RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15604
(986 letters)
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 360 bits (925), Expect = e-111
Identities = 321/571 (56%), Positives = 373/571 (65%), Gaps = 55/571 (9%)
Query: 439 LMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPEL 498
MFPETL+EG++IPSTQFD+A PT VQRL EPSQMLKHAVVNLINYQDDA+LATRAIPEL
Sbjct: 96 AMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPEL 155
Query: 499 IKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVG 558
KLLNDEDQVVV++AA+MVHQLSKKEASRHAIM SPQMV+A+V + N+ND+ET + G
Sbjct: 156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSG 215
Query: 559 TLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLA 618
TLHNLSHHR+GLLAIFKSGGIPALV +L SPV+SVLF+AITTLHNLLLHQEG+KMAVRLA
Sbjct: 216 TLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275
Query: 619 GGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKL 678
GGLQKMV LL + NVKFLAI TDCLQILAYGNQESKLIILAS GP LV IMR+Y YEKL
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335
Query: 679 LWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVD 738
LW TSRVLKVLSVCSSNKPAIVEAGGMQAL +HL PSQRLVQNCLWTLRNLSDA TK +
Sbjct: 336 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 395
Query: 739 GLESLLQSLVQLLASQDINVITCAAGV-------------TVCQVGGVEALVQTIVNAGD 785
G+E LL +LVQLL S DINV+TCAAG+ VCQVGG+EALV+T++ AGD
Sbjct: 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455
Query: 786 REEITEPA---------DHSVNMWQQQNYLVDSGIHSGVN-TNAPSLTGKEEDMDGDQLM 835
RE+ITEPA H Q + G+ V + PS + G L+
Sbjct: 456 REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG--LI 513
Query: 836 FEMDQGFGQGFTQDQVTVCQVGGVEALVQ--------------------TIVNAGDREEI 875
+ + + + G + LVQ V EEI
Sbjct: 514 RNLALC-----PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568
Query: 876 TEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALC 935
E AL L + +R I V LL P + + G++ LA
Sbjct: 569 VEACTGALHILAR----DIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQD 623
Query: 936 QANHAPLREYGAIHLLVILLNRAFTDTQRVS 966
+ + GA L LL+ +
Sbjct: 624 KEAAEAIEAEGATAPLTELLHSRNEGVATYA 654
Score = 323 bits (829), Expect = 3e-97
Identities = 268/596 (44%), Positives = 325/596 (54%), Gaps = 55/596 (9%)
Query: 78 AIPELIKLLNDEDQDDADLATRAIPELIKLLNDED--QDDADLATRAIPELIKLLNDEDQ 135
+ + + LA + L + + QDDA+LATRAIPEL KLLNDEDQ
Sbjct: 106 MQIPSTQFDSAHPTNVQRLAEPSQ-MLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQ 164
Query: 136 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR 195
VVV++AA+MVHQLSKKEASRHAIM SPQMV+A+V + N+ND+ET + GTLHNLSHHR
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR 224
Query: 196 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL 255
+GLLAIFKSGGIPALV +L SPV+SVLF+AITTLHNLLLHQEG+KMAVRLAGGLQKMV L
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284
Query: 256 LGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLK 315
L + NVKFLAI TDCLQILAYGNQESKLIILAS GP LV IMR+Y YEKLLW TSRVLK
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 316 VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK----------- 364
VLSVCSSNKPAIVEAGGMQAL +HL PSQRLVQNCLWTLRNLSDA TK
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 404
Query: 365 VSLLFNEIENIQRVAAGLLCELA-QDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGV 423
V LL ++ N+ AAG+L L + + + G L + + +I +
Sbjct: 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464
Query: 424 HKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQM-LKHAVVNLI 482
+ ++ P V+ L PS L A V LI
Sbjct: 465 CALR-----HLTSRHQDAEMAQNAVRLHY------GLPVVVKLLHPPSHWPLIKATVGLI 513
Query: 483 NY------QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQM 536
AIP L++LL Q + +M Q E R
Sbjct: 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME------- 566
Query: 537 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 596
E + G LH L+ + I IP V+LL SP+E++
Sbjct: 567 --------------EIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRV 612
Query: 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE 652
A L L +E ++ G + LL N L ++ +
Sbjct: 613 AAGVLCELAQDKEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667
Score = 186 bits (474), Expect = 4e-49
Identities = 129/695 (18%), Positives = 228/695 (32%), Gaps = 118/695 (16%)
Query: 93 DADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE 152
D+ + + A L + +D D+ + + E + N Q A + Q +
Sbjct: 32 DSGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQ--EQVADIDGQYAMTR 89
Query: 153 ASRHAIMNSPQMV------AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL--AIFKS 204
A R P+ + + ++ +++ L + + A +
Sbjct: 90 AQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELAT 149
Query: 205 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFL 264
IP L KLL+ + V+ A +H L + +R +
Sbjct: 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA------------- 196
Query: 265 AIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 324
+VR M++ + + CTS L LS
Sbjct: 197 -----------------------------IVRTMQNTNDVETARCTSGTLHNLSHHREGL 227
Query: 325 PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------------VSLLFN 370
AI ++GG+ AL LG P ++ + + TL NL V+LL
Sbjct: 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287
Query: 371 EIENIQRVAAGLLCELAQ-DKEGAETIEAEGATAPLTDLLHSRN-EGVEILIQGVHKIFK 428
+ L LA ++E I A G L +++ + E + V K+
Sbjct: 288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347
Query: 429 IHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKH----AVVNLINY 484
+ N P +E G LT+PSQ L + NL +
Sbjct: 348 VCSSNK-------PAIVEAGGM----------QALGLHLTDPSQRLVQNCLWTLRNLSDA 390
Query: 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 544
+ + L++LL +D VV+ AA ++ L+ ++ + ALV +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Query: 545 SNSNDLETTKG-AVGTLHNLSHHRQG----LLAIFKSGGIPALVKLLSSPVESVLFYAIT 599
+ D E A+ L +L+ Q A+ G+P +VKLL P L A
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 600 TLHNLLLHQEGSKMAVRLAGGLQKMVLLL----------------------GRNNVKFLA 637
L L + +R G + ++V LL G + +
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Query: 638 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP 697
T L ILA + ++++I V+++ S E + + VL L+
Sbjct: 571 ACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAE 628
Query: 698 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSD 732
AI G L L ++ + L +S+
Sbjct: 629 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663
Score = 184 bits (467), Expect = 2e-48
Identities = 106/429 (24%), Positives = 190/429 (44%), Gaps = 27/429 (6%)
Query: 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASS 62
MV+A+V + N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALV +L + +
Sbjct: 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 63 N------NTLILQDDADLATR---AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQ 113
+ N L+ Q+ A +A R + +++ LLN + + T + L +++
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQES 310
Query: 114 DDADLATRAIPELIKLL-NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 172
LA+ L+ ++ + ++ + ++ LS +++ AI+ + + AL +
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHL 369
Query: 173 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
++ + + + TL NLS + G + LV+LL S +V+ A L NL
Sbjct: 370 TDPSQ-RLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNL 426
Query: 233 LLHQEGSKMAVRLAGGLQKMVLLLGRNNVKF--LAIVTDCLQILAYGNQESKLIILA--- 287
+ +KM V GG++ +V + R + L+ L +Q++++ A
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486
Query: 288 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 347
G +V+++ + L+ T +++ L++C +N + E G + L L Q
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546
Query: 348 VQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTD 407
+ + +E I G L LA+D I
Sbjct: 547 QRRTSMGGTQQQ------FVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQ 600
Query: 408 LLHSRNEGV 416
LL+S E +
Sbjct: 601 LLYSPIENI 609
Score = 117 bits (295), Expect = 3e-27
Identities = 74/457 (16%), Positives = 161/457 (35%), Gaps = 46/457 (10%)
Query: 494 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETT 553
IP L+ +L V+ A +H L + + + +V ++ +++
Sbjct: 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFL 293
Query: 554 KGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSK 612
L L++ Q L I SGG ALV ++ + L + + + +L +K
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353
Query: 613 MAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRS 672
A+ AGG+Q + L L + + +V +CL L + + LV+++ S
Sbjct: 354 PAIVEAGGMQALGLHLTDPSQR---LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 410
Query: 673 YDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQAL--AMHLGHPSQRLVQNCLWTLRN 729
D ++ C + +L L+ + NK + + GG++AL + + + + + LR+
Sbjct: 411 DD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469
Query: 730 LS------DAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNA 783
L+ + L L +V+LL + A + + A +
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 529
Query: 784 GDREEITEPADHSVNMWQQQNYLVD--SGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQG 841
G LV H +++ ++G ++ ++
Sbjct: 530 G----AIPR-------------LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
Query: 842 FGQ-----GFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMA 896
G +++ + + + VQ ++ + E I A L L + E A
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQ-LLYSPI-ENIQRVAAGVLCELAQ---DKEAA 627
Query: 897 QNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLA 933
+ + LL+ + + ++ ++
Sbjct: 628 EAIEAEG-ATAPLTELLHSRNE-GVATYAAAVLFRMS 662
Score = 67.4 bits (164), Expect = 1e-11
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 786 REEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGD---QLMFEMDQGF 842
+ +V+ WQQQ+YL DSGIHSG T APSL+GK D D Q+++E +QGF
Sbjct: 11 EMAMDPDRKAAVSHWQQQSYL-DSGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGF 69
Query: 843 GQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPA-VCALRHLTSRHVESEMAQNAVR 901
Q F Q+QV Q + A E + E + + + ++ + +
Sbjct: 70 NQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQ 129
Query: 902 L---------NY---------GIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQAN-HAPL 942
+ NY I + LLN + + KA ++ L+ +A+ HA +
Sbjct: 130 MLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAA-VMVHQLSKKEASRHAIM 188
Query: 943 REYGAIHLLVILLNR 957
R + +V +
Sbjct: 189 RSPQMVSAIVRTMQN 203
Score = 48.1 bits (114), Expect = 1e-05
Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 26/176 (14%)
Query: 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKT------ 56
M + E + G LH L+ + I IP V+LL
Sbjct: 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQR 611
Query: 57 --------LVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLL 108
L I + A L +LL+ ++ A A L ++
Sbjct: 612 VAAGVLCELAQDKEAAEAIEAEG------ATAPLTELLHSRNEGVATYAAAV---LFRMS 662
Query: 109 NDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQM 164
D+ Q D R EL L + + ++ + + + + P
Sbjct: 663 EDKPQ---DYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSY 715
Score = 46.2 bits (109), Expect = 5e-05
Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 16/192 (8%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSN 63
+ V + + + + A G L L+ ++ AI G L +LL
Sbjct: 595 IPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS-------- 645
Query: 64 NTLILQDDADLATRAIPELIKLLNDEDQD-DADLATRAIPELIKLLNDEDQDDADLATRA 122
+ +AT A L ++ D+ QD L+ L + + DL
Sbjct: 646 ------RNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDI 699
Query: 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTK 182
+ L +D + + + DL T+
Sbjct: 700 GAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMAGHHPGPDYPVDGLPDLGHTQ 759
Query: 183 GAVGTLHNLSHH 194
+ L +
Sbjct: 760 DLIDGLPPGDSN 771
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 319 bits (819), Expect = 2e-98
Identities = 292/522 (55%), Positives = 336/522 (64%), Gaps = 55/522 (10%)
Query: 477 AVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQM 536
AVVNLINYQDDA+LATRAIPEL KLLNDEDQVVV++AA+MVHQLSKKEASRHAIM SPQM
Sbjct: 1 AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 60
Query: 537 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 596
V+A+V + N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALVK+L SPV+SVLFY
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY 120
Query: 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLI 656
AITTLHNLLLHQEG+KMAVRLAGGLQKMV LL + NVKFLAI TDCLQILAYGNQESKLI
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180
Query: 657 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPS 716
ILAS GP LV IMR+Y YEKLLW TSRVLKVLSVCSSNKPAIVEAGGMQAL +HL PS
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 717 QRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGV----------- 765
QRLVQNCLWTLRNLSDA TK +G+E LL +LVQLL S DINV+TCAAG+
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300
Query: 766 --TVCQVGGVEALVQTIVNAGDREEITEPA---------DHSVNMWQQQNYLVDSGIHSG 814
VCQVGG+EALV+T++ AGDRE+ITEPA H Q + G+
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360
Query: 815 VN-TNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQ--------- 864
V + PS + G + + + + G + LVQ
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCP-------ANHAPLREQGAIPRLVQLLVRAHQDT 413
Query: 865 -----------TIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLL 913
V EEI E AL L + +R I V LL
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL----ARDVHNRIVIRGLNTIPLFVQLL 469
Query: 914 NPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILL 955
P + + G++ LA + + GA L LL
Sbjct: 470 YSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 510
Score = 314 bits (805), Expect = 2e-96
Identities = 270/555 (48%), Positives = 320/555 (57%), Gaps = 52/555 (9%)
Query: 112 DQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHA 171
QDDA+LATRAIPEL KLLNDEDQVVV++AA+MVHQLSKKEASRHAIM SPQMV+A+V
Sbjct: 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67
Query: 172 ISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHN 231
+ N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALVK+L SPV+SVLFYAITTLHN
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 232 LLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGP 291
LLLHQEG+KMAVRLAGGLQKMV LL + NVKFLAI TDCLQILAYGNQESKLIILAS GP
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 292 VELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNC 351
LV IMR+Y YEKLLW TSRVLKVLSVCSSNKPAIVEAGGMQAL +HL PSQRLVQNC
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 352 LWTLRNLSDAGTK-----------VSLLFNEIENIQRVAAGLLCELA-QDKEGAETIEAE 399
LWTLRNLSDA TK V LL ++ N+ AAG+L L + + +
Sbjct: 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 400 GATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTA 459
G L + + +I + + ++
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALR-----HLTSRHQEAEMAQNAVRLHY------G 356
Query: 460 QPTAVQRLTEPSQM-LKHAVVNLIN--YQDDADLAT----RAIPELIKLLNDEDQVVVSQ 512
P V+ L PS L A V LI A+ A AIP L++LL Q +
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416
Query: 513 AAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLA 572
+M Q E R E +G G LH L+ +
Sbjct: 417 TSMGGTQQQFVEGVRME---------------------EIVEGCTGALHILARDVHNRIV 455
Query: 573 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 632
I IP V+LL SP+E++ A L L +E ++ G + LL N
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA-EGATAPLTELLHSRN 514
Query: 633 VKFLAIVTDCLQILA 647
L ++
Sbjct: 515 EGVATYAAAVLFRMS 529
Score = 180 bits (458), Expect = 1e-48
Identities = 108/429 (25%), Positives = 189/429 (44%), Gaps = 27/429 (6%)
Query: 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASS 62
MV+A+V + N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALVK+L + +
Sbjct: 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 63 N------NTLILQDDADLATR---AIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQ 113
N L+ Q+ A +A R + +++ LLN + + T + L +++
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQES 177
Query: 114 DDADLATRAIPELIKLL-NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 172
LA+ L+ ++ + ++ + ++ LS +++ AI+ + + AL +
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHL 236
Query: 173 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
++ + + + TL NLS + G + LV+LL S +V+ A L NL
Sbjct: 237 TDPSQ-RLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNL 293
Query: 233 LLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDC--LQILAYGNQESKLIILA--- 287
+ +KM V GG++ +V + R + L+ L +QE+++ A
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353
Query: 288 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 347
G +V+++ + L+ T +++ L++C +N + E G + L L Q
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413
Query: 348 VQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTD 407
+ +E I G L LA+D I
Sbjct: 414 QRRTSMGGTQQQFVEG------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467
Query: 408 LLHSRNEGV 416
LL+S E +
Sbjct: 468 LLYSPIENI 476
Score = 172 bits (438), Expect = 6e-46
Identities = 112/577 (19%), Positives = 201/577 (34%), Gaps = 82/577 (14%)
Query: 188 LHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG 247
+ NL +++ A + IP L KLL+ + V+ A +H L + +R
Sbjct: 2 VVNLINYQDD--AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 59
Query: 248 GLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKL 306
+ +V + N+V+ L L+ ++E L I S G LV+++ S L
Sbjct: 60 MVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 307 LWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVS 366
+ + + +L K A+ AGG+Q + L + + + L+ L+
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA------- 171
Query: 367 LLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRN-EGVEILIQGVHK 425
++E I A G L +++ + E + V K
Sbjct: 172 --------------------YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 426 IFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKH----AVVNL 481
+ + N P +E G LT+PSQ L + NL
Sbjct: 212 VLSVCSSNK-------PAIVEAGGM----------QALGLHLTDPSQRLVQNCLWTLRNL 254
Query: 482 INYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV 541
+ + + L++LL +D VV+ AA ++ L+ ++ + ALV
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314
Query: 542 HAISNSNDLETTKG-AVGTLHNLSHH----RQGLLAIFKSGGIPALVKLLSSPVESVLFY 596
+ + D E A+ L +L+ A+ G+P +VKLL P L
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374
Query: 597 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLL----------------------GRNNVK 634
A L L + +R G + ++V LL G +
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434
Query: 635 FLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS 694
+ T L ILA + ++++I V+++ S E + + VL L+
Sbjct: 435 IVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKE 492
Query: 695 NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731
AI G L L ++ + L +S
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 131 bits (332), Expect = 3e-32
Identities = 93/644 (14%), Positives = 190/644 (29%), Gaps = 142/644 (22%)
Query: 316 VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK----------- 364
V+++ + A + + L L Q +V + LS
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 365 ---VSLLFNEIE-NIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILI 420
V + N + R AG L L+ +EG I G L +L S
Sbjct: 62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV------- 114
Query: 421 QGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVN 480
S F T + L + K AV
Sbjct: 115 -------------------------------DSVLFYAI--TTLHNLLLHQEGAKMAVRL 141
Query: 481 LINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLS-KKEASRHAIMNSPQMVAA 539
+ +++ LLN + ++ + L+ + S+ I+ S A
Sbjct: 142 A-----------GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQA 189
Query: 540 LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAIT 599
LV+ + + L LS AI ++GG+ AL L+ P + ++ +
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249
Query: 600 TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 659
TL NL + + + G L +V LLG +++ + L L N +
Sbjct: 250 TLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK------- 299
Query: 660 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQAL--AMHLGHPSQ 717
NK + + GG++AL + +
Sbjct: 300 -----------------------------------NKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 718 RLVQNCLWTLRNLSDAGTKVD------GLESLLQSLVQLLASQDINVITCAAGVTVCQVG 771
+ + + LR+L+ + + L L +V+LL + A + +
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384
Query: 772 GVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDG 831
A + G + + + Q++ + + E +
Sbjct: 385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRR------------TSMGGTQQQFVEGVRM 432
Query: 832 DQLMFEMDQGFGQ--GFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSR 889
++++ +++ + + + VQ ++ + E I A L L
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ-LLYSPI-ENIQRVAAGVLCELAQ- 489
Query: 890 HVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLA 933
+ E A+ + LL+ + + ++ ++
Sbjct: 490 --DKEAAEAIEAEG-ATAPLTELLHSRNE-GVATYAAAVLFRMS 529
Score = 94.5 bits (235), Expect = 3e-20
Identities = 74/416 (17%), Positives = 133/416 (31%), Gaps = 114/416 (27%)
Query: 560 LHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG 619
+ NL +++ A + IP L KLL+ + V+ A +H L + +R
Sbjct: 2 VVNLINYQDD--AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 59
Query: 620 GLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLL 679
+ +VR M++ + +
Sbjct: 60 MVSA------------------------------------------IVRTMQNTNDVETA 77
Query: 680 WCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS---DAGTK 736
CT+ L LS AI ++GG+ AL LG P ++ + TL NL +
Sbjct: 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137
Query: 737 VDGLESLLQSLVQLLASQDINVITCAAG-------------VTVCQVGGVEALVQTIVNA 783
L LQ +V LL ++ + + + GG +ALV I+
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMRT 196
Query: 784 GDREEITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFG 843
E++ S V
Sbjct: 197 YTYEKLLWTT-------------------SRVLKVL------------------------ 213
Query: 844 QGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLN 903
+ ++ + + GG++AL + + + + + + LR+L S+ A +
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNL------SDAATKQEGME 265
Query: 904 YGIQTIVNLLNPPSRWPLVKAVIGLIRNLALC-QANHAPLREYGAIHLLVILLNRA 958
+ T+V LL +V G++ NL N + + G I LV + RA
Sbjct: 266 GLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320
Score = 69.4 bits (170), Expect = 3e-12
Identities = 40/229 (17%), Positives = 62/229 (27%), Gaps = 57/229 (24%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSN 63
+ +V + + K VG + NL+ + + G IP LV+LL +
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA------- 409
Query: 64 NTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAI 123
D R + E ++ L L D I
Sbjct: 410 -------HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKG 183
P ++LL + + AA
Sbjct: 463 PLFVQLLYSPIENIQRVAA----------------------------------------- 481
Query: 184 AVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
G L L+ ++ AI G L +LL S E V YA L +
Sbjct: 482 --GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 52.5 bits (126), Expect = 5e-07
Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 850 QVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTI 909
++ V GG++ +V ++N + + L+ L + ES + + + G Q +
Sbjct: 136 KMAVRLAGGLQKMVA-LLNKTN-VKFLAITTDCLQILAYGNQES---KLIILASGGPQAL 190
Query: 910 VNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLNRAFTDTQR 964
VN++ + L+ +++ L++C +N + E G + L + L +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245
Score = 49.4 bits (118), Expect = 5e-06
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 5/110 (4%)
Query: 855 QVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLN 914
+ L + ++N D + + A + L+ + +R + IV +
Sbjct: 15 ATRAIPELTK-LLNDED-QVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQ 69
Query: 915 PPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLNRAFTDTQR 964
+ + G + NL+ + + + G I LV +L
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Score = 43.6 bits (103), Expect = 3e-04
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 853 VCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNL 912
+ V A+V+T+ N D E L +L+ E + GI +V +
Sbjct: 55 MRSPQMVSAIVRTMQNTND-VETARCTAGTLHNLSH---HREGLLAIFKSG-GIPALVKM 109
Query: 913 LNPPSRWPLVKAVIGLIRNLALCQANHAPL-REYGAIHLLVILLNRAFTDTQRVS 966
L P ++ I + NL L Q R G + +V LLN+ ++
Sbjct: 110 LGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 319 bits (820), Expect = 2e-97
Identities = 274/581 (47%), Positives = 326/581 (56%), Gaps = 54/581 (9%)
Query: 107 LLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVA 166
L+N QDDA+LATRAIPEL KLLNDEDQVVV++AA+MVHQLSKKEASRHAIM SPQMV+
Sbjct: 2 LINY--QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 59
Query: 167 ALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAI 226
A+V + N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALVK+L SPV+SVLFYAI
Sbjct: 60 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
Query: 227 TTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIIL 286
TTLHNLLLHQEG+KMAVRLAGGLQKMV LL + NVKFLAI TDCLQILAYGNQESKLIIL
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179
Query: 287 ASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQR 346
AS GP LV IMR+Y YEKLLW TSRVLKVLSVCSSNKPAIVEAGGMQAL +HL PSQR
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 239
Query: 347 LVQNCLWTLRNLSDAGTK-----------VSLLFNEIENIQRVAAGLLCELA-QDKEGAE 394
LVQNCLWTLRNLSDA TK V LL ++ N+ AAG+L L + +
Sbjct: 240 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 395 TIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPST 454
+ G L + + +I + + ++
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALR-----HLTSRHQEAEMAQNAVRL---- 350
Query: 455 QFDTAQPTAVQRLTEPSQM-LKHAVVNLINY------QDDADLATRAIPELIKLLNDEDQ 507
P V+ L PS L A V LI AIP L++LL Q
Sbjct: 351 --HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408
Query: 508 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR 567
+ +M Q E R E +G G LH L+
Sbjct: 409 DTQRRTSMGGTQQQFVEGVRME---------------------EIVEGCTGALHILARDV 447
Query: 568 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLL 627
+ I IP V+LL SP+E++ A L L +E A+ G + L
Sbjct: 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTEL 506
Query: 628 LGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVR 668
L N L ++ + L+ + L R
Sbjct: 507 LHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547
Score = 318 bits (815), Expect = 1e-96
Identities = 287/519 (55%), Positives = 330/519 (63%), Gaps = 55/519 (10%)
Query: 480 NLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAA 539
NLINYQDDA+LATRAIPEL KLLNDEDQVVV++AA+MVHQLSKKEASRHAIM SPQMV+A
Sbjct: 1 NLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 60
Query: 540 LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAIT 599
+V + N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALVK+L SPV+SVLFYAIT
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 120
Query: 600 TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 659
TLHNLLLHQEG+KMAVRLAGGLQKMV LL + NVKFLAI TDCLQILAYGNQESKLIILA
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180
Query: 660 SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL 719
S GP LV IMR+Y YEKLLW TSRVLKVLSVCSSNKPAIVEAGGMQAL +HL PSQRL
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 240
Query: 720 VQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGV-------------T 766
VQNCLWTLRNLSDA TK +G+E LL +LVQLL S DINV+TCAAG+
Sbjct: 241 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 300
Query: 767 VCQVGGVEALVQTIVNAGDREEITEPA--------DHSVNMWQQQNYLVDSGIHSGVNTN 818
VCQVGG+EALV+T++ AGDRE+ITEPA QN +
Sbjct: 301 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG------- 353
Query: 819 APSLTGKEEDMDGDQLMFEMDQGFGQ--GFTQDQVTVCQVGGVEALVQTIVNAGDR---- 872
P + L+ + + + G + LVQ +V A
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413
Query: 873 ----------------EEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPP 916
EEI E AL L + +R I V LL P
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILAR----DVHNRIVIRGLNTIPLFVQLLYSP 469
Query: 917 SRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILL 955
+ + G++ LA + + GA L LL
Sbjct: 470 IE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507
Score = 177 bits (450), Expect = 1e-46
Identities = 120/656 (18%), Positives = 209/656 (31%), Gaps = 106/656 (16%)
