BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15609
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/473 (23%), Positives = 211/473 (44%), Gaps = 64/473 (13%)
Query: 115 QSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTA 174
+S + Q K+ + + + +AL++A+ L ++ + P G+P K++
Sbjct: 26 ESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER---------ELPLFGIPIAVKDNIL 76
Query: 175 SKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNN 234
+G + ++ DA ++ERLK AGA+++G TN+ E + S T F T N
Sbjct: 77 VEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKN 136
Query: 235 PYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
P++L R GGSSGG +A V+ +P+ LG+D GGS R P +CGV G K T G ++ G+
Sbjct: 137 PWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGL 196
Query: 295 -GFRSGKEARTMVSAGPIVKHAEDILPFIKCLV-------------IPEKLHQLKLDRTH 340
F A ++ G + ED+ ++ + +PE ++K
Sbjct: 197 VAF-----ASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEVK----K 247
Query: 341 DLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALD----EITEVSAEKLENIKQFKKS 396
++K LK+ ++ + ++ P E A ++ L+ EI EVS L ++K
Sbjct: 248 EVKGLKIGLPKEFFEYELQPQVKE---AFENFIKELEKEGFEIKEVS---LPHVK----- 296
Query: 397 YALWRYWM---TKEPGNFAR-DLVNQEGEASWWRETIKIFLGMSDHTL-PAIMKLI---D 448
Y++ Y++ ++ N AR D V A +++ +++ D P + + I
Sbjct: 297 YSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGT 356
Query: 449 MHLPLPKDDWAQEQTDKLRKKLTD----VLADDGVLIFPSCPCPATYHYTTFFRPYNFAY 504
L D + K+R+ +T+ + V+ P+ P P
Sbjct: 357 FALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYL 416
Query: 505 WAIF----NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQ 553
I N+ G P +++P+ KDGLP+G Q++ ++ + ++ E++
Sbjct: 417 SDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDETTLLQISYLWEQK 468
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 184/449 (40%), Gaps = 68/449 (15%)
Query: 136 FSEALEEAKLLDKQIALDEIDFS------------------QKPFLGVPFTSKNSTASKG 177
EALE AK + AL +D + P G+P T K+ KG
Sbjct: 21 LEEALERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG 80
Query: 178 LNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYN 237
+ G K E+A V RL+ AGA+L TN E+ L N G N +
Sbjct: 81 MPTRAGT-KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALGITGENPWTGPVRNAVD 139
Query: 238 LSRTVGGSSGGESAIVSACGSPLG-LGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGF 296
SR GGSSGG SA+ A G L LGTD GGS R+P + GV G+K + G ++ +G
Sbjct: 140 PSRQAGGSSGG-SAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALP 198
Query: 297 RSGKEARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDL 356
S R+ AGP+ + D F+ ++ E + L+ + VF V P D
Sbjct: 199 LS----RSTDHAGPLTRSVRDAH-FLTEILAGE---SIPLEGVQN----PVFGV--PLDF 244
Query: 357 KVSPVSGEMIGAIRKC-VRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDL 415
+ G + +RK R L+++ + AE E + Y ++ + E
Sbjct: 245 ----LEGRLGVEVRKAFTRLLEDLPALRAEVREVSLPLEGVYEVYTRLVRYEAARIHEKA 300
Query: 416 VNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDW--AQEQTDKLRKKLTDV 473
+ + E G S P + + + L L + D+ A + + LR +L
Sbjct: 301 LKEHPE------------GFS----PQVREALLAGLALTEKDYRDAVAEREALRLELVKA 344
Query: 474 LADDGVLIFPSCPCPA------TYHYTTFFRPYNFAYWAI---FNVLGFPVVNVPVGLSK 524
L L+ P P PA + + + A+ + F++LG P + +P
Sbjct: 345 LRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFA-KV 403
Query: 525 DGLPLGVQIVATTNNDKLCIDVANYLEKQ 553
+G P+G+Q+V D + + +LE +
Sbjct: 404 EGXPVGLQVVGAYGEDGKVLALGGWLEAR 432
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 192/428 (44%), Gaps = 48/428 (11%)
Query: 162 FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLW 221
F G+P K++ + G+ + ++ + DA +V+++K AG +++G N+ E +
Sbjct: 58 FWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 117
Query: 222 SETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYG 281
S T F T NP++L R GGSSGG +A VSA LG+D GGS R P CGV G
Sbjct: 118 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVG 177
Query: 282 YKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRTH 340
YK T G ++ G+ F A ++ GPI K D ++ + ++ ++R
Sbjct: 178 YKPTYGLVSRYGLVAF-----ASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKV 232
Query: 341 D-LKQLKVFYVEQPGDLKVSPVSGEMI------GAIRKCVRALDEITEVSAEKLENIKQF 393
D L +++ E +K + V E+ G + AL + + A K+E +K
