Query psy15609
Match_columns 567
No_of_seqs 294 out of 1736
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 17:04:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 4E-101 1E-105 837.7 40.2 454 68-563 2-483 (485)
2 2dc0_A Probable amidase; struc 100.0 2.3E-99 8E-104 812.5 37.7 421 72-555 1-433 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 6.2E-99 2E-103 817.2 37.0 449 69-564 2-477 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 1.6E-98 5E-103 812.0 35.1 445 72-564 1-467 (471)
5 3ppm_A Fatty-acid amide hydrol 100.0 2.3E-97 8E-102 815.9 44.5 455 62-561 60-572 (573)
6 1m22_A Peptide amidase, PAM; e 100.0 6.3E-98 2E-102 815.9 38.6 452 68-561 7-490 (503)
7 3a2q_A 6-aminohexanoate-cyclic 100.0 6.2E-97 2E-101 806.7 39.9 433 68-559 5-477 (493)
8 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 6.6E-96 2E-100 795.3 28.2 442 65-561 3-466 (476)
9 1o9p_A Malonamidase E2; malona 100.0 1.7E-93 5.9E-98 762.0 36.3 407 72-557 2-412 (414)
10 3a1k_A Amidase; AS family enzy 100.0 6.7E-93 2.3E-97 777.0 21.5 462 63-562 4-508 (521)
11 3shg_B VBHA; ampylation, adeny 52.3 16 0.00056 26.8 3.9 26 74-99 32-57 (61)
12 2lz1_A Nuclear factor erythroi 52.0 17 0.00059 28.9 4.3 36 62-99 33-68 (90)
13 1skn_P DNA-binding domain of S 23.9 1.1E+02 0.0037 24.4 4.7 32 62-93 29-60 (92)
14 2jmk_A Hypothetical protein TA 20.6 1.9E+02 0.0063 23.1 5.4 75 309-385 22-108 (111)
15 2kz5_A Transcription factor NF 20.2 95 0.0033 24.7 3.7 36 62-99 33-68 (91)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=3.9e-101 Score=837.70 Aligned_cols=454 Identities=24% Similarity=0.322 Sum_probs=383.8
Q ss_pred hhhccCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHHHhh
Q psy15609 68 ELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLD 147 (567)
Q Consensus 68 ~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~~~D 147 (567)
+|..+|+++|+++|++|++||+||+++||+|| +++|+.+|||++.++++|+++|+++|
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri----------------------~~~~~~lna~~~~~~~~Al~~A~~~d 59 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAI----------------------EETDPTIKSFLALDKENAIKKAQELD 59 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHH----------------------HHHHHHHCCEEEECHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCCCceEEEEECHHHHHHHHHHHH
Confidence 36789999999999999999999999999999 99999999999999999999999999
Q ss_pred HHH-HcCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCccccccCCCCCC
Q psy15609 148 KQI-ALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRN 226 (567)
Q Consensus 148 ~~~-~~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~~n 226 (567)
+++ ++|+ . +|||||||+|||+|+++|++||+||..++++++.+||++|++||+||||++||||||||+++++|.|
T Consensus 60 ~~~~~~g~---~-gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n 135 (485)
T 3ip4_A 60 ELQAKDQM---D-GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTET 135 (485)
T ss_dssp HHHHTTCC---C-STTTTCEEEEETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTT
T ss_pred HHHHhcCC---C-CCcCCCEEEEEcCcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCC
Confidence 998 7763 5 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCCCCCCcc
Q psy15609 227 MVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMV 306 (567)
Q Consensus 227 ~~~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~~~~~~~ 306 (567)
++||+|+||||++|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+ .++|
T Consensus 136 ~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~----~sld 211 (485)
T 3ip4_A 136 SYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFA----SSLD 211 (485)
T ss_dssp CSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSC----TTTC
T ss_pred CCCCCcCCccccCcCCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcc----cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 7999
Q ss_pred eeccccCCHhhHHHHHHHhcCCcccCcCccccc---------CCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHhh
Q psy15609 307 SAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRT---------HDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALD 377 (567)
Q Consensus 307 ~~GpmaR~v~Dl~~ll~v~ag~~p~~~~~l~~~---------~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~av~~L~ 377 (567)
++|||||+|+|+++++++|+|+++.|+.....+ .+++++||||+.+. +...++++++++++++++.|+
T Consensus 212 ~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~---~~~~~~~~v~~a~~~a~~~L~ 288 (485)
T 3ip4_A 212 QIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEY---LGEGVADDVKEAVQNAVETLK 288 (485)
T ss_dssp CEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGG---GSTTSCHHHHHHHHHHHHHHH
T ss_pred eeccccCCHHHHHHHHHHhcCCCcccccccccCccchhhhhccCccCcEEEEECCc---ccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999987666544322 14689999999764 245789999999999999999
Q ss_pred hcCCcEEEEecCccchHHHHHHHHHHHhccCcc-hhHHhh---h-cccccchHHHHHHHHh--CCCCCchHHHHH-HHH-
Q psy15609 378 EITEVSAEKLENIKQFKKSYALWRYWMTKEPGN-FARDLV---N-QEGEASWWRETIKIFL--GMSDHTLPAIMK-LID- 448 (567)
Q Consensus 378 ~~lG~~V~ev~~lp~~~~~~~~~~~~~~~e~~~-~~~~l~---~-~~~~~~~~~el~k~~~--~~s~~~~~~~~~-l~~- 448 (567)
+. |++|+++ ++|.+.+....|...+..|... +..+.. . .......+.+++.... ... +.+.. +..