Query: 200 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN 259
A + IP L KLL+ + V+ A +H L + +R +
Sbjct: 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-------- 60
Query: 260 NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 319
+VR M++ + + CT+ L LS
Sbjct: 61 ----------------------------------IVRTMQNTNDVETARCTAGTLHNLSH 86
Query: 320 CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS--DAGTK------------V 365
AI ++GG+ AL LG P ++ + TL NL G K V
Sbjct: 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 146
Query: 366 SLLFNEIENIQRVAAGLLCELAQ-DKEGAETIEAEGATAPLTDLLHSRN-EGVEILIQGV 423
+LL + L LA ++E I A G L +++ + E + V
Sbjct: 147 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 206
Query: 424 HKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKH----AVV 479
K+ + N P +E G LT+PSQ L +
Sbjct: 207 LKVLSVCSSNK-------PAIVEAGGM----------QALGLHLTDPSQRLVQNCLWTLR 249
Query: 480 NLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAA 539
NL + + + L++LL +D VV+ AA ++ L+ ++ + A
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 540 LVHAISNSNDLETTKG-AVGTLHNLSHHRQGL----LAIFKSGGIPALVKLLSSPVESVL 594
LV + + D E A+ L +L+ Q A+ G+P +VKLL P L
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369
Query: 595 FYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-------------------NNVKF 635
A L L + +R G + ++V LL R V+
Sbjct: 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429
Query: 636 LAIVTDCLQILAY--GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 693
IV C L + ++++I V+++ S E + + VL L+
Sbjct: 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDK 488
Query: 694 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLAS 753
AI G L L ++ + L +S+ + ++ L +
Sbjct: 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT 548
Query: 754 QDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDS 809
+ + A G + + ++ M + +
Sbjct: 549 EPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGG 604
Score = 177 bits (450), Expect = 1e-46
Identities = 110/432 (25%), Positives = 189/432 (43%), Gaps = 31/432 (7%)
Query: 2 EMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTAS 61
+MV+A+V + N+ND+ET + GTLHNLSHHR+GLLAIFKSGGIPALVK+L + +
Sbjct: 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 115
Query: 62 SN------NTLILQDDADLATR---AIPELIKLLNDEDQDDADLATRAIPELIKLLNDED 112
N L+ Q+ A +A R + +++ LLN + + T + L +++
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQE 173
Query: 113 QDDADLATRAIPELIKLL-NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHA 171
LA+ L+ ++ + ++ + ++ LS +++ AI+ + + AL
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLH 232
Query: 172 ISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHN 231
+ + + TL NLS G + LV+LL S +V+ A L N
Sbjct: 233 L-TDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 232 LLLHQEGSKMAVRLAGGLQKMVLLL----GRNNVKFLAIVTDCLQILAYGNQESKLIILA 287
L + +KM V GG++ +V + R ++ AI L+ L +QE+++ A
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA--LRHLTSRHQEAEMAQNA 347
Query: 288 ---SQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPS 344
G +V+++ + L+ T +++ L++C +N + E G + L L
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 407
Query: 345 QRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAP 404
Q + +E I G L LA+D I
Sbjct: 408 QDTQRRTSMGGTQQQFVEG------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 461
Query: 405 LTDLLHSRNEGV 416
LL+S E +
Sbjct: 462 FVQLLYSPIENI 473
Score = 96.5 bits (240), Expect = 1e-20
Identities = 72/404 (17%), Positives = 127/404 (31%), Gaps = 112/404 (27%)
Query: 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN 631
A + IP L KLL+ + V+ A +H L + +R +
Sbjct: 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-------- 60
Query: 632 NVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV 691
+VR M++ + + CT+ L LS
Sbjct: 61 ----------------------------------IVRTMQNTNDVETARCTAGTLHNLSH 86
Query: 692 CSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS---DAGTKVDGLESLLQSLV 748
AI ++GG+ AL LG P ++ + TL NL + L LQ +V
Sbjct: 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 146
Query: 749 QLLASQDINVITCAAG-------------VTVCQVGGVEALVQTIVNAGDREEITEPADH 795
LL ++ + + + GG +ALV I+ E++
Sbjct: 147 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMRTYTYEKLLWTT-- 203
Query: 796 SVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQ 855
S V + ++ + +
Sbjct: 204 -----------------SRVLKVL------------------------SVCSSNKPAIVE 222
Query: 856 VGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNP 915
GG++AL + + + + + + LR+L S+ A + + T+V LL
Sbjct: 223 AGGMQALGLHLTD--PSQRLVQNCLWTLRNL------SDAATKQEGMEGLLGTLVQLLGS 274
Query: 916 PSRWPLVKAVIGLIRNLALC-QANHAPLREYGAIHLLVILLNRA 958
+V G++ NL N + + G I LV + RA
Sbjct: 275 DD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317
Score = 72.7 bits (178), Expect = 3e-13
Identities = 43/251 (17%), Positives = 68/251 (27%), Gaps = 58/251 (23%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSN 63
+ +V + + K VG + NL+ + + G IP LV+LL +
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA------- 406
Query: 64 NTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAI 123
D R + E ++ L L D I
Sbjct: 407 -------HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 459
Query: 124 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKG 183
P ++LL + + AA
Sbjct: 460 PLFVQLLYSPIENIQRVAA----------------------------------------- 478
Query: 184 AVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAV 243
G L L+ ++ AI G L +LL S E V YA L + +
Sbjct: 479 --GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP-QDYKK 535
Query: 244 RLAGGLQKMVL 254
RL+ L +
Sbjct: 536 RLSVELTSSLF 546
Score = 49.2 bits (117), Expect = 7e-06
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 6/117 (5%)
Query: 848 QDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQ 907
QD + + L + ++N D + + A + L+ + +R +
Sbjct: 6 QDDAEL-ATRAIPELTK-LLNDED-QVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVS 59
Query: 908 TIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLNRAFTDTQR 964
IV + + + G + NL+ + + + G I LV +L
Sbjct: 60 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Score = 45.7 bits (108), Expect = 6e-05
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 853 VCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNL 912
+ V A+V+T+ N D E L +L+ E + GI +V +
Sbjct: 52 MRSPQMVSAIVRTMQNTND-VETARCTAGTLHNLSH---HREGLLAIFKSG-GIPALVKM 106
Query: 913 LNPPSRWPLVKAVIGLIRNLALCQANHAPL-REYGAIHLLVILLNRAFTDTQRVS 966
L P ++ I + NL L Q R G + +V LLN+ ++
Sbjct: 107 LGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 190 bits (484), Expect = 1e-52
Identities = 59/305 (19%), Positives = 114/305 (37%), Gaps = 7/305 (2%)
Query: 487 DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR--HAIMNSPQMVAALVHAI 544
+ ++I+++ + A +L KE + ++++P +VA V +
Sbjct: 14 EMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL 73
Query: 545 SNSNDLETTKGAVGTLHNLSHHR-QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHN 603
+ + L N++ + ++G +P ++LLSS E V A+ L N
Sbjct: 74 KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGN 133
Query: 604 LLLHQEGSKMAVRLAGGLQKMVLLLGRNN-VKFLAIVTDCLQILAYGNQESKLIILASQG 662
+ + V L ++ L + N + L L G S
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
Query: 663 PVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQN 722
L ++ D + L + + + A+++AG + L L H ++V
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253
Query: 723 CLWTLRNL---SDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQT 779
L + N+ D T+V S LQSL+ LL+S ++ A G A +QT
Sbjct: 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313
Query: 780 IVNAG 784
+++A
Sbjct: 314 VIDAN 318
Score = 183 bits (466), Expect = 2e-50
Identities = 53/327 (16%), Positives = 114/327 (34%), Gaps = 19/327 (5%)
Query: 109 NDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR--HAIMNSPQMVA 166
+ + ++I+++ + A +L KE + ++++P +VA
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 167 ALVHAISNSNDLETTKGAVGTLHNLSHHR-QGLLAIFKSGGIPALVKLLSSPVESVLFYA 225
V + + + L N++ + ++G +P ++LLSS E V A
Sbjct: 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Query: 226 ITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN-VKFLAIVTDCLQILAYGNQESKLI 284
+ L N+ + V L ++ L + N + L L G
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187
Query: 285 ILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPS 344
S L ++ D + L + + + A+++AG + L L H
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247
Query: 345 QRLVQNCLWTLRNL---SDAGTK-----------VSLLFNEIENIQRVAAGLLCEL-AQD 389
++V L + N+ D T+ + LL + E+I++ A + + A +
Sbjct: 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307
Query: 390 KEGAETIEAEGATAPLTDLLHSRNEGV 416
+ +T+ L +L +
Sbjct: 308 RAQIQTVIDANIFPALISILQTAEFRT 334
Score = 128 bits (322), Expect = 2e-31
Identities = 72/435 (16%), Positives = 148/435 (34%), Gaps = 46/435 (10%)
Query: 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL---LAIFKSGGIPALVKLLSKT--- 56
+ + ++ I S E A L I G + V+ L +
Sbjct: 21 ITSDMIEMI-FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79
Query: 57 ------------LVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPEL 104
+ + +S T I+ A+P I+LL+ E +D + A A+ +
Sbjct: 80 TLQFESAWVLTNIASGNSLQTRIVIQAG-----AVPIFIELLSSEFEDVQEQAVWALGNI 134
Query: 105 IKLLNDEDQDDADLATRAIPELIKLLNDEDQV-VVSQAAMMVHQLSKKEASRHAIMNSPQ 163
+ D L +P L++L + ++++ + A + L + ++
Sbjct: 135 AG--DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192
Query: 164 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSSPVESVL 222
+ L + +D + A L LS + A+ +G LV+LL V+
Sbjct: 193 CLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251
Query: 223 FYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESK 282
A+ + N++ + + LQ ++ LL + + GN+
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311
Query: 283 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLG 341
++ + L+ I+++ ++ + S S+ +VE G ++ L L
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT 371
Query: 342 HPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGA 401
++VQ L L N+ G + + N C L ++ G + IE
Sbjct: 372 VMDSKIVQVALNGLENILRLGEQEAKRNGTGINP-------YCALIEEAYGLDKIEF--- 421
Query: 402 TAPLTDLLHSRNEGV 416
L N+ +
Sbjct: 422 ------LQSHENQEI 430
Score = 111 bits (280), Expect = 5e-26
Identities = 66/458 (14%), Positives = 149/458 (32%), Gaps = 49/458 (10%)
Query: 335 ALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEG-- 392
A+ H + + ++ + ++F++ Q A +L +
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDM------IEMIFSKSPEQQLSATQKFRKLLSKEPNPP 55
Query: 393 -AETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEI 451
E I G A + L R E + + + I N + ++
Sbjct: 56 IDEVISTPGVVARFVEFL-KRKENCTLQFESAWVLTNIASGNSLQTRIVIQ--------- 105
Query: 452 PSTQFDTAQPTAVQRLTEPSQMLKHAVV----NLINYQD---DADLATRAIPELIKLLND 504
A P ++ L+ + ++ V N+ D L +P L++L +
Sbjct: 106 -----AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160
Query: 505 EDQV-VVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL 563
++++ + A + L + ++ + L + +D + A L L
Sbjct: 161 QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL-FVSDTDVLADACWALSYL 219
Query: 564 SHHRQGLL-AIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQ 622
S + A+ +G LV+LL V+ A+ + N++ + + LQ
Sbjct: 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279
Query: 623 KMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCT 682
++ LL + + GN+ ++ + L+ I+++ ++
Sbjct: 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339
Query: 683 SRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLE 741
+ S S+ +VE G ++ L L ++VQ L L N+ G +
Sbjct: 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
Query: 742 SL--------------LQSLVQLLASQDINVITCAAGV 765
L + L + ++ + A +
Sbjct: 400 GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Score = 99.6 bits (248), Expect = 4e-22
Identities = 69/502 (13%), Positives = 144/502 (28%), Gaps = 112/502 (22%)
Query: 186 GTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL 245
G + + +++++ S A LL +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEP-------- 52
Query: 246 AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 305
N +I V ++ +
Sbjct: 53 --------------------------------NPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 306 LLWCTSRVLKVLSVCSSNKP-AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK 364
L + ++ VL ++ +S + +++AG + L + + + +W L N++ T
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 365 --------------VSLLFNEIE-NIQRVAAGLLCELAQDKEGAETIEA-EGATAPLTDL 408
+ L + + R A L L + K L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 409 LHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLT 468
L + V D A+ L+
Sbjct: 201 LFVSDTDV--------------------------------------LADAC--WALSYLS 220
Query: 469 EPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 528
+ AV++ L++LL D VVS A V + + +
Sbjct: 221 DGPNDKIQAVID-----------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269
Query: 529 AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLS 587
++ + + +L+H +S+ + K A T+ N+ + +R + + + PAL+ +L
Sbjct: 270 QVILNCSALQSLLHLLSSPKE-SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328
Query: 588 SPVESVLFYAITTLHNLLLHQ-EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCL-QI 645
+ A + N + G ++ + LL + K + + + L I
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388
Query: 646 LAYGNQESKLIILASQGPVELV 667
L G QE+K L+
Sbjct: 389 LRLGEQEAKRNGTGINPYCALI 410
Score = 82.6 bits (204), Expect = 1e-16
Identities = 70/445 (15%), Positives = 133/445 (29%), Gaps = 46/445 (10%)
Query: 314 LKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------- 364
+ +N + + S + R L
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 365 -------VSLL-FNEIENIQRVAAGLLCELAQ-DKEGAETIEAEGATAPLTDLLHSRNEG 415
V L E +Q +A +L +A + + GA +LL S E
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE- 121
Query: 416 VEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLK 475
++ Q V + I + + L+ I P Q + Q +
Sbjct: 122 -DVQEQAVWALGNIAGDSTMCRDYV----LDCNILPPLLQLFSKQNRLTMT-----RNAV 171
Query: 476 HAVVNLI---NYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMN 532
A+ NL + + + + L LL D V++ A + LS + +
Sbjct: 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 533 SPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR-QGLLAIFKSGGIPALVKLLSSPVE 591
+ LV + ND + A+ + N+ I + +L+ LLSSP E
Sbjct: 232 DAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290
Query: 592 SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651
S+ A T+ N+ V A ++ +L + + G
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350
Query: 652 ESKLIILASQGPVE-LVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPA-----------I 699
++ L G ++ L ++ D + + + + +L + I
Sbjct: 351 AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALI 410
Query: 700 VEAGGMQALAMHLGHPSQRLVQNCL 724
EA G+ + H +Q + Q
Sbjct: 411 EEAYGLDKIEFLQSHENQEIYQKAF 435
Score = 77.2 bits (190), Expect = 6e-15
Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 7/234 (2%)
Query: 558 GTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGS--KMAV 615
G + + +++++ S A LL + +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 616 RLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD 674
G + + V L R N L +A GN I++ + + ++ S
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 675 YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ-RLVQNCLWTLRNLS-- 731
+ + + + + +++ + L ++ + +N +W L NL
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 732 -DAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAG 784
+ + L L LL D +V+ A G +Q +++AG
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG 234
Score = 44.1 bits (104), Expect = 2e-04
Identities = 21/114 (18%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 844 QGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLN 903
G + V Q G V ++ + + + E++ E AV AL ++ +S M ++ V
Sbjct: 94 SGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIA---GDSTMCRDYVLDC 148
Query: 904 YGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPL-REYGAIHLLVILLN 956
+ ++ L + +R + + + + NL ++ + +++L LL
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Score = 38.7 bits (90), Expect = 0.008
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 4/125 (3%)
Query: 841 GFGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAV 900
GF + + +++ I + E+ A R L S+ + +
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMI-FSKSPEQQLS-ATQKFRKLLSKE-PNPPIDEVI 60
Query: 901 RLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHA-PLREYGAIHLLVILLNRAF 959
+ V L L ++ N+A + + + GA+ + + LL+ F
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 960 TDTQR 964
D Q
Sbjct: 121 EDVQE 125
Score = 35.6 bits (82), Expect = 0.071
Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 857 GGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPP 916
G V V+ + + + + L ++ S S + ++ + + LL+
Sbjct: 64 GVVARFVEFLKR-KENCTLQFESAWVLTNIASG--NSLQTRIVIQAG-AVPIFIELLSSE 119
Query: 917 SRWPLVKAVIGLIRNLALCQANHAPL-REYGAIHLLVILLNR 957
+ + + + N+A + + L+ L ++
Sbjct: 120 FE-DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160
Score = 29.1 bits (65), Expect = 7.6
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 857 GGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPP 916
+ L+Q + + +R +T AV AL +L +++ + + LL
Sbjct: 149 NILPPLLQ-LFSKQNRLTMTRNAVWALSNLC---RGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 917 SRWPLVKAVIGLIRNLALCQANHAP-LREYGAIHLLVILLN 956
++ + L+ + + + G LV LL
Sbjct: 205 DT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 181 bits (461), Expect = 4e-49
Identities = 59/330 (17%), Positives = 115/330 (34%), Gaps = 10/330 (3%)
Query: 465 QRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE 524
Q + P + + + ++ +++K +N + QA +L +E
Sbjct: 29 QHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRE 88
Query: 525 ASRHAI-MNSPQMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPAL 582
+ ++ V + ++ + L N+ S + A+ G IPA
Sbjct: 89 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 148
Query: 583 VKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV-----KFLA 637
+ LL+SP + A+ L N+ + V G + ++ LL ++ +L
Sbjct: 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 208
Query: 638 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP 697
+T L L + + Q LVR++ D E L + + +
Sbjct: 209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 698 AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL---SDAGTKVDGLESLLQSLVQLLASQ 754
+V+ G + L LG +V L + N+ +D T+ L LL +
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328
Query: 755 DINVITCAAGVTVCQVGGVEALVQTIVNAG 784
N+ A G + +Q +VN G
Sbjct: 329 KTNIQKEATWTMSNITAGRQDQIQQVVNHG 358
Score = 167 bits (424), Expect = 3e-44
Identities = 59/329 (17%), Positives = 117/329 (35%), Gaps = 22/329 (6%)
Query: 110 DEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI-MNSPQMVAAL 168
+ + ++ +++K +N + QA +L +E + ++
Sbjct: 46 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 105
Query: 169 VHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAIT 227
V + ++ + L N+ S + A+ G IPA + LL+SP + A+
Sbjct: 106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 165
Query: 228 TLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV-----KFLAIVTDCLQILAYGNQESK 282
L N+ + V G + ++ LL ++ +L +T L L +
Sbjct: 166 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225
Query: 283 LIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGH 342
+ Q LVR++ D E L + + + +V+ G + L LG
Sbjct: 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285
Query: 343 PSQRLVQNCLWTLRNL---SDAGTK-----------VSLLFNEIENIQRVAAGLLCEL-A 387
+V L + N+ +D T+ SLL N NIQ+ A + + A
Sbjct: 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Query: 388 QDKEGAETIEAEGATAPLTDLLHSRNEGV 416
++ + + G L +L +
Sbjct: 346 GRQDQIQQVVNHGLVPFLVGVLSKADFKT 374
Score = 128 bits (322), Expect = 3e-31
Identities = 83/440 (18%), Positives = 151/440 (34%), Gaps = 56/440 (12%)
Query: 2 EMVAALVHAISNSNDLETTKGAVGTLHNLS--HHRQGLLAIFKSGGIPALVKLLSKT--- 56
V +V I NSN+LE+ A L + + I ++G IP V L KT
Sbjct: 57 WSVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 115
Query: 57 ------------LVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPEL 104
+ + +S T + D AIP I LL ++ A A+ +
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDG-----GAIPAFISLLASPHAHISEQAVWALGNI 170
Query: 105 IKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVS-----QAAMMVHQLSKKEASRHAIM 159
+ D + AI L+ LL D ++ + L + + +
Sbjct: 171 AG--DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 160 NSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSSPV 218
Q++ LV + + ND E + + L+ + + K G +P LVKLL +
Sbjct: 229 AVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 219 ESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 278
++ A+ + N++ + V AG L LL T + + G
Sbjct: 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347
Query: 279 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK--PAIVEAGGMQAL 336
Q+ ++ LV ++ D++ + + + + +V G ++ L
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA-WAITNYTSGGTVEQIVYLVHCGIIEPL 406
Query: 337 AMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETI 396
L +++Q L + N+ A K L + ++ + I
Sbjct: 407 MNLLSAKDTKIIQVILDAISNIFQAAEK---------------------LGETEKLSIMI 445
Query: 397 EAEGATAPLTDLLHSRNEGV 416
E G + L NE V
Sbjct: 446 EECGGLDKIEALQRHENESV 465
Score = 118 bits (297), Expect = 6e-28
Identities = 64/382 (16%), Positives = 136/382 (35%), Gaps = 32/382 (8%)
Query: 3 MVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLSKTL---- 57
++ V + ++ + L N+ S + A+ G IPA + LL+
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 58 ---VTASSNNTLILQDDADLATR-----AIPELIKLLNDEDQDDADL-----ATRAIPEL 104
V A N I D + AI L+ LL D T + L
Sbjct: 161 EQAVWALGN---IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217
Query: 105 IKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQM 164
+ N D + +P L++LL+ D V++ + + L+ R ++ +
Sbjct: 218 CR--NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 165 VAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGLLAIFKSGGIPALVKLLSSPVESVLF 223
V LV + + +L A+ + N+ + + +G + LL++P ++
Sbjct: 276 VPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334
Query: 224 YAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCL-QILAYGNQESK 282
A T+ N+ ++ V G + +V +L + + K + + G E
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394
Query: 283 LIILASQGPVELVRIMRSYDYE---KLLWCTSRVLKVLSVCSSNKP---AIVEAGGMQAL 336
+ ++ L+ ++ + D + +L S + + + I E GG+ +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454
Query: 337 AMHLGHPSQRLVQNCLWTLRNL 358
H ++ + + L +
Sbjct: 455 EALQRHENESVYKASLNLIEKY 476
Score = 116 bits (291), Expect = 3e-27
Identities = 83/527 (15%), Positives = 172/527 (32%), Gaps = 76/527 (14%)
Query: 229 LHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS 288
+H+ H G + R +G + R ++ + TD +
Sbjct: 1 MHHHHHHSSG--LVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAM--ADIGSNQGTVN 56
Query: 289 QGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRL 347
++V+ + S + E L T K+LS I+ AG + LG
Sbjct: 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 116
Query: 348 VQ-NCLWTLRNLSDAGTK--------------VSLLFNEIENIQRVAAGLLCELAQDKEG 392
+Q W L N++ ++ +SLL + +I A L +A D
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 393 -AETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEI 451
+ + GA PL LL +
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPD-------------------------------------- 198
Query: 452 PSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVS 511
ST L S + ++ N D + +P L++LL+ D V++
Sbjct: 199 LSTLACGYLRNLTWTL---SNLCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 512 QAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH-RQGL 570
+ + L+ R ++ +V LV + + +L A+ + N+ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQT 309
Query: 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 630
+ +G + LL++P ++ A T+ N+ ++ V G + +V +L +
Sbjct: 310 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369
Query: 631 NNVKFLAIVTDCL-QILAYGNQESKLIILASQGPVELVRIMRSYDYE---KLLWCTSRVL 686
+ K + + G E + ++ L+ ++ + D + +L S +
Sbjct: 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429
Query: 687 KVLSVCSSNKP---AIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 730
+ + I E GG+ + H ++ + + L +
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476
Score = 65.8 bits (160), Expect = 4e-11
Identities = 40/253 (15%), Positives = 85/253 (33%), Gaps = 29/253 (11%)
Query: 13 NSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSKT--------------L 57
+ ND E + + L+ + + K G +P LVKLL T +
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 58 VTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDAD 117
VT + T + + A+ LL + + AT + + +DQ
Sbjct: 302 VTGTDEQTQKV-----IDAGALAVFPSLLTNPKTNIQKEATWTMSNITA--GRQDQIQQV 354
Query: 118 LATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND 177
+ +P L+ +L+ D +AA + + + + + + ++ D
Sbjct: 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414
Query: 178 LETTKGAVGTLHNL-------SHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLH 230
+ + + + N+ + + I + GG+ + L ESV ++ +
Sbjct: 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 231 NLLLHQEGSKMAV 243
+E V
Sbjct: 475 KYFSVEEEEDQNV 487
Score = 56.2 bits (135), Expect = 3e-08
Identities = 64/396 (16%), Positives = 131/396 (33%), Gaps = 48/396 (12%)
Query: 601 LHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILAS 660
+H+ H G + R +G + R ++ + TD +
Sbjct: 1 MHHHHHHSSG--LVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAM--ADIGSNQGTVN 56
Query: 661 QGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRL 719
++V+ + S + E L T K+LS I+ AG + LG
Sbjct: 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 116
Query: 720 VQ-NCLWTLRNL---SDAGTKVDGLESLLQSLVQLLASQDINVITCAAGV---------- 765
+Q W L N+ + TK + + + LLAS ++ A
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 766 ---TVCQVGGVEALVQTIVNAGDREEITEPADHSVNMW-----QQQNYLVDSGIHSGVNT 817
V + G ++ L+ ++ D + ++ + +N +
Sbjct: 177 FRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI-- 233
Query: 818 NAPSLTGKEEDMDGDQL------MFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVNAGD 871
P+L D + L + + G + V + G V LV+ +
Sbjct: 234 -LPTLVRLLHHNDPEVLADSCWAISYL----TDGPNERIEMVVKKGVVPQLVKLLGA--T 286
Query: 872 REEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRN 931
I PA+ A+ ++ + ++ V + +LL P + K + N
Sbjct: 287 ELPIVTPALRAIGNIVT---GTDEQTQKVIDAGALAVFPSLLTNPKT-NIQKEATWTMSN 342
Query: 932 LALCQANHAP-LREYGAIHLLVILLNRAFTDTQRVS 966
+ + + + +G + LV +L++A TQ+ +
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378
Score = 35.4 bits (81), Expect = 0.11
Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 23/145 (15%)
Query: 7 LVHAISNSNDLETTKGAVGTLHNLS--HHRQGLLAIFKSGGIPALVKLLSKTLVTASSNN 64
+ + + D +T K A + N + + ++ + G I L+ LLS
Sbjct: 362 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-------- 413
Query: 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATR-------AIPELIKLLNDEDQDDAD 117
D + + + + ++ + ++ L E++
Sbjct: 414 ------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 467
Query: 118 LATRAIPELIKLLNDEDQVVVSQAA 142
+ I + + +EDQ VV +
Sbjct: 468 ASLNLIEKYFSVEEEEDQNVVPETT 492
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 171 bits (435), Expect = 3e-48
Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 12/249 (4%)
Query: 524 EASRHAIMNS---PQMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGI 579
S H + PQM L NS+D++ A + S + + A+ +G +
Sbjct: 2 RGSHHHHHHGSELPQMTQQL-----NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL 56
Query: 580 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIV 639
PALV+LLSSP E +L A+ L N+ AV AG L +V LL N + L
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 640 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 699
L +A G E ++ + LV+++ S + + L + + S + A+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176
Query: 700 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGL---ESLLQSLVQLLASQDI 756
++AG + AL L P+++++Q LW L N++ G + L+ L QL + ++
Sbjct: 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236
Query: 757 NVITCAAGV 765
+ A
Sbjct: 237 KIQKEAQEA 245
Score = 165 bits (421), Expect = 2e-46
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 152 EASRHAIMNS---PQMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGI 207