Sbjct: 233 DFLSEIE----EGVSGMKFA-VPEEIYEHDIEEGVSERFEEALKLLERLGA-KVERVKIP 286
Query: 394 KKSYALWRYWM---TKEPGNFARD-------LVNQEGEASWWRETIKIFLGMSDHTLPAI 443
Y++ Y++ + N AR + ++G + +T + G + I
Sbjct: 287 HIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNV--GFGEEVRRRI 344
Query: 444 MKLIDMHLPLPKDDWAQEQTDKLRKKLTD----VLADDGVLIFPSCPCPATYHYTTFFRP 499
M + L + + K+R+K++D VL+ ++ P+ P A + P
Sbjct: 345 M-IGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTA-FKIGEIKDP 402
Query: 500 YNFAYWAIF----NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSV 555
+ IF N+ G P ++VP G S + LP+GVQ++ D +A +EK S
Sbjct: 403 LTYYLMDIFTIPANLAGLPAISVPFGFSNN-LPVGVQVIGRRFADGKVFRIARAIEKNS- 460
Query: 556 IGWKPPFN 563
P+N
Sbjct: 461 -----PYN 463
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 214/483 (44%), Gaps = 45/483 (9%)
Query: 94 IFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVV--DNRFSEALEEAKLLDKQIA 151
+ H I +V + + Q+ +K++++++ + + + + R LEEA+ +D +
Sbjct: 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERL---LEEAEAVDPGL- 56
Query: 152 LDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLG 211
P G+ K++ A++GL + G ++ +A V RLK+ GA++LG
Sbjct: 57 ---------PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLG 107
Query: 212 VTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCR 271
TN+ E + S T + F T NP++ R GGSSGG +A ++A +PL LG+D GGS R
Sbjct: 108 KTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVR 167
Query: 272 MPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIPEKL 331
P +CGVYG K T G ++ G+ A ++ GP+ + D+ + P+ L
Sbjct: 168 QPAAFCGVYGLKPTYGRVSRFGL----IAYASSLDQIGPMARSVRDLALLMDAAAGPDPL 223
Query: 332 HQLKLDRTHDLKQLKVFYVEQP-GDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENI 390
LD ++ +E P L++ V + G RAL+E +V E ++
Sbjct: 224 DATSLDLPPRFQE----ALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSV 279
Query: 391 KQF---KKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLGMSDHT-----LPA 442
++ AL Y++ P + +L +G R + GM + T L
Sbjct: 280 REVSWPSLPQALAAYYILA-PAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEV 338
Query: 443 IMKLIDMHLPLPKDDW------AQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTF 496
+++ L + AQ +L+ + + + +L+ P+ P PA + +
Sbjct: 339 KRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPA-FPFGAR 397
Query: 497 FRPYNF----AYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
P Y N+ G P ++ P G LP+G+Q++A D+ + A E+
Sbjct: 398 RDPLAMYREDLYTVGANLTGLPALSFPAGFEGH-LPVGLQLLAPWGEDERLLRAALAFEE 456
Query: 553 QSV 555
+
Sbjct: 457 ATA 459
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Query: 108 LRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPF 167
+ +++ ++ + ++ VN +IN+V+ F +A E++L + PF GVP+
Sbjct: 22 ISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL------------ASGPFAGVPY 69
Query: 168 TSKNSTA-SKG-LNFS-IGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSET 224
K+ T S+G +N S I +K + DAY V+R+++AG +LLG TN PE+ T
Sbjct: 70 LLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTT 129
Query: 225 RNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKL 284
+G T NP+NL R+VGGSSGG A V+A SP+ G D GS R+P CGV G K
Sbjct: 130 EPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVCGVVGLKP 189
Query: 285 TTGFIN 290
T G I+
Sbjct: 190 TRGRIS 195
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 502 FAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLE 551
A+ FNV G P +++P+G+S DG+P+GVQIVA + L + VA LE
Sbjct: 422 LAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLE 471
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Query: 108 LRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPF 167
+ +++ ++ + ++ VN +IN+V+ F +A E++L + PF GVP+
Sbjct: 22 ISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL------------ASGPFAGVPY 69
Query: 168 TSKNSTA-SKG-LNFS-IGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSET 224
K+ T S+G +N S I +K + DAY V+R+++AG +LLG TN PE+ T
Sbjct: 70 LLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTT 129
Query: 225 RNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKL 284
+G T NP+NL R+VGGSSGG A V+A SP+ G D G+ R+P CGV G K
Sbjct: 130 EPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKP 189
Query: 285 TTGFIN 290
T G I+
Sbjct: 190 TRGRIS 195