T Consensus 289 ~~-G~~v~~~-~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g 362 (485)
T 3ip4_A 289 SL-GAVVEEV-SLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFG----KEVKRRIFLG 362 (485)
T ss_dssp HT-TCEEEEE-CCTTGGGHHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSC----HHHHHHHHHH
T ss_pred HC-CCEEEEe-CCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcC----HHHHHHHHhc
Confidence 95 9999999 9988776666665444332111 111100 0 0011122333332211 111 22222 111
Q ss_pred -----hCCChHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCCCCCCCccccCC----CCcchhHhhHhhCCCeEEEc
Q psy15609 449 -----MHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTFFRP----YNFAYWAIFNVLGFPVVNVP 519 (567)
Q Consensus 449 -----~~~s~~~~~~a~~~r~~l~~~~~~ll~~~dvLL~Pt~p~~Ap~~~~~~~~~----~~~~yT~l~NllGlPaisVP 519 (567)
......+|.++++.|..+++++.++|+++|+||+||+|.+||.+++....+ ....||.+||++|+|+++||
T Consensus 363 ~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 442 (485)
T 3ip4_A 363 TFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVP 442 (485)
T ss_dssp HHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEe
Confidence 223335689999999999999999999999999999999999998643222 12348999999999999999
Q ss_pred CCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCC
Q psy15609 520 VGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPPFN 563 (567)
Q Consensus 520 ~G~~~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p~p 563 (567)
+|++ +|||+||||||++|+|++||++|++||++ + +|..+.|
T Consensus 443 ~g~~-~GlPvGlqlvg~~~~d~~lL~~A~~lE~~-~-~~~~~~p 483 (485)
T 3ip4_A 443 CGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYETQ-Y-NLHDVYE 483 (485)
T ss_dssp EEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHH-S-CCTTTGG
T ss_pred CCcC-CCCCEeEEEEcCCCCHHHHHHHHHHHHHh-c-CcccCCC
Confidence 9996 99999999999999999999999999999 5 6876544
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-99 Score=812.45 Aligned_cols=421 Identities=22% Similarity=0.293 Sum_probs=368.3
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHHHhhHHHH
Q psy15609 72 QSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIA 151 (567)
Q Consensus 72 ~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~~~D~~~~ 151 (567)
+|+++|+++|++|++|++||+++||+|| +++|+ +|||++.++++|+++|+++|++++
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri----------------------~~~~~-lna~~~~~~~~Al~~A~~~d~~~~ 57 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERA----------------------KAFQD-RNALAYLDEEAARKEALALTEELR 57 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHH----------------------HHTGG-GCCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCC-CcEEEEcCHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999 99999 999999999999999999999999
Q ss_pred cCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCC-CCcHHHHHHHHHCCCeEEEEcCccccccCCCCCCCCCC
Q psy15609 152 LDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKG-TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFG 230 (567)
Q Consensus 152 ~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a-~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~~n~~~G 230 (567)
+|+ ..+|||||||+|||+|+++|++||+||..+ +++ .+||++|++||+||||++||||||||+++.++.|++||
T Consensus 58 ~g~---~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G 132 (434)
T 2dc0_A 58 RGQ---VRGPLHGLPLTVKDLFPVKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTG 132 (434)
T ss_dssp TTC---CCSTTTTCEEEEETTSCBTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTC
T ss_pred cCC---CCCCcCCeeEEEEeccccCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCC
Confidence 873 679999999999999999999999999999 555 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCCCCCCcceecc
Q psy15609 231 QTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGP 310 (567)
Q Consensus 231 ~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~Gp 310 (567)
+|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+ .++|++||
T Consensus 133 ~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~----~s~d~~Gp 208 (434)
T 2dc0_A 133 PVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLS----RSTDHAGP 208 (434)
T ss_dssp CCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSC----TTTCCEEE
T ss_pred CCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCC----CccCeeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred ccCCHhhHHHHHHHhcCCcccCcCcccccCCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCc
Q psy15609 311 IVKHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENI 390 (567)
Q Consensus 311 maR~v~Dl~~ll~v~ag~~p~~~~~l~~~~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~av~~L~~~lG~~V~ev~~l 390 (567)
|||+|+|+++++++|+|+ +.|+. +++++||||+.+++ +.+++++++++++++++.|++. |++|+++ ++
T Consensus 209 ~arsv~D~a~~l~~l~g~-~~d~~------~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~-~~ 276 (434)