S H + PQM L NS+D++ A + S + + A+ +G +
Sbjct: 2 RGSHHHHHHGSELPQMTQQL-----NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL 56
Query: 208 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIV 267
PALV+LLSSP E +L A+ L N+ AV AG L +V LL N + L
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 268 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 327
L +A G E ++ + LV+++ S + + L + + S + A+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176
Query: 328 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------------VSLLFNEIE 373
++AG + AL L P+++++Q LW L N++ G + L +E E
Sbjct: 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236
Query: 374 NIQRVAAGLLCELA 387
IQ+ A L +L
Sbjct: 237 KIQKEAQEALEKLQ 250
Score = 94.7 bits (236), Expect = 9e-22
Identities = 48/251 (19%), Positives = 107/251 (42%), Gaps = 27/251 (10%)
Query: 2 EMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLSKT---- 56
+ + + NS+D++ A + S + + A+ +G +PALV+LLS
Sbjct: 12 SELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 57 ----------LVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIK 106
+ + + + + A+P L++LL+ ++ A A+ +
Sbjct: 71 LQEALWALSNIASGGNEQIQAV-----IDAGALPALVQLLSSPNEQILQEALWALSNIAS 125
Query: 107 LLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMV 165
+Q A + A+P L++LL+ ++ ++ +A + ++ A++++ +
Sbjct: 126 --GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-AL 182
Query: 166 AALVHAISNSNDLETTKGAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 224
ALV +S S + + + A+ L N++ + A+ ++G + L +L S E +
Sbjct: 183 PALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 225 AITTLHNLLLH 235
A L L H
Sbjct: 242 AQEALEKLQSH 252
Score = 88.5 bits (220), Expect = 1e-19
Identities = 67/333 (20%), Positives = 127/333 (38%), Gaps = 88/333 (26%)
Query: 29 NLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLND 88
+ HH G +P + + L +S++ ATR ++L+D
Sbjct: 4 SHHHHHHG-------SELPQMTQQL-------NSDDMQEQLS----ATRK---FSQILSD 42
Query: 89 EDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQL 148
+ E I+ + D A+P L++LL+ ++ ++ +A + +
Sbjct: 43 GN------------EQIQAVIDAG---------ALPALVQLLSSPNEQILQEALWALSNI 81
Query: 149 SKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGG 206
+ A++++ + ALV +S+ N+ + + A+ L N++ A+ +G
Sbjct: 82 ASGGNEQIQAVIDA-GALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 207 IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAI 266
+PALV+LLSSP E +L A+ L N+ AV AG L +V LL N + I
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---I 196
Query: 267 VTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPA 326
+ + L L+ + S + K A
Sbjct: 197 LQEALWALSN---------------------------------------IASGGNEQKQA 217
Query: 327 IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 359
+ EAG ++ L H ++++ + L L
Sbjct: 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
Score = 70.8 bits (174), Expect = 1e-13
Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 42/254 (16%)
Query: 293 ELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 352
++ + + S D ++ L T + ++LS + A+++AG + AL L P+++++Q L
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 353 WTLRNLS---DAGTK-----------VSLLFNEIENIQRVAAGLLCELAQD-KEGAETIE 397
W L N++ + + V LL + E I + A L +A E + +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 398 AEGATAPLTDLLHSRNEGV---------EILIQGVHKIFKIHKINIHRGCLMFPETLEEG 448
GA L LL S NE + I G +I + I G L L +
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV----IDAGAL---PALVQL 188
Query: 449 IEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQV 508
+ P+ Q A+ + K AV A+ +L +L + E++
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKE-----------AGALEKLEQLQSHENEK 237
Query: 509 VVSQAAMMVHQLSK 522
+ +A + +L
Sbjct: 238 IQKEAQEALEKLQS 251
Score = 68.1 bits (167), Expect = 1e-12
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 665 ELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 724
++ + + S D ++ L T + ++LS + A+++AG + AL L P+++++Q L
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 725 WTLRNLS---DAGTKVDGLESLLQSLVQLLASQDINVITCAAGV-------------TVC 768
W L N++ + + L +LVQLL+S + ++ A V
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 769 QVGGVEALVQTIVNAGDREEITEPA----DHSVNMWQQQNYLVDSGIHSGVNTNAPSLTG 824
G + ALVQ ++++ + + + E + + +Q ++D+G + L+
Sbjct: 136 DAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALVQLLSS 191
Query: 825 KEEDMDGDQLMFEMDQGFG---QGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVC 881
E + + L G + + V + G +E L Q + + + E+I + A
Sbjct: 192 PNEQILQEALW-----ALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHEN-EKIQKEAQE 244
Query: 882 ALRHLTS 888
AL L S
Sbjct: 245 ALEKLQS 251
Score = 44.2 bits (105), Expect = 1e-04
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 851 VTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIV 910
V G + ALVQ ++++ + E+I + A+ AL ++ S E AV + +V
Sbjct: 132 QAVIDAGALPALVQ-LLSSPN-EQILQEALWALSNIASGGNEQ---IQAVIDAGALPALV 186
Query: 911 NLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLN 956
LL+ P+ L +A+ L + ++E GA+ L L +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232
Score = 37.3 bits (87), Expect = 0.017
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 851 VTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIV 910
V G + ALVQ + + E+I + A+ AL ++ S AV + +V
Sbjct: 48 QAVIDAGALPALVQLLSS--PNEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALV 102
Query: 911 NLLNPPSRWPLVKAVIGLIRNLALCQANHAPL-REYGAIHLLVILLNRAFTDTQR 964
LL+ P+ +++ + + N+A + GA+ LV LL+ +
Sbjct: 103 QLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Score = 36.9 bits (86), Expect = 0.024
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 852 TVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVN 911
+ + Q +N+ D +E A + S +E Q + + +V
Sbjct: 7 HHHHGSELPQMTQ-QLNSDDMQEQLS-ATRKFSQILSDG--NEQIQAVIDAG-ALPALVQ 61
Query: 912 LLNPPSRWPLVKAVIGLIRNLALCQANHAPL-REYGAIHLLVILLN 956
LL+ P+ +++ + + N+A + GA+ LV LL+
Sbjct: 62 LLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 168 bits (428), Expect = 4e-45
Identities = 81/438 (18%), Positives = 158/438 (36%), Gaps = 53/438 (12%)
Query: 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTA 60
+EMV +L+ + + + + TL +S + +++ +SG +P L++LL +
Sbjct: 31 VEMVYSLLSMLGTHDKDDMS----RTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDS 86
Query: 61 SSNNTLILQDDA-DLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLA 119
+A A+ A+ +I D+ + ++ + E I+ + + +
Sbjct: 87 VLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146
Query: 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS---------PQMVAALVH 170
+ + + + + A ++ +LS E RHA+ Q+ +
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYG 206
Query: 171 AISNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITT 228
++ + + A L NL+ G + ALV L S E + +
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266
Query: 229 LHNL-LLHQEGSKMAVRLAGGLQKMV-LLLGRNNVKFLAIVTDCLQILAYGNQESKLIIL 286
L NL SK +R G ++ ++ L L V L L+ E+K I
Sbjct: 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326
Query: 287 ASQGPVE-LVRIMRSYDY-------EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAM 338
A G + LV + E V +++ ++ + E +Q L
Sbjct: 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386
Query: 339 HLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEA 398
HL S +V N TL NLS A++ + E +
Sbjct: 387 HLKSHSLTIVSNACGTLWNLS---------------------------ARNPKDQEALWD 419
Query: 399 EGATAPLTDLLHSRNEGV 416
GA + L +L+HS+++ +
Sbjct: 420 MGAVSMLKNLIHSKHKMI 437
Score = 152 bits (386), Expect = 9e-40
Identities = 92/519 (17%), Positives = 167/519 (32%), Gaps = 128/519 (24%)
Query: 146 HQLSKKEASRHAIMNSPQ-------MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 198
H S R + M MV +L+ + + + + TL +S +
Sbjct: 8 HHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMS----RTLLAMSSSQDSC 63
Query: 199 LAIFKSGGIPALVKLLSSP------------VESVLFYAITTLHNLLLHQEGSKMAVRLA 246
+++ +SG +P L++LL + A LHN++ Q K R
Sbjct: 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI 123
Query: 247 GGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKL 306
L + QI AY + G + M + ++
Sbjct: 124 RVLHLLE------------------QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQI 165
Query: 307 LWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL-----------GHPSQRLVQNCLWTL 355
VL LS ++ A+ E GG+QA+A L H S L + L
Sbjct: 166 CPAVC-VLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224
Query: 356 RNLS--DAGTK-------------VSLLFNEIENIQRVAAGLLCELA--QDKEGAETIEA 398
NL+ D K V+ L +E E++Q+V A +L L+ D +T+
Sbjct: 225 TNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 284
Query: 399 EGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDT 458
G+ L +E ++ ST
Sbjct: 285 VGSVKAL----------MECALEVKK---------------------------ESTLKSV 307
Query: 459 AQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQV----VVSQAA 514
+A+ L+ K + A+ L+ L Q ++
Sbjct: 308 L--SALWNLSAHCTENKADICA----------VDGALAFLVGTLTYRSQTNTLAIIESGG 355
Query: 515 MMVHQLSKKEASRH---AIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS-HHRQGL 570
++ +S A+ I+ + L+ + + + A GTL NLS + +
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL-TIVSNACGTLWNLSARNPKDQ 414
Query: 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQE 609
A++ G + L L+ S + + + L NL+ ++
Sbjct: 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453
Score = 121 bits (304), Expect = 4e-29
Identities = 79/455 (17%), Positives = 145/455 (31%), Gaps = 44/455 (9%)
Query: 339 HLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIE----NIQRVAAGLLCELAQDKEGAE 394
H H S LV R S GTKV ++++ + + + + L ++ ++
Sbjct: 6 HHHHHSSGLVPRGSHM-RLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCI 64
Query: 395 TIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPST 454
++ G L LLH ++ +L + + L I
Sbjct: 65 SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS---------AALHNII----- 110
Query: 455 QFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAA 514
+R +L+ + + + + + + + A
Sbjct: 111 -HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169
Query: 515 MMVHQLSKKEASRHAIMNS---------PQMVAALVHAISNSNDLETTKGAVGTLHNLSH 565
++ +LS E RHA+ Q+ + ++ + + A L NL+
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229
Query: 566 H--RQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL-LLHQEGSKMAVRLAGGLQ 622
G + ALV L S E + + L NL SK +R G ++
Sbjct: 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289
Query: 623 KMV-LLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVE-LVRIMRSYDY----- 675
++ L L V L L+ E+K I A G + LV +
Sbjct: 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349
Query: 676 --EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS-- 731
E V +++ ++ + E +Q L HL S +V N TL NLS
Sbjct: 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409
Query: 732 -DAGTKVDGLESLLQSLVQLLASQDINVITCAAGV 765
+ + L L+ S+ + +A
Sbjct: 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444
Score = 107 bits (268), Expect = 1e-24
Identities = 62/471 (13%), Positives = 127/471 (26%), Gaps = 154/471 (32%)
Query: 518 HQLSKKEASRHAIMNSPQ-------MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 570
H S R + M MV +L+ + + + + TL +S +
Sbjct: 8 HHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMS----RTLLAMSSSQDSC 63
Query: 571 LAIFKSGGIPALVKLLSSP------------VESVLFYAITTLHNLLLHQEGSKMAVRLA 618
+++ +SG +P L++LL + A LHN++ Q K R
Sbjct: 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI 123
Query: 619 GGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKL 678
L + QI AY + G + M
Sbjct: 124 RVLHLLE------------------QIRAYCETCWEWQEAHEPGMDQDKNPMP------- 158
Query: 679 LWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVD 738
P + + + L LS
Sbjct: 159 -----------------------------------APVEHQICPAVCVLMKLS------- 176
Query: 739 GLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVN 798
+ + + ++GG++A+ + + E+ + +
Sbjct: 177 --------------FDEEHR------HAMNELGGLQAIAELLQV---DCEMYGLTNDHYS 213
Query: 799 MWQQQN---YLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQ 855
+ ++ L + N
Sbjct: 214 ITLRRYAGMALTNLTFGDVANK--------------------------------ATLCSM 241
Query: 856 VGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNP 915
G + ALV + + E++ + LR+L+ R ++ +R ++ ++
Sbjct: 242 KGCMRALVAQL--KSESEDLQQVIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALE 297
Query: 916 PSRWPLVKAVIGLIRNLA-LCQANHAPL-REYGAIHLLVILLNRAFTDTQR 964
+ +K+V+ + NL+ C N A + GA+ LV L
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348
Score = 106 bits (267), Expect = 2e-24
Identities = 63/378 (16%), Positives = 127/378 (33%), Gaps = 37/378 (9%)
Query: 7 LVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTL 66
V ++ E A LHN+ H + + + L++ +
Sbjct: 86 SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR--------AYCE 137
Query: 67 ILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPEL 126
+ + + + + + A L+KL DE+ A + +
Sbjct: 138 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV---LMKLSFDEEHRHAMNELGGLQAI 194
Query: 127 IKLL-----------NDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISN 174
+LL + + A M + L+ A++ + + + ALV +
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-K 253
Query: 175 SNDLETTKGAVGTLHNLS--HHRQGLLAIFKSGGIPALVKLL-SSPVESVLFYAITTLHN 231
S + + L NLS + + G + AL++ ES L ++ L N
Sbjct: 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313
Query: 232 LLLHQEGSKMA-VRLAGGLQKMVLLLGRNN-VKFLAIVTDCLQILAY------GNQESKL 283
L H +K + G L +V L + LAI+ IL N++ +
Sbjct: 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373
Query: 284 IILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV-CSSNKPAIVEAGGMQALAMHLGH 342
I+ + L++ ++S+ ++ L LS ++ A+ + G + L +
Sbjct: 374 ILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432
Query: 343 PSQRLVQNCLWTLRNLSD 360
+ + LRNL
Sbjct: 433 KHKMIAMGSAAALRNLMA 450
Score = 102 bits (256), Expect = 5e-23
Identities = 68/449 (15%), Positives = 141/449 (31%), Gaps = 73/449 (16%)
Query: 310 TSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLF 369
SR L +S + ++ ++G + L L D + +
Sbjct: 49 MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGN----------------DKDSVLLGNS 92
Query: 370 NEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKI 429
+ + A+ L + + + E L + + + E +
Sbjct: 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE----- 147
Query: 430 HKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQ--MLKHAVVNLINYQDD 487
+++ + AV L + S +HA+ L
Sbjct: 148 -------------PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL------ 188
Query: 488 ADLATRAIPELIKLL-----------NDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQ 535
+ + +LL + + A M + L+ A++ + +
Sbjct: 189 -----GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243
Query: 536 MVAALVHAISNSNDLETTKGAVGTLHNLS--HHRQGLLAIFKSGGIPALVKLL-SSPVES 592
+ ALV + S + + L NLS + + G + AL++ ES
Sbjct: 244 CMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
Query: 593 VLFYAITTLHNLLLHQEGSKMA-VRLAGGLQKMVLLLGRNN-VKFLAIVTDCLQILAY-- 648
L ++ L NL H +K + G L +V L + LAI+ IL
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 649 ----GNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV-CSSNKPAIVEAG 703
N++ + I+ + L++ ++S+ ++ L LS ++ A+ + G
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 704 GMQALAMHLGHPSQRLVQNCLWTLRNLSD 732
+ L + + + LRNL
Sbjct: 422 AVSMLKNLIHSKHKMIAMGSAAALRNLMA 450
Score = 97.7 bits (243), Expect = 2e-21
Identities = 45/296 (15%), Positives = 92/296 (31%), Gaps = 31/296 (10%)
Query: 13 NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDA 72
+ AV L LS + A+ + GG+ A+ +LL N
Sbjct: 158 PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217
Query: 73 DLATRA---------------------IPELIKLLNDEDQDDADLATRAIPELIKLLNDE 111
A A + L+ L E +D + + L +
Sbjct: 218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN 277
Query: 112 DQDDADLATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALV 169
+ ++ L++ + + + + + LS ++ I +A LV
Sbjct: 278 SKK-TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336
Query: 170 HAISN---SNDLETTKGAVGTLHNLSHH----RQGLLAIFKSGGIPALVKLLSSPVESVL 222
++ +N L + G L N+S + ++ + L++ L S +++
Sbjct: 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396
Query: 223 FYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGN 278
A TL NL + A+ G + + L+ + L+ L
Sbjct: 397 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452
Score = 83.9 bits (207), Expect = 5e-17
Identities = 72/494 (14%), Positives = 151/494 (30%), Gaps = 69/494 (13%)
Query: 179 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG 238
+ G + SH R K + +L+ +L + + TL + Q+
Sbjct: 6 HHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSSSQD- 61
Query: 239 SKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIM 298
S +++R +G L ++ LL + V +
Sbjct: 62 SCISMRQSGCLPLLIQLL-------------------------------HGNDKDSVLLG 90
Query: 299 RSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 358
S ++ S L + + + L + R W +
Sbjct: 91 NSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI-----RAYCETCWEWQEA 145
Query: 359 SDAGT--KVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416
+ G + + +E+ A +L +L+ D+E + G + +LL E
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY 205
Query: 417 EILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQ---PTAVQRLTEPSQM 473
+ + I + R M L G + + V +L S+
Sbjct: 206 GLTNDH-------YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 474 LKHAVV----NLINYQDD----ADLATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKK- 523
L+ + NL D ++ L++ + + + + + LS
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 524 EASRHAIMNSPQMVAALVHAISN---SNDLETTKGAVGTLHNLSHH----RQGLLAIFKS 576
++ I +A LV ++ +N L + G L N+S + ++
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 577 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFL 636
+ L++ L S +++ A TL NL + A+ G + + L+ +
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438
Query: 637 AIVTDCLQILAYGN 650
L+ L
Sbjct: 439 MGSAAALRNLMANR 452
Score = 82.7 bits (204), Expect = 1e-16
Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 23/247 (9%)
Query: 12 SNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLS-------KTLVTASS 62
++ + + A L NL+ G + ALV L + + +
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268
Query: 63 NNTLILQDDADLATR---AIPELIKLLND-EDQDDADLATRAIPELIKLLNDEDQDDADL 118
N + ++ R ++ L++ + + + A+ L E++ D
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS-AHCTENKADICA 327
Query: 119 ATRAIPELIKLLNDEDQV----VVSQAAMMVHQLSKKEASRH---AIMNSPQMVAALVHA 171
A+ L+ L Q ++ ++ +S A+ I+ + L+
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387
Query: 172 ISNSNDLETTKGAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLH 230
+ + + A GTL NLS + + A++ G + L L+ S + + + L
Sbjct: 388 LKSHSL-TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446
Query: 231 NLLLHQE 237
NL+ ++
Sbjct: 447 NLMANRP 453
Score = 53.4 bits (128), Expect = 2e-07
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 20/171 (11%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF--KSGGIPALVKLLSK----TL 57
V AL+ T K + L NLS H A G + LV L+
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347
Query: 58 VTASSNNTLILQDDADLATR------------AIPELIKLLNDEDQDDADLATRAIPELI 105
+ + IL++ + L + L++ L A + L
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407
Query: 106 KLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH 156
+ +A A+ L L++ + +++ +A + L +++
Sbjct: 408 A--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456
Score = 47.6 bits (113), Expect = 2e-05
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 857 GGVEALVQTIVNA--GDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLN 914
G + LV T+ + I E LR+++S +E + +R N +QT++ L
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389
Query: 915 PPSRWPLVKAVIGLIRNL-ALCQANHAPLREYGAIHLLVILLNRAFTDTQR 964
S +V G + NL A + L + GA+ +L L++
Sbjct: 390 SHSL-TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 439
Score = 42.6 bits (100), Expect = 5e-04
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 850 QVTVCQVGGVEALVQ---------TIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAV 900
+ + ++GG++A+ + + N + A AL +LT +
Sbjct: 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLC 239
Query: 901 RLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLAL--CQANHAPLREYGAIHLLVILLNRA 958
+ ++ +V L S ++RNL+ + LRE G++ L+
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIA-SVLRNLSWRADVNSKKTLREVGSVKALMECALEV 298
Query: 959 FTDTQRVSRTGL 970
++ S
Sbjct: 299 KKESTLKSVLSA 310
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 158 bits (401), Expect = 3e-44
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 9/212 (4%)
Query: 152 EASRHAIMNS---PQMVAALVHAISNSNDLETTKGAVGTLHNLS-HHRQGLLAIFKSGGI 207
S H + PQMV L NS D + + A+ L ++ + + A+ +G +
Sbjct: 2 RGSHHHHHHGSELPQMVQQL-----NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL 56
Query: 208 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIV 267
PALV+LLSSP E +L A+ L N+ AV AG L +V LL N + L
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 268 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 327
L +A G E ++ + LV+++ S + + L + + S + K A+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176
Query: 328 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 359
EAG ++ L H ++++ + L L
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 158 bits (401), Expect = 3e-44
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 9/212 (4%)
Query: 524 EASRHAIMNS---PQMVAALVHAISNSNDLETTKGAVGTLHNLS-HHRQGLLAIFKSGGI 579
S H + PQMV L NS D + + A+ L ++ + + A+ +G +
Sbjct: 2 RGSHHHHHHGSELPQMVQQL-----NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL 56
Query: 580 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIV 639
PALV+LLSSP E +L A+ L N+ AV AG L +V LL N + L
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 640 TDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAI 699
L +A G E ++ + LV+++ S + + L + + S + K A+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176
Query: 700 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731
EAG ++ L H ++++ + L L
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 78.4 bits (194), Expect = 2e-16
Identities = 62/274 (22%), Positives = 107/274 (39%), Gaps = 81/274 (29%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSKTLVTASS 62
+ +V ++ S D + + A+ L ++ + + A+ +G +PALV+LL SS
Sbjct: 14 LPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-------SS 65
Query: 63 NNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRA 122
N ILQ+ A A L N +A+ +Q A + A
Sbjct: 66 PNEQILQE----ALWA------LSN--------IAS----------GGNEQIQAVIDAGA 97
Query: 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTK 182
+P L++LL+ ++ ++ +A
Sbjct: 98 LPALVQLLSSPNEQILQEAL---------------------------------------- 117
Query: 183 GAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 241
L N++ + + A+ +G +PALV+LLSSP E +L A+ L N+ K
Sbjct: 118 ---WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 242 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 275
AV+ AG L+K+ L N K + L+ L
Sbjct: 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 66.5 bits (163), Expect = 2e-12
Identities = 49/286 (17%), Positives = 92/286 (32%), Gaps = 82/286 (28%)
Query: 321 SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAA 380
+ + + L P Q+ +Q+ L L ++ G E IQ V
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN---------EQIQAVI- 51
Query: 381 GLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLM 440
GA L LL S NE +
Sbjct: 52 -----------------DAGALPALVQLLSSPNEQI------------------------ 70
Query: 441 FPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIK 500
+ A+ + AV+ DA A+P L++
Sbjct: 71 --------------LQEAL--WALSNIASGGNEQIQAVI-------DAG----ALPALVQ 103
Query: 501 LLNDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGT 559
LL+ ++ ++ +A + ++ A++++ + ALV +S S + + + A+
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLS-SPNEQILQEALWA 161
Query: 560 LHNL-SHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
L N+ S + A+ ++G + L +L S E + A L L
Sbjct: 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 58.4 bits (142), Expect = 1e-09
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSKTLVTASS 62
+ ALV +S S + + + A+ L N++ + A+ +G +PALV+LLS
Sbjct: 56 LPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 63 NNTLILQD---------DADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQ 113
L + A + A+P L++LL+ ++ A A+ + +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--ASGGNEQ 172
Query: 114 DDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK 150
A A+ +L +L + E++ + +A + +L
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 52.6 bits (127), Expect = 9e-08
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 666 LVRIMRSYDYEKLLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNCL 724
+V+ + S D ++L R L ++ + A+++AG + AL L P+++++Q L
Sbjct: 17 MVQQLNSPDQQELQSAL-RKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 725 WTLRNLS---DAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIV 781
W L N++ + + L +LVQLL+S + ++ A G +Q ++
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 782 NAG 784
+AG
Sbjct: 136 DAG 138
Score = 49.9 bits (120), Expect = 7e-07
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 693 SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQS-----L 747
+ + + L P Q+ +Q+ L L ++ G + +++++ + L
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN--EQIQAVIDAGALPAL 59
Query: 748 VQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAG 784
VQLL+S + ++ A G +Q +++AG
Sbjct: 60 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Score = 34.9 bits (81), Expect = 0.078
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 851 VTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIV 910
V G + ALVQ ++++ + E+I + A+ AL ++ S AV + +V
Sbjct: 48 QAVIDAGALPALVQ-LLSSPN-EQILQEALWALSNIAS---GGNEQIQAVIDAGALPALV 102
Query: 911 NLLNPPSRWPLVKAVIGLIRNLALC-QANHAPLREYGAIHLLVILLNRAFTDTQRVSRTG 969
LL+ P+ +++ + + N+A + + GA+ LV LL+ + +
Sbjct: 103 QLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161
Query: 970 LF 971
L
Sbjct: 162 LS 163
Score = 33.4 bits (77), Expect = 0.21
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 856 VGGVEALVQTIVNAG-----------DREEITEPAVCALRHLTSRHVESEMAQNAVRLNY 904
G +Q +++AG E+I + A+ AL ++ S +E Q +
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAG- 138
Query: 905 GIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAP-LREYGAIHLLVILLNRAFTDTQ 963
+ +V LL+ P+ +++ + + N+A ++E GA+ L L + Q
Sbjct: 139 ALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 197
Query: 964 RVSRTGL 970
+ ++ L
Sbjct: 198 KEAQEAL 204
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 164 bits (415), Expect = 6e-43
Identities = 58/326 (17%), Positives = 117/326 (35%), Gaps = 5/326 (1%)
Query: 464 VQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ-LSK 522
T+ + + ++ Q + +P++ + LN +D A + Q LS+
Sbjct: 58 FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117
Query: 523 KEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPA 581
+ ++ +V LV + + A L N++ + + +P
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177
Query: 582 LVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTD 641
++LL + V AI L N+ + V ++ ++ L N + T
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237
Query: 642 CLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVE 701
L L G + + SQ L +++ S D E L+ + + A+++
Sbjct: 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID 297
Query: 702 AGGMQALAMHLGHPSQRLVQNCLWTLRNL---SDAGTKVDGLESLLQSLVQLLASQDINV 758
+ L L H S + L + N+ +D T+V +L +L LL+S N+
Sbjct: 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI 357
Query: 759 ITCAAGVTVCQVGGVEALVQTIVNAG 784
A G +Q +++A
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDAN 383
Score = 154 bits (390), Expect = 8e-40
Identities = 75/444 (16%), Positives = 153/444 (34%), Gaps = 28/444 (6%)
Query: 102 PELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ-LSKKEASRHAIMN 160
E + DQ + +P++ + LN +D A + Q LS++ ++
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 161 SPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLL-AIFKSGGIPALVKLLSSPVE 219
+V LV + + A L N++ + + +P ++LL +
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 220 SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 279
V AI L N+ + V ++ ++ L N + T L L G +