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 502 FAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLE 551
A+ FNV G P +++P+G+S DG+P+GVQIVA + L + VA LE
Sbjct: 422 LAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLE 471
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 180/418 (43%), Gaps = 40/418 (9%)
Query: 162 FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLW 221
F G+P K++ + G + ++ + DA +V++ K AG +++G N+ E
Sbjct: 59 FWGIPVAIKDNILTLGXRTTCASRILENYESVFDATVVKKXKEAGFVVVGKANLDEFAXG 118
Query: 222 SETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYG 281
S T F T NP++L R GGSSGG +A VSA LG+D GGS R P CGV G
Sbjct: 119 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVG 178
Query: 282 YKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRTH 340
YK T G ++ G+ F A ++ GPI K D + + ++ ++R
Sbjct: 179 YKPTYGLVSRYGLVAF-----ASSLDQIGPITKTVRDAAILXEIISGRDENDATTVNRKV 233
Query: 341 DLKQLKVFYVEQPGDLKVSPVSGEMI------GAIRKCVRALDEITEVSAEKLENIKQFK 394
D + +E+ V E+ G + AL + + A K+E +K
Sbjct: 234 DF----LSEIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLGA-KVERVKIPH 288
Query: 395 KSYALWRYWM---TKEPGNFARD-------LVNQEGEASWWRETIKIFLGMSDHTLPAIM 444
Y++ Y++ + N AR + ++G + +T + G + +
Sbjct: 289 IKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREXYXKTRNVGFG---EEVRRRI 345
Query: 445 KLIDMHLPLPKDDWAQEQTDKLRKKLTD----VLADDGVLIFPSCPCPATYHYTTFFRPY 500
+ L + + K+R+K++D VL+ ++ P+ P A + P
Sbjct: 346 XIGTFTLSAAYYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTA-FKIGEIKDPL 404
Query: 501 NFAYWAIF----NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQS 554
+ IF N+ G P ++VP G S + LP+GVQ++ D +A +EK S
Sbjct: 405 TYYLXDIFTIPANLAGLPAISVPFGFSNN-LPVGVQVIGRRFADGKVFRIARAIEKNS 461
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 126/512 (24%), Positives = 211/512 (41%), Gaps = 65/512 (12%)
Query: 85 AISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAK 144
+I E V + D K+ P S + + IE+ + I S + A+++A+
Sbjct: 2 SIRYESVENLLTLIKDKKIKP-----SDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQ 56
Query: 145 LLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKS 204
LD+ A D++D G+P K++ + GL + + ++ ++E+L
Sbjct: 57 ELDELQAKDQMD---GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHK 113
Query: 205 AGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGT 264
A+L+G N+ E + T F +T NP++ GGSSGG +A V+A PL LG+
Sbjct: 114 ENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173
Query: 265 DIGGSCRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAED---ILP 320
D GGS R P YCGV G K T G ++ G+ F A ++ GP+ ++ +D +L
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAF-----ASSLDQIGPLTRNVKDNAIVLE 228
Query: 321 FIKCLVIPEKLHQL--KLDRTHDL-KQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALD 377
I + + +D T ++ K +K V P + V+ ++ A++ V L
Sbjct: 229 AISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLK 288
Query: 378 EITEVSAE-KLENIKQFKKSYAL---------------WRYWMTKEPGNFARDLVNQEGE 421
+ V E L N K SY + RY + + +L
Sbjct: 289 SLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRS 348
Query: 422 ASWWRET-IKIFLG---MSDHTLPAIMKLIDMHLPLPKDDWAQEQTDKLRKKLTDVLADD 477
+ +E +IFLG +S A K L K+D+ + V +
Sbjct: 349 EGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDK------------VFENY 396
Query: 478 GVLIFPSCPCPATYHYTTFFRPYNFAYWAIF----NVLGFPVVNVPVGLSKDGLPLGVQI 533
V++ P+ P A P + N+ G P ++VP G S +G P+G+Q
Sbjct: 397 DVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQF 455
Query: 534 VATTNNDKLCIDVANYLEKQSVIGWKPPFNLH 565
+ ++K VA E Q +NLH
Sbjct: 456 IGKPFDEKTLYRVAYQYETQ--------YNLH 479
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 180/441 (40%), Gaps = 67/441 (15%)
Query: 161 PFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCL 220
P G+P K++ + + S G L + + +DAY+V RL+ AGA++LG TN+ E
Sbjct: 77 PLHGIPLLLKDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSE--- 132
Query: 221 WSETR--------NMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRM 272
W+ R + GQT NPY +S + GSS G + V+A + + +GT+ GS
Sbjct: 133 WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVC 192
Query: 273 PGFYCGVYGYKLTTGFINTKG---MGFR---SGKEARTMVSAGPIVKH---------AED 317
P GV G K T G ++ G + F +G AR++ A ++ A
Sbjct: 193 PAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATA 252
