RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15604
(986 letters)
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 70.8 bits (174), Expect = 1e-14
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 199 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 258
A+ ++GG+PALV LLSS E+V A L NL + AV AGGL +V LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 259 NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 318
+ + + L+ LA G +++KLI+L + G +LV ++ S + E + + L L+
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLA 119
Score = 70.8 bits (174), Expect = 1e-14
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 630
A+ ++GG+PALV LLSS E+V A L NL + AV AGGL +V LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 631 NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 690
+ + + L+ LA G +++KLI+L + G +LV ++ S + E + + L L+
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLA 119
Score = 59.6 bits (145), Expect = 9e-11
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 853 VCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNL 912
V Q GG+ ALV + + E + A AL +L++ + ++ Q V G+ +V L
Sbjct: 3 VIQAGGLPALVSLLSS--SDENVQREAAWALSNLSAGN--NDNIQAVVEAG-GLPALVQL 57
Query: 913 LNPPSRWPLVKAVIGLIRNLALCQANHAP-LREYGAIHLLVILLNRAFTDTQRV 965
L +VKA + +RNLA ++ + E G + LV LL+ + D Q+
Sbjct: 58 LKSED-EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKN 110
Score = 56.6 bits (137), Expect = 1e-09
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 665 ELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNC 723
LV ++ S D E + + L LS ++ N A+VEAGG+ AL L + +V+
Sbjct: 11 ALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69
Query: 724 LWTLRNLSDAGT--KVDGLES-LLQSLVQLLASQDINVITCAAGV 765
LW LRNL+ K+ LE+ + LV LL S + ++ A G
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114
Score = 55.0 bits (133), Expect = 4e-09
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETT 181
+P L+ LL+ D+ V +AA + LS + + ALV + S D E
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVV 66
Query: 182 KGAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
K A+ L NL+ L + ++GG+P LV LL S E + A L NL
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118
Score = 55.0 bits (133), Expect = 4e-09
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETT 553
+P L+ LL+ D+ V +AA + LS + + ALV + S D E
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVV 66
Query: 554 KGAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
K A+ L NL+ L + ++GG+P LV LL S E + A L NL
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118
Score = 53.1 bits (128), Expect = 2e-08
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 293 ELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNC 351
LV ++ S D E + + L LS ++ N A+VEAGG+ AL L + +V+
Sbjct: 11 ALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69
Query: 352 LWTLRNLSDAGTK--------------VSLLFNEIENIQRVAAGLLCELAQ 388
LW LRNL+ V+LL + E+IQ+ A G L LA
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 48.8 bits (117), Expect = 7e-07
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 326 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------------VSLLFNE 371
A+++AGG+ AL L + + + W L NLS V LL +E
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 372 IENIQRVAAGLLCELAQDKE-GAETIEAEGATAPLTDLLHSRNEGVEILIQGV 423
E + + A L LA E + G L +LL S NE ++ G
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114
Score = 46.5 bits (111), Expect = 5e-06
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 852 TVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVN 911
V + GG+ ALVQ + + + EE+ + A+ ALR+L + E + V G+ +VN
Sbjct: 44 AVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGP---EDNKLIVLEAGGVPKLVN 98
Query: 912 LLNPPSRWPLVKAVIGLIRNLA 933
LL+ + K G + NLA
Sbjct: 99 LLDSS-NEDIQKNATGALSNLA 119
Score = 46.2 bits (110), Expect = 6e-06
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVV 137
+P L+ LL+ D++ A A+ L + D A + +P L++LL ED+ V
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSA--GNNDNIQAVVEAGGLPALVQLLKSEDEEV 65
Query: 138 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS 192
V A + L+ I+ V LV + +S++ + K A G L NL+
Sbjct: 66 VKAALWALRNLAAGPEDNKLIVLEAGGVPKLV-NLLDSSNEDIQKNATGALSNLA 119
Score = 45.8 bits (109), Expect = 8e-06
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSKTLVT 59
+ ALV +S+S++ + A L NLS + A+ ++GG+PALV+LL
Sbjct: 6 AGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----- 59
Query: 60 ASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLA 119
S + ++ A A+ L ED L +P+L+ LL+ ++D A
Sbjct: 60 -SEDEEVVKA-----ALWALRNL--AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111
Query: 120 TRAI 123
T A+
Sbjct: 112 TGAL 115
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 452 PSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVS 511
+ Q + A A+ L+ + AVV +P L++LL ED+ VV
Sbjct: 21 ENVQREAAW--ALSNLSAGNNDNIQAVVEA-----------GGLPALVQLLKSEDEEVVK 67
Query: 512 QAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS 564
A + L+ I+ V LV + +S++ + K A G L NL+
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLV-NLLDSSNEDIQKNATGALSNLA 119
Score = 36.1 bits (84), Expect = 0.015
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 698 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK-----VDGLESLLQSLVQLLA 752
A+++AGG+ AL L + + + W L NLS V+ L +LVQLL
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA--GGLPALVQLLK 59
Query: 753 SQDINVITCAAGV 765
S+D V+ A
Sbjct: 60 SEDEEVVKAALWA 72
Score = 30.7 bits (70), Expect = 1.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 741 ESLLQSLVQLLASQDINVITCAAGV-------------TVCQVGGVEALVQ 778
L +LV LL+S D NV AA V + GG+ ALVQ
Sbjct: 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQ 56
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family does
not contain all known armadillo repeats.