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247
Query: 280 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMH 339
+ SQ L +++ S D E L+ + + A+++ + L
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 340 LGHPSQRLVQNCLWTLRNLS-----------DAG---TKVSLLFNEIENIQRVAAGLLCE 385
L H S + L + N+ +AG LL + ENI++ A +
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367
Query: 386 L-AQDKEGAETIEAEGATAPLTDLLHSRNEGVEI--------LIQGVHKIFKIHKINIHR 436
+ A + E + + PL LL + G + I + + +
Sbjct: 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 427
Query: 437 GCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIP 496
GC+ + L + +EI + A++ + + + K A IN D +
Sbjct: 428 GCI---KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGME 484
Query: 497 ELIKLLNDEDQVVVSQAAMMVHQL 520
++ +E+ + +A ++
Sbjct: 485 KIFNCQQNENDKIYEKAYKIIETY 508
Score = 122 bits (306), Expect = 4e-29
Identities = 70/418 (16%), Positives = 126/418 (30%), Gaps = 55/418 (13%)
Query: 3 MVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASS 62
+V LV + + A L N++ +
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD----------------- 173
Query: 63 NNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRA 122
A+P I+LL + + A A+ + + D D L A
Sbjct: 174 ---------------AVPLFIQLLYTGSVEVKEQAIWALGNVAG--DSTDYRDYVLQCNA 216
Query: 123 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTK 182
+ ++ L N ++ A + L + + + Q + L I S D ET
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLV 275
Query: 183 GAVGTLHNLSHHRQGLLAIF-KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 241
A + LS Q + LV+LLS V A+ + N++ +
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335
Query: 242 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY 301
V AG L + LLL + + GN E ++ + LV+++
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 302 DYE---KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNL 358
+Y+ + W S +V G ++ L L R+++ L L N+
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455
Query: 359 SDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416
G E A+ IE G + + + N+ +
Sbjct: 456 LKMGEADK----------------EARGLNINENADFIEKAGGMEKIFNCQQNENDKI 497
Score = 104 bits (261), Expect = 2e-23
Identities = 76/528 (14%), Positives = 155/528 (29%), Gaps = 99/528 (18%)
Query: 258 RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 317
RN + + + + + + Q ++ + + S D ++ L T + ++L
Sbjct: 56 RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL 115
Query: 318 SVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQ 376
S +++AG + L + N+ E +Q
Sbjct: 116 SREHRPPIDVVIQAGVVPRLVEFMRE---------------------------NQPEMLQ 148
Query: 377 RVAAGLLCELAQ-DKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIH 435
AA L +A + + A LL++ + E+ Q + + +
Sbjct: 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--EVKEQAIWALGNVAGD--- 203
Query: 436 RGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAI 495
S + V+ A+
Sbjct: 204 -----------------------------------STDYRDYVLQ-----------CNAM 217
Query: 496 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKG 555
++ L N ++ A + L + + + Q + L I S D ET
Sbjct: 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVD 276
Query: 556 AVGTLHNLSHHRQGLLAIF-KSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614
A + LS Q + LV+LLS V A+ + N++ +
Sbjct: 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 336
Query: 615 VRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYD 674
V AG L + LLL + + GN E ++ + LV+++ +
Sbjct: 337 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 396
Query: 675 YE---KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 731
Y+ + W S +V G ++ L L R+++ L L N+
Sbjct: 397 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456
Query: 732 DAGTKVDGLESL--------------LQSLVQLLASQDINVITCAAGV 765
G L ++ + +++ + A +
Sbjct: 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504
Score = 58.1 bits (140), Expect = 8e-09
Identities = 60/367 (16%), Positives = 126/367 (34%), Gaps = 49/367 (13%)
Query: 630 RNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 689
RN + + + + + + Q ++ + + S D ++ L T + ++L
Sbjct: 56 RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL 115
Query: 690 SVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQ-NCLWTLRNL---SDAGTKVDGLESLL 744
S +++AG + L + ++Q W L N+ + A TKV +
Sbjct: 116 SREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175
Query: 745 QSLVQLLASQDINVITCAAGV-------------TVCQVGGVEALVQTIVNAGDREEITE 791
+QLL + + V A V Q +E ++ + N+ I
Sbjct: 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG-LFNSNKPSLIRT 234
Query: 792 PADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQG---------- 841
N+ + + D + S P+L +L++ MD
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQA---LPTLA---------KLIYSMDTETLVDACWAIS 282
Query: 842 -FGQGFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAV 900
G + V V + LV+ + + + + PA+ A+ ++ + +++ V
Sbjct: 283 YLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQTPALRAVGNIVT---GNDLQTQVV 337
Query: 901 RLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALC-QANHAPLREYGAIHLLVILLNRAF 959
+ + LL+ P + K I N+ + + I LV LL A
Sbjct: 338 INAGVLPALRLLLSSPKE-NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 396
Query: 960 TDTQRVS 966
T++ +
Sbjct: 397 YKTKKEA 403
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 161 bits (407), Expect = 9e-42
Identities = 75/409 (18%), Positives = 147/409 (35%), Gaps = 38/409 (9%)
Query: 563 LSHHRQGLLAIFKS-------------GGIPALVKLLSSPVESVLFYAITTLHNLLLHQE 609
L+ H +G LA S +P ++ +L +++V A L +L +
Sbjct: 21 LAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80
Query: 610 GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVR 668
K VR G+ +V LL + L+ +++G +Q++K+ I G LVR
Sbjct: 81 KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 669 IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 728
++R L + L LS S K IV+ + ++ + W
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALT-------DEVIIPHSGWERE 193
Query: 729 NLSDAGTKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREE 788
D + ES+L + L + + C G V+AL+ + +++
Sbjct: 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD-GLVDALIFIVQAEIGQKD 252
Query: 789 ITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQ 848
+ LV++ + N + + + + G +
Sbjct: 253 S-------------DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPAR 299
Query: 849 DQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTS-RHVESEMAQNAVRLNYGIQ 907
+ Q V + ++ I E + A+++L + R ++A+R +
Sbjct: 300 GYELLFQPEVVRIYIS-LLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358
Query: 908 TIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLN 956
I +LL +VKA G +RNLA+ N + ++ +L+ L
Sbjct: 359 AIADLLTNEH-ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPG 406
Score = 146 bits (369), Expect = 7e-37
Identities = 78/470 (16%), Positives = 158/470 (33%), Gaps = 62/470 (13%)
Query: 191 LSHHRQGLLAIFKS-------------GGIPALVKLLSSPVESVLFYAITTLHNLLLHQE 237
L+ H +G LA S +P ++ +L +++V A L +L +
Sbjct: 21 LAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80
Query: 238 GSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVR 296
K VR G+ +V LL + L+ +++G +Q++K+ I G LVR
Sbjct: 81 KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 297 IMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 356
++R L + L LS S K IV+ + ++ + W
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALT-------DEVIIPHSGWERE 193
Query: 357 NLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416
D + + + N + E ++ + + E +G L ++ +
Sbjct: 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEAR--RKLRECDGLVDALIFIVQAEIGQK 251
Query: 417 EILIQGVHKI--FKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPS--- 471
+ + V + + E +E + T+ + L +P
Sbjct: 252 DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR 311
Query: 472 ---QMLKH------------AVVNLINYQDDADLATR-------AIPELIKLLNDEDQVV 509
+LK A+ NL + R A+ + LL +E + V
Sbjct: 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERV 371
Query: 510 VSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND-------LETTKGAVGTLHN 562
V A+ + L+ ++ I + LV + +T + T++
Sbjct: 372 VKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429
Query: 563 LSH-HRQGLLAIFKSGGIPALVKLLSSPVES--VLFYAITTLHNLLLHQE 609
+ + + + ++ GI LV + S S + A L + ++E
Sbjct: 430 VIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
Score = 107 bits (268), Expect = 3e-24
Identities = 73/449 (16%), Positives = 155/449 (34%), Gaps = 47/449 (10%)
Query: 534 PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSPVES 592
P+++A L A L +L + + + K GIP LV LL P +
Sbjct: 51 PEVIAML-----GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKE 105
Query: 593 VLFYAITTLHNLLL-HQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGN 650
V A L N+ + +K+A++ G+ +V LL + ++ ++T L L+ +
Sbjct: 106 VHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS-SH 164
Query: 651 QESKLIILASQGPVELVRIM----------------RSYDYEKLLWCTSRVLKVLSVCSS 694
K+ I+ ++ R ++E +L T+ L+ +S S
Sbjct: 165 DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS 224
Query: 695 -NKPAIVEAGGMQALAMHL-------GHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQS 746
+ + E G+ + + +LV+NC+ LRNLS + Q
Sbjct: 225 EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284
Query: 747 LVQLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYL 806
+A+ + Q V + ++ I E + ++ +
Sbjct: 285 AAPNVANN-TGTSPARGYELLFQPEVVRIYIS-LLKESKTPAILEASAGAIQNLCAGRWT 342
Query: 807 VDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQV--TVCQVGGVEALVQ 864
I S + + + + + + G + D + + LV+
Sbjct: 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVK 402
Query: 865 TIVNAGDR------EEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSR 918
+ E+ + + + + ++E A +R GI+ +V + +R
Sbjct: 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---AAKKLRETQGIEKLVLINKSGNR 459
Query: 919 WP-LVKAVIGLIRNLALCQANHAPLREYG 946
V+A +++ + + PL + G
Sbjct: 460 SEKEVRAAALVLQTIWGYKELRKPLEKEG 488
Score = 90.0 bits (222), Expect = 1e-18
Identities = 73/472 (15%), Positives = 146/472 (30%), Gaps = 108/472 (22%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSKTLVTASS 62
+ ++ + A L +L + + + K GIP LV LL
Sbjct: 50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108
Query: 63 NNTLILQD----------DADLATRAIPELIKLLND-EDQDDADLATRAIPELIKLLNDE 111
L++ A +P L++LL D D ++ T + L+
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGT----LWNLSSH 164
Query: 112 DQDDADLATRAIPELIKLL------------------NDEDQVVVSQAAMMVHQLSKK-E 152
D ++ A+ L + + E + V++ A + +S +
Sbjct: 165 DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS 224
Query: 153 ASRHAIMNSPQMVAALVHAISNS-----NDLETTKGAVGTLHNLSHHRQGLL-------- 199
+R + +V AL+ + +D + + V L NLS+ +
Sbjct: 225 EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284
Query: 200 ------------------AIFKSGGIPALVKLLS-SPVESVLFYAITTLHNL----LLHQ 236
+F+ + + LL S ++L + + NL +
Sbjct: 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344
Query: 237 EGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVR 296
+ A+R L + LL + + + + L+ LA + +LI LV+
Sbjct: 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVK 402
Query: 297 IMRSYDYEKLLWCTSRVLK--------VLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLV 348
+ + + V++ + E G++
Sbjct: 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEK------------- 449
Query: 349 QNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEG 400
L ++ +G N E R AA +L + KE + +E EG
Sbjct: 450 ------LVLINKSG-------NRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488
Score = 89.2 bits (220), Expect = 2e-18
Identities = 59/371 (15%), Positives = 127/371 (34%), Gaps = 30/371 (8%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSN 63
V ALV + + D++ T+ GTL NLS H + I +++
Sbjct: 135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194
Query: 64 N----TLILQDDADLATRA-IPELIKLLNDEDQDDADLATRAIPELIKLLN---DEDQDD 115
N ++ ++ L A + E + + LI ++ + D
Sbjct: 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSD 254
Query: 116 ADLATRAIPELIKLL------NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV 169
+ L + L L + + A + + A + ++ P++V +
Sbjct: 255 SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI 314
Query: 170 HAISNSNDLETTKGAVGTLHNLSHHRQGL-----LAIFKSGGIPALVKLLSSPVESVLFY 224
+ S + + G + NL R A+ + + A+ LL++ E V+
Sbjct: 315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA 374
Query: 225 AITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKF--------LAIVTDCLQILAY 276
A L NL + + + +V L + + + + +
Sbjct: 375 ASGALRNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432
Query: 277 GNQESKLIILASQGPVELVRIMRSYDY-EKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQA 335
N E+ + +QG +LV I +S + EK + + VL+ + + + + G ++
Sbjct: 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKS 492
Query: 336 LAMHLGHPSQR 346
+ + R
Sbjct: 493 DFQVNLNNASR 503
Score = 33.0 bits (74), Expect = 0.59
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 905 GIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQA-NHAPLREYGAIHLLVILLNRAFTDTQ 963
+ ++ +L A +++L +R+ I +LV LL+ +
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAA-AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVH 107
Query: 964 R 964
Sbjct: 108 L 108
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 151 bits (383), Expect = 2e-39
Identities = 81/471 (17%), Positives = 161/471 (34%), Gaps = 40/471 (8%)
Query: 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSP 217
+ P+ V L +S D + + + + +++ GGI LV LL SP
Sbjct: 2 LTIPKAVQYL-----SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP 56
Query: 218 VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAY 276
++V A L NL+ +K+ R G+++ V LL R N + +T L L+
Sbjct: 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116
Query: 277 GNQ-------------ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 323
++ ++II S + R ++ + + L+ LS +
Sbjct: 117 TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176
Query: 324 KPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLL 383
+ + G+ M + ++ N + +L N +
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC------MCVLHNLSYRLDAEVPTRY 230
Query: 384 CELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPE 443
+L + A T ++ N + + K H +
Sbjct: 231 RQLEYNARNAYTEKSS-TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYL 289
Query: 444 TLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLN 503
L + +T A A+Q LT ++ + LI ++ + +P++ +LL
Sbjct: 290 NLMGKSKKDATL--EACAGALQNLTASKGLMSSGMSQLIGLKE------KGLPQIARLLQ 341
Query: 504 DEDQVVVSQAAMMVHQLSKKEASRHAIMNS--PQMVAALVHAISNSNDL-ETTKGAVGTL 560
+ VV A ++ +S+ + N P++ L N+++ + A T+
Sbjct: 342 SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 561 HNLSH-HRQGLLAIFKSGGIPALVKLL-SSPVESVLFYAITTLHNLLLHQE 609
NL Q F S + ++ L SS A L ++ +E
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
Score = 135 bits (340), Expect = 7e-34
Identities = 72/470 (15%), Positives = 145/470 (30%), Gaps = 55/470 (11%)
Query: 531 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSP 589
+ P+ V L +S D + + + + +++ GGI LV LL SP
Sbjct: 2 LTIPKAVQYL-----SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP 56
Query: 590 VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAY 648
++V A L NL+ +K+ R G+++ V LL R N + +T L L+
Sbjct: 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116
Query: 649 GNQ-------------ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN 695
++ ++II S + R ++ + + L+ LS +
Sbjct: 117 TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176
Query: 696 KPAIVEAGGMQALAMHLGH-------PSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLV 748
+ + G+ M + V+NC+ L NLS
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236
Query: 749 QLLASQDINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVD 808
A + + C + ++N + E + +
Sbjct: 237 ARNAYTEKSSTGCFSN-----------KSDKMMNNNYDCPLPEEETNPKGSGWLYHS--- 282
Query: 809 SGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIVN 868
I + +N S + L Q+ + G+ + + + +
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342
Query: 869 AGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWP-----LVK 923
++ L ++ SRH V N + LL + ++
Sbjct: 343 --GNSDVVRSGASLLSNM-SRHPLLH----RVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395
Query: 924 AVIGLIRNLALCQANHAP-LREYGAIHLLV-ILLNRAFTDTQRVSRTGLF 971
+ +RNL Q A ++ ++ + + A +R L
Sbjct: 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445
Score = 88.7 bits (219), Expect = 1e-18
Identities = 61/443 (13%), Positives = 120/443 (27%), Gaps = 66/443 (14%)
Query: 13 NSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSKTLVTASSNNTLILQDD 71
+S D + + + + +++ GGI LV LL +
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--------------SPN 57
Query: 72 ADLATRAIPELIKL-LNDEDQDDADLATRAIPELIKLL-NDEDQDDADLATRAIPELIKL 129
++ A L L I E + LL + + T + L
Sbjct: 58 QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL--S 115
Query: 130 LNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 189
DE + + A+ V + I+ + D E A G L
Sbjct: 116 STDELKEELIADALPV-------LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLR 168
Query: 190 NLSHHRQGLLAIFKSGG-IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGG 248
NLS G + G I +L+ + + V + + + + + S
Sbjct: 169 NLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228
Query: 249 LQKMVLLLGRNNVKFLAIVTDCLQILAY--------------GNQESKLIILASQGPVEL 294
+ + RN + N + + S
Sbjct: 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288
Query: 295 VRIMRSYDYEKLLWCTSRVLKVLSVCSSNKP------AIVEAGGMQALAMHLGHPSQRLV 348
+ +M + L + L+ L+ ++ G+ +A L + +V
Sbjct: 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV 348
Query: 349 QNCLWTLRNLS-DAGTK-----------VSLL------FNEIENIQRVAAGLLCELAQ-D 389
++ L N+S LL + E+I A + L
Sbjct: 349 RSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408
Query: 390 KEGAETIEAEGATAPLTDLLHSR 412
+ A+ + + +L S
Sbjct: 409 PQLAKQYFSSSMLNNIINLCRSS 431
Score = 81.0 bits (199), Expect = 5e-16
Identities = 68/478 (14%), Positives = 136/478 (28%), Gaps = 65/478 (13%)
Query: 246 AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 305
+ K V L + K+ AI +Q + ++ +K + G +LV ++RS + +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QN 59
Query: 306 LLWCTSRVLKVLSVCSS-NKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK 364
+ + L+ L S+ NK G++ L
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN------------------- 100
Query: 365 VSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424
IQ+ GLL L+ E E + A L D + G +
Sbjct: 101 --------AEIQKQLTGLLWNLSSTDELKEEL-IADALPVLADRVIIPFSGWCDGNSNMS 151
Query: 425 KIFKIHKINIH-RGCLMF--------PETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLK 475
+ ++ + GCL I S V + ++
Sbjct: 152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSL--MAYVQNCVAASRCDDKSVE 209
Query: 476 HAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKE----------- 524
+ + L N D ++ S ++ K
Sbjct: 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269
Query: 525 ---ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR------QGLLAIFK 575
+ + ++ + S T + G L NL+ + L K
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329
Query: 576 SGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGG--LQKMVLLLGRNNV 633
G+P + +LL S V+ + L N+ H ++ + + G +
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 634 KFLAIVTDC--LQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVL 689
+ + C ++ L + +S ++ + RS K +L +
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Score = 80.3 bits (197), Expect = 8e-16
Identities = 55/385 (14%), Positives = 110/385 (28%), Gaps = 54/385 (14%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVV 138
IP+ ++ L+ +D+ + I DE I +L+ LL +Q V
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 139 SQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 198
AA + L + + + V + + + E K G L NLS +
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 199 LAIFKSGGIPALVKLLSSPV----------------ESVLFYAITTLHNLLLHQEGSKMA 242
+ + +P L + P V F A L NL G +
Sbjct: 122 EELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 243 VRLAGGLQKMVLLLGRNNVKFL---AIVTDCLQILAYGNQESKLIILASQGPVELVRIMR 299
+G + ++ + V +C+ +L + + +E
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 300 SYDYEKLLWCTSRV-----------LKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLV 348
+ +++ L + + ++ +G +
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 349 Q-NCLWTLRNLSDAGTK-------------------VSLLFNEIENIQRVAAGLLCELAQ 388
C L+NL+ + LL + ++ R A LL +++
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360
Query: 389 DKEGAETIEAEGATAPLTDLLHSRN 413
+ +T LL S
Sbjct: 361 HPLLHRVM-GNQVFPEVTRLLTSHT 384
Score = 72.9 bits (178), Expect = 2e-13
Identities = 41/323 (12%), Positives = 93/323 (28%), Gaps = 32/323 (9%)
Query: 6 ALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGG-IPALVKLLSKTLVTASSNN 64
+ D E A G L NLS G + G I +L+ +
Sbjct: 146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC-------- 197
Query: 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIP 124
+ +++ + +L++ +L + + + +
Sbjct: 198 ----VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNK 253
Query: 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGA 184
+ N+ D + + + + ++ + S T +
Sbjct: 254 SDKMMNNNYDCPLPEEET---------NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304
Query: 185 VGTLHNLSHHR------QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEG 238
G L NL+ + L K G+P + +LL S V+ + L N+ H
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364
Query: 239 SKMAVRLAGG--LQKMVLLLGRNNVKFLAIVTDC--LQILAYGNQESKLIILASQGPVEL 294
++ + + G + + + C ++ L + +S +
Sbjct: 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424
Query: 295 VRIMRSYDYEKLLWCTSRVLKVL 317
+ + RS K +L +
Sbjct: 425 INLCRSSASPKAAEAARLLLSDM 447
Score = 61.8 bits (149), Expect = 5e-10
Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 32/267 (11%)
Query: 3 MVAALVHAISNS-----NDLETTKGAVGTLHNLSHH----RQGLLAIFKSGGIPALVKLL 53
++ +L+ + N D ++ + + LHNLS+ + A +
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245
Query: 54 SKTLVTASSNNTLILQDDADLATRA--------------IPELIKLLNDEDQDD----AD 95
S + S+ + D L I + L+ +D
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305
Query: 96 LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASR 155
A + + L++ L + +P++ +LL + VV A ++ +S+
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365
Query: 156 HAIMNS--PQMVAALVHAISNSNDL-ETTKGAVGTLHNLSH-HRQGLLAIFKSGGIPALV 211
+ N P++ L N+++ + A T+ NL Q F S + ++
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425
Query: 212 KLL-SSPVESVLFYAITTLHNLLLHQE 237
L SS A L ++ +E
Sbjct: 426 NLCRSSASPKAAEAARLLLSDMWSSKE 452
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 126 bits (319), Expect = 9e-32
Identities = 63/335 (18%), Positives = 113/335 (33%), Gaps = 48/335 (14%)
Query: 103 ELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS- 161
E I+ + + + + + + + + A ++ +LS E RHA+
Sbjct: 14 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG 73
Query: 162 --PQMVAAL------VHAISNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALV 211
+ L ++ + + A L NL+ G + ALV
Sbjct: 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133
Query: 212 KLLSSPVESVLFYAITTLHNL-LLHQEGSKMAVRLAGGLQKMV-LLLGRNNVKFLAIVTD 269
L S E + + L NL SK +R G ++ ++ L L V
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193
Query: 270 CLQILAYGNQESKLIILASQGPVE-LVRIMRSYDY-------EKLLWCTSRVLKVLSVCS 321
L L+ E+K I A G + LV + E V +++
Sbjct: 194 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253
Query: 322 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAG 381
++ + E +Q L HL S +V N TL NLS
Sbjct: 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS---------------------- 291
Query: 382 LLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV 416
A++ + E + GA + L +L+HS+++ +
Sbjct: 292 -----ARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321
Score = 116 bits (293), Expect = 2e-28
Identities = 57/305 (18%), Positives = 100/305 (32%), Gaps = 24/305 (7%)
Query: 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNS---PQMVAAL- 540
+ + + + + + + A ++ +LS E RHA+ + L
Sbjct: 24 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQ 83
Query: 541 -----VHAISNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLSSPVESV 593
++ + + A L NL+ G + ALV L S E +
Sbjct: 84 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 143
Query: 594 LFYAITTLHNL-LLHQEGSKMAVRLAGGLQKMV-LLLGRNNVKFLAIVTDCLQILAYGNQ 651
+ L NL SK +R G ++ ++ L L V L L+
Sbjct: 144 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203
Query: 652 ESKLIILASQGPVE-LVRIMRSYDY-------EKLLWCTSRVLKVLSVCSSNKPAIVEAG 703
E+K I A G + LV + E V +++ ++ + E
Sbjct: 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 263
Query: 704 GMQALAMHLGHPSQRLVQNCLWTLRNLS---DAGTKVDGLESLLQSLVQLLASQDINVIT 760
+Q L HL S +V N TL NLS + + L L+ S+ +
Sbjct: 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323
Query: 761 CAAGV 765
+A
Sbjct: 324 GSAAA 328
Score = 115 bits (289), Expect = 7e-28
Identities = 59/408 (14%), Positives = 122/408 (29%), Gaps = 95/408 (23%)
Query: 152 EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALV 211
E + + + + AV L LS + A+ + GG+ A+
Sbjct: 21 ETCWEWQEAHEPGMDQDKNPMPAPVE-HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79
Query: 212 KLLSSPVE-----------SVLFYAITTLHNLLLHQEGSKMAV-RLAGGLQKMVLLLGRN 259
+LL E ++ YA L NL +K + + G ++ +V L
Sbjct: 80 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139
Query: 260 NVKFLAIVTDCLQILAYG-NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLS 318
+ ++ L+ L++ + SK + L+ E L L LS
Sbjct: 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199
Query: 319 V-CSSNKPAIV-EAGGMQALAMHLGHPSQ----RLVQNCLWTLRNLSDAGTKVSLLFNEI 372
C+ NK I G + L L + SQ ++++ LRN+S
Sbjct: 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL----------- 248
Query: 373 ENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKI 432
+A +++ + + L L S +
Sbjct: 249 -------------IATNEDHRQILRENNCLQTLLQHLKSHSL------------------ 277
Query: 433 NIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLAT 492
I + L+ + + A+ ++
Sbjct: 278 TIVSNAC----------------------GTLWNLSARNPKDQEALWDM----------- 304
Query: 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAAL 540
A+ L L++ + +++ +A + L +++ N ++L
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352
Score = 106 bits (266), Expect = 6e-25
Identities = 54/368 (14%), Positives = 106/368 (28%), Gaps = 78/368 (21%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSN 63
+ + + + AV L LS + A+ + GG+ A+ +LL
Sbjct: 34 MDQDKNPMPAPVE-HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 92
Query: 64 NTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAI 123
N A A L N + + ++ +
Sbjct: 93 NDHYSITLRRYAGMA------LTN-----------------LTFGDVANKATLCSMKGCM 129
Query: 124 PELIKLLNDEDQVVVSQAAMMVHQLSKK--EASRHAIMNSPQMVAALVHAISNSNDLETT 181
L+ L E + + A ++ LS + S+ + V AL+ T
Sbjct: 130 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTL 188
Query: 182 KGAVGTLHNLSHHRQGLLAIF--KSGGIPALVKLLSSPVES----VLFYAITTLHNLLLH 235
K + L NLS H A G + LV L+ ++ ++ L N+
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 236 QEGS---KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPV 292
+ + +R LQ ++ L +++ ++ L L+ N +
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------------ 296
Query: 293 ELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 352
++ A+ + G + L + + +
Sbjct: 297 ------------------------------DQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326
Query: 353 WTLRNLSD 360
LRNL
Sbjct: 327 AALRNLMA 334
Score = 96.5 bits (240), Expect = 2e-21
Identities = 58/333 (17%), Positives = 115/333 (34%), Gaps = 47/333 (14%)
Query: 644 QILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAG 703
QI AY + G + M + ++ VL LS ++ A+ E G
Sbjct: 15 QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVC-VLMKLSFDEEHRHAMNELG 73
Query: 704 GMQALA-----------MHLGHPSQRLVQNCLWTLRNLS--DAGTK--VDGLESLLQSLV 748
G+QA+A + H S L + L NL+ D K + ++ +++LV
Sbjct: 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133
Query: 749 QLLASQDINVITCAAGV--------------TVCQVGGVEALVQTIVNAGDREEITE--- 791
L S+ ++ A V T+ +VG V+AL++ + +
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193
Query: 792 -----PADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGF 846
A + N + VD + V T + +
Sbjct: 194 ALWNLSAHCTEN--KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251