Query: 318 ILPFIKCLVIPEKL--HQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRA 375
+P +L L+ R L+ + Y P ++ + GA+ V
Sbjct: 253 TMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVEL 312
Query: 376 LDEITEVSAEKLENIKQFKKSYALWRYWMT-KEPGNFARDLVNQEGEASWWRETIKIFLG 434
++ AE+ + +FK L RY+ T + P DL+ ++ + K LG
Sbjct: 313 PNQGAWAEAERTLLLYEFKAG--LERYFNTHRAPLRSLADLI------AFNQAHSKQELG 364
Query: 435 MSDHTLPAIMKLIDMHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYT 494
+ L + D L + + ++D ++L D L A +
Sbjct: 365 LFGQEL---LVEADATAGLADPAYIRARSDA--RRLAGPEGIDAAL--------AAHQLD 411
Query: 495 TFFRPYNFAYWAIFN--------------VLGFPVVNVPVGLSKDGLPLGVQIVATTNND 540
P W I + V G+P + VP+G DGLP+G+ + T ++
Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMG-QIDGLPVGLLFMGTAWSE 470
Query: 541 KLCIDVANYLEKQSVIGWKPP 561
I++A Y +Q +PP
Sbjct: 471 PKLIEMA-YAYEQRTRARRPP 490
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 93 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 152
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ L + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 153 FVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 212
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 213 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 259
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 86 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 145
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ L + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 146 FVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 205
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 206 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 252
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 112 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 171
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ L + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 172 FVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 231
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 232 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 278
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 130 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 189
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ L + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 190 FVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 249
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 250 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 296
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 92 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 151
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 152 FVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 211
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 212 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 258
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 116 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 175
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 176 FVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 235
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 236 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 282
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 154 EIDFSQKP----FLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAIL 209
E SQ P GVP + K + KG + ++GL + + D +V+ LK GA+
Sbjct: 130 ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVP 189
Query: 210 LGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGS 269
TNVP+ + N +FGQT NP+ S++ GGSSGGE A++ + GSPLGLGTDIGGS
Sbjct: 190 FVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGS 249
Query: 270 CRMPGFYCGVYGYKLTTGFINTKGM-GFRSGKEARTMVSAGPIVKHAE 316
R P +CG+ G K T ++ G+ G G+ A +S GP+ + E
Sbjct: 250 IRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTA-VQLSLGPMARDVE 296
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 152/398 (38%), Gaps = 55/398 (13%)
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAI 252
+ DA +V RL +AGA + G +LC + G NP++ R GGSSGG +A+
Sbjct: 119 SRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAAL 178
Query: 253 VSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIV 312
V+ +G D GGS R+P +CGV G+K T G + G + RT+ GPI
