 (986)
..++..|.+-|++.++.++..|+..|-.+..+-.. ....+.+..++..|+.++.+..++.++..+...+...+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999998777543 33333334788888888765556788887776666654
Done!