Length = 41
Score = 45.9 bits (110), Expect = 9e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 320 CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 360
NK A++EAG + L L P + + + W L NL+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 45.9 bits (110), Expect = 9e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 692 CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 732
NK A++EAG + L L P + + + W L NL+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 41.3 bits (98), Expect = 4e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 200 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
A+ ++G +P LV+LLSSP E V A L NL
Sbjct: 7 AVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
Score = 41.3 bits (98), Expect = 4e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
A+ ++G +P LV+LLSSP E V A L NL
Sbjct: 7 AVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
Score = 31.7 bits (73), Expect = 0.11
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 852 TVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTS 888
V + G V LVQ + + EE+ E A AL +L +
Sbjct: 7 AVIEAGAVPPLVQLLSS--PDEEVQEEAAWALSNLAA 41
Score = 26.3 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSH 32
V LV +S S D E + A L NL+
Sbjct: 14 VPPLVQLLS-SPDEEVQEEAAWALSNLAA 41
Score = 26.3 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 165 VAALVHAISNSNDLETTKGAVGTLHNLSH 193
V LV +S S D E + A L NL+
Sbjct: 14 VPPLVQLLS-SPDEEVQEEAAWALSNLAA 41
Score = 26.3 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 537 VAALVHAISNSNDLETTKGAVGTLHNLSH 565
V LV +S S D E + A L NL+
Sbjct: 14 VPPLVQLLS-SPDEEVQEEAAWALSNLAA 41
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats. Approx. 40
amino acid repeat. Tandem repeats form superhelix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. Involved in transducing
the Wingless/Wnt signal. In plakoglobin arm repeats bind
alpha-catenin and N-cadherin.
Length = 41
Score = 45.1 bits (108), Expect = 2e-06
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 320 CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 360
NK A+V+AGG+ AL L + +V+ W L NLS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 45.1 bits (108), Expect = 2e-06
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 692 CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 732
NK A+V+AGG+ AL L + +V+ W L NLS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 41.3 bits (98), Expect = 4e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 200 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
A+ +GG+PALV+LL S E V+ A L NL
Sbjct: 7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Score = 41.3 bits (98), Expect = 4e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
A+ +GG+PALV+LL S E V+ A L NL
Sbjct: 7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Score = 30.5 bits (70), Expect = 0.32
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 240 KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 276
K AV AGGL +V LL + + + L L+
Sbjct: 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 30.5 bits (70), Expect = 0.32
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 612 KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAY 648
K AV AGGL +V LL + + + L L+
Sbjct: 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 30.5 bits (70), Expect = 0.32
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSK 150
+P L++LL ED+ VV +AA + LS
Sbjct: 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 30.5 bits (70), Expect = 0.32
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSK 522
+P L++LL ED+ VV +AA + LS
Sbjct: 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 29.7 bits (68), Expect = 0.44
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 852 TVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTS 888
V GG+ ALV+ + + + EE+ + A AL +L+S
Sbjct: 7 AVVDAGGLPALVELLKS--EDEEVVKEAAWALSNLSS 41
Score = 28.5 bits (65), Expect = 1.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 893 SEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLA 933
+ + AV G+ +V LL +VK + NL+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLS 40
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 44.1 bits (105), Expect = 4e-04
Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 65/277 (23%)
Query: 43 SGGIPALVKLLSKTLVTASSNNTL----------ILQDDADLATRAIPELIKLLNDEDQD 92
S +VKL+ AS++ TL + ++ DLA + K L +
Sbjct: 40 SFLFFEVVKLV------ASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNPL 93
Query: 93 DADLATRAI-------------PELIKLLNDED---------------QDDADLATRA-I 123
LA R + P++ KLL D D + D DL +
Sbjct: 94 IRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRDFLV 153
Query: 124 PELIKLLNDEDQVVVSQAAMMVHQLSK--KEASRHAIMNSPQMVAALVHAISNSNDLETT 181
PEL +LL+D+D VVS A +++++ K + + P +V L + ++ N
Sbjct: 154 PELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLL---PLLVRRLCNLLTVCNPWLQV 210
Query: 182 KGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 241
K + L + + ++ LL + +VL+ A+ T+ +L E +
Sbjct: 211 K-ILRLLTRYAPQDPREPKEL----LEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVL 265
Query: 242 AVRLAGGLQKMVLLLG--RNNVKFLAIVTDCLQILAY 276
AV + LL N++++A+ L +
Sbjct: 266 AV------NALGRLLSSPDENLRYVAL--RNLNKILE 294
Score = 38.7 bits (91), Expect = 0.013
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 484 YQDDADLATRA-IPELIKLLNDEDQVVVSQAAMMVHQLSK--KEASRHAIMNSPQMVAAL 540
Y+ D DL +PEL +LL+D+D VVS A +++++ K + + P +V L
