RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15606
(80 letters)
>gnl|CDD|153093 cd04704, PLA2_bee_venom_like, PLA2_bee_venom_like: A sub-family
of Phospholipase A2, similar to bee venom PLA2. PLA2
is a super-family of secretory and cytosolic enzymes;
the latter are either Ca dependent or Ca independent.
Enzymatically active PLA2 cleaves the sn-2 position of
the glycerol backbone of phospholipids; secreted PLA2s
have also been found to specifically bind to a variety
of soluble and membrane proteins in mammals, including
receptors. As a toxin, PLA2 is a potent presynaptic
neurotoxin which blocks nerve terminals by binding to
the nerve membrane and hydrolyzing stable membrane
lipids. The products of the hydrolysis cannot form
bilayers leading to a change in membrane conformation
and ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Bee venom PLA2 has fewer conserved disulfide bridges
than most canonical PLA2s.
Length = 97
Score = 92.7 bits (231), Expect = 1e-26
Identities = 35/64 (54%), Positives = 41/64 (64%)
Query: 17 VPGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSHCT 76
VPGTKWCG GN AT ++DLG+F TD CCR HD C I ++Y N + FT SHC
Sbjct: 3 VPGTKWCGPGNIATNYSDLGAFRETDKCCREHDHCPDIISAGEYKYGLTNTRLFTRSHCD 62
Query: 77 CDQR 80
CD R
Sbjct: 63 CDNR 66
>gnl|CDD|147789 pfam05826, Phospholip_A2_2, Phospholipase A2. This family
consists of several phospholipase A2 like proteins
mostly from insects.
Length = 99
Score = 81.6 bits (202), Expect = 4e-22
Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 16 LVPGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSHC 75
+ PGTKWCG GN A + DLG F TD CCR HD+C I +Y N PFT+SHC
Sbjct: 1 ITPGTKWCGTGNIAEDYGDLGEFDKTDRCCRTHDNCPDKIESGETKYGLTNFGPFTISHC 60
Query: 76 TCDQR 80
CDQR
Sbjct: 61 DCDQR 65
>gnl|CDD|153094 cd04705, PLA2_group_III_like, PLA2_group_III_like: A sub-family
of Phospholipase A2, similar to human group III PLA2.
PLA2 is a super-family of secretory and cytosolic
enzymes; the latter are either Ca dependent or Ca
independent. Enzymatically active PLA2 cleaves the sn-2
position of the glycerol backbone of phospholipids;
secreted PLA2s have also been found to specifically
bind to a variety of soluble and membrane proteins in
mammals, including receptors. As a toxin, PLA2 is a
potent presynaptic neurotoxin which blocks nerve
terminals by binding to the nerve membrane and
hydrolyzing stable membrane lipids. The products of the
hydrolysis cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers.
Length = 100
Score = 39.4 bits (92), Expect = 1e-05
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 36 GSFSSTDLCCRRHDSCQYTI-PGFSWRYKYFNMKPFTLSHCTCDQR 80
G F D CC +H C I P FS + N ++SHC CD R
Sbjct: 29 GEFKEPDRCCWKHKQCPGHIIPPFS-SDGHHNFHLHSVSHCDCDSR 73
>gnl|CDD|153092 cd00618, PLA2_like, PLA2_like: Phospholipase A2, a super-family
of secretory and cytosolic enzymes; the latter are
either Ca dependent or Ca independent. PLA2 cleaves the
sn-2 position of the glycerol backbone of phospholipids
(PC or phosphatidylethanolamine), usually in a
metal-dependent reaction, to generate lysophospholipid
(LysoPL) and a free fatty acid (FA). The resulting
products are either dietary or used in synthetic
pathways for leukotrienes and prostaglandins. Often,
arachidonic acid is released as a free fatty acid and
acts as second messenger in signaling networks.
Secreted PLA2s have also been found to specifically
bind to a variety of soluble and membrane proteins in
mammals, including receptors. As a toxin, PLA2 is a
potent presynaptic neurotoxin which blocks nerve
terminals by binding to the nerve membrane and
hydrolyzing stable membrane lipids. The products of the
hydrolysis (LysoPL and FA) cannot form bilayers leading
to a change in membrane conformation and ultimately to
a block in the release of neurotransmitters. PLA2 may
form dimers or oligomers.
Length = 83
Score = 37.2 bits (86), Expect = 7e-05
Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 18 PGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSC-------------QYTIPGFSWRYKY 64
P +CG G A TD CCR+HD C
Sbjct: 2 PYGCYCGPGGSACPSGQPVD--ETDRCCRKHDCCYDQISDGGCCDGCLSYSFSEGGVTCL 59
Query: 65 FNMKPFTLSHCTCDQR 80
N T SHC CD+R
Sbjct: 60 TNSDLCTRSHCDCDRR 75
>gnl|CDD|214508 smart00085, PA2c, Phospholipase A2.
Length = 117
Score = 28.7 bits (65), Expect = 0.14
Identities = 15/62 (24%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 18 PGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSHCTC 77
G C G G +G +TD CC HD C T +C
Sbjct: 21 YGDYGCYCGWGGSGT----PVDATDRCCFVHDCCYGKA---EKEGCNP---KTTTYSYSC 70
Query: 78 DQ 79
D
Sbjct: 71 DN 72
>gnl|CDD|106284 PRK13324, PRK13324, pantothenate kinase; Reviewed.
Length = 258
Score = 26.5 bits (58), Expect = 1.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 63 KYFNMKPFTLSHCTCD 78
KYFN+KPF +S T D
Sbjct: 80 KYFNIKPFFISMDTTD 95
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Reviewed.
Length = 453
Score = 26.1 bits (58), Expect = 2.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 3 TLDRLKLGLSNLMLVPG 19
TLD +K GL+NL VPG
Sbjct: 300 TLDAVKAGLANLKAVPG 316
>gnl|CDD|211984 TIGR04261, rSAM_GlyRichRpt, radical SAM/SPASM domain protein, GRRM
system. Members of this protein family are radical
SAM/SPASM domain proteins (see pfam04055 and TIGR04085)
related to anaeroboic sulfatase maturating enzymes and
the peptide modification enzyme PqqE. Members are found
primarily in Cyanobacteria adjacent to a short protein,
~150 residues, in which the last ~60 residues tends to
be repetitive and highly glycine-rich (see TIGR04260).
The arrangement suggests modifications to the repetitive
C-terminal region by this radical SAM domain enzyme, but
the purpose of this system on the whole is unknown.
Length = 363
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 23 CGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTI 55
CG G G+ + + G+F+S++ +C+Y I
Sbjct: 323 CGGGAGSNKYWENGTFNSSETQ-----ACRYRI 350
>gnl|CDD|215751 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).
Length = 269
Score = 24.6 bits (54), Expect = 6.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 7 LKLGLSNLMLVPGTKWCGYGNGAT 30
G +NL++V G W +GA
Sbjct: 152 RAAGPNNLIIVGGPSWSQNPDGAA 175
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.489
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,861,750
Number of extensions: 273211
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 11
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)