Sbjct: 179 VANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTG----AFPIERTIDHLGPIT 234
Query: 313 KHAEDILPFIKCLVIPEKLHQLKLDRTH----------DLKQLKVFYVEQPGDLKVSPVS 362
+ D + + + + D D+ L++ V + VS
Sbjct: 235 RTVHDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVS--Q 292
Query: 363 GEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALWR----------------YWMTK 406
E+ A+R +L EI + E++ NI ++ +W Y M
Sbjct: 293 PEVDDAVRAAAHSLTEIG-CTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNA 350
Query: 407 E----PGNFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDWAQEQ 462
E P A + A ET+K+ H + + A+
Sbjct: 351 EGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGA--------SYGKARNL 402
Query: 463 TDKLRKKLTDVLADDGVLIFPSCPCPAT------YHYTTFFRPY--NFAYWAIFNVLGFP 514
R L VL+ P+ P A+ TF A A F+V G P
Sbjct: 403 VPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHP 462
Query: 515 VVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
++VP GL +GLP+G+ I +D + V EK
Sbjct: 463 SLSVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFEK 499
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 152/398 (38%), Gaps = 55/398 (13%)
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAI 252
+ DA +V RL +AGA + G +LC + G NP++ R GGSSGG +A+
Sbjct: 119 SRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAAL 178
Query: 253 VSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIV 312
V+ +G D GG+ R+P +CGV G+K T G + G + RT+ GPI
Sbjct: 179 VANGDVDFAIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTG----AFPIERTIDHLGPIT 234
Query: 313 KHAEDILPFIKCLVIPEKLHQLKLDRTH----------DLKQLKVFYVEQPGDLKVSPVS 362
+ D + + + + D D+ L++ V + VS
Sbjct: 235 RTVHDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVS--Q 292
Query: 363 GEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALWR----------------YWMTK 406
E+ A+R +L EI + E++ NI ++ +W Y M
Sbjct: 293 PEVDDAVRAAAHSLTEIG-CTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNA 350
Query: 407 E----PGNFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDWAQEQ 462
E P A + A ET+K+ H + + A+
Sbjct: 351 EGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGA--------SYGKARNL 402
Query: 463 TDKLRKKLTDVLADDGVLIFPSCPCPAT------YHYTTFFRPY--NFAYWAIFNVLGFP 514
R L VL+ P+ P A+ TF A A F+V G P
Sbjct: 403 VPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHP 462
Query: 515 VVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
++VP GL +GLP+G+ I +D + V EK
Sbjct: 463 SLSVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFEK 499
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 146/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GGSS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGSSSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + R L W F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA--------WE-----FSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 146/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GGSS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGSSSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + R L W F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA--------WE-----FSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 148/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GGSS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGSSAGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + Q+ EA R F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRI-----------HPIIQDFEAH--RALAWEFSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 148/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GG+S G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGASSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + Q+ EA R F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRI-----------HPIIQDFEAH--RALAWEFSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 146/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GGSS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGSSSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + R L W F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA--------WE-----FSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Query: 138 EALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAY 197