Sbjct: 141 YRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLL---PLLVRRL 197
Query: 541 VHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITT 600
+ ++ N K + L + + ++ LL + +VL+ A+ T
Sbjct: 198 CNLLTVCNPWLQVK-ILRLLTRYAPQDPREPKEL----LEDILNLLQNSNNAVLYEAVKT 252
Query: 601 LHNLLLHQEGSKMAVRLAGGLQKMVLLLG--RNNVKFLAIVTDCLQILAY 648
+ +L E +AV + LL N++++A+ L +
Sbjct: 253 IIHLDPEPELIVLAV------NALGRLLSSPDENLRYVAL--RNLNKILE 294
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 43.9 bits (104), Expect = 4e-04
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA---IMNSPQMVAALVHAISNSNDLE 179
IP L+ LL AA ++ +S S H I ++ +V +L + N +
Sbjct: 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160
Query: 180 TT-KGAV-GTLHNLSHHRQGLL-AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 236
+G + G L NL G A ++GG+ LVKLLSS A + L L++
Sbjct: 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF 220
Query: 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFL-AIVTDCLQILAYGNQESKLIILASQGPVELV 295
E S V AG +++++ LLG+ N + A L+ L+ ++E+K I + G L+
Sbjct: 221 ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280
Query: 296 RIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ 345
+ E + ++ L+ ++ + A + GGM AL ++LG S+
Sbjct: 281 NATVAPSKEFMQGEFAQALQENAMGAL---ANI-CGGMSALILYLGELSE 326
Score = 43.9 bits (104), Expect = 4e-04
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA---IMNSPQMVAALVHAISNSNDLE 551
IP L+ LL AA ++ +S S H I ++ +V +L + N +
Sbjct: 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160
Query: 552 TT-KGAV-GTLHNLSHHRQGLL-AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 608
+G + G L NL G A ++GG+ LVKLLSS A + L L++
Sbjct: 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF 220
Query: 609 EGSKMAVRLAGGLQKMVLLLGRNNVKFL-AIVTDCLQILAYGNQESKLIILASQGPVELV 667
E S V AG +++++ LLG+ N + A L+ L+ ++E+K I + G L+
Sbjct: 221 ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280
Query: 668 RIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ 717
+ E + ++ L+ ++ + A + GGM AL ++LG S+
Sbjct: 281 NATVAPSKEFMQGEFAQALQENAMGAL---ANI-CGGMSALILYLGELSE 326
Score = 42.4 bits (100), Expect = 0.001
Identities = 91/377 (24%), Positives = 143/377 (37%), Gaps = 87/377 (23%)
Query: 210 LVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN-------VK 262
LV L++ V I L +L + G A+ G+Q ++ LLG ++ V
Sbjct: 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVA 468
Query: 263 FLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 322
LAI+TD ESK I A+ G LV+++ + +K ++ VL L S
Sbjct: 469 LLAILTD-------EVDESKWAITAAGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSE 520
Query: 323 NKPAIVE-AGGMQALAMHL---GHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRV 378
+ A VE AG + AL L G Q + L L +DA T I ++
Sbjct: 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT-----------ISQL 569
Query: 379 AAGLLCELAQDKEGAETIEAEG---ATAPLTDLLH---SRNEGVEILIQGVHKIFKIHKI 432
A LL +L + K ++ G + A L DL+ + N+ + LIQ
Sbjct: 570 TALLLGDLPESK--VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ----------- 616
Query: 433 NIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLAT 492
L E TQ A + + + Q L ++
Sbjct: 617 -----------LLSSSKE--ETQEKAA--SVLADIFSSRQDLCESL-----------ATD 650
Query: 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS------N 546
I IKLL + + V +Q+A + LS+ +I + ++ A AI
Sbjct: 651 EIINPCIKLLTNNTEAVATQSARALAALSR------SIKENRKVSYAAEDAIKPLIKLAK 704
Query: 547 SNDLETTKGAVGTLHNL 563
S+ +E + AV L NL
Sbjct: 705 SSSIEVAEQAVCALANL 721
Score = 37.8 bits (88), Expect = 0.033
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 49 LVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLL 108
++ +L L AS + ++++ + A A+ LI+LL+ ++ + A + ++
Sbjct: 584 VLDVLGHVLSVASLED--LVREGSA-ANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640
Query: 109 NDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAAL 168
D ++ I IKLL + + V +Q+A + LS+ +I + ++ A
Sbjct: 641 QD--LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR------SIKENRKVSYAA 692
Query: 169 VHAIS------NSNDLETTKGAVGTLHNL 191
AI S+ +E + AV L NL
Sbjct: 693 EDAIKPLIKLAKSSSIEVAEQAVCALANL 721
Score = 32.4 bits (74), Expect = 1.4
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 209 ALVKLLS-SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 260
ALV LL P E + AI L NL++H +K AV AGG+Q + LL +N
Sbjct: 1779 ALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSN 1831
Score = 32.4 bits (74), Expect = 1.4
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 581 ALVKLLS-SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 632
ALV LL P E + AI L NL++H +K AV AGG+Q + LL +N
Sbjct: 1779 ALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSN 1831
Score = 31.6 bits (72), Expect = 2.8
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 38 LAIFKSGGIPALVKLLS----KTLVTASSNNTLILQDDADL-----ATRAIPELIKLLND 88
LA+ ++G + AL K LS + A+S IL +L A A+ +L+ +L
Sbjct: 1184 LAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRL 1243
Query: 89 EDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND--EDQVVVSQAAMMVH 146
+ A RA L +L + E D++LA +A+ L+++LN E + + A++
Sbjct: 1244 GSRSARYSAARA---LQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALI-- 1298
Query: 147 QLSKKEASRHAIMNSPQM--VAALVHAISNSNDLETTKGAV---GTLHNLSHHRQGLLAI 201
+LS S+ + + + L +S+ + LE + A L + R A
Sbjct: 1299 KLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAA- 1357
Query: 202 FKSGGIPALVKLLSSPVESVLFYAITTLHNLL 233
+ I L+ LL S + + L LL