T 2dc0_A 209 LTRSVRDAHFLTEILAGE-SIPLE------GVQNPVFGVPLDFL---EGRLGVEVRKAFTRLLEDLPAL-RAEVREV-SL 276 (434)
T ss_dssp EESSHHHHHHHHHHHHTS-CCCCC------CCCSCEEEECHHHH---TTCSCHHHHHHHHHHHHHTTTT-TCEEEEC-CC
T ss_pred ccCCHHHHHHHHHHHhCC-CCCcc------cccCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEEe-CC
Confidence 999999999999999997 45432 46889999987643 4578999999999999999995 9999999 88
Q ss_pred cchHHHHHHHHHHHhccCcchhHHhhhcccccchHHHHHHHHhCCCCCchHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Q psy15609 391 KQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLID--MHLPLPKDDWAQEQTDKLRK 468 (567)
Q Consensus 391 p~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~el~k~~~~~s~~~~~~~~~l~~--~~~s~~~~~~a~~~r~~l~~ 468 (567)
| +.+....+...+..|... .+ .+.++ ...+...+.+...++ ..++..+|.++++.|+++++
T Consensus 277 p-~~~~~~~~~~~~~~e~~~---~~----------~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~ 339 (434)
T 2dc0_A 277 P-LEGVYEVYTRLVRYEAAR---IH----------EKALK---EHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRL 339 (434)
T ss_dssp C-CTTHHHHHHHHHHHHHHH---HS----------HHHHH---HCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHHHH---HH----------HHHHH---hchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 8 665555554443321110 00 11111 111112233333333 67889999999999999999
Q ss_pred HHHHHhcCCcEEEecCCCCCCCCCCccccC--------CCC-cchhHhhHhhCCCeEEEcCCCCCCCCceEEEEEcCCCC
Q psy15609 469 KLTDVLADDGVLIFPSCPCPATYHYTTFFR--------PYN-FAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNN 539 (567)
Q Consensus 469 ~~~~ll~~~dvLL~Pt~p~~Ap~~~~~~~~--------~~~-~~yT~l~NllGlPaisVP~G~~~~GLPvGvQvVg~~~~ 539 (567)
++.++|+++|+||+|++|.+||++++.... ... ..||.+||++|+|+++||+|+ .+|||+||||||++|+
T Consensus 340 ~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~~~~ 418 (434)
T 2dc0_A 340 ELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGAYGE 418 (434)
T ss_dssp HHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECCTTC
T ss_pred HHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECCCCc
Confidence 999999999999999999999998764210 012 568999999999999999999 8999999999999999
Q ss_pred hHHHHHHHHHHHHhhc
Q psy15609 540 DKLCIDVANYLEKQSV 555 (567)
Q Consensus 540 D~~lLavA~~lE~~~~ 555 (567)
|+.||++|++||++ +
T Consensus 419 d~~lL~~A~~lE~~-~ 433 (434)
T 2dc0_A 419 DGKVLALGGWLEAR-L 433 (434)
T ss_dssp HHHHHHHHHHHHTT-C
T ss_pred hHHHHHHHHHHHHh-h
Confidence 99999999999998 5
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=6.2e-99 Score=817.25 Aligned_cols=449 Identities=23% Similarity=0.331 Sum_probs=380.3
Q ss_pred hhccCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHHHhhH
Q psy15609 69 LLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDK 148 (567)
Q Consensus 69 i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~~~D~ 148 (567)
+..+|+++|+++|++|++||+||+++||+|| +++|+.+|||++.++++|+++|+++|+
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri----------------------~~~~~~lna~~~~~~~~Al~~A~~~d~ 59 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRY----------------------NQTEEKVKAYITPLYGKALKQAESLKE 59 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHH----------------------HHHHHHHCCEEEECHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCCcCcEEEEeChHHHHHHHHhhch
Confidence 4568999999999999999999999999999 999999999999999999999999886
Q ss_pred HHHcCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCccccccCCCCCCCC
Q psy15609 149 QIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMV 228 (567)
Q Consensus 149 ~~~~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~~n~~ 228 (567)
+ .+|||||||+|||+|+++|++||+||..++++++.+||++|++||+||||++||||||||+++.++.|++
T Consensus 60 ~---------~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~ 130 (478)
T 3h0l_A 60 R---------ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSA 130 (478)
T ss_dssp T---------TSTTTTCEEEEETTBCCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCS
T ss_pred h---------cCCcCCceEEEEcCccCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCC
Confidence 3 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCCCCCCccee
Q psy15609 229 FGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSA 308 (567)
Q Consensus 229 ~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~ 308 (567)
||+|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+ .++|++
T Consensus 131 ~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~----~~~d~~ 206 (478)
T 3h0l_A 131 FFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFA----SSLDQI 206 (478)
T ss_dssp SCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSC----TTTCCE
T ss_pred CCCcCCCccCCCCCCcchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCc----cCCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 799999
Q ss_pred ccccCCHhhHHHHHHHhcCCcccCcCccccc---------CCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHhhhc
Q psy15609 309