E L EA+ LD A + KP GVPF K++ GL S + DA
Sbjct: 77 EVLAEARALDASPA------TGKPLYGVPFAVKDNIDVAGLPCSAAC-PAFTYEPDRDAT 129
Query: 198 IVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACG 257
+V RL++AGAI+LG TN+ + FG ++ GGSS G + V+A
Sbjct: 130 VVARLRAAGAIVLGKTNLDQFATGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGL 189
Query: 258 SPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
LGTD GS R+P + + G K T G ++T G+
Sbjct: 190 VAFSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGV 226
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 492 HYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLE 551
HYT F N+L + VP G + GLP GV +V +D +A+ L
Sbjct: 421 HYTNFV-----------NLLDCAAIAVPAGFIETGLPFGVTLVGPAFSDDSMALIADRLH 469
Query: 552 KQSVIGW 558
++ G+
Sbjct: 470 RRLEPGY 476
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 145/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + G SS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGASSSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + R L W F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA--------WE-----FSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 145/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GGSS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGSSSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LGT GG P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + R L W F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA--------WE-----FSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 145/361 (40%), Gaps = 44/361 (12%)
Query: 195 DAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVS 254
DA +V LK AGA ++G T T + NP+N + GGSS G +A V
Sbjct: 87 DAPVVMMLKRAGATIIGKTTTTAFASRDPTATL------NPHNTGHSPGGSSSGSAAAVG 140
Query: 255 ACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKH 314
A PL LG GGS P YCG K + + T G+ S + + G
Sbjct: 141 AGMIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLFGAR 196
Query: 315 AEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVR 374
AED+ + + + + K ++ V Q V P A + ++
Sbjct: 197 AEDLARGLLAMTGRSEFSGIV-----PAKAPRIGVVRQEFAGAVEP-------AAEQGLQ 244
Query: 375 ALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG 434
A + E + ++ I + + WR + R L W F
Sbjct: 245 AAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA--------WE-----FSE 291
Query: 435 MSDHTLPAIMKLIDMHLPL-PKD-DWAQEQTDKLRKKLTDVLADDGVLIFPSCP--CPAT 490
D P + +D + L PK+ D A+ + R++L +V VL+ S P PA
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 491 YHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
+T YN ++ ++G P VNVPV L GLP+GVQ++A ND + A +L
Sbjct: 352 ALASTGDPRYNR----LWTLMGNPCVNVPV-LKVGGLPIGVQVIARFGNDAHALATAWFL 406
Query: 551 E 551
E
Sbjct: 407 E 407
>pdb|4G6U|A Chain A, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM ESCHERICHIA
COLI
Length = 292
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 115 QSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKP-FLG 164
Q ++ K E+++ + ++ +D + + EA+++DK++A D +Q+P +LG
Sbjct: 24 QDIIDKWEKISDEQSAEIDQKLKDNPLEAQVIDKEVAKGGYDXTQRPGWLG 74
>pdb|4G9Q|A Chain A, Crystal Structure Of A 4-Carboxymuconolactone
Decarboxylase
Length = 269
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 64 PVENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSL-----V 118
P++ E Q ATTV + + A + ++ R D + P L + ++ ++ V
Sbjct: 156 PLDEEAEAQRATTVGNQFGSVAPGLVQYTTDYLFR-DLWLRPDLAPRDRSLVTIAALISV 214
Query: 119 KKIEQVNSKINSVVDNRFSE 138
++EQ+ +N +DN SE
Sbjct: 215 GQVEQITFHLNKALDNGLSE 234
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 504 YWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATT 537
+W ++V G V +P S+DGL +G Q++ +T
Sbjct: 158 FWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLST 191
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 341 DLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENIK 391
DL+ K F+++ PG + ++ V GE ++K + A I E S++ EN+K
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGE---ELKKLIGAPAYI-ECSSKSQENVK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,579,678
Number of Sequences: 62578
Number of extensions: 711913
Number of successful extensions: 1756
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 63
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)