Sbjct: 1358 --ARCIEPLISLLVSESSTAQEAGVCALDRLL 1387
Score = 30.1 bits (68), Expect = 8.3
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 36/186 (19%)
Query: 582 LVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN-------VK 634
LV L++ V I L +L + G A+ G+Q ++ LLG ++ V
Sbjct: 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVA 468
Query: 635 FLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 694
LAI+TD ESK I A+ G LV+++ + +K ++ VL L S
Sbjct: 469 LLAILTD-------EVDESKWAITAAGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSE 520
Query: 695 NKPAIVE-AGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLAS 753
+ A VE AG + AL LW L+N G K G E ++L +L+ +
Sbjct: 521 DIRACVESAGAVPAL---------------LWLLKN---GGPK--GQEIAAKTLTKLVRT 560
Query: 754 QDINVI 759
D I
Sbjct: 561 ADAATI 566
Score = 30.1 bits (68), Expect = 8.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 365 VSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRN 413
+SLL +E Q L L D++ AE + A GA PL L+ N
Sbjct: 1365 ISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTN 1413
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 42.6 bits (100), Expect = 7e-04
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 31/181 (17%)
Query: 69 QDDADLATRAIPELIKLLNDEDQDDADLAT---------RAIPELIKLLNDEDQDDADLA 119
+LA A EL+KLL DED A A+P L +LL+DED D A
Sbjct: 35 DLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAA 94
Query: 120 TRA---------IPELIKLL-NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV 169
A +P L++LL NDE++ V + AA + + + + L+
Sbjct: 95 ADALGELGDPEAVPPLVELLENDENEGVRAAAARAL-----------GKLGDERALDPLL 143
Query: 170 HAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSG-GIPALVKLLSSPVESVLFYAITT 228
A+ + + L ++ L IP L++LL V A +
Sbjct: 144 EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASA 203
Query: 229 L 229
L
Sbjct: 204 L 204
Score = 42.6 bits (100), Expect = 7e-04
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLAT---------RAIPELIKL 129
++ L + D +LA A EL+KLL DED A A+P L +L
Sbjct: 23 AAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLREL 82
Query: 130 LNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTL 188
L+DED V AA + +L P+ V LV + N + A L
Sbjct: 83 LSDEDPRVRDAAADALGEL-----------GDPEAVPPLVELLENDENEGVRAAAARAL 130
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 35.4 bits (82), Expect = 0.016
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVV 138
+ L++ L + D ++ A + L D A+P L++LL D D V
Sbjct: 1 LEALLEALLSDP--DPEVRAAAA-RALGELGDP---------EALPALLELLKDPDPEVR 48
Query: 139 SQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND 177
AA + + P+ + AL+ + + +D
Sbjct: 49 RAAAEAL-----------GKLGDPEALPALLELLQDDDD 76
Score = 33.1 bits (76), Expect = 0.10
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 467 LTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS 526
L++P ++ A + D A+P L++LL D D V AA +
Sbjct: 9 LSDPDPEVRAAAARALGELGDP----EALPALLELLKDPDPEVRRAAAEAL--------- 55
Query: 527 RHAIMNSPQMVAALVHAISNSND 549
+ P+ + AL+ + + +D
Sbjct: 56 --GKLGDPEALPALLELLQDDDD 76
Score = 30.0 bits (68), Expect = 1.1
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 67 ILQDDADLATRAIPELIKLLNDEDQDDADLAT-RAIPELIKLLNDEDQDDADLATRA--- 122
L D D RA + L +L A+P L++LL D D + A A
Sbjct: 7 ALLSDPDPEVRA--AAARAL-------GELGDPEALPALLELLKDPDPEVRRAAAEALGK 57
Query: 123 ------IPELIKLL-NDEDQVVVSQAAM 143
+P L++LL +D+D VV + AA
Sbjct: 58 LGDPEALPALLELLQDDDDAVVRAAAAS 85
Score = 27.3 bits (61), Expect = 9.9
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 224
+ AL+ A+ + D E A L L +PAL++LL P V
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELGDPE----------ALPALLELLKDPDPEVRRA 50
Query: 225 AITTLHNL 232
A L L
Sbjct: 51 AAEALGKL 58
Score = 27.3 bits (61), Expect = 9.9
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 537 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 596
+ AL+ A+ + D E A L L +PAL++LL P V
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELGDPE----------ALPALLELLKDPDPEVRRA 50
Query: 597 AITTLHNL 604
A L L
Sbjct: 51 AAEALGKL 58
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 38.3 bits (89), Expect = 0.021
Identities = 55/292 (18%), Positives = 115/292 (39%), Gaps = 14/292 (4%)
Query: 81 ELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDAD--LATRAIPELIKLL-NDEDQVV 137
EL +L DD + +A+ + KLL+ E + +P ++ + + ++
Sbjct: 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDML 131
Query: 138 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG 197
+AA + ++ + ++ V + +S++ D + + AV L N++ +G
Sbjct: 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED-DVREQAVWALGNIAGDSEG 190
Query: 198 LL-AIFKSGGIPALVKLL--SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL 254
+ + G + L+ LL S+ S+L A TL NL G + Q + +
Sbjct: 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL---CRGKNPPPDWSNISQALPI 247
Query: 255 LLGRNNVKFLAIVTDCLQILAY---GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTS 311
L + ++ D ++Y G E +L P LV ++ +
Sbjct: 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307
Query: 312 RVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGT 363
V +++ I+ G ++A L P + + + WT+ N++ AG
Sbjct: 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGN 358
Score = 36.0 bits (83), Expect = 0.10
Identities = 78/333 (23%), Positives = 126/333 (37%), Gaps = 48/333 (14%)
Query: 103 ELIKLLNDEDQDDADLATRAIPELIKLLNDED----QVVVSQAAMMVHQLSKKEASRHAI 158
EL +L DD + +A+ + KLL+ E Q V+ A +V + E