Query: 847 TQD-QVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYG 905
+D + + + ++ L+Q + + I A L +L++R+ + Q A+
Sbjct: 252 NEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKD---QEALWDMGA 306
Query: 906 IQTIVNLLNPPSRWPLVKAVIGLIRNLALCQAN 938
+ + NL++ + + +RNL +
Sbjct: 307 VSMLKNLIHSKHK-MIAMGSAAALRNLMANRPA 338
Score = 93.0 bits (231), Expect = 2e-20
Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 26/263 (9%)
Query: 494 AIPELIKLL-----------NDEDQVVVSQAAMMVHQLSK-KEASRHAIMNSPQMVAALV 541
+ + +LL + + A M + L+ A++ + + + ALV
Sbjct: 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133
Query: 542 HAISNSNDLETTKGAVGTLHNLSHHRQGL--LAIFKSGGIPALVKLL-SSPVESVLFYAI 598
+ S + + L NLS + + G + AL++ ES L +
Sbjct: 134 AQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192
Query: 599 TTLHNLLLHQEGSKMA-VRLAGGLQKMV-LLLGRNNVKFLAIVTDCLQILAY------GN 650
+ L NL H +K + G L +V L R+ LAI+ IL N
Sbjct: 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252
Query: 651 QESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSV-CSSNKPAIVEAGGMQALA 709
++ + I+ + L++ ++S+ ++ L LS ++ A+ + G + L
Sbjct: 253 EDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311
Query: 710 MHLGHPSQRLVQNCLWTLRNLSD 732
+ + + LRNL
Sbjct: 312 NLIHSKHKMIAMGSAAALRNLMA 334
Score = 75.3 bits (185), Expect = 2e-14
Identities = 50/354 (14%), Positives = 111/354 (31%), Gaps = 37/354 (10%)
Query: 329 EAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--VSLLFNEIENIQRVAAGLLCEL 386
+ L + W + + G + + +E+ A +L +L
Sbjct: 6 HHHMLHLLEQIRAYC------ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 59
Query: 387 AQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKI----NIHRGCLMFP 442
+ D+E + G + +LL E + + + N+ G +
Sbjct: 60 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119
Query: 443 ETLEEGIEIPSTQFDTAQPTAVQRLTEPSQ-MLKHAVVNLINYQDDADLATR-------A 494
TL V +L S+ + + L N AD+ ++ +
Sbjct: 120 ATLC--------SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171
Query: 495 IPELIKLLND-EDQVVVSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISN---SND 549
+ L++ + + + + + LS ++ I +A LV ++ +N
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231
Query: 550 LETTKGAVGTLHNLSH----HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLL 605
L + G L N+S + + ++ + L++ L S +++ A TL NL
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291
Query: 606 LHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 659
+ A+ G + + L+ + L+ L
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345
Score = 72.6 bits (178), Expect = 1e-13
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 857 GGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPP 916
G + ALV + + E++ + LR+L+ R ++ +R ++ ++
Sbjct: 127 GCMRALVAQL--KSESEDLQQVIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALEV 182
Query: 917 SRWPLVKAVIGLIRNLA-LCQANHAPL-REYGAIHLLVILLNRAFTDTQR 964
+ +K+V+ + NL+ C N A + GA+ LV L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232
Score = 54.9 bits (132), Expect = 6e-08
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 20/183 (10%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF--KSGGIPALVKLLSKTL---- 57
V AL+ T K + L NLS H A G + LV L+
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231
Query: 58 -------VTASSNNTLILQDDADLATR-----AIPELIKLLNDEDQDDADLATRAIPELI 105
N + ++ + D + L++ L A + L
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291
Query: 106 KLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMV 165
+ +A A+ L L++ + +++ +A + L +++ N
Sbjct: 292 --ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPG 349
Query: 166 AAL 168
++L
Sbjct: 350 SSL 352
Score = 48.7 bits (116), Expect = 5e-06
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 857 GGVEALVQTIVNA--GDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLN 914
G + LV T+ + I E LR+++S +E + +R N +QT++ L
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 915 PPSRWPLVKAVIGLIRNL-ALCQANHAPLREYGAIHLLVILLNRAFTDTQRVSRTGLF 971
S +V G + NL A + L + GA+ +L L++ S L
Sbjct: 274 SHSL-TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330
Score = 43.3 bits (102), Expect = 3e-04
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 850 QVTVCQVGGVEALVQ---------TIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAV 900
+ + ++GG++A+ + + N + A AL +LT +
Sbjct: 66 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLC 123
Query: 901 RLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLAL--CQANHAPLREYGAIHLLVILLNRA 958
+ ++ +V L S ++RNL+ + LRE G++ L+
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIA-SVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182
Score = 39.1 bits (91), Expect = 0.005
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 17/127 (13%)
Query: 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSH----HRQGLLAIFKSGGIPALVKLLSKT 56
+ + + S +N L + G L N+S + + ++ + L++ L
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-- 273
Query: 57 LVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDA 116
S + T++ A + L + +A A+ L L++ + + A
Sbjct: 274 ----SHSLTIVSN-----ACGTLWNLS--ARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 322
Query: 117 DLATRAI 123
+ A+
Sbjct: 323 MGSAAAL 329
Score = 36.0 bits (83), Expect = 0.060
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 848 QDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGI 906
+DQ + +G V L I + I + ALR+L + N + +
Sbjct: 296 KDQEALWDMGAVSMLKNLI--HSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352
Score = 33.7 bits (77), Expect = 0.30
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 880 VCALRHLTS-RHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQAN 938
L L R + G+ N + P + AV ++ L+ + +
Sbjct: 7 HHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV-CVLMKLSFDEEH 65
Query: 939 HAPLREYGAIHLLVILL 955
+ E G + + LL
Sbjct: 66 RHAMNELGGLQAIAELL 82
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 105 bits (264), Expect = 1e-25
Identities = 30/216 (13%), Positives = 72/216 (33%), Gaps = 17/216 (7%)
Query: 207 IPALVKLLSS--PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFL 264
+ V +L + + S + A T + + + ++ V G+ K++ LL N
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 265 AIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 324
V L+ L + + ++KL + G L+++++ + + +L LS K
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 325 PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLC 384
++ + L ++ ++ W + A + +I G L
Sbjct: 130 NLMI-TEALLTLTENI------IIPFSGWPEGDYPKANGLLDF------DIFYNVTGCLR 176
Query: 385 ELAQDKEGAETI--EAEGATAPLTDLLHSRNEGVEI 418
++ +G L + +
Sbjct: 177 NMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQP 212
Score = 103 bits (259), Expect = 4e-25
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)
Query: 579 IPALVKLLSS--PVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFL 636
+ V +L + + S + A T + + + ++ V G+ K++ LL N
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 637 AIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 696
V L+ L + + ++KL + G L+++++ + + +L LS K
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 697 PAIVEAGGMQALAMHL----------------GHPSQRLVQNCLWTLRNLSDAG----TK 736
++ + L ++ G + N LRN+S AG
Sbjct: 130 NLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188
Query: 737 VDGLESLLQSLVQLLASQDINVITCAAGVTVC 768
+ + L+ SLV + + C
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDDKATENC 220
Score = 78.8 bits (194), Expect = 2e-16
Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 26/221 (11%)
Query: 534 PQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSSPVES 592
+ V+ L ++ A + + + + + GI L++LL E
Sbjct: 11 ERAVSMLE---ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67
Query: 593 VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN-NVKFLAIVTDCLQILAYGNQ 651
V L NL+ +K+ V G+ +++ +L + +++ +T L L+ ++
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 652 ESKLIILA-------------SQGPVELVRIMRSYDYEKLLWCTSRVLKVLS-VCSSNKP 697
L+I S P + + + L+ +S + +
Sbjct: 128 LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK 187
Query: 698 AIVEAGGMQALAMHL-------GHPSQRLVQNCLWTLRNLS 731
A+ G+ +H P + +NC+ L NLS
Sbjct: 188 AMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
Score = 64.2 bits (156), Expect = 2e-11
Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 21/189 (11%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKL-LNDEDQDDADLATRAIPELIKLLNDEDQVV 137
+ + +L + + ++ A + + R I +L++LL +++ V
Sbjct: 10 LERAVSMLEADHMLPSRIS-AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68
Query: 138 VSQAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQ 196
+ L + ++ + V L+ + + DLET K G L NLS + +
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 197 GLLAIFKSGGIPALVKLLSSPV----------------ESVLFYAITTLHNLLLHQEGSK 240
+ + + L + + P + + L N+ +
Sbjct: 128 LKNLM-ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186
Query: 241 MAVRLAGGL 249
A+R GL
Sbjct: 187 KAMRRCDGL 195
Score = 55.3 bits (133), Expect = 2e-08
Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 28/187 (14%)
Query: 461 PTAVQRLTEPSQMLKH------AVVNLINYQDDADLATR---AIPELIKLLNDEDQVVVS 511
AV L + + + + +A I +L++LL +++ V
Sbjct: 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQR 70
Query: 512 QAAMMVHQLSKK-EASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 570
+ L + ++ + V L+ + + DLET K G L NLS + +
Sbjct: 71 AVCGALRNLVFEDNDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 571 LAIFKSGGIPALVKLLSSPV----------------ESVLFYAITTLHNLLLHQEGSKMA 614
+ + + L + + P + + L N+ + A
Sbjct: 130 NLM-ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188
Query: 615 VRLAGGL 621
+R GL
Sbjct: 189 MRRCDGL 195
Score = 54.6 bits (131), Expect = 3e-08
Identities = 33/198 (16%), Positives = 70/198 (35%), Gaps = 28/198 (14%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLS-HHRQGLLAIFKSGGIPALVKLLSKTLVTASS 62
+ L+ + + + + G L NL L + + G+P L+++L +T
Sbjct: 54 ILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT------ 106
Query: 63 NNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRA 122
D + + L L +++ + + T A+ L + + +
Sbjct: 107 -------RDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENII------IPFSGWP 152
Query: 123 IPELIKLLNDEDQVVVSQAAMMVHQLS-KKEASRHAIMNSPQMVAALVHAISNSN----- 176
+ K D + + +S R A+ ++ +LVH + +
Sbjct: 153 EGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQP 212
Query: 177 DLETTKGAVGTLHNLSHH 194
D + T+ V LHNLS+
Sbjct: 213 DDKATENCVCILHNLSYQ 230
Score = 54.2 bits (130), Expect = 4e-08
Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 35/241 (14%)
Query: 2 EMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLSKTLVTA 60
V+ L ++ A + + + + + GI L++LL
Sbjct: 12 RAVSMLE---ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL------- 61
Query: 61 SSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND-EDQDDADLA 119
N + + A+ L+ D D +P L+++L D +
Sbjct: 62 KVQNEDVQRA----VCGALRNLVF--EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQI 115
Query: 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE 179
T + L ND+ + ++ A++ + + I+ + D +
Sbjct: 116 TGLLWNL--SSNDKLKNLMITEALLTL-------TENIIIPFSGWPEGDYPKANGLLDFD 166
Query: 180 TTKGAVGTLHNLSHHR-QGLLAIFKSGG-IPALVKLLSSPVESVLF------YAITTLHN 231
G L N+S G A+ + G I +LV + + + LHN
Sbjct: 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226
Query: 232 L 232
L
Sbjct: 227 L 227
Score = 52.6 bits (126), Expect = 1e-07
Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 43/231 (18%)
Query: 703 GGMQALAMHL---------GHPSQRLVQNCLWTLRNLS---DAGTKVDGLESLLQSLVQL 750
G + M L H + +++ K + L+QL
Sbjct: 1 GSNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60
Query: 751 LASQDINVITCAAG-------------VTVCQVGGVEALVQTIVNAGD---REEITEPAD 794
L Q+ +V G + V ++ GV L+Q + D +++IT
Sbjct: 61 LKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120
Query: 795 HSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQ---------- 844
+ + + +N ++ + + +G E F
Sbjct: 121 NLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180
Query: 845 GFTQDQVTVCQVGG-VEALVQTIVNAGDREE----ITEPAVCALRHLTSRH 890
+ + + G +++LV + + TE VC L +L+ +
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231
Score = 43.4 bits (102), Expect = 2e-04
Identities = 36/266 (13%), Positives = 75/266 (28%), Gaps = 66/266 (24%)
Query: 331 GGMQALAMHL---------GHPSQRLVQNCLWTLRNLS--DAGTK------------VSL 367
G + M L H + +++ + + + L
Sbjct: 1 GSNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60
Query: 368 LFNEIENIQRVAAGLLCELA-QDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKI 426
L + E++QR G L L +D + + L +L +E Q +
Sbjct: 61 LKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ-TRDLETKKQITGLL 119
Query: 427 FKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQD 486
+ + + + ++ A T + + P
Sbjct: 120 WNLSSNDKLKNLMI----------------TEALLTLTENIIIP---------------- 147
Query: 487 DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLS-KKEASRHAIMNSPQMVAALVHAIS 545
+ + K D + + +S R A+ ++ +LVH +
Sbjct: 148 ---FSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
Query: 546 NSN-----DLETTKGAVGTLHNLSHH 566
+ D + T+ V LHNLS+
Sbjct: 205 GTIADYQPDDKATENCVCILHNLSYQ 230
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 859 VEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSR 918
+E V + A ++H + A+ V GI ++ LL +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECF---QKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 919 WPLVKAVIGLIRNLAL-CQANHAPLREYGAIHLLVILLNR 957
G +RNL N + E + L+ +L +
Sbjct: 67 DVQRAVC-GALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105
Score = 30.7 bits (69), Expect = 2.1
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 906 IQTIVNLLNPPSRWPLVK-AVIGLIRNLALCQA-NHAPLREYGAIHLLVILLNRAFTDTQ 963
++ V++L P A I++ ++ + + I L+ LL D Q
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 964 R 964
R
Sbjct: 70 R 70
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 107 bits (268), Expect = 5e-24
Identities = 105/809 (12%), Positives = 250/809 (30%), Gaps = 93/809 (11%)
Query: 10 AISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQ 69
+ ++ + A L L+ + G ++K I + L + + +
Sbjct: 15 TFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV-----EKDQDIYVN 69
Query: 70 DDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKL 129
+ L + N ++ L +P +++L+ + ++ A + ++
Sbjct: 70 -----MVHLVAALCE--NSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNA 122
Query: 130 LNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLH 189
L+ S+ + + +E ++ LV++I++ + V L
Sbjct: 123 LSGLKNKPDSKPDKELCTRNNREI--------DTLLTCLVYSITDRTISGAARDGVIELI 174
Query: 190 NLSHHRQGL---LAIFKSGGIPALVKLLSSPVE-----------SVLFYAITTLHNLLLH 235
+ H L + + G+ L+ + S + S A L + +
Sbjct: 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYEN 234
Query: 236 QEGSKMAVRLAGGLQKMVL-LLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVEL 294
+ R + + + L +++ VT + L G + ++A +G +++
Sbjct: 235 MYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQM 294
Query: 295 VRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWT 354
+ M + D E L S A+ E G+ L + + L
Sbjct: 295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ-GVDILKRLYHSKNDGIRVRALVG 353
Query: 355 LRNLS----DAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLH 410
L L + L + +DK+ A L
Sbjct: 354 LCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413
Query: 411 SRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEP 470
+ + I + + + + G +
Sbjct: 414 EKLIEDKASIHALMDLARGGNQSCLYGVVT------------------------------ 443
Query: 471 SQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 530
VNL N + + +PE+I+L Q + + + K R +
Sbjct: 444 ------TFVNLCNAYEKQE----MLPEMIELAKFAKQHIPEEHELDDVDFINK---RITV 490
Query: 531 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPV 590
+ + + AL A++ + + + L+ + ++ + + GG+ AL+++
Sbjct: 491 LANEGITTALC-ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT 549
Query: 591 ESVLFYAITTLHNLLLHQEGSKM--AVRLAGGLQKMVLLLGRNNVKFLAIVT-DCLQILA 647
E +A L + + R ++ ++ LL ++ + L LA
Sbjct: 550 EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609
Query: 648 YGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGG-MQ 706
N+ + I+ QG ++ + D+ L ++ L L + ++
Sbjct: 610 SMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668
Query: 707 ALAMHLGHPSQRLVQNCLWTLRNLSD----AGTKVDGLESLLQSLVQLLASQDINVITCA 762
LA+ + C L ++ K+ + S L L L+A+ V
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728
Query: 763 AGVTVCQVGGVEALVQTIVNAGDREEITE 791
+ + + E + + + E ++
Sbjct: 729 IVIILNMINAGEEIAKKLFETDIMELLSG 757
Score = 104 bits (259), Expect = 6e-23
Identities = 100/821 (12%), Positives = 240/821 (29%), Gaps = 88/821 (10%)
Query: 171 AISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPV-ESVLFYAITTL 229
+ ++ + A L L+ + G ++K I + L + + + +
Sbjct: 15 TFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLV 74
Query: 230 HNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQ 289
L + V G+ + +L + + ++ CLQ + N S L
Sbjct: 75 AALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTIL--NALSGLKNKPDS 132
Query: 290 GPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQ 349
P + + + + + LL C + ++ + + ++E L + +
Sbjct: 133 KPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEI 192
Query: 350 NCLWTLRNLSDA--GTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTD 407
L L ++ K + + +A+ L + ++ E T + +
Sbjct: 193 RGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE--AKARFTDQIDE 250
Query: 408 LLHSRNE--GVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQ 465
+ + +E ++ I + L+ G ++ + + +
Sbjct: 251 YIKDKLLAPDMESKVRVTVAI-----------TALLNGPLDVGNQVVAR--EGILQMILA 297
Query: 466 RLTEPSQMLKHAVVNLINYQDD-----ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQL 520
T ++ + + L + + L +L + ++ + +A + + +L
Sbjct: 298 MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKL 357
Query: 521 SKKEASRHAIMNSPQ-MVAALVHAI-----SNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574
AI L A D + + A L L+ + +
Sbjct: 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417
Query: 575 KSGG-IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNV 633
+ I AL+ L +S L+ +TT NL E +M + L K
Sbjct: 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMI-ELAKFAKQHIPEEH 476
Query: 634 KFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCS 693
+ + + ++ L + ++ +RVL +
Sbjct: 477 ELDDVDF---------INKRITVLANEGITTALCALAKTES-HNSQELIARVLNAVCGLK 526
Query: 694 SNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS-----DAGTKVDGLESLLQSLV 748
+ +V+ GG++AL +++ ++ L + + +++ L+
Sbjct: 527 ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586
Query: 749 QLLASQDINVITCAAGVTVCQVGGV-EALVQTIVNAGDREEITEPADHSVNMWQQQNYLV 807
LL + + + + + + E++ Q I+ +I +
Sbjct: 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646
Query: 808 DSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVTVCQVGGVEALVQTIV 867
+ + V+ L +
Sbjct: 647 LCNLVMSEDVIKMFEGNN-------------------------------DRVKFLAL-LC 674
Query: 868 NAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIG 927
D EE AL +TS + + + + + + L+ PS + I
Sbjct: 675 EDED-EETATACAGALAIITSVS--VKCCEKILAIASWLDILHTLIANPSP-AVQHRGIV 730
Query: 928 LIRNLALCQANHAP-LREYGAIHLLVILLNRAFTDTQRVSR 967
+I N+ A L E + LL L +
Sbjct: 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKARE 771
Score = 96.8 bits (240), Expect = 1e-20
Identities = 83/777 (10%), Positives = 227/777 (29%), Gaps = 94/777 (12%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLSKTLVTASS 62
+A + D + V + L + + + G+P +++L + S
Sbjct: 51 IAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVS 110
Query: 63 NNTLILQ-----------------------DDADLATRAIPELIKLLNDEDQDDADLATR 99
LQ + + L+ + D
Sbjct: 111 TAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDR-TISGAARDG 169
Query: 100 AIPELIKLLNDEDQDDAD--LATRAIPELIKL------LNDEDQVVVS-----QAAMMVH 146
I + + ++ + A+ + R + L+ + E + ++ A++ +
Sbjct: 170 VIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLA 229
Query: 147 QLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL--SHHRQGLLAIFKS 204
++ + A + + + D+E+ + L G + +
Sbjct: 230 RIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVARE 289
Query: 205 GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFL 264
G + ++ + ++ E A L ++ +K + K + + ++
Sbjct: 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVR 349
Query: 265 AIVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNK 324
A+V C ++ +YG Q++ + ++L R + + K
Sbjct: 350 ALVGLC-KLGSYGGQDAAIRPFGDGAALKLAEACRRF-----------------LIKPGK 391
Query: 325 PAIVEAGGMQALAMHLGHP--SQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGL 382
+ LA ++L+++ ++ L + L ++
Sbjct: 392 DKDIRRWAADGLAYLTLDAECKEKLIEDKA-SIHAL------MDLARGGNQSCLYGVVTT 444
Query: 383 LCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFP 442
L E E + A ++ + +I +
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL------------- 491
Query: 443 ETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATR--AIPELIK 500
EGI + Q +++ + + ++ + + L++
Sbjct: 492 --ANEGITTALCALAKTESHNSQ------ELIARVLNAVCGLKELRGKVVQEGGVKALLR 543
Query: 501 LLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQM--VAALVHAISNSNDLETTKGAVG 558
+ + + A + ++ + + + L++ + ++
Sbjct: 544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603
Query: 559 TLHNLSHHRQGL-LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL 617
L NL+ + + I K G+ + L + A L NL++ ++ KM
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 618 AGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVE-LVRIMRSYDYE 676
++ + LL + + L I+ + + ILA ++ L ++ +
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723
Query: 677 KLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA 733
+L +++ + E M+ L+ P + + L+ A
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780
Score = 62.2 bits (150), Expect = 6e-10
Identities = 90/639 (14%), Positives = 205/639 (32%), Gaps = 52/639 (8%)
Query: 367 LLFNEIENIQ--RVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVH 424
L F+ I R AA L LA+++ GAE + + A + L + +I + VH
Sbjct: 14 LTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQ-DIYVNMVH 72
Query: 425 KIFKIHKINIHRGCLMF----PETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVN 480
+ + + ++ R + ++ + +Q + LK+ +
Sbjct: 73 LVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDS 132
Query: 481 LINYQDDADLA---TRAIPELIKLLNDEDQVVVSQAAMM------VHQLSKKEASRHAIM 531
+ + + L+ + D ++ ++ VH + + A R +
Sbjct: 133 KPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEI 192
Query: 532 NSPQ---MVAALVHAISNSNDLETTKG----AVGTLHNLSHHRQGLLA--IFKSGGIPAL 582
V + + + ++ T A L + + A F +
Sbjct: 193 RGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI 252
Query: 583 VKLLSSPVESVLFYAITTLHNLLL-HQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTD 641
L +P + LL + V G LQ ++ + ++ + +
Sbjct: 253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312
Query: 642 CLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSN-KPAIV 700
CL + ++K + QG L R+ S + + + K+ S +
Sbjct: 313 CLIAASSKKDKAKAL--CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370
Query: 701 EAGGMQALAMHL------GHPSQRLVQNCLWTLRNLSDAGTKVDGL---ESLLQSLVQLL 751
G LA + + + L L+ + L ++ + +L+ L
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA 430
Query: 752 ASQDINVITCAAGVTV--CQVGGVEALVQTIVNAGDREEITEPADHSVNMWQQQNYLVDS 809
+ + + V C + ++ ++ + P +H ++ N +
Sbjct: 431 RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490
Query: 810 GIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQ---VTVCQVGGVEALVQTI 866
+ G+ +L + + E+ + V Q GGV+AL++ +
Sbjct: 491 LANEGI---TTALCALAKTESHNSQ--ELIARVLNAVCGLKELRGKVVQEGGVKALLR-M 544
Query: 867 VNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVI 926
G E+ A AL + + E++ + R I+ ++NLL +
Sbjct: 545 ALEGT-EKGKRHATQALARIGI-TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602
Query: 927 GLIRNLA-LCQANHAPLREYGAIHLLVILLNRAFTDTQR 964
+ NLA + ++ + + + + L R
Sbjct: 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 87.4 bits (216), Expect = 7e-19
Identities = 42/269 (15%), Positives = 86/269 (31%), Gaps = 22/269 (8%)
Query: 25 GTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIK 84
G+ H+ HH GL+ + + L+ P +
Sbjct: 1 GSSHHHHHHSSGLVPR-------------GSHMRGQRGEVEQMKSCLRVLSQPMPPTAGE 47
Query: 85 LLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATR---AIPELIKLLNDEDQVVVSQA 141
DQ + + A + +L E+ D+A + + + L + +A
Sbjct: 48 AEQAADQQEREGALELLADLC-----ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 142 AMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNL-SHHRQGLLA 200
A ++ S+ A+ + + L+ + A+ + L GLL
Sbjct: 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162
Query: 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 260
+ G L++ + V+ + + L NLL+ K + G +Q++V L+ +
Sbjct: 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 222
Query: 261 VKFLAIVTDCLQILAYGNQESKLIILASQ 289
F V L L + +
Sbjct: 223 SPFHEHVLGALCSLVTDFPQGVRECREPE 251
Score = 83.5 bits (206), Expect = 2e-17
Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 9/227 (3%)
Query: 442 PETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATR------AI 495
E ++ + + S A Q + Q + A+ L + ++ D A
Sbjct: 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQ--QEREGALELLADLCENMDNAADFCQLSGMH 84
Query: 496 PELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKG 555
+ + L + +AA ++ S+ A+ + + L+ +
Sbjct: 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 144
Query: 556 AVGTLHNL-SHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMA 614
A+ + L GLL + G L++ + V+ + + L NLL+ K
Sbjct: 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 204
Query: 615 VRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQ 661
+ G +Q++V L+ + F V L L + +
Sbjct: 205 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
Score = 78.5 bits (193), Expect = 7e-16
Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 10/231 (4%)
Query: 535 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALV-KLLSSPVESV 593
Q + + D + +GA+ L +L + + G+ LV + L + +
Sbjct: 39 QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98
Query: 594 LFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQE 652
+ A + + + V G L+K++ LL R + L +
Sbjct: 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158
Query: 653 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL 712
L L G L+R M+ + + + +L +K + G +Q L +
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218
Query: 713 GHPSQRLVQNCLWTLRNLS--------DAGTKVDGLESLLQSLVQLLASQD 755
++ L L +L + GLE LL+ QLL +
Sbjct: 219 RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269
Score = 76.6 bits (188), Expect = 3e-15
Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 2/231 (0%)
Query: 163 QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALV-KLLSSPVESV 221
Q + + D + +GA+ L +L + + G+ LV + L + +
Sbjct: 39 QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98
Query: 222 LFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR-NNVKFLAIVTDCLQILAYGNQE 280
+ A + + + V G L+K++ LL R + L +
Sbjct: 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158
Query: 281 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL 340
L L G L+R M+ + + + +L +K + G +Q L +
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218
Query: 341 GHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKE 391
++ L L +L + E E C+L Q E
Sbjct: 219 RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269
Score = 40.0 bits (93), Expect = 0.002
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 850 QVTVCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTI 909
Q V +G + L++ + + + A+ A+ L E E G +
Sbjct: 117 QEQVLGLGALRKLLRLLDRDAC-DTVRVKALFAISCLVR---EQEAGLLQFLRLDGFSVL 172
Query: 910 VNLLNPPSRWPLVKAVIGLIRNLALCQANHAPLREYGAIHLLVILLNRAFTDTQR 964
+ + + VK+ L L + L G + LV L+ +
Sbjct: 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
Score = 39.6 bits (92), Expect = 0.003
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 853 VCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVESEMAQNAVRLNYGIQTIVNL 912
CQ+ G+ LV + AG + A + + Q V ++ ++ L
Sbjct: 77 FCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQN---VAAIQEQVLGLGALRKLLRL 132
Query: 913 LNPPSRWPLVKAVIGLIRNLAL-CQANHAPLREYGAIHLLVILLNRAFTDTQR 964
L+ + + + I L +A +L+ + + +
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185
Score = 31.5 bits (71), Expect = 1.2
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL-LAIFKSGGIPALVKLLS-------- 54
+ L+ A+ + + L NL + G + LV L+
