RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15606
         (80 letters)



>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera}
          SCOP: a.133.1.1
          Length = 134

 Score = 84.7 bits (209), Expect = 3e-23
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 15 MLVPGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSWRYKYFNMKPFTLSH 74
          ++ PGT WCG+GN ++G  +LG F  TD CCR HD C   +     ++   N    T   
Sbjct: 1  IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLS 60

Query: 75 CTCDQR 80
          C CD +
Sbjct: 61 CDCDDK 66


>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
          {Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
          Length = 130

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 21 KWCGYGNGATGFTDLGSFSSTDLCCRRHDSC 51
          K+CG     +G        + D CC  HD C
Sbjct: 38 KYCGILY--SGCPGERPCDALDACCMVHDHC 66


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.2 bits (52), Expect = 6.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 67 MKPFTLSH 74
           +P TLSH
Sbjct: 6  TRPLTLSH 13


>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
          venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
          a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
          3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
          1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
          1clp_A* ...
          Length = 122

 Score = 23.4 bits (50), Expect = 7.9
 Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 5/68 (7%)

Query: 18 PGTKWCGYGNGATGFTDLGSFSSTDLCCRRHDSCQYTIPGFSW-----RYKYFNMKPFTL 72
          P   +  YG             +TD CC  H  C   +           YK+ N      
Sbjct: 17 PVKNYGLYGCNCGVGGRGEPLDATDRCCFVHKCCYKKLTDCDSKKDRYSYKWKNKAIVCG 76

Query: 73 SHCTCDQR 80
           +  C Q 
Sbjct: 77 KNQPCMQE 84


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.139    0.489 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,256,469
Number of extensions: 57471
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 31
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)