Sbjct: 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVI--DAGVVPRFV--EFMDEIQ 127
Query: 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPV 218
+ Q AA S + TK + +G +P ++LLSS
Sbjct: 128 RDMLQFEAAWALTNIASGTTQQTK-----------------VVVDAGAVPLFIQLLSSTE 170
Query: 219 ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN--NVKFLAIVTDCLQILAY 276
+ V A+ L N+ EG + V G L+ ++ LL + ++ L T L L
Sbjct: 171 DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230
Query: 277 GNQESKLIILASQGPVELVRIMRSYDYEKL---LWCTSRVLKVLSVCSSNKPAIVEAGGM 333
G SQ L +++ S D E L W S + + A+++ G
Sbjct: 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQ---AVLDVGIP 287
Query: 334 QALAMHLGHPSQRLVQNCLWTLRNL---SDAGTKV-----------SLLFNEIENIQRVA 379
L L H S ++ L ++ N+ SD T+V SLL + ENI++ A
Sbjct: 288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEA 347
Query: 380 AGLLCEL-AQDKEGAETIEAEGATAPLTDLLHS 411
+ + A + E + + PL LL S
Sbjct: 348 CWTISNITAGNTEQIQAVIDANLIPPLIHLLSS 380
Score = 34.9 bits (80), Expect = 0.25
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 11/194 (5%)
Query: 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN- 631
+ +G +P ++LLSS + V A+ L N+ EG + V G L+ ++ LL +
Sbjct: 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212
Query: 632 -NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKL---LWCTSRVLK 687
++ L T L L G SQ L +++ S D E L W S +
Sbjct: 213 IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272
Query: 688 VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL---SDAGTKVDGLESLL 744
+ A+++ G L L H S ++ L ++ N+ SD T+V L
Sbjct: 273 GPNEKIQ---AVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGAL 329
Query: 745 QSLVQLLASQDINV 758
++ LL+S N+
Sbjct: 330 KAFRSLLSSPKENI 343
Score = 33.7 bits (77), Expect = 0.58
Identities = 54/298 (18%), Positives = 94/298 (31%), Gaps = 102/298 (34%)
Query: 13 NSNDLETTKGAVGTLHNL--SHHRQGLLAIFKSGGIPALVKLLSK--------------- 55
S+D+E AV L + + +G +P V+ + +
Sbjct: 81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALT 140
Query: 56 TLVTASSNNTLILQDDADLATRAIPELIKLLNDEDQD--------------------DAD 95
+ + ++ T ++ D A+P I+LL+ + D D
Sbjct: 141 NIASGTTQQTKVVVD-----AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195
Query: 96 LATRAIPELIKLLND----------------------EDQDDADLATRAIPELIKLLNDE 133
L A+ L+ LL D ++A+P L KL+
Sbjct: 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR 255
Query: 134 DQVVVSQAAMMVHQLS--KKEASRHAIMNS---PQMVAALVHA--------------ISN 174
D V+ A + LS E + A+++ ++V L H I
Sbjct: 256 DPEVLVDACWAISYLSDGPNEKIQ-AVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314
Query: 175 SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
+D +T I G + A LLSSP E++ A T+ N+
Sbjct: 315 GSDDQTQ------------------VIINCGALKAFRSLLSSPKENIRKEACWTISNI 354
Score = 32.6 bits (74), Expect = 1.3
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 38/141 (26%)
Query: 483 NYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLS--KKEASRHAIMNS---PQMV 537
N D ++A+P L KL+ D V+ A + LS E + A+++ ++V
Sbjct: 233 NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQ-AVLDVGIPGRLV 291
Query: 538 AALVHA--------------ISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALV 583
L H I +D +T I G + A
Sbjct: 292 ELLSHESAKIQTPALRSVGNIVTGSDDQTQ------------------VIINCGALKAFR 333
Query: 584 KLLSSPVESVLFYAITTLHNL 604
LLSSP E++ A T+ N+
Sbjct: 334 SLLSSPKENIRKEACWTISNI 354
Score = 30.6 bits (69), Expect = 4.3
Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 47/210 (22%)
Query: 69 QDDADLATRAIPELIKLLNDEDQD--------------------DADLATRAIPELIKLL 108
D ++A+P L KL+ D + A L L++LL
Sbjct: 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294
Query: 109 NDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQL---SKKEASR---------- 155
+ E A R++ ++ +D+ QV+++ A+ + S KE R
Sbjct: 295 SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354
Query: 156 --------HAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK---- 203
A++++ ++ L+H +S S + + K A + N + I +
Sbjct: 355 TAGNTEQIQAVIDA-NLIPPLIHLLS-SAEYKIKKEACWAISNATSGGLNRPDIIRYLVS 412
Query: 204 SGGIPALVKLLSSPVESVLFYAITTLHNLL 233
G I L LL ++ A+ + N+L
Sbjct: 413 QGFIKPLCDLLDVVDNKIIEVALDAIENIL 442
>gnl|CDD|220523 pfam10020, DUF2262, Uncharacterized protein conserved in bacteria
(DUF2262). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 144
Score = 33.8 bits (78), Expect = 0.17
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 81 ELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND 132
E I L DED +D + +A+ L KL + ++ D + A +L++L ND
Sbjct: 27 EEISLSLDEDDNDEEKIEKALKTLKKLFKNIEEWDKKIKAFAAEKLLELAND 78
Score = 30.3 bits (69), Expect = 2.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 70 DDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND--EDQDDAD 117
+D + +A+ L KL + ++ D + A +L++L ND ED D+A+
Sbjct: 38 NDEEKIEKALKTLKKLFKNIEEWDKKIKAFAAEKLLELANDWREDDDEAE 87
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 31.8 bits (73), Expect = 0.92
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS-PQMVAAL 168
E++K L DED + + A +L KK + I N P++++ L
Sbjct: 67 EMLKCLVDEDPEIRALAKSFFSELLKKNPN--LIYNLFPEIISVL 109
Score = 31.8 bits (73), Expect = 0.92
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 497 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS-PQMVAAL 540
E++K L DED + + A +L KK + I N P++++ L
Sbjct: 67 EMLKCLVDEDPEIRALAKSFFSELLKKNPN--LIYNLFPEIISVL 109
>gnl|CDD|237136 PRK12557, PRK12557, H(2)-dependent methylenetetrahydromethanopterin
dehydrogenase-related protein; Provisional.