Sbjct: 169 FSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
Query: 55 ------KTLVTASSNNTLILQDDADLATRAIPELIKLLNDED--QDDADLATRAIPELIK 106
+LVT ++ + +LL + Q++ + + +
Sbjct: 228 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287
Query: 107 LLNDEDQD 114
D+ D
Sbjct: 288 SPADDSMD 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 1e-11
Identities = 114/763 (14%), Positives = 229/763 (30%), Gaps = 252/763 (33%)
Query: 16 DLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS--------KTLVTASSNNTLI 67
D ET + + + +L++F A V K++++ + +I
Sbjct: 8 DFETGE--------HQYQYKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 68 LQDDADLATRAIPELI---------KLLNDEDQDDAD-LATRAIPELIKLLNDEDQDDAD 117
+ DA T + + K + + + + L + + E + +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP--------IKTEQRQPSM 107
Query: 118 LATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND 177
+ I + +L ND +K SR Q L A+
Sbjct: 108 MTRMYIEQRDRLYND------------NQVFAKYNVSR------LQPYLKLRQALLE--- 146
Query: 178 LETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVK--LLSSPVESVLFYAITTLHNLLLH 235
L K + + G+L K+ + LS V+ + + I L L
Sbjct: 147 LRPAKNVL--ID-------GVLGSGKT----WVALDVCLSYKVQCKMDFKI---FWLNLK 190
Query: 236 QEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELV 295
S V L+ + LL + + + + + S + + EL
Sbjct: 191 NCNSPETV-----LEMLQKLLYQIDPNWTS----------RSDHSSNIKLRIHSIQAELR 235
Query: 296 RIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTL 355
R+++S Y +NCL L
Sbjct: 236 RLLKSKPY---------------------------------------------ENCLLVL 250
Query: 356 RNLSDAGT--------KVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTD 407
N+ +A K+ L + ++A ++ D + LT
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH----------SMTLTP 300
Query: 408 LLHSRNEGVEILIQGVHKIFK-----IHKINIHRGCLMFPETLEEGI-------EIPSTQ 455
+E +L++ + + + N R + E++ +G+ + +
Sbjct: 301 -----DEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 456 FDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPE-LIKLL--NDEDQVVVSQ 512
T +++ L EP++ + L + A IP L+ L+ + V
Sbjct: 355 LTTIIESSLNVL-EPAEY-RKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDV--- 404
Query: 513 AAMMVHQLSKKE-ASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHN--LSHHRQG 569
++V++L K + P+ + +I +L+ LH + H+
Sbjct: 405 -MVVVNKLHKYSLVEKQ-----PKESTISIPSI--YLELKVKLENEYALHRSIVDHYN-- 454
Query: 570 LLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG 629
+ F S L P FY ++ H + + R+ L +MV L
Sbjct: 455 IPKTFDSDD-------LIPPYLDQYFY-----SHIGHHLKNIEHPERMT--LFRMVFL-- 498
Query: 630 RNNVKFLA--IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSY------DYEKLLWC 681
+ +FL I D A G+ + L L + + Y YE+L+
Sbjct: 499 --DFRFLEQKIRHDSTAWNASGSILNTLQQL---------KFYKPYICDNDPKYERLV-- 545
Query: 682 TSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCL 724
+ +L L N ++ L++ L
Sbjct: 546 -NAILDFLPKIEEN---LIC------------SKYTDLLRIAL 572
Score = 47.2 bits (111), Expect = 3e-05
Identities = 70/463 (15%), Positives = 141/463 (30%), Gaps = 141/463 (30%)
Query: 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIP-ALV--------K 51
+EM+ L++ I N + + + + L + KS L+ K
Sbjct: 199 LEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 52 LL------SKTLVTASSNNTLILQDDADLATRAIPE----------------LIKLLNDE 89
K L+T + + D AT L+K L+
Sbjct: 258 AWNAFNLSCKILLT-TRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 90 DQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLS 149
QD +P + N P + ++ A + L+
Sbjct: 315 PQD--------LPREVLTTN--------------PRRLSII----------AESIRDGLA 342
Query: 150 KKEASRHAIMNSPQMVAALVHAISNS-NDLETTKGAVGTLHNLSHHRQGL--LAIF-KSG 205
+ +H +N + L I +S N LE + +R+ L++F S
Sbjct: 343 TWDNWKH--VNCDK----LTTIIESSLNVLEPAE-----------YRKMFDRLSVFPPSA 385
Query: 206 GIPA--LVKLLSSPVESVLFYAITTLHN-LLLHQEGSKMAVRLAGGLQKMVLLLGRNNVK 262
IP L + ++S + + LH L+ ++ + + + + + L + N
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIY-LELKVKLENEY 443
Query: 263 FL-AIVTDCLQIL-AY-GNQESKLII-----------LASQGPVELVRIMRS-Y-DYE-- 304
L + D I + + + L + E + + R + D+
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 305 --KL-----LW-CTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLR 356
K+ W + +L L KP I + + + + N + L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---------NDPKYERLV--NAI--LD 550
Query: 357 NLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAE 399
L L+ ++ ++ R+A ++ A EA
Sbjct: 551 FLPKIEEN--LICSKYTDLLRIA-------LMAEDEAIFEEAH 584
Score = 44.5 bits (104), Expect = 2e-04
Identities = 50/340 (14%), Positives = 107/340 (31%), Gaps = 88/340 (25%)
Query: 468 TEPSQMLKHAVVNLIN-YQDD--ADLATRAIPELIK-LLNDE--DQVV-----VSQAAMM 516
E + ++ ++++ ++D + + + ++ K +L+ E D ++ VS +
Sbjct: 9 FETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 517 VHQLSKKEASRHAIM-------NSPQMVAALVHAISNSNDLETTK--GAVGTLHNLSHHR 567
L K+ N +++ + + T L+N +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQ-- 124
Query: 568 QGLLAIFKSGGIP----------ALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRL 617
+F + AL++L + N+L+ G +
Sbjct: 125 -----VFAKYNVSRLQPYLKLRQALLELRPAK-------------NVLID--G--V---- 158
Query: 618 AGGLQKMVL-LLGRNNVKFLAIVTDCLQI--LAYGNQESKLIILASQGPVELVRIMRSYD 674
G K + L + K + +I L N S P ++ ++
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNS---------PETVLEML---- 202
Query: 675 YEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAG 734
+KLL+ S SSN + + L L + +NCL L N+ +A
Sbjct: 203 -QKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLL---KSKPYENCLLVLLNVQNAK 257
Query: 735 TKVDGLESLLQSLVQLLASQDINVITCAAGVTVCQVGGVE 774
+ L + LL ++ V + T +
Sbjct: 258 A-WNAFN--LSCKI-LLTTRFKQVTDFLSAATTTHISLDH 293
>1dow_B Beta-catenin; four-helix bundle, cell adhesion; 1.80A {Mus
musculus}
Length = 32
Score = 58.2 bits (140), Expect = 2e-11
Identities = 28/32 (87%), Positives = 29/32 (90%)
Query: 460 QPTAVQRLTEPSQMLKHAVVNLINYQDDADLA 491
PT VQRL EPSQMLKHAVVNLINYQDDA+LA
Sbjct: 1 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELA 32
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 58.9 bits (143), Expect = 8e-10
Identities = 45/171 (26%), Positives = 60/171 (35%), Gaps = 40/171 (23%)
Query: 77 RAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDEDQDDADLA-------- 119
RA+ LIK L DED A RA+ LIK L DED A
Sbjct: 50 RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109
Query: 120 -TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178
RA+ LIK L DED V AA + ++ + A V L+ A+ + D
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA-----------VEPLIKALKDE-DG 157
Query: 179 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 229
+ A L + R A+ KL + A+ L
Sbjct: 158 WVRQSAADALGEIGGER----------VRAAMEKLAETGTGFARKVAVNYL 198
Score = 57.0 bits (138), Expect = 4e-09
Identities = 42/174 (24%), Positives = 56/174 (32%), Gaps = 40/174 (22%)
Query: 77 RAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDEDQDDADLA-------- 119
+ IK L D+ A RA+ LIK L DED A
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78
Query: 120 -TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178
RA+ LIK L DED V AA+ + Q+ + A V L+ A+ D
Sbjct: 79 DERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA-----------VEPLIKAL-KDEDW 126
Query: 179 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
A L + R + L+K L V A L +
Sbjct: 127 FVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 49.7 bits (119), Expect = 1e-06
Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 31/140 (22%)
Query: 77 RAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDEDQDDADLA-------- 119
RA+ LIK L DED A RA+ LIK L DED A
Sbjct: 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140
Query: 120 -TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178
RA+ LIK L DED V AA + ++ + AA+
Sbjct: 141 DERAVEPLIKALKDEDGWVRQSAADALGEIGGERV-----------RAAMEKLAETGTGF 189
Query: 179 --ETTKGAVGTLHNLSHHRQ 196
+ + T + +HH
Sbjct: 190 ARKVAVNYLETHKSFNHHHH 209
Score = 40.4 bits (95), Expect = 0.001
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 22/112 (19%)
Query: 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLET 552
+ IK L D+ V AA + L K + + V L+ A+ + D
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAA---YALGK--------IGDERAVEPLIKALKDE-DAWV 66
Query: 553 TKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ A L + R + L+K L V A L +
Sbjct: 67 RRAAADALGQIGDER----------AVEPLIKALKDEDGWVRQSAAVALGQI 108
Score = 38.9 bits (91), Expect = 0.003
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 491 ATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 550
RA+ LIK L DED V AA + ++ + A V L+ A+ + D
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA-----------VEPLIKALKDE-DG 157
Query: 551 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 601
+ A L + R A+ KL + A+ L
Sbjct: 158 WVRQSAADALGEIGGER----------VRAAMEKLAETGTGFARKVAVNYL 198
Score = 38.5 bits (90), Expect = 0.006
Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 26/146 (17%)
Query: 459 AQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVH 518
++ L + S ++ A + D RA+ LIK L DED V AA +
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVEPLIKALKDEDAWVRRAAADALG 75
Query: 519 QLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGG 578
Q+ + A V L+ A+ + D + A L + R
Sbjct: 76 QIGDERA-----------VEPLIKALKDE-DGWVRQSAAVALGQIGDER----------A 113
Query: 579 IPALVKLLSSPVESVLFYAITTLHNL 604
+ L+K L V A L +
Sbjct: 114 VEPLIKALKDEDWFVRIAAAFALGEI 139
Score = 37.3 bits (87), Expect = 0.012
Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 28/149 (18%)
Query: 457 DTAQPTAVQRLTEPSQMLKHAVVN-LINYQDDADLATRAIPELIKLLNDEDQVVVSQAAM 515
+ A ++ L + ++ A + L D+ RA+ LIK L DED V AA+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----RAVEPLIKALKDEDGWVRQSAAV 103
Query: 516 MVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK 575
+ Q+ + A V L+ A+ D A L + R
Sbjct: 104 ALGQIGDERA-----------VEPLIKAL-KDEDWFVRIAAAFALGEIGDER-------- 143
Query: 576 SGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ L+K L V A L +
Sbjct: 144 --AVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 32.3 bits (74), Expect = 0.56
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 491 ATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 550
RA+ LIK L DED V AA + ++ + AA+
Sbjct: 141 DERAVEPLIKALKDEDGWVRQSAADALGEIGGERV-----------RAAMEKLAETGTGF 189
Query: 551 --ETTKGAVGTLHNLSHHRQ 568
+ + T + +HH
Sbjct: 190 ARKVAVNYLETHKSFNHHHH 209
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 58.1 bits (141), Expect = 1e-09
Identities = 45/174 (25%), Positives = 59/174 (33%), Gaps = 40/174 (22%)
Query: 77 RAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDEDQDDADLA-------- 119
RA+ LIK L DED A RA+ LIK L DED A
Sbjct: 45 RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104
Query: 120 -TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178
RA+ LIK L DED V AA + ++ + A V L+ A+ D
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA-----------VEPLIKAL-KDEDG 152
Query: 179 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
+ A L + R A+ KL + A+ L
Sbjct: 153 WVRQSAADALGEIGGER----------VRAAMEKLAETGTGFARKVAVNYLETH 196
Score = 55.8 bits (135), Expect = 8e-09
Identities = 42/174 (24%), Positives = 56/174 (32%), Gaps = 40/174 (22%)
Query: 77 RAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDEDQDDADLA-------- 119
+ IK L D+ A RA+ LIK L DED A
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73
Query: 120 -TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178
RA+ LIK L DED V AA+ + Q+ + A V L+ A+ D
Sbjct: 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA-----------VEPLIKAL-KDEDW 121
Query: 179 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
A L + R + L+K L V A L +
Sbjct: 122 FVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 43.5 bits (103), Expect = 1e-04
Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 75 ATRAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDED---QDDADLA--- 119
RA+ LIK L DED A RA+ LIK L DED + A A
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164
Query: 120 ---TRAIPELIKLLNDEDQVVVSQAAM 143
R + KL A
Sbjct: 165 IGGERVRAAMEKLAETGTGFARKVAVN 191
Score = 40.4 bits (95), Expect = 0.001
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 22/112 (19%)
Query: 493 RAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLET 552
+ IK L D+ V AA + L K + + V L+ A+ + D
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAA---YALGK--------IGDERAVEPLIKALKDE-DAWV 61
Query: 553 TKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ A L + R + L+K L V A L +
Sbjct: 62 RRAAADALGQIGDER----------AVEPLIKALKDEDGWVRQSAAVALGQI 103
Score = 39.2 bits (92), Expect = 0.003
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 22/114 (19%)
Query: 491 ATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 550
RA+ LIK L DED V AA + ++ + A V L+ A+ D
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA-----------VEPLIKAL-KDEDG 152
Query: 551 ETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ A L + R A+ KL + A+ L
Sbjct: 153 WVRQSAADALGEIGGER----------VRAAMEKLAETGTGFARKVAVNYLETH 196
Score = 36.5 bits (85), Expect = 0.019
Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 28/149 (18%)
Query: 457 DTAQPTAVQRLTEPSQMLKHAVVN-LINYQDDADLATRAIPELIKLLNDEDQVVVSQAAM 515
+ A ++ L + ++ A + L D+ RA+ LIK L DED V AA+
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----RAVEPLIKALKDEDGWVRQSAAV 98
Query: 516 MVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFK 575
+ Q+ + A V L+ A+ D A L + R
Sbjct: 99 ALGQIGDERA-----------VEPLIKAL-KDEDWFVRIAAAFALGEIGDER-------- 138
Query: 576 SGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ L+K L V A L +
Sbjct: 139 --AVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 33.8 bits (78), Expect = 0.14
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 75 ATRAIPELIKLLNDED---QDDADLA------TRAIPELIKLLNDEDQDDADLATRAI 123
RA+ LIK L DED + A A R + KL +A +
Sbjct: 136 DERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYL 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 5e-09
Identities = 113/665 (16%), Positives = 192/665 (28%), Gaps = 271/665 (40%)
Query: 68 LQDD--ADL--ATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAI 123
LQ+ L T +DE A+L + + ++ + +
Sbjct: 33 LQEQFNKILPEPTEGFAA-----DDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQV 83
Query: 124 PELIKLLND-EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTK 182
L L + E+ L + HA+ A L+ + +TT
Sbjct: 84 --LNLCLTEFENCY-----------LEGNDI--HAL------AAKLL------QENDTTL 116
Query: 183 GAVGTLHNLSHHRQGLLAIFKS---GGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGS 239
L + + P S LF A+ EG+
Sbjct: 117 VKTKEL---------IKNYITARIMAKRP-----FDKKSNSALFRAV---------GEGN 153
Query: 240 KMAVRLA---GGLQKMVLLLGRNNVKFLAIVTDCLQIL--AYGNQESKLIILASQGPVEL 294
+L GG Q G + F + L+ L Y LI +++ EL
Sbjct: 154 ---AQLVAIFGG-Q------GNTDDYF-----EELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 295 VRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQR-------- 346
+R + D EK+ ++ L +L L +PS
Sbjct: 199 IR--TTLDAEKVF---TQGLNILEW--------------------LENPSNTPDKDYLLS 233
Query: 347 ---------LVQNCLW--TLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAET 395
++Q + T + L G L + ++ + GL+ A
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLL---GFTPGELRSYLKGATGHSQGLV--------TAVA 282
Query: 396 IEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGC---LMFPETLEEGIEIP 452
I AE + S + + +L F I G +P T +P
Sbjct: 283 I-AETDSWE--SFFVSVRKAITVL-------FFI-------GVRCYEAYPNT-----SLP 320
Query: 453 STQFDTAQPTAVQRLTE-----PSQMLKHAVVNL--INYQDDADLATRAIPE----LIKL 501
P+ ++ E PS ML ++ NL QD + +P I L
Sbjct: 321 --------PSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 502 LNDEDQVVVS--QAAM--MVHQLSKKEA------SR---------------------HAI 530
+N +VVS ++ + L K +A SR H
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-- 428
Query: 531 MNSPQMVAALVHAIS----------NSNDLE-----TTKGAVGTLHNLSHHRQGLLAIFK 575
S +V A I+ N+ D++ T G +L +
Sbjct: 429 --SHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----SDLRVLSGSIS---- 476
Query: 576 SGGIPALVK-LLSSPV--ESVLFYAITTLHNL------------LLHQ--EGSKMAVRLA 618
+V ++ PV E+ + T H L L H+ +G+ + V +A
Sbjct: 477 ----ERIVDCIIRLPVKWETTTQFKAT--HILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 619 GGLQK 623
G L
Sbjct: 531 GTLDI 535
Score = 58.5 bits (141), Expect = 1e-08
Identities = 84/581 (14%), Positives = 164/581 (28%), Gaps = 171/581 (29%)
Query: 442 PETLEEG-----IEIPST----------QFDTAQPTAVQRLT---EPSQMLKHAVVNL-- 481
P TL G + +P+ QF+ P + EP+ L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-----TPAELVG 62
Query: 482 -----INYQDDADLATRAIPELIKLLND-EDQV-----VVSQAAMMVHQLSKKEASRHAI 530
++ + + L L + E+ + + AA ++ + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 531 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQG---LLAIFKSGG-------IP 580
+ + A + K + L +G L+AIF GG
Sbjct: 123 ------IKNYITARIMAKR-PFDKKSNSAL--FRAVGEGNAQLVAIF--GGQGNTDDYFE 171
Query: 581 ALVKLLSSP---VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRN---NVK 634
L L + V ++ ++ TL L+ + GL + L + +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 635 FLAIVT-DC-----LQILAYGNQESKLIILASQG--PVELVRIMRSYDYEKLLWCTSRVL 686
+L + C +Q+ Y ++ G P EL ++ + ++
Sbjct: 230 YLLSIPISCPLIGVIQLAHY------VVTAKLLGFTPGELRSYLKG-----ATGHSQGLV 278
Query: 687 --KVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDA-----GTK--- 736
++ S + V + +G N L D+ G
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 737 --VDGLE-SLLQSLVQ-----LLASQDI-----N-----VIT------CAAGVTVCQVGG 772
+ L +Q V L A + + N V++ +T+ +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 773 VEALVQTIVNAGDRE--------EITEPADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTG 824
L Q+ + +R+ + P HS + L P+
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPF-HS-------HLL------------VPASDL 438
Query: 825 KEEDMDGDQLMFEMDQ-GFGQGFTQDQVTVCQVGG--VEALVQTI----VN--AGDREEI 875
+D+ + + F T D + + G E +V I V + +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 876 TE-----P-AVCALRHLTSRHVESEMAQNAVRLNYGIQTIV 910
T P L LT R+ + G++ IV
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDG----------TGVRVIV 529
Score = 42.7 bits (100), Expect = 7e-04
Identities = 58/337 (17%), Positives = 100/337 (29%), Gaps = 133/337 (39%)
Query: 4 VAALVHAISNSNDLETTKGAV-GTLHNLSHHRQGLL---AIFKSGGIPALVKLLSKTLVT 59
V L H + + L T G + L + H QGL+ AI ++ + + K +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 60 ----------ASSNNTL---ILQDDAD---------LATRAIPELIKLLNDEDQDDADLA 97
A N +L IL+D + L+ +L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-----------------NLT 345
Query: 98 TRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVS--QAAM--MVHQLSKKEA 153
+ + + N + I L+N +VVS ++ + L K +A
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVE-------ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 154 ------SR---------------------HAIMNSPQMVAALVHAIS----------NSN 176
SR H S +V A I+ N+
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFH----SHLLVPA-SDLINKDLVKNNVSFNAK 453
Query: 177 DLE-----TTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVK-LLSSPV--ESVLFYAITT 228
D++ T G +L + +V ++ PV E+ + T
Sbjct: 454 DIQIPVYDTFDG-----SDLRVLSGSIS--------ERIVDCIIRLPVKWETTTQFKAT- 499
Query: 229 LHNL------------LLHQ--EGSKMAVRLAGGLQK 251
H L L H+ +G+ + V +AG L
Sbjct: 500 -HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 41.2 bits (96), Expect = 0.002
Identities = 53/292 (18%), Positives = 83/292 (28%), Gaps = 111/292 (38%)
Query: 277 GNQESKLIILASQGPVELVRIM-----RSYDYEKLLW-----CTSRVL--KVLSVCSSNK 324
G+QE QG M ++ + +W +L + +N
Sbjct: 1625 GSQE--------QG-------MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN- 1668
Query: 325 PAIVEAGGMQALAMHLGHP-SQRLVQNCLW-TLRNLSDAGTKVSLLFNEI---------- 372
P L +H G +R+ +N + D K +F EI
Sbjct: 1669 P--------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 373 ---------ENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLL--HSRNE------- 414
+ Q A L E A E ++++G P HS E
Sbjct: 1721 SEKGLLSATQFTQP--ALTLMEKAA----FEDLKSKGLI-PADATFAGHSLGEYAALASL 1773
Query: 415 -GV---EILIQGVHKIFKIHKINIHRGCLM--FPETLEEGIEI-------PSTQFDTAQP 461
V E L++ V RG M E G P +
Sbjct: 1774 ADVMSIESLVEVVFY----------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 462 TAVQRLTEPSQMLKHAVVNLINY-----Q-----DDADLATRAIPELIKLLN 503
A+Q + E +V ++NY Q D RA+ + +LN
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-----LRALDTVTNVLN 1870
Score = 37.3 bits (86), Expect = 0.028
Identities = 47/299 (15%), Positives = 85/299 (28%), Gaps = 112/299 (37%)
Query: 649 GNQESKLIILASQGPVELVRIM-----RSYDYEKLLW-----CTSRVL--KVLSVCSSNK 696
G+QE QG M ++ + +W +L + +N
Sbjct: 1625 GSQE--------QG-------MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN- 1668
Query: 697 PAIVEAGGMQALAMHLGHP-SQRLVQNCLW-TLRNLSDAGTKVDGLESLLQSLVQLLASQ 754
P L +H G +R+ +N + D K E + + + + S
Sbjct: 1669 P--------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK---TEKIFKEINEHSTS- 1716
Query: 755 DINVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEPA--DHSVNMWQ--QQNYLVDS- 809
L T + T+PA ++ + L+ +
Sbjct: 1717 ------------YTFRSEKGLLSAT--------QFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 810 ----GIHS-----------GVNT--NAPSLT---GK------EEDMDG--DQLMFEMDQG 841
G HS V + + + G D G + M ++ G
Sbjct: 1757 ATFAG-HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 842 -FGQGFTQDQV-TVCQVGGVEA--LVQTIVN----------AGDREEITEPAVCALRHL 886
F+Q+ + V + G LV+ IVN AGD + + L +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVE-IVNYNVENQQYVAAGDLRAL-DTVTNVLNFI 1872
Score = 34.6 bits (79), Expect = 0.23
Identities = 34/215 (15%), Positives = 56/215 (26%), Gaps = 88/215 (40%)
Query: 795 HSVNM--------------WQQ-QNYLVDS-G--IHSGVNTNAPSLT-------GKEEDM 829
M W + N+ D+ G I V N +LT GK
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 830 DGDQLMFE-MDQGFGQ------GFTQDQVTVCQVGGVEALVQTIVNAGDREEITEPAVCA 882
+ ++FE + G + + + L T + T+PA+
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--------QFTQPALTL 1738
Query: 883 LRHLTSRHVESEMAQNAVRLNYGIQTIVNLLNPPSRWPLVKAVIGLIRNLALCQANHAPL 942
+ E A + G+ P G H L
Sbjct: 1739 M----------EKAAFEDLKSKGLI------------PADATFAG-----------H-SL 1764
Query: 943 REYGAIHLLV----ILLNRAFTDTQRVSRTGLFFR 973
EY A L ++ + V +F+R
Sbjct: 1765 GEYAA---LASLADVM---SIESLVEV----VFYR 1789
Score = 34.3 bits (78), Expect = 0.27
Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 84/228 (36%)
Query: 262 KFLAIVTDCLQILAYGNQESKL---------IILASQGPVELVRIMRSYDYEKL------ 306
K + + + +++ L + L ++S
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME---KAAFEDLKSKGLIPADATFAG 1761
Query: 307 --------LWCTSRVL-------------KVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ 345
L + V+ + V GM A+ +P +
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-----NPGR 1816
Query: 346 RLVQNCLWTLRNLSD-AGTKVSLL-----FNEIENIQRVAAGLLCELAQDKEGAETIEAE 399
L+ + + G + L +N +EN Q VAAG D +T
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYN-VENQQYVAAG-------DLRALDT---- 1864
Query: 400 GATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEE 447
+T++L K+ KI+I L +LEE
Sbjct: 1865 -----VTNVL---------------NFIKLQKIDIIE--LQKSLSLEE 1890
Score = 30.8 bits (69), Expect = 3.0
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 42/141 (29%)
Query: 5 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNN 64
AAL ++++ +E+ V + +R G+ +P S + A +
Sbjct: 1768 AALA-SLADVMSIES---LV----EVVFYR-GMTM---QVAVPRDELGRSNYGMIAINPG 1815
Query: 65 TLILQDDADLATRAIPELI-----KLL-----NDEDQ------DDADLATRAIPELIKLL 108
+ + A + + E + L+ N E+Q D RA+ + +L
Sbjct: 1816 RVAASFSQE-ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-----LRALDTVTNVL 1869
Query: 109 NDEDQDDADLATRAIPELIKL 129
N + + I +I+L
Sbjct: 1870 N-------FIKLQKID-IIEL 1882
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 51.9 bits (125), Expect = 4e-08
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 76 TRAIPELIKLLNDEDQDD--------ADLATRAIPELIKLLNDEDQDDADLA-------- 119
+ + + DE++ + + A L++ L++ED A
Sbjct: 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQ 70
Query: 120 -TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA 153
RA+ LIKLL D+ V S AA + Q+ +
Sbjct: 71 DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERV 105
Score = 48.1 bits (115), Expect = 9e-07
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 72 ADLATRAIPELIKLLNDEDQDDADLA---------TRAIPELIKLLNDEDQD---DADLA 119
+ + A L++ L++ED A RA+ LIKLL D+ A +
Sbjct: 37 SRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARS 96
Query: 120 ------TRAIPELIKLLNDEDQVVVSQAAM 143
R + KL A
Sbjct: 97 LEQIGGERVRAAMEKLAETGTGFARKVAVN 126
Score = 36.1 bits (84), Expect = 0.012
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 22/114 (19%)
Query: 488 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS 547
+ + A L++ L++ED + AA + + V L+ + +
Sbjct: 37 SRMGDEAFEPLLESLSNEDWRIRGAAA---WIIGN--------FQDERAVEPLIKLLEDD 85
Query: 548 NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 601
GA +L + R A+ KL + A+ L
Sbjct: 86 -SGFVRSGAARSLEQIGGER----------VRAAMEKLAETGTGFARKVAVNYL 128
Score = 35.0 bits (81), Expect = 0.029
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 23/113 (20%)
Query: 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE 179
+ + + DE++ V + LS+ + L+ ++SN D
Sbjct: 11 SSGLVPRGSHMADENKWVRRDVSTA---LSR---------MGDEAFEPLLESLSNE-DWR 57
Query: 180 TTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 232
A + N R + L+KLL V A +L +
Sbjct: 58 IRGAAAWIIGNFQDER----------AVEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 35.0 bits (81), Expect = 0.029
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 23/113 (20%)
Query: 492 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLE 551
+ + + DE++ V + LS+ + L+ ++SN D
Sbjct: 11 SSGLVPRGSHMADENKWVRRDVSTA---LSR---------MGDEAFEPLLESLSNE-DWR 57
Query: 552 TTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
A + N R + L+KLL V A +L +
Sbjct: 58 IRGAAAWIIGNFQDER----------AVEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 34.6 bits (80), Expect = 0.042
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 77 RAIPELIKLLNDEDQD---DADLA------TRAIPELIKLLNDEDQDDADLATRAI 123
RA+ LIKLL D+ A + R + KL +A +
Sbjct: 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 128
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 56.3 bits (134), Expect = 5e-08
Identities = 108/762 (14%), Positives = 232/762 (30%), Gaps = 84/762 (11%)
Query: 75 ATRAIPELIKLLNDEDQD--------------------DADLATRAIPELIKLLNDEDQD 114
A+ I L++ + D+D D D + + ++KLL D++ +
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 115 DADLATRAIPELIK----------------LLNDEDQVVVSQAAMMVHQL-----SKKEA 153
+LA + + L+ + + + + +++ + +
Sbjct: 64 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 154 SRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKL 213
S A ++ L AI+ D+ A+ + ++ + GLL F + L+
Sbjct: 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183
Query: 214 LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQI 273
L+SP +V I L +L++ + L + L +++ C+
Sbjct: 184 LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE---LSKNDSMSTTRTYIQCIAA 240
Query: 274 LAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGM 333
++ L P+ +V+ D E +C + C V +
Sbjct: 241 ISRQAGHRIGEYLEKIIPL-VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-II 298
Query: 334 QALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIE---------NIQRVAAGLLC 384
+L + + + G ++ E ++R AA L
Sbjct: 299 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358
Query: 385 ELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPET 444
+ + + + L R E V H + K +
Sbjct: 359 AVVSTRHEMLPEFYKTVSPALISRFKEREENV--KADVFHAYLSLLKQTRPVQSWLCDPD 416
Query: 445 LEEGIEIPSTQFDTAQPTAVQRL----TEPSQMLKHAVVNLI------NYQDDADLATRA 494
E E P T + P V+ L E S + N++
Sbjct: 417 AMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVL 476
Query: 495 IPELIKLLND--EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLET 552
+P +I LND + A ++ + + + + +V +V + + +
Sbjct: 477 VPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY-KI 535
Query: 553 TKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY---------AITTLHN 603
T A+ L + L P + L + ++ + AI+ +
Sbjct: 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595
Query: 604 LLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGP 663
++ + G + L LQ + L + L ++A + L + +G
Sbjct: 596 IICN-LGDNLGSDLPNTLQIFLERLKNEITR--LTTVKALTLIAGSPLKIDLRPVLGEGV 652
