BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15606
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1POC|A Chain A, Crystal Structure Of Bee-venom Phospholipase A2 In A
          Complex With A Transition-state Analogue
          Length = 134

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 15 MLVPGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSH 74
          ++ PGT WCG+GN ++G  +LG F  TD CCR HD C   +     ++   N    T   
Sbjct: 1  IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLS 60

Query: 75 CTCDQR 80
          C CD +
Sbjct: 61 CDCDDK 66


>pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 2   STLDRLKLGLSNLMLVPG 19
           +TLD +K GL+NL  VPG
Sbjct: 298 ATLDAIKAGLANLKAVPG 315


>pdb|2OSH|A Chain A, Crystal Structure Of Natratoxin, A Snake Spla2 That
          Blocks A-Type K+ Channel
          Length = 119

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 22 WCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSH 74
          +CG G   T   DL      D CC+ HD+C       S  + YF    +  S 
Sbjct: 27 YCGKGGSGTPVDDL------DRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQ 73


>pdb|1PSH|A Chain A, Crystal Structure Of Phospholipase A2 From Indian Cobra
          Reveals A Trimeric Association
 pdb|1PSH|B Chain B, Crystal Structure Of Phospholipase A2 From Indian Cobra
          Reveals A Trimeric Association
 pdb|1PSH|C Chain C, Crystal Structure Of Phospholipase A2 From Indian Cobra
          Reveals A Trimeric Association
 pdb|1A3F|A Chain A, Phospholipase A2 (Pla2) From Naja Naja Venom
 pdb|1A3F|B Chain B, Phospholipase A2 (Pla2) From Naja Naja Venom
 pdb|1A3F|C Chain C, Phospholipase A2 (Pla2) From Naja Naja Venom
 pdb|1A3D|A Chain A, Phospholipase A2 (Pla2) From Naja Naja Venom
          Length = 119

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 22 WCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSH 74
          +CG G   T   DL      D CC+ HD+C       S  + YF    +  S 
Sbjct: 27 YCGRGGSGTPVDDL------DRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQ 73


>pdb|1POB|A Chain A, Crystal Structure Of Cobra-Venom Phospholipase A2 In A
          Complex With A Transition-State Analogue
 pdb|1POB|B Chain B, Crystal Structure Of Cobra-Venom Phospholipase A2 In A
          Complex With A Transition-State Analogue
 pdb|1POA|A Chain A, Interfacial Catalysis: The Mechanism Of Phospholipase A2
          Length = 118

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 22 WCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSH 74
          +CG G   T   DL      D CC+ HD+C       S  + YF    +  S 
Sbjct: 27 YCGRGGSGTPVDDL------DRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQ 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,668,180
Number of Sequences: 62578
Number of extensions: 94485
Number of successful extensions: 297
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 66
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)