Length = 342
Score = 32.4 bits (74), Expect = 1.1
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 35 QGLLAIFKSGGIPALVKLLSKTLVTASSNNTLIL--QDDADLATRAIPELIKLLNDEDQ 91
Q + ++ ++ G+ L+K L+ L+ S+++ +L Q D D A + L + L E +
Sbjct: 242 QTMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQKDLDAALEILENLDEDLLKEIE 300
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 31.8 bits (73), Expect = 1.2
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 66 LILQDDADLATRAIPELIKLLNDEDQDDADLAT--RAIPE 103
IL DADLAT EL KL D+A RA
Sbjct: 85 YILFADADLATP-FEELEKLEEALKTSGYDIAIGSRAHLA 123
>gnl|CDD|99721 cd06399, PB1_P40, The PB1 domain is essential part of the p40
adaptor protein which plays an important role in
activating phagocyte NADPH oxidase during phagocytosis.
The PB1 domain is a modular domain mediating specific
protein-protein interaction which play a role in many
critical cell processes , such as osteoclastogenesis,
angiogenesis, early cardiovascular development and cell
polarity. A canonical PB1-PB1 interaction, which
involves heterodimerization of two PB1 domain, is
required for the formation of macromolecular signaling
complexes ensuring specificity and fidelity during
cellular signaling. The interaction between two PB1
domain depends on the type of PB1. There are three types
of PB1 domains: type I which contains an OPCA motif,
acidic aminoacid cluster, type II which contains a basic
cluster, and type I/II which contains both an OPCA motif
and a basic cluster. The PB1 domain of p40 represents a
type I PB1 domain which interacts with the PB1 domain of
oxidase activator p67 which belong to type II PB1
domain. Interactions of PB1 domains with other protein
domains have been described as noncanonical
PB1-interactions. The PB1 domain module is conserved in
amoebas, fungi, animals, and plants.
Length = 92
Score = 29.8 bits (67), Expect = 1.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 103 ELIKLLNDE-DQDDADLATR-AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156
+L++L E ++D L R A +LI+LL+DED A+MV Q + +
Sbjct: 32 DLLELTRREFQREDIALNYRDAEGDLIRLLSDED------VALMVRQSRGLPSQKR 81
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit
[Intracellular trafficking and secretion].
Length = 898
Score = 31.9 bits (72), Expect = 2.2
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 14/149 (9%)
Query: 459 AQPTAVQRLTEPSQML-KHAVVNLINYQDDA-DLATRAIPELIKLLNDEDQVVVSQAAMM 516
AQ V+ + M + A V L+ + ++A+ +L LN +S M
Sbjct: 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSW----LSDKFEM 279
Query: 517 VHQLSKKEASRHAIMN-SPQMVAALVHAIS---NSNDLETTKGAVGTLHNLSHHRQGLLA 572
V + + + N Q V V ++ S + A+ L+ L+ ++
Sbjct: 280 VFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339
Query: 573 IFKSGGIPALVKLLSSPVESVLFYAITTL 601
+ + L+S ++ YAITTL
Sbjct: 340 VCN----KEVESLISDENRTISTYAITTL 364
>gnl|CDD|240140 cd05007, SIS_Etherase, N-acetylmuramic acid 6-phosphate etherase.
Members of this family contain the SIS (Sugar ISomerase)
domain. The SIS domain is found in many phosphosugar
isomerases and phosphosugar binding proteins. The
bacterial cell wall sugar N-acetylmuramic acid carries a
unique D-lactyl ether substituent at the C3 position.
The etherase catalyzes the cleavage of the lactyl ether
bond of N-acetylmuramic acid 6-phosphate.
Length = 257
Score = 30.6 bits (70), Expect = 3.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 72 ADLATRAIPELIKLLNDEDQDDADLATRAIPELIKL 107
ADL + E+++LLN+ED+ A A+P++ +
Sbjct: 3 ADLDRLSTLEILRLLNEEDKKVAAAVEAALPQIARA 38
Score = 30.6 bits (70), Expect = 3.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 94 ADLATRAIPELIKLLNDEDQDDADLATRAIPELIKL 129
ADL + E+++LLN+ED+ A A+P++ +
Sbjct: 3 ADLDRLSTLEILRLLNEEDKKVAAAVEAALPQIARA 38
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5). This
family consists of apoptosis inhibitory protein 5 (API5)
sequences from several organisms. Apoptosis or
programmed cell death is a physiological form of cell
death that occurs in embryonic development and organ
formation. It is characterized by biochemical and
morphological changes such as DNA fragmentation and cell
volume shrinkage. API5 is an anti apoptosis gene located
in human chromosome 11, whose expression prevents the
programmed cell death that occurs upon the deprivation
of growth factors.