Query: 664 VELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNC 723
L +R L S + ++ S + A + + L + + Q
Sbjct: 653 PILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMA 712
Query: 724 LWTLRNLSDAGTKVDG--LESLLQSLVQLLASQDINVITCAA 763
+ L L+ S+L L+ L+ S + +A
Sbjct: 713 ISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Score = 47.8 bits (112), Expect = 2e-05
Identities = 110/785 (14%), Positives = 231/785 (29%), Gaps = 73/785 (9%)
Query: 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS-KTLVT 59
+E + LV N +D E + + + + S I +K L+
Sbjct: 253 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN 312
Query: 60 ASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLA 119
+ DAD +D+D + A L +++ + +
Sbjct: 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY 372
Query: 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP--------------QMV 165
P LI + ++ V + L K+ + + P V
Sbjct: 373 KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV 432
Query: 166 AALVHAISN---SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLS--SPVES 220
+V A+ ++T + L L + G L +P ++ L+ S +
Sbjct: 433 PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN 492
Query: 221 VLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQE 280
+ A++ L+ +L + + + +V +G K + Q L
Sbjct: 493 LKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQL------ 546
Query: 281 SKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHL 340
+ + + + + L CT + LK + K + M + +L
Sbjct: 547 ----VKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISC--MGQIICNL 600
Query: 341 GHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEG 400
G + N L + L NEI + V A L + K + EG
Sbjct: 601 GDNLGSDLPNTL---------QIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG 651
Query: 401 ATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCL-MFPETLEEGIEIPSTQFDTA 459
+ L ++ + + + K + ++ + + L I
Sbjct: 652 VPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQM 711
Query: 460 QPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ 519
+ + L + + I + ELI L+ + +AM+
Sbjct: 712 AISFLTTLAKVYPSSLSKISGSI------------LNELIGLVRSPLLQGGALSAML-DF 758
Query: 520 LSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGI 579
+ + ++ L + + + T K + ++++ L G
Sbjct: 759 FQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQS---YYSIAKCVAALTRACPKEGP 815
Query: 580 PALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVL-LLGRNNVKFLAI 638
+ + + S +I L L L + G + + L+ ++L + + +
Sbjct: 816 AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSA 875
Query: 639 VTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPA 698
+ L ++ GN L P L I + LL + + +++S S
Sbjct: 876 ASYALGSISVGNLPEYL-------PFVLQEITSQPKRQYLLLHSLK--EIISSASVVGLK 926
Query: 699 IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINV 758
L H + L L+ + E+LL L L S
Sbjct: 927 PYVENIWALLLKHCECAEEGTRNVVAECLGKLT-----LIDPETLLPRLKGYLISGSSYA 981
Query: 759 ITCAA 763
+
Sbjct: 982 RSSVV 986
Score = 38.9 bits (89), Expect = 0.010
Identities = 68/536 (12%), Positives = 157/536 (29%), Gaps = 42/536 (7%)
Query: 69 QDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIK 128
D IK L D D ++ RAI + +++ + + + ++
Sbjct: 559 FDATPYIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617
Query: 129 LLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTL 188
L +E + + A+ + S + ++ + A + T A+ L
Sbjct: 618 RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677
Query: 189 HNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGG 248
+ ++ L A + L L+S V AI+ L L S +
Sbjct: 678 --IKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKI-SGSI 734
Query: 249 LQKMVLLLGRNNVKF--LAIVTDCLQILAY-GNQESKLIILASQGPVELVRIMRSYDYEK 305
L +++ L+ ++ L+ + D Q L G + L + + +++
Sbjct: 735 LNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQ 794
Query: 306 LLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRL--------VQNCLWTLRN 357
+ ++ + L+ + V +Q + S RL V + +
Sbjct: 795 SYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ 854
Query: 358 LSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVE 417
L + + E ++ A+ L ++ + + S+ +
Sbjct: 855 LELKSVILEAFSSPSEEVKSAASYALGSISVGN-------LPEYLPFVLQEITSQPKRQY 907
Query: 418 ILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHA 477
+L+ + +I + + ++ + ++
Sbjct: 908 LLLHSLKEIIS-----------------SASVVGLKPYVENIWALLLKHCECAEEGTRNV 950
Query: 478 VVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMV 537
V + D T +P L L S V + +
Sbjct: 951 VAECLGKLTLIDPETL-LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIG 1009
Query: 538 AALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESV 593
L DL + A+ T ++ +H++ L+ +P L E +
Sbjct: 1010 DFL--KTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELI 1063
Score = 35.8 bits (81), Expect = 0.080
Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 16/194 (8%)
Query: 28 HNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLN 87
NL + +L S + L S + +S++ + L+K
Sbjct: 886 GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGL----KPYVENIWALLLKHCE 941
Query: 88 DEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQ 147
++ ++ + +L + + +P L L S V
Sbjct: 942 CAEEGTRNVVAECLGKLTLIDPETL----------LPRLKGYLISGSSYARSSVVTAVKF 991
Query: 148 LSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGI 207
+ + L DL + A+ T ++ +H++ L+ +
Sbjct: 992 TISDHPQPIDPLLKNCIGDFL--KTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVL 1049
Query: 208 PALVKLLSSPVESV 221
P L E +
Sbjct: 1050 PHLYNETKVRKELI 1063
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 54.4 bits (131), Expect = 1e-07
Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 40/235 (17%)
Query: 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATRAI-------------PELIKLLNDE 111
+ D+A A+ +K D + LA R + L K L DE
Sbjct: 74 MNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 133
Query: 112 D---------------QDDADLATRA--IPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS 154
D +A + + L L+ D + +VV+ A + ++S+ +
Sbjct: 134 DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193
Query: 155 RHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLL 214
+ + +PQ + L+ A++ + + L N + + L
Sbjct: 194 SNLLDLNPQNINKLLTALNECTEWGQIF-ILDCLSNYNPKDDREAQSI----CERVTPRL 248
Query: 215 SSPVESVLFYAITTLHNLL----LHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLA 265
S +V+ A+ L L + M ++ LL G V+++A
Sbjct: 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVA 302
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/160 (16%), Positives = 59/160 (36%), Gaps = 12/160 (7%)
Query: 484 YQDDADLATRA--IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALV 541
+ +A + + L L+ D + +VV+ A + ++S+ + + + +PQ + L+
Sbjct: 149 HDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLL 208
Query: 542 HAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 601
A++ + + L N + + LS +V+ A+ L
Sbjct: 209 TALNECTEWGQIF-ILDCLSNYNPKDDREAQSI----CERVTPRLSHANSAVVLSAVKVL 263
Query: 602 HNLL----LHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLA 637
L + M ++ LL G V+++A
Sbjct: 264 MKFLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVA 302
Score = 29.3 bits (66), Expect = 6.9
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 27/158 (17%)
Query: 481 LINYQD-DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAA 539
L+NY D+A A+ +K D + ++ A+ V + + ++
Sbjct: 73 LMNYAKSQPDMAIMAVNSFVKDCEDPNPLIR---ALAVRTMGC--------IRVDKITEY 121
Query: 540 LVHAISNSNDLETTKG--------AVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVE 591
L + L+ V LH+++ + G + +L L++
Sbjct: 122 LCEPLRKC--LKDEDPYVRKTAAVCVAKLHDINAQ-----MVEDQGFLDSLRDLIADSNP 174
Query: 592 SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLG 629
V+ A+ L + S + + K++ L
Sbjct: 175 MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 50.2 bits (119), Expect = 3e-06
Identities = 68/623 (10%), Positives = 180/623 (28%), Gaps = 97/623 (15%)
Query: 45 GIPALVKLLSKTLVTASSNNTLILQ-----DDADLATRAIPELIKLLNDEDQDDADLATR 99
G+ +++LL ++ S + T+ + + LI +L +D +
Sbjct: 11 GLQQILQLLKESQ---SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSL 67
Query: 100 AIPELIKLLNDE-DQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAI 158
+ L + + E + + D ++ + +++ ++ K ++
Sbjct: 68 SGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW- 126
Query: 159 MNSPQMVAALVHAISNSNDLETTKGAVGTLHNL-----SHHRQGLLAIFKSGGIPALVKL 213
P ++ L + +S D T +GA G L + +L + IP ++
Sbjct: 127 ---PDLLPKLCSLL-DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182
Query: 214 LSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQI 273
+ +A+ ++ ++ + + M + + + +
Sbjct: 183 FKHSSPKIRSHAVACVNQFIISRTQALML-------------------HIDSFIENLFAL 223
Query: 274 LAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGM 333
E + + + LV ++ ++LL +++ + + ++
Sbjct: 224 AGDEEPEVRKNVCRA-----LVMLLEVR-MDRLLPHMHNIVEYMLQRTQDQ--------- 268
Query: 334 QALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGA 393
+ + L++ +L + + V + D
Sbjct: 269 ----------DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318
Query: 394 ETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPS 453
+ G+ T + + + + ++
Sbjct: 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY------------------------RD 354
Query: 454 TQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDD------ADLATRAIPELIKLLNDEDQ 507
P + L ++K + + ++ + IP LI+ L+D+
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414
Query: 508 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHR 567
+V S + + + S+ ++ L+ I +SN + A L
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEA 473
Query: 568 QGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQ---KM 624
L + + + LV S L + L L
Sbjct: 474 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 533
Query: 625 VLLLGRNNVKFLAIVTDCLQILA 647
+ ++ K L + +CL +A
Sbjct: 534 KWNMLKDEDKDLFPLLECLSSVA 556
Score = 36.3 bits (83), Expect = 0.064
Identities = 98/701 (13%), Positives = 201/701 (28%), Gaps = 97/701 (13%)
Query: 207 IPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAI 266
+P L LL S + A L K+ A L VL + +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQ---------KICEDSAEILDSDVL-----DRPLNIM 175
Query: 267 VTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPA 326
+ LQ + + + + + + + +
Sbjct: 176 IPKFLQFFKHSSPKIRSHAV-------------------------ACVNQFIISRTQALM 210
Query: 327 IVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCEL 386
+ ++ L G + +N L L ++ L + NI + +
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVML--LEVRMDRLLPHMHNI----VEYMLQR 264
Query: 387 AQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLE 446
QD++ +EA L + ++ V L + + + K + L+ +
Sbjct: 265 TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEG 324
Query: 447 EGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDED 506
+ + + L + + + ++ I +P L +LL +
Sbjct: 325 GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI------------LPLLKELLFHHE 372
Query: 507 QVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL--ETTKGAVGTLHNLS 564
VV ++ ++V + + I P+++ L+ +S+ L T +
Sbjct: 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY--AH 429
Query: 565 HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKM 624
+ + L+K + + V A + L +++ LA L +
Sbjct: 430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA-CTELVPYLAYILDTL 488
Query: 625 VLLLGRNNVKFLAIVTDCLQILAY--GNQESKLIILASQGPVELVRIMRSYDYEKLLW-- 680
V + K L I+ D + LA G+ +K + P + + D +K L+
Sbjct: 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 548
Query: 681 --CTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVD 738
C S V L V + + L Q + + +D
Sbjct: 549 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608
Query: 739 GLESLLQSL----VQLLASQDI--NVITCAAGVTVCQVGGVEALVQTIVNAGDREEITEP 792
L L + L QL+A +I + C AL+ + A
Sbjct: 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF------- 661
Query: 793 ADHSVNMWQQQNYLVDSGIHSGVNTNAPSLTGKEEDMDGDQLMFEMDQGFGQGFTQDQVT 852
+ + D G N N ++ + E+ G
Sbjct: 662 -------QHVKPCIADFMPILGTNLNPEFISVCNNAT---WAIGEISIQMGIEMQPYIPM 711
Query: 853 VCQVGGVEALVQTIVNAGDREEITEPAVCALRHLTSRHVES 893
V + LV+ I + + E + L +
Sbjct: 712 V-----LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE 747
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 49.6 bits (118), Expect = 4e-06
Identities = 64/463 (13%), Positives = 141/463 (30%), Gaps = 60/463 (12%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVV 138
L +D+ A + E K+L ++ + + IP L +DE V
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-----VKSEIIPMFSNLASDEQDSVR 220
Query: 139 SQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 198
A +++ ++ L A + + L
Sbjct: 221 LLAVEACVNIAQLL---PQEDLEALVMPTLRQAAEDKSW-RVRYMVADKFTELQKAVGP- 275
Query: 199 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH-QEGSKMAVRLAGGLQKMVLLLG 257
I K+ +PA L+ V A + + + V ++ L + L+
Sbjct: 276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334
Query: 258 RNNVKFLAIVTDCLQILA--YGNQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLK 315
N + + + L+ G + +L + ++ E L S +
Sbjct: 335 DANQHVKSALASVIMGLSPILGKDNTIEHLL-----PLFLAQLKDECPEVRLNIISNLDC 389
Query: 316 VLSVCSSNK--PAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTK--------- 364
V V + ++ + A+ R+ + + L+
Sbjct: 390 VNEVIGIRQLSQSL-----LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS 444
Query: 365 --VSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGV-EILIQ 421
++ L + + I+ A L +L + K G E A + + N +
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVE-KFGKEWAHAT-IIPKVLAMSGDPNYLHRMTTLF 502
Query: 422 GVHKIFKIHKINIHRGCLMFPETLEEGI--EIPSTQFDTAQPTAVQRLTEPSQMLKHAVV 479
++ + ++ +I ++ T+ + + +F+ A+ ++
Sbjct: 503 CINVLSEVCGQDITTKHML--PTVLRMAGDPVANVRFNVAK----------------SLQ 544
Query: 480 NLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSK 522
+ D++ L + P L KL D+D V A + LS
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587
Score = 45.4 bits (107), Expect = 9e-05
Identities = 78/538 (14%), Positives = 162/538 (30%), Gaps = 54/538 (10%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVV 138
+P L + DED+ LA + L+ + +P L L E+ VV
Sbjct: 51 LPFLTDTIYDEDEVLLALA-EQLGTFTTLVGGPE-----YVHCLLPPLESLATVEETVVR 104
Query: 139 SQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGL 198
+A + +S + + + +V L + + A G +
Sbjct: 105 DKAVESLRAISHEHSPSDLEAHFVPLVKRLAG----GDWFTSRTSACGLFSVCYPR---V 157
Query: 199 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 258
+ K+ L S V A + L E + + + +
Sbjct: 158 SSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL-ASDEQ 216
Query: 259 NNVKFLAIVTDCLQILAYGNQESK------LIILASQGPVELVRIMRSYDYEKLLWC--- 309
++V+ LA+ C+ I QE + A++ VR M + + +L
Sbjct: 217 DSVRLLAVEA-CVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275
Query: 310 ---TSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVS 366
+ ++ + A V A + + S +N + +
Sbjct: 276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS----QILPCIKE 331
Query: 367 LLFNEIENIQRVAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKI 426
L+ + ++++ A ++ L+ TIE L V + I I
Sbjct: 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEH--LLPLFLAQLKDECPEVRLNI-----I 384
Query: 427 FKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQD 486
+ +N G ++L I + A+ + E + L
Sbjct: 385 SNLDCVNEVIGIRQLSQSLLPAIV---ELAEDAKWRVRLAIIE-------YMPLLAGQLG 434
Query: 487 DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN 546
+ + L D + A + +L +K + + V A+S
Sbjct: 435 VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSG 490
Query: 547 SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ + ++ LS I +P ++++ PV +V F +L +
Sbjct: 491 DPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI 546
Score = 42.3 bits (99), Expect = 8e-04
Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)
Query: 472 QMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIM 531
M+ L T +P L+ D + V + A+ V + + ++
Sbjct: 260 YMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN 319
Query: 532 NSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHH--RQGLLAIFKSGGIPALVKLLSSP 589
+ + + + + + LS + + +P + L
Sbjct: 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL----LPLFLAQLKDE 375
Query: 590 VESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYG 649
V I+ L + +++ L L +V L + + + + +LA
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSL---LPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432
Query: 650 NQESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGG----- 704
+L + + W V + +SN +VE G
Sbjct: 433 LGVEFF-------DEKLNSLC-------MAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 705 ---MQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLASQDINVITC 761
+ + G P+ L+ + LS+ + + +L +++++ NV
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 762 AA 763
A
Sbjct: 539 VA 540
Score = 37.3 bits (86), Expect = 0.027
Identities = 24/196 (12%), Positives = 54/196 (27%), Gaps = 38/196 (19%)
Query: 70 DDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKL 129
+ +P + L DE + + + +++ L+ +P +++L
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-----QLSQSLLPAIVEL 410
Query: 130 LNDED----QVVVSQAAMMVHQLSKKEASRHAI---------------MNSPQMVAALVH 170
D ++ ++ QL + + + LV
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 171 AISNSNDLETTKGAVGTL--HNLSHHRQGLL------------AIFKSGGIPALVKLLSS 216
T V + HR L I +P ++++
Sbjct: 471 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD 530
Query: 217 PVESVLFYAITTLHNL 232
PV +V F +L +
Sbjct: 531 PVANVRFNVAKSLQKI 546
Score = 30.8 bits (69), Expect = 2.9
Identities = 66/509 (12%), Positives = 147/509 (28%), Gaps = 56/509 (11%)
Query: 111 EDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVH 170
D DD+ I LI L +ED + + + ++ +++ L
Sbjct: 3 ADGDDSLYP---IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTR---SELLPFLTD 56
Query: 171 AISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLH 230
I + + E L + G + +P L L + V A+ +L
Sbjct: 57 TIYDED--EVLLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLR 112
Query: 231 NLLLH---QEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILA 287
+ + V L L R + L V A + +
Sbjct: 113 AISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNL 172
Query: 288 SQGPVELVRIMRSYDYEKLL------WCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLG 341
+VR + + S ++ + S +S++ V ++A
Sbjct: 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 342 H-PSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEGAETIEAEG 400
P + L + TLR ++ ++ ++ + A EL + + E
Sbjct: 233 LLPQEDLEALVMPTLRQAAE---------DKSWRVRYMVADKFTEL------QKAVGPEI 277
Query: 401 ATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQ 460
L ++ ++ + C E + +
Sbjct: 278 TKTDLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ-----IL 326
Query: 461 PTAVQRLTEPSQMLKHAVVNLINYQ----DDADLATRAIPELIKLLNDEDQVVVSQAAMM 516
P + +++ +Q +K A+ ++I + +P + L DE V
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 517 VHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKS 576
+ +++ R Q + + ++ + + L+ Q + F
Sbjct: 387 LDCVNEVIGIRQLS----QSLLPAIVELAEDAKWRVRLAIIEYMPLLAG--QLGVEFFDE 440
Query: 577 GGIPALVKLLSSPVESVLFYAITTLHNLL 605
+ L V ++ A + L L+
Sbjct: 441 KLNSLCMAWLVDHVYAIREAATSNLKKLV 469
Score = 30.0 bits (67), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 70 DDADLATRAIPELIKLLNDEDQDDADLATRAIPEL 104
D++ L + P L KL D+D D A A+ L
Sbjct: 551 DNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 47.0 bits (111), Expect = 1e-05
Identities = 26/181 (14%), Positives = 64/181 (35%), Gaps = 24/181 (13%)
Query: 1 MEMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTA 60
M+ L + S + T+ ++ + L+ IP L
Sbjct: 68 EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK----SMIPVLFANYRIGDEKT 123
Query: 61 SSNNTLILQD----DADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDA 116
N + L++ + L + + + +L+ ++++D A I + + +
Sbjct: 124 KINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE-------NSF 176
Query: 117 DLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSN 176
+P +I LL+D D++V + A + L+ + ++ ++ + N
Sbjct: 177 KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL---------NDKLRKVVIKRLEELN 227
Query: 177 D 177
D
Sbjct: 228 D 228
Score = 42.4 bits (99), Expect = 4e-04
Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 15/144 (10%)
Query: 86 LNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMV 145
+ +E+ D + A E + ++ A + +LI+LL+D+ VV A ++
Sbjct: 3 MEEEEFDIREAL--ANGEHL----EKILIMAKYDESVLKKLIELLDDDLWTVVKNAISII 56
Query: 146 HQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSG 205
++K M+ L + S + T+ ++ + L+
Sbjct: 57 MVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK----S 107
Query: 206 GIPALVKLLSSPVESVLFYAITTL 229
IP L E L
Sbjct: 108 MIPVLFANYRIGDEKTKINVSYAL 131
Score = 41.6 bits (97), Expect = 6e-04
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 488 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNS 547
A + +LI+LL+D+ VV A ++ ++K M+ L + S
Sbjct: 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKS 81
Query: 548 NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 601
+ T+ ++ + L+ IP L E L
Sbjct: 82 EAIPLTQEIAKAFGQMAKEKPELVK----SMIPVLFANYRIGDEKTKINVSYAL 131
Score = 40.8 bits (95), Expect = 0.001
Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 47/195 (24%)
Query: 72 ADLATRAIPELIKLLNDEDQD---------------DADLATRAIPELIKLLNDEDQDD- 115
A + +LI+LL+D+ DL + +L LL +
Sbjct: 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPL 86
Query: 116 ---------------ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMN 160
+L IP L D+ + + +++K
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAK---------A 137
Query: 161 SPQMVAALVHAISN---SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSP 217
+P ++A++V + S + E A+ + + + + F +P ++ LL
Sbjct: 138 NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF----LPRIINLLHDG 193
Query: 218 VESVLFYAITTLHNL 232
E V A+ L +L
Sbjct: 194 DEIVRASAVEALVHL 208
Score = 32.7 bits (74), Expect = 0.40
Identities = 31/219 (14%), Positives = 74/219 (33%), Gaps = 26/219 (11%)
Query: 333 MQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDKEG 392
++ L L +V+N + + ++ + + + L L + +
Sbjct: 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTRE---------DLYEPMLKKLFSLLKKSEAI 84
Query: 393 AETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIP 452
T E A + + E V+ +I + ++I LEE +
Sbjct: 85 PLTQEIAKA---FGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVS---YALEEIAKAN 138
Query: 453 STQFDTAQPTAVQRLTEPSQMLKHAVVNLINY--QDDADLATRAIPELIKLLNDEDQVVV 510
+ + L+ ++ K +N I ++ +P +I LL+D D++V
Sbjct: 139 PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198
Query: 511 SQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND 549
+ A + L+ + ++ ++ + ND
Sbjct: 199 ASAVEALVHLATL---------NDKLRKVVIKRLEELND 228
Score = 31.6 bits (71), Expect = 1.1
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 544
++ +L IP L D+ + + +++K +P ++A++V
Sbjct: 99 KEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAK---------ANPMLMASIVRDF 149
Query: 545 SN---SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 601
+ S + E A+ + + + + F +P ++ LL E V A+ L
Sbjct: 150 MSMLSSKNREDKLTALNFIEAMGENSFKYVNPF----LPRIINLLHDGDEIVRASAVEAL 205
Query: 602 HNL 604
+L
Sbjct: 206 VHL 208
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 46.7 bits (111), Expect = 2e-05
Identities = 21/186 (11%), Positives = 47/186 (25%), Gaps = 50/186 (26%)
Query: 77 RAIPELIKLLNDEDQ--------------DDADLATRAIPELIK-LLNDED--------- 112
A+ I+ +D++ L LND+
Sbjct: 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113
Query: 113 ------QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVA 166
+ + + + + + D+ V A + ++ K +
Sbjct: 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT-----------IP 162
Query: 167 ALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAI 226
L++ + + + A + + S V++L E V AI
Sbjct: 163 LLINLL-KDPNGDVRNWAAFAI--------NINKYDNSDIRDCFVEMLQDKNEEVRIEAI 213
Query: 227 TTLHNL 232
L
Sbjct: 214 IGLSYR 219
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 16/113 (14%)
Query: 46 IPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLA-------- 97
IP L+ LL + + + + +++L D++++ A
Sbjct: 161 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220
Query: 98 -TRAIPELIKLLNDED-QDDADLA------TRAIPELIKLLNDEDQVVVSQAA 142
R + L L DD A +P L +L D + +A
Sbjct: 221 DKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSA 273
Score = 34.4 bits (79), Expect = 0.15
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 20/120 (16%)
Query: 485 QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAI 544
+ + + + + + D+ V A + ++ K + L++ +
Sbjct: 120 KKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT-----------IPLLINLL 168
Query: 545 SNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
+ + A + + S V++L E V AI L
Sbjct: 169 -KDPNGDVRNWAAFAI--------NINKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
Score = 34.0 bits (78), Expect = 0.21
Identities = 12/139 (8%), Positives = 29/139 (20%), Gaps = 29/139 (20%)
Query: 116 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS---------------RHAIM- 159
EL +LL+D + + +A ++ ++A
Sbjct: 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFI 77
Query: 160 ---------NSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPAL 210
+ L + N A+ + I+ +
Sbjct: 78 LGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN----PIYSPKIVEQS 133
Query: 211 VKLLSSPVESVLFYAITTL 229
+V +
Sbjct: 134 QITAFDKSTNVRRATAFAI 152
Score = 34.0 bits (78), Expect = 0.21
Identities = 12/139 (8%), Positives = 29/139 (20%), Gaps = 29/139 (20%)
Query: 488 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEAS---------------RHAIM- 531
EL +LL+D + + +A ++ ++A
Sbjct: 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFI 77
Query: 532 ---------NSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPAL 582
+ L + N A+ + I+ +
Sbjct: 78 LGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN----PIYSPKIVEQS 133
Query: 583 VKLLSSPVESVLFYAITTL 601
+V +
Sbjct: 134 QITAFDKSTNVRRATAFAI 152
Score = 32.1 bits (73), Expect = 0.75
Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 18/147 (12%)
Query: 457 DTAQPTAVQRLTEPSQMLKHAVVN-LINYQDDADLATRAIPELIK-LLNDEDQVVVSQAA 514
A A++ ++ + + + L + L LND+ V + A
Sbjct: 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAI 112
Query: 515 MMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF 574
++ + + SP++V + + + ++
Sbjct: 113 ---ESTAQ--RCKKNPIYSPKIVEQSQITAFDK-STNVRRATAFAISVINDKA------- 159
Query: 575 KSGGIPALVKLLSSPVESVLFYAITTL 601
IP L+ LL P V +A +
Sbjct: 160 ---TIPLLINLLKDPNGDVRNWAAFAI 183
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 46.6 bits (110), Expect = 4e-05
Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 19/220 (8%)
Query: 6 ALVHAISN-SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNN 64
L+H + +D E A+ TL+N+ + + + ++ S
Sbjct: 64 HLIHVLQTDRSDSEIIGYALDTLYNI----------ISNDEEEEVEENSTRQSEDLGSQF 113
Query: 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIP 124
T I + + L+ LL + D + + L+K L + Q ++ +
Sbjct: 114 TEIFIKQQE----NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169
Query: 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRH---AIMNSPQMVAALVHAISNSNDLETT 181
L+ LL D +V+ + +++ L++ + A N+ + + ++ NS+
Sbjct: 170 RLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVV 229
Query: 182 KGAVGTLHNLSHHRQGLLAIFK-SGGIPALVKLLSSPVES 220
+ + L NL + FK I + E+
Sbjct: 230 EDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269
Score = 44.7 bits (105), Expect = 1e-04
Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 56/295 (18%)
Query: 56 TLVTASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDD 115
L +++TL+ DD A RA+ L K + ++ +A+ LI +L D+ D
Sbjct: 25 KLCDRVASSTLL--DDRRNAVRALKSLSK------KYRLEVGIQAMEHLIHVL-QTDRSD 75
Query: 116 ADLATRAIPELIKLLN-DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN 174
+++ A+ L +++ DE++ V + L + + + V L+ +
Sbjct: 76 SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFT--EIFIKQQENVTLLLSLL-E 132
Query: 175 SNDLETTKGAVGTLHNLSHHRQGLLA---IFKSGGIPALVKLLSSPVESVLFYAITTLHN 231
D V L +L + + G+ L+ LL+ E + + L
Sbjct: 133 EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQA 192
Query: 232 LLLHQEGSKMAVRLAGGLQKMV-LLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQG 290
L + V ++++ ++ N +V DCL +L
Sbjct: 193 LTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQ--------------- 237
Query: 291 PVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQ 345
+L +SN+ E +Q + +