Length = 543
Score = 30.8 bits (69), Expect = 4.5
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 46 IPALVKLLSKTLVTASSNNTLILQDDADLATR--AIPELIKLLNDEDQDDADLATRAIPE 103
IP K +L T + + L DD D R AI L +D D ++
Sbjct: 46 IPRYFKFFP-SLATEAFDAQFDLCDDDDTGVRVQAIRGLPLFC----KDTPDATSKIGDV 100
Query: 104 LIKLLNDEDQDDADLATRAIPELIKL 129
L++LLN E+ + D +A+ LI+
Sbjct: 101 LVQLLNTEEPVERDAVHKALMSLIRQ 126
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 30.6 bits (70), Expect = 4.8
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 739 GLESLLQSLVQLLASQDINV------ITCAAGVTVCQVGGVEAL---VQTIVNAGDREEI 789
G+ L ++ + I+V IT GG EA+ + I + GD +
Sbjct: 67 GIPELREAFAKYYKKWGIDVEPDEILITN---------GGSEAILFAMMAICDPGDEILV 117
Query: 790 TEP 792
EP
Sbjct: 118 PEP 120
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 30.4 bits (69), Expect = 5.1
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 30/131 (22%)
Query: 138 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE--TTKGAVGTLHNLSHHR 195
VS+ A ++H R+ + N QM A L A + A+ H +
Sbjct: 218 VSKGATLLH--------RNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTV 269
Query: 196 QGLLAIFKSGG----------IPALVKLLS-SPVESVLFYAITTLHNLLLHQEG------ 238
GLL + ++GG IP +K L V F A+ TL+N LL+
Sbjct: 270 CGLLGM-RTGGRNILIPNPRDIPGFIKELKKYQVHI--FPAVNTLYNALLNNPDFDKLDF 326
Query: 239 SKMAVRLAGGL 249
SK+ V GG+
Sbjct: 327 SKLIVANGGGM 337
Score = 30.4 bits (69), Expect = 5.1
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 30/131 (22%)
Query: 510 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE--TTKGAVGTLHNLSHHR 567
VS+ A ++H R+ + N QM A L A + A+ H +
Sbjct: 218 VSKGATLLH--------RNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTV 269
Query: 568 QGLLAIFKSGG----------IPALVKLLS-SPVESVLFYAITTLHNLLLHQEG------ 610
GLL + ++GG IP +K L V F A+ TL+N LL+
Sbjct: 270 CGLLGM-RTGGRNILIPNPRDIPGFIKELKKYQVHI--FPAVNTLYNALLNNPDFDKLDF 326
Query: 611 SKMAVRLAGGL 621
SK+ V GG+
Sbjct: 327 SKLIVANGGGM 337
>gnl|CDD|218626 pfam05536, Neurochondrin, Neurochondrin. This family contains
several eukaryotic neurochondrin proteins. Neurochondrin
induces hydroxyapatite resorptive activity in bone
marrow cells resistant to bafilomycin A1, an inhibitor
of macrophage- and osteoclast-mediated resorption.
Expression of the gene is localised to chondrocyte,
osteoblast, and osteocyte in the bone and to the
hippocampus and Purkinje cell layer of cerebellum in the
brain.
Length = 542
Score = 30.5 bits (69), Expect = 5.8
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 153 ASRHAIMNSPQMVAA---LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPA 209
S + Q+V L+ + S+DL + L ++ +G A+ G +PA
Sbjct: 85 CSEPELARHSQVVNRIPTLLECLLKSSDLSMVEDCYECLSAIAATPRGAKALLALGAVPA 144
Query: 210 LVKLLSS---PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMV 253
L + S+ +E + + LLL SK L ++
Sbjct: 145 LCQAYSNGSFGLE-QALHLLL----LLLSALDSKSWTEKDLDLTAVL 186
Score = 30.5 bits (69), Expect = 5.8
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 525 ASRHAIMNSPQMVAA---LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPA 581
S + Q+V L+ + S+DL + L ++ +G A+ G +PA
Sbjct: 85 CSEPELARHSQVVNRIPTLLECLLKSSDLSMVEDCYECLSAIAATPRGAKALLALGAVPA 144
Query: 582 LVKLLSS---PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMV 625
L + S+ +E + + LLL SK L ++
Sbjct: 145 LCQAYSNGSFGLE-QALHLLL----LLLSALDSKSWTEKDLDLTAVL 186
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 30.5 bits (69), Expect = 6.3
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 112 DQDDADLATRAIPELIKLL-----NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVA 166
D L + L+ L N + Q Q A L+ A+ Q VA
Sbjct: 154 DALREALDAISFALLLNALSKWPDNTDCQTAAEQLADR---LASDSRLLQAM--DAQEVA 208
Query: 167 ALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS 215
++A+S D + A L GLL ++ + L+ LS
Sbjct: 209 NALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALS 257
>gnl|CDD|224494 COG1578, COG1578, Uncharacterized conserved protein [Function
unknown].
Length = 285
Score = 30.0 bits (68), Expect = 6.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 74 LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDD---ADLATRAIPELIKLL 130
L +A+ + +DED L +R + E +KLL++E + A T E+ K+L
Sbjct: 11 LLRQAVNAVKLATDDED-----LRSRIMSEALKLLSEEYGESAVPAIAGTLIHREVYKIL 65
Query: 131 NDED 134
+ED
Sbjct: 66 GNED 69
Score = 29.6 bits (67), Expect = 8.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 68 LQDDADLATRAIPELIKLLNDEDQDD---ADLATRAIPELIKLLNDED 112
DD DL +R + E +KLL++E + A T E+ K+L +ED
Sbjct: 22 ATDDEDLRSRIMSEALKLLSEEYGESAVPAIAGTLIHREVYKILGNED 69
>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase
subunit H (Vma13p); activation component of the
peripheral V1 complex of V-ATPase, a heteromultimeric
enzyme which uses ATP to actively transport protons
into organelles and extracellular compartments. The
topology is that of a superhelical spiral, in part the
geometry is similar to superhelices composed of
armadillo repeat motifs, as found in importins for
example.