Sbjct: 238 ------------------------NLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268
Score = 43.6 bits (102), Expect = 3e-04
Identities = 45/266 (16%), Positives = 92/266 (34%), Gaps = 37/266 (13%)
Query: 539 ALVHAISN-SNDLETTKGAVGTLHNLSHHRQGL-------------------LAIFKSGG 578
L+H + +D E A+ TL+N+ + + + I +
Sbjct: 64 HLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQEN 123
Query: 579 IPALVKLLSSPVESVLFYAITTLHNLLLH--QEGSKMAVRLAGGLQKMVLLLGRNNVKFL 636
+ L+ LL V + + L +LL + ++ + G+ +++ LL +
Sbjct: 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIR 183
Query: 637 AIVTDCLQILAYGNQESKLIILASQGPVELVRIMR----SYDYEKLLWCTSRVLKVLSVC 692
LQ L N + I+ L+ I+ S + C + +L
Sbjct: 184 NDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243
Query: 693 SSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVDGLESLLQSLVQLLA 752
+SN+ E +Q + +N W+ + KV L +LQ + L++
Sbjct: 244 NSNQNFFKEGSYIQRMKPWFEVGD----ENSGWSAQ-------KVTNLHLMLQLVRVLVS 292
Query: 753 SQDINVITCAAGVTVCQVGGVEALVQ 778
+ T + + Q G ++ L
Sbjct: 293 PNNPPGATSSCQKAMFQCGLLQQLCT 318
Score = 37.4 bits (86), Expect = 0.025
Identities = 46/260 (17%), Positives = 82/260 (31%), Gaps = 43/260 (16%)
Query: 122 AIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETT 181
A+ L L V QA + + + + S I+ + L + ISN + E
Sbjct: 42 AVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGY--ALDTLYNIISNDEEEEVE 99
Query: 182 KGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLH--QEGS 239
+ + +L + I + + L+ LL V + + L +LL +
Sbjct: 100 ENSTRQSEDLGSQFTEIF-IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ 158
Query: 240 KMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVELVRIMR 299
++ + G+ +++ LL + LQ L N + I+ L+ I
Sbjct: 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI-- 216
Query: 300 SYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLS 359
I E G +V++CL L+NL
Sbjct: 217 ---------------------------ITEEGNSDGG---------IVVEDCLILLQNLL 240
Query: 360 DAGTKVSLLFNEIENIQRVA 379
F E IQR+
Sbjct: 241 KNNNSNQNFFKEGSYIQRMK 260
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 46.7 bits (110), Expect = 4e-05
Identities = 40/383 (10%), Positives = 97/383 (25%), Gaps = 64/383 (16%)
Query: 74 LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDE 133
+ + L + LN ED + + L+K + +L + I ++
Sbjct: 293 ITENYLQLLERSLNVED-----VQIYSALVLVKTWSFTKLTCINLKQLS-EIFINAISRR 346
Query: 134 DQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLS- 192
V + + LS K + + I ++ L+ I + G + + NLS
Sbjct: 347 IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406
Query: 193 --------------------------------------HHRQGLLAIFKSGGIPALVKLL 214
I ++ I L + +
Sbjct: 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM 466
Query: 215 SSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQIL 274
+ + + ++N+ + + G ++ ++ L I + L
Sbjct: 467 HNLSPNCKQQVVRIIYNITRSKN-FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRAL 525
Query: 275 AYGNQESKLIILASQGPVELVRIMRSYDYEKLLWC-------TSRVLKVLSVCSSNKPAI 327
+L P + + + + L+
Sbjct: 526 TR--------MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577
Query: 328 VEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQRVAAGLLCELA 387
+ LA + + ++ + T S +L+ +E +QR L+ +
Sbjct: 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTI---ENLMLDENVPLQRSTLELISNMM 634
Query: 388 QDKEGAETIEAEGATAPLTDLLH 410
+
Sbjct: 635 SHPLTIAAKFFNLENPQSLRNFN 657
Score = 42.9 bits (100), Expect = 6e-04
Identities = 31/271 (11%), Positives = 82/271 (30%), Gaps = 43/271 (15%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSN 63
++ L ++ + V ++N++ + + + + G + +++ L+
Sbjct: 459 ISFLK-REMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI 517
Query: 64 NTLILQDDADLA--------------TRAIPELIKLLNDEDQDDADLATR---------- 99
L + + AIP L +LL D +
Sbjct: 518 RILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577
Query: 100 -AIPELIKLLNDEDQDDADLATR------AIPELIKLLNDEDQVVVSQAAMMVHQLSKKE 152
A+ L L + E D ++ + L+ DE+ + ++ +
Sbjct: 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637
Query: 153 ASRHAIM------NSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF--KS 204
+ A S + LV + +D+E+ + N++ + K
Sbjct: 638 LTIAAKFFNLENPQSLRNFNILV-KLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKK 696
Query: 205 GGIPALVKLLSSPVESV--LFYAITTLHNLL 233
I +++ + ++ + + L
Sbjct: 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLF 727
Score = 38.6 bits (89), Expect = 0.012
Identities = 40/306 (13%), Positives = 92/306 (30%), Gaps = 40/306 (13%)
Query: 318 SVCSSNKPAIVEAGGMQALAMHLGHPSQRLVQNCLWTLRNLSDAGTKVSLLFNEIENIQR 377
+ N+ I+ + L + + S Q + + N++ + + L Q+
Sbjct: 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQL------AQQ 497
Query: 378 VAAGLLCELAQDKEGAETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRG 437
A ++ E +K+ LT +L N G+ IFK +
Sbjct: 498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL---------IFKKYSALNAIP 548
Query: 438 CLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDAD-------- 489
L E L + + + E +L A+ NL + +
Sbjct: 549 FLF--ELLPRSTPVDDNPLHNDEQIKLTDNYE--ALL--ALTNLASSETSDGEEVCKHIV 602
Query: 490 LATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIM------NSPQMVAALVHA 543
+ L+ DE+ + ++ + + A S + LV
Sbjct: 603 STKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILV-K 661
Query: 544 ISNSNDLETTKGAVGTLHNLSHHRQGLLAIF--KSGGIPALVKLLSSPVESV--LFYAIT 599
+ +D+E+ + N++ + K I +++ + ++ + +
Sbjct: 662 LLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLM 721
Query: 600 TLHNLL 605
L
Sbjct: 722 LFFGLF 727
Score = 36.7 bits (84), Expect = 0.040
Identities = 50/354 (14%), Positives = 117/354 (33%), Gaps = 52/354 (14%)
Query: 165 VAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 224
++ L ++ + V ++N++ + + + + G + +++ L++ +
Sbjct: 459 ISFLK-REMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI 517
Query: 225 AITTLHNLLLHQEGSKMAV-----------RLAGGLQKMVLLLGRNNVKFLAIVTDCLQI 273
I L ++M + + + LL R+ + + QI
Sbjct: 518 RILGCRAL------TRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571
Query: 274 LAYGNQESKLII--LASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVEAG 331
N E+ L + LAS + + + K+ W T L + N P ++
Sbjct: 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL----MLDENVP--LQRS 625
Query: 332 GMQALAMHLGHPSQRLVQNCLWT-LRNLSDAGTKVSLLFNEIENIQRVAAGLLCELAQDK 390
++ ++ + HP + ++L + V LL QR A + +A
Sbjct: 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685
Query: 391 EGA--ETIEAEGATAPLTDLLHSRNEGVEILIQGVHKIFKIHKINIHRGCLMFPETLEEG 448
E + + + + + +E+ R ++F E
Sbjct: 686 PLIAKELLTKKELIENAIQVFADQIDDIEL---------------RQRLLMLFFGLFEVI 730
Query: 449 IEIPSTQFDTAQPTAVQRLTEPSQMLKHAVVNLINYQDDADLATRAIPELIKLL 502
+ + V L + +Q LK A+ + D + AIP ++ +
Sbjct: 731 PDNGT--------NEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVILAKI 776
Score = 33.2 bits (75), Expect = 0.50
Identities = 23/214 (10%), Positives = 57/214 (26%), Gaps = 44/214 (20%)
Query: 477 AVVNLINYQDDADLATRAIPEL----IKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMN 532
+ + L+ L + +L I ++ V + + LS K + + I +
Sbjct: 314 SALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRS 373
Query: 533 SPQMVAALVHAISNSNDLETTKGAVGTLHNLS---------------------------- 564
+ L+ I + G + + NLS
Sbjct: 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAAD 433
Query: 565 -----------HHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKM 613
I ++ I L + + + + + ++N+ +
Sbjct: 434 KVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN-FIP 492
Query: 614 AVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILA 647
+ G ++ ++ L I + L
Sbjct: 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526
Score = 30.1 bits (67), Expect = 4.5
Identities = 40/333 (12%), Positives = 82/333 (24%), Gaps = 76/333 (22%)
Query: 4 VAALVHAISNSNDLETTKGAVGTLHNLS-------------------------------- 31
L+ I + G + + NLS
Sbjct: 378 TEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA 437
Query: 32 -------HHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNTLILQDDA-DLATR------ 77
I ++ I L + + I+ +
Sbjct: 438 EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ 497
Query: 78 -AIPELIKLLNDEDQDDADLATRAIPELIKLL---NDEDQDDADLATRAIPELIKLLNDE 133
A+ +++ L ++ + L ++L N A AIP L +LL
Sbjct: 498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRS 557
Query: 134 DQVVVS--------------QAAMMVHQL-SKKEASRHAIMNSPQMVAALVHAISN---S 175
V + +A + + L S + + + I N
Sbjct: 558 TPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617
Query: 176 NDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPA-------LVKLLSSPVESVLFYAITT 228
++ + + + N+ H + A F + P LVKLL
Sbjct: 618 ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677
Query: 229 LHNLLLHQEG-SKMAVRLAGGLQKMVLLLGRNN 260
N+ +K + ++ + +
Sbjct: 678 FANIATTIPLIAKELLTKKELIENAIQVFADQI 710
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 43.4 bits (102), Expect = 3e-04
Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 50/248 (20%)
Query: 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATRAI-------------PELIKLLNDE 111
L+L + D+ + LN Q LA + E+ KLL
Sbjct: 95 MLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTS 154
Query: 112 D---------------QDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK--EAS 154
+ + +L +P LLN+++ V+ + +++ ++ ++ +
Sbjct: 155 NSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214
Query: 155 RHAIMNSPQMVAALVHAISNSNDLETTKGAV----------GTLHNL----SHHRQGLLA 200
H PQ+V L + I + E + L L + +
Sbjct: 215 AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMND 274
Query: 201 IFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNN 260
I + + + ++L+ + T+ ++ +A+ + G LL N
Sbjct: 275 ILAQ--VATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILG----RFLLNNDKN 328
Query: 261 VKFLAIVT 268
++++A+ +
Sbjct: 329 IRYVALTS 336
Score = 34.1 bits (78), Expect = 0.28
Identities = 24/173 (13%), Positives = 65/173 (37%), Gaps = 22/173 (12%)
Query: 484 YQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK--EASRHAIMNSPQMVAALV 541
+ +L +P LLN+++ V+ + +++ ++ ++ + H PQ+V L
Sbjct: 170 IRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILK 229
Query: 542 HAISNSNDLETTKGAV----------GTLHNL----SHHRQGLLAIFKSGGIPALVKLLS 587
+ I + E + L L + + I + +
Sbjct: 230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQ--VATNTETSK 287
Query: 588 SPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVT 640
+ ++L+ + T+ ++ +A+ + G LL N++++A+ +
Sbjct: 288 NVGNAILYETVLTIMDIKSESGLRVLAINILG----RFLLNNDKNIRYVALTS 336
Score = 31.4 bits (71), Expect = 1.6
Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 33/230 (14%)
Query: 488 ADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAIS-- 545
+++ E+ KLL + + +AA+ + +K P+++ + A
Sbjct: 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK---------VPELMEMFLPATKNL 187
Query: 546 -NSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVL---------- 594
N + +V L + +LA F+ +P LV++L + + S
Sbjct: 188 LNEKNHGVLHTSVVLLTEMCERSPDMLAHFRK-LVPQLVRILKNLIMSGYSPEHDVSGIS 246
Query: 595 --FYAITTLHNL-LLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQ 651
F + L L +L + + + L ++ + AI+ + + +
Sbjct: 247 DPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS 306
Query: 652 ESKLIILASQGPVELVRIMRSYDYEKLLWCTSRVLKVLSVCSSNKPAIVE 701
ES L +LA L R + + D L L V+
Sbjct: 307 ESGLRVLAIN---ILGRFLLNNDKN----IRYVALTSLLKTVQTDHNAVQ 349
Score = 29.5 bits (66), Expect = 7.0
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 24/153 (15%)
Query: 459 AQPTAVQRLTEPSQMLKH----AVVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAA 514
Q ++ + K + L++ + D + + LN Q V A
Sbjct: 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQD--VHLLMTNCIKNDLNHSTQFVQGLA- 127
Query: 515 MMVHQLSKKEASRHAIMNSPQMVAAL---VHAISNSNDLETTKGAVGTLHNLSHHRQGLL 571
+ L M S +M L V + +++ K A ++ L+
Sbjct: 128 --LCTLGC--------MGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM 177
Query: 572 AIFKSGGIPALVKLLSSPVESVLFYAITTLHNL 604
+F +PA LL+ VL ++ L +
Sbjct: 178 EMF----LPATKNLLNEKNHGVLHTSVVLLTEM 206
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Length = 26
Score = 36.9 bits (84), Expect = 7e-04
Identities = 17/25 (68%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 796 SVNMWQQQNYLVDSGIHSGVNTNAP 820
+V+ WQQQ+YL DSGIHSG T AP
Sbjct: 3 AVSHWQQQSYL-DSGIHSGATTTAP 26
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 41.0 bits (96), Expect = 0.001
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 27/178 (15%)
Query: 70 DDADLATRAI-------PELIKLLNDEDQDDADLATRAIPE--LIKLLNDEDQDDADLAT 120
D RAI L L+ D D+ +P L L+ DED++
Sbjct: 60 ADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVA 119
Query: 121 RAIPE--LIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDL 178
+P L ++ D D +V + ++ R Q+ + +
Sbjct: 120 DRLPLEQLEQMAADRDYLVRAYVV---QRIPPGRLFRFMRDEDRQVRKLVAKRLPEE--- 173
Query: 179 ETTKGAVGTLHNLSHHRQGL--LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLL 234
+L ++ + + L++LL P +V A+ L
Sbjct: 174 --------SLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEAL 223
Score = 31.0 bits (70), Expect = 1.8
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 102 PELI-KLLNDEDQDDADLATRA--IPELIKLLNDEDQVVVSQAA 142
P L + L D + +A R + L L+ D D+VV A
Sbjct: 52 PHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVA 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 40.6 bits (94), Expect = 0.002
Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 37/252 (14%)
Query: 435 HRGCLMFPETLEEGIEIPSTQFDTAQPT-----AVQRLTEPSQMLKHAVVNL---INYQD 486
FPE P+ D A P AV RL L+ + + + Y D
Sbjct: 28 PFASANFPEPRRA----PTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSGYYLD 83
Query: 487 DADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISN 546
+L+ E+++ +E ++ QLS + V A++ + +
Sbjct: 84 T-ELSLEEQREMLEGFYEEISKGRKPTLILRTQLSVR-------------VNAILEKLYS 129
Query: 547 SNDLETTKGAVGTLHNLSHHRQGLLAIF-KSGGIPALVKLLSSPVESVLFYAITTLHNLL 605
S+ E + ++ +L + + L+ F S G+ L+++ ++ + Y + L L+
Sbjct: 130 SSGPEL-RRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLM 188
Query: 606 LHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAIVTDCLQILAYGNQESKLIILASQGPVE 665
L +G V + +Q + L + +V L++L + +
Sbjct: 189 LFVDGMLGVVAHSDTIQWLYTLCASLSRL---VVKTALKLLL------VFVEYSENNAPL 239
Query: 666 LVRIMRSYDYEK 677
+R + S
Sbjct: 240 FIRAVNSVASTT 251
Score = 34.8 bits (79), Expect = 0.13
Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 147 QLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF-KSG 205
++ + V A++ + +S+ E + ++ +L + + L+ F S
Sbjct: 102 ISKGRKPTLILRTQLSVRVNAILEKLYSSSGPEL-RRSLFSLKQIFQEDKDLVPEFVHSE 160
Query: 206 GIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLA 265
G+ L+++ ++ + Y + L L+L +G V + +Q + L +
Sbjct: 161 GLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRL--- 217
Query: 266 IVTDCLQILAYGNQESKLIILASQGPVELVRIMRSYDYEK 305
+V L++L + + +R + S
Sbjct: 218 VVKTALKLLL------VFVEYSENNAPLFIRAVNSVASTT 251
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 37.9 bits (87), Expect = 0.015
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 24 VGTLHNLSHHRQGLLAIFKSGGIPALVKLLSKTLVTASSNNT---------LILQDDADL 74
+G+ H+ HH GL+ V L ++++ LI+ D L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTTSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTL 60
Query: 75 ATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDED 134
+ E+I D+ + I E K D +L + I L LL DE+
Sbjct: 61 LDNFLDEIIAFQADKSIEVRKFVIGFIEEACK-------RDIELLLKLIANLNMLLRDEN 113
Query: 135 QVVVSQA 141
VV +A
Sbjct: 114 VNVVKKA 120
Score = 29.8 bits (66), Expect = 4.4
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 461 PTAVQRLTEPSQMLKHAVVNLIN--YQDDADLATRAIPELIKLLNDEDQVVVSQA 513
+ + S ++ V+ I + D +L + I L LL DE+ VV +A
Sbjct: 66 DEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 37.1 bits (85), Expect = 0.018
Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 29/190 (15%)
Query: 66 LILQDDADLATRAIPELIKLLNDEDQDDADLATRA-IPELIKLLNDEDQDDADLATRAIP 124
L +DD RA L ++L D D + + I L+ E++ A RA+
Sbjct: 41 LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALG 100
Query: 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKE----------ASRHAIMNSPQMVAALVHAISN 174
L+K + + + A +V L + S+ + ++V ++ +
Sbjct: 101 YLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVV 160
Query: 175 SNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVK--------LLSSPVESVLFYAI 226
S DL TK A L L + S + LL + E ++ A+
Sbjct: 161 SPDLY-TKVAGFCL---------FLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELAL 210
Query: 227 TTLHNLLLHQ 236
L L
Sbjct: 211 DVLEKALSFP 220
Score = 30.6 bits (68), Expect = 2.5
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 72 ADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRA-IPELIKLL 130
A RA+ +++L + DD RA L ++L D D + + I L
Sbjct: 28 ALEDKRALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL 84
Query: 131 NDEDQVVVSQAA 142
+ E++ V +A
Sbjct: 85 SQENEKVTIKAL 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 37.4 bits (86), Expect = 0.019
Identities = 31/227 (13%), Positives = 69/227 (30%), Gaps = 39/227 (17%)
Query: 67 ILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPEL 126
+ A+ L K + ++ A RA+ ++ D+ + +
Sbjct: 94 EMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT---------DSTMLQAIERYM 144
Query: 127 IKLLNDEDQVVVSQAAMMVHQLSKK---------EASRHAIMNSPQMVA----ALVHAIS 173
+ + D+ V S A + L K ++ A + MV L++ +
Sbjct: 145 KQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVR 204
Query: 174 NSNDLETTK--------------GAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVE 219
++ L +K + S + S + L + E
Sbjct: 205 KNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHE 264
Query: 220 SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGRNNVKFLAI 266
V++ A + + N L +K LQ + +++ A+
Sbjct: 265 MVVYEAASAIVN--LPGCSAKELAPAVSVLQLF-CSSPKAALRYAAV 308
Score = 36.2 bits (83), Expect = 0.048
Identities = 31/257 (12%), Positives = 81/257 (31%), Gaps = 66/257 (25%)
Query: 28 HNLSHHRQGLLAIFKSGGIPALVKLLSKTLVT-ASSNNTLILQDDADLATRAIPELIKLL 86
++ + R L I + I V +++ +L + A RA+ ++
Sbjct: 80 NDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSY----RGPAVRALCQIT--- 132
Query: 87 NDEDQDDADLATRAIPELIKLLNDED---------------QDDADLATRAIPELIKLLN 131
D+ + + + + D+ + D+ R + E + +
Sbjct: 133 ------DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAAS 186
Query: 132 DEDQVVVSQAAMMVHQLSKKEA----------SRHAIMN--------------------- 160
++ +V A +++ + K + +RH + +
Sbjct: 187 SDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS 246
Query: 161 -SPQMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVE 219
+ + + N +++ A + NL L + + L SSP
Sbjct: 247 RDSPLFDFIESCLRNKHEM-VVYEAASAIVNLPGCSAKEL----APAVSVLQLFCSSPKA 301
Query: 220 SVLFYAITTLHNLLLHQ 236
++ + A+ TL+ + +
Sbjct: 302 ALRYAAVRTLNKVAMKH 318
Score = 30.4 bits (68), Expect = 2.8
Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 38/167 (22%)
Query: 475 KHAVVNLIN-YQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEA-------- 525
A+V+ ++ + D+ R + E + + ++ +V A +++ + K +
Sbjct: 157 SSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMIS 216
Query: 526 --SRHAIMN----------------------SPQMVAALVHAISNSNDLETTKGAVGTLH 561
+RH + + + + + N +++ A +
Sbjct: 217 KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEM-VVYEAASAIV 275
Query: 562 NLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQ 608
NL L + + L SSP ++ + A+ TL+ + +
Sbjct: 276 NLPGCSAKEL----APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318
Score = 29.3 bits (65), Expect = 6.5
Identities = 31/248 (12%), Positives = 75/248 (30%), Gaps = 34/248 (13%)
Query: 418 ILIQGVHKIFKIHKINIHRGCLMFPETLEEGIEIPSTQFDTAQPTAVQRLTEPSQMLKHA 477
+ K+F+ + + R C + + + + + + +T +
Sbjct: 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSC----IAEDVIIVTSSLTKDMTGKEDSYRGP 123
Query: 478 VVNLINYQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK---------EASRH 528
V + D+ + + + + D+ V S A + L K ++
Sbjct: 124 AVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQE 183
Query: 529 AIMNSPQMVA----ALVHAISNSNDLETTK--------------GAVGTLHNLSHHRQGL 570
A + MV L++ + ++ L +K + S +
Sbjct: 184 AASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE 243
Query: 571 LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAGGLQKMVLLLGR 630
S + L + E V++ A + + N L +K LQ +
Sbjct: 244 DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN--LPGCSAKELAPAVSVLQLF-CSSPK 300
Query: 631 NNVKFLAI 638
+++ A+
Sbjct: 301 AALRYAAV 308
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 37.6 bits (87), Expect = 0.023
Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 58/258 (22%)
Query: 65 TLILQDDADLATRAIPELIKLLNDEDQDDADLATRAI-------------PELIKLLNDE 111
++++ +++L + L + LA I E+ K+L
Sbjct: 99 SVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAG 158
Query: 112 DQD-----------------DADLATRA--IPELIKLLNDEDQVVVSQAAMMVHQLSKK- 151
D DL ++ LLND+ VV+ A ++ L++K
Sbjct: 159 DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218
Query: 152 -EASRHAIMNSPQMVAALVHAISNSNDLETTKGA------VGTLHNLSHHRQGLLAIFKS 204
E + ++ + ++ +V + S T V L L + +
Sbjct: 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRG 278
Query: 205 GGIPALVKLLSSPVE--------------SVLFYAITTLHNLLLHQEGSKMAVRLAGGLQ 250
L +L+ E +VLF AI+ + + A G
Sbjct: 279 RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLG--- 335
Query: 251 KMVLLLGRNNVKFLAIVT 268
L N+++LA+ +
Sbjct: 336 -QFLQHRETNLRYLALES 352
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 35.0 bits (80), Expect = 0.094
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 66 LILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPE 125
+L A+LA + ++ L +D + + + ++ K +L I
Sbjct: 42 TVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK-------VKVELLPHVINV 94
Query: 126 LIKLLNDEDQVVVSQA 141
+ LL D V+ +
Sbjct: 95 VSMLLRDNSAQVIKRV 110
Score = 29.2 bits (65), Expect = 5.5
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 461 PTAVQRLTEPSQMLKHAVVNLINY--QDDADLATRAIPELIKLLNDEDQVVVSQA 513
+ + + + ++ VV + + +L I + LL D V+ +
Sbjct: 56 ESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 34.6 bits (79), Expect = 0.11
Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 3/152 (1%)
Query: 2 EMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLL--SKTLVT 59
+V+AL I+ +++ A L L+ + + S +P+L++ K V
Sbjct: 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVV 115
Query: 60 ASSNNTLILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLA 119
+ + + +++ L++++ I + + L
Sbjct: 116 TALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK 175
Query: 120 TRAIPELIKLLNDEDQVVVSQAAMMVHQLSKK 151
L+K LN+ D V +A + L K
Sbjct: 176 L-LTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206
Score = 34.6 bits (79), Expect = 0.12
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 12/167 (7%)
Query: 67 ILQDDADLATRAIPELIKLLNDEDQDDAD--LATRAIPELIKLLNDEDQDDADLATRAIP 124
+L D L L+ L D++ L A L L + ++ A+ +P
Sbjct: 42 LLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVP 101
Query: 125 ELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSNDLETTKGA 184
L++ ++ VV+ + + + ++V ++SN N
Sbjct: 102 SLLEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKN-PSVKSET 153
Query: 185 VGTLHNL--SHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTL 229
+ L +LVK L+ P +V + L
Sbjct: 154 ALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEAL 200
Score = 30.0 bits (67), Expect = 3.2
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 24/110 (21%)
Query: 37 LLAIFKSGGIPALVKLLSKTLVTASSN----------NTLILQDDADLATRA----IPEL 82
+ AI+ S + A + + ++L + + L L + L
Sbjct: 122 IDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 83 IKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLND 132
+K LN+ D D + A+ LIKL+ D +A+ L+ ++
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGD----------KAVTPLLADVDP 221
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 33.1 bits (75), Expect = 0.39
Identities = 17/149 (11%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 81 ELIKLLNDEDQDDAD-----LATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQ 135
L+ + Q DA+ LA +++ + L D + L+ ++
Sbjct: 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG-FSKDYVSLVFTPLLDRTKEKKP 118
Query: 136 VVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND---LETTKGAVGTLHNLS 192
V+ + + K + + M+ ++ + + +E T+ ++
Sbjct: 119 SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178
Query: 193 HHRQGLLAIFKSGGIPALVKLLSSPVESV 221
L K +P ++++++ ++
Sbjct: 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAI 207
Score = 29.6 bits (66), Expect = 4.0
Identities = 9/102 (8%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 495 IPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVHAISNSND---LE 551
L+ ++ V+ + + K + + M+ ++ + + +E
Sbjct: 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRME 165
Query: 552 TTKGAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESV 593
T+ ++ L K +P ++++++ ++
Sbjct: 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAI 207
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 30.2 bits (68), Expect = 3.7
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 70 DDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKL 129
D + + ++ L E D L + + IKLL + ++ A+ +++
Sbjct: 485 VDTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIKLL-----EVGKISKDALRDIVAC 539
Query: 130 LNDED 134
+ DE
Sbjct: 540 MADEG 544
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 30.1 bits (67), Expect = 4.5
Identities = 28/255 (10%), Positives = 65/255 (25%), Gaps = 41/255 (16%)
Query: 45 GIPALVKLLSKTLVTASSNNTLILQDDADLATRAIPELI---------------KLLNDE 89
+ L+ LLS + + L + + + + + L +
Sbjct: 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD 137
Query: 90 DQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLS 149
Q ++ + L+ + + + + L N E ++ +L+
Sbjct: 138 FQ-TVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELA 196
Query: 150 KKEASRHAIMNSP----QMVAALVHAISNSNDLETTKGAVGTLHNLSHHRQGLLAIF--- 202
R I + ++ ++S + LL I+
Sbjct: 197 VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 256
Query: 203 ------------KSGGIPALVKLLS-SPVESVLFYAITTLHNLLLHQEGSKMA-----VR 244
L+KL+ + E V I+ + + +
Sbjct: 257 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL 316
Query: 245 LAGGLQKMVLLLGRN 259
L L + L R
Sbjct: 317 LGNALPTVQSLSERK 331
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer,
replication, signaling protein; HET: DNA MSE; 2.10A
{Escherichia coli} SCOP: d.292.1.1
Length = 188
Score = 28.9 bits (65), Expect = 5.2
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 79 IPELIKLLNDEDQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIK---------- 128
IP +K+ ++ +A L +L D D + RA+P ++
Sbjct: 59 IPLRLKV----SAEEKSALEKAQSALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPE 114
Query: 129 LLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAAL 168
L+ + V + + +++ S HA + Q + L
Sbjct: 115 LIGYLAKQSVFEPGNIAQWIARNLMSEHAQWSMAQAITLL 154
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 29.7 bits (67), Expect = 5.8
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 102 PELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQL 148
P + L D R + ++ EDQ+ + + +
Sbjct: 165 PAVWGGLVDVPAGSVAELARHLAAVVSGGAGEDQLALRADGVYGRRW 211
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 29.3 bits (66), Expect = 7.8
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 102 PELIKLLNDEDQDDADLATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHA 157
P+ L D + A + L+ EDQ+ + + ++ +L+ +
Sbjct: 176 PDRWGGLIDLPETVDTRAAARLTGLLADAGGEDQLAIRGSGVLARRLAHAAPAVPG 231
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 28.6 bits (65), Expect = 9.3
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 61 SSNNT--L-ILQDDADLATRAIPELIKLLNDEDQDDADLATRAIPELIKL---LNDEDQD 114
SS NT L LQ L +L+ + ++ D + + +P +K+ L++E+
Sbjct: 174 SSPNTPGLRTLQYGEALD-----DLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELI 228
Query: 115 D-ADLATR 121
AD R
Sbjct: 229 QVADSLVR 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.376
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,204,207
Number of extensions: 877463
Number of successful extensions: 3325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2045
Number of HSP's successfully gapped: 324
Length of query: 986
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 883
Effective length of database: 3,825,930
Effective search space: 3378296190
Effective search space used: 3378296190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.2 bits)