Length = 429
Score = 30.1 bits (68), Expect = 6.9
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 82 LIKLLNDEDQDDADLATRAIPELI-KLLNDED------QDDADLATRAIPELIKLLNDED 134
+ LL+ D+DD R + LI +L ++D DDA L + LLN +D
Sbjct: 58 FVNLLSQIDKDDT---VRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD 114
Query: 135 QVVVSQAAMMVHQLSKKEASRHAIMNSPQM---VAALVHAISNSNDLETTKGAVGTLHNL 191
Q +V M L+K A M + L ++N + + + A L L
Sbjct: 115 QFIV---HMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQML 171
Query: 192 SHHRQGLLAIFKSGGIPALVKLLSS 216
+ A + G+P LVKLLS+
Sbjct: 172 LRVDEYRFAFVLADGVPTLVKLLSN 196
>gnl|CDD|173858 cd08493, PBP2_DppA_like, The substrate-binding component of an
ABC-type dipeptide import system contains the type 2
periplasmic binding fold. This family represents the
substrate-binding domain of an ATP-binding cassette
(ABC)-type dipeptide import system. The DppA binds
dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
Most of other periplasmic binding proteins are
comprised of only two globular subdomains corresponding
to domains I and III of the dipeptide/oligopeptide
binding proteins. The structural topology of these
domains is most similar to that of the type 2
periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 29.8 bits (68), Expect = 7.1
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 99 RAIPE----LIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA- 153
R IP+ L KLL E D+ P + +L D ++ + + V L A
Sbjct: 209 RIIPDNSVRLAKLLAGE----CDIVAYPNPSDLAILADAGLQLLERPGLNVGYL----AF 260
Query: 154 -SRHAIMNSPQMVAALVHAI 172
++ + P++ A+ HAI
Sbjct: 261 NTQKPPFDDPKVRQAIAHAI 280
>gnl|CDD|238911 cd01936, Ntn_CA, Cephalosporin acylase (CA) belongs to a family of
beta-lactam acylases that includes penicillin G acylase
(PGA) and aculeacin A acylase. PGA and CA are crucial
for the production of backbone chemicals like
6-aminopenicillanic acid and 7-aminocephalosporanic acid
(7-ACA), which can be used to synthesize semi-synthetic
penicillins and cephalosporins, respectively. While
both PGA and CA have a conserved Ntn (N-terminal
nucleophile) hydrolase fold and the structural
similarity at their active sites is very high, their
sequence similarity to other Ntn's is low.
Length = 469
Score = 29.9 bits (68), Expect = 7.4
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 66 LILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLA 119
+ L++ + EL L D LA R +P+L+ D ADLA
Sbjct: 342 MGLEELQPGGRFTLEELQALKFDNR---LYLAERVLPDLLAACAASDDAAADLA 392
>gnl|CDD|227291 COG4955, COG4955, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 343
Score = 29.8 bits (67), Expect = 7.7
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 476 HAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQ 535
V ++NYQ + LA R EL L ++ + +V+ LS I + +
Sbjct: 141 QWVKIVLNYQKEIQLAIRLENELHNLFK---KIELKGPEYLVYYLS----GYDEIGYTRE 193
Query: 536 MVA 538
+A
Sbjct: 194 QIA 196
>gnl|CDD|237797 PRK14713, PRK14713, multifunctional hydroxymethylpyrimidine
phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine
hydrolase; Provisional.
Length = 530
Score = 29.8 bits (67), Expect = 8.5
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 47 PALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIK 106
V +L +V A+S + L L++DA+ A R + ADL T +PEL
Sbjct: 124 RPPVVVLDPVMV-ATSGDRL-LEEDAEAALRELVPR-----------ADLITPNLPELAV 170
Query: 107 LLNDEDQDDADLA 119
LL + + A
Sbjct: 171 LLGEPPATTWEEA 183
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 25.9 bits (58), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKK 151
+P L++LLND D V AA + L++
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEV 30
Score = 25.9 bits (58), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKK 523
+P L++LLND D V AA + L++
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEV 30
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 29.7 bits (68), Expect = 8.6
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 468 TEPSQMLKHAVVNLINYQDDADLATRAIPELI---KLLNDEDQVVVSQAAMMVHQLSK 522
T PS+ L+ AV+ LI + + ++ + I LL D V+ Q + Q +
Sbjct: 49 TIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYER 106
>gnl|CDD|223835 COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier
protein) dehydratases [Lipid metabolism].
Length = 147
Score = 28.8 bits (65), Expect = 9.0
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 236 QEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT--DCLQILA 275
Q + L G K+ LG +N KF V D L++
Sbjct: 69 QAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEV 110
Score = 28.8 bits (65), Expect = 9.0
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 608 QEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT--DCLQILA 647
Q + L G K+ LG +N KF V D L++
Sbjct: 69 QAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEV 110
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP). This family
consists of several eukaryotic kinesin-associated (KAP)
proteins. Kinesins are intracellular multimeric
transport motor proteins that move cellular cargo on
microtubule tracks. It has been shown that the sea
urchin KRP85/95 holoenzyme associates with a KAP115
non-motor protein, forming a heterotrimeric complex in
vitro, called the Kinesin-II.
Length = 708
Score = 29.8 bits (67), Expect = 9.9
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 112 DQDDADLATRA--IPELIKLLN--DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAA 167
D A L ++ I LI+LLN ED V Q + +Q+ EA+R ++ Q A
Sbjct: 561 DDSCAALLAKSGIIDSLIELLNAKQEDDEFVCQIIYVFYQMLFHEATREVMIKETQAPAY 620
Query: 168 LVHAISNSN 176
L+ + + N
Sbjct: 621 LIDLMHDKN 629
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.376
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,788,273
Number of extensions: 4869428
Number of successful extensions: 4652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4574
Number of HSP's successfully gapped: 131
Length of query: 986
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 880
Effective length of database: 6,236,078
Effective search space: 5487748640
Effective search space used: 5487748640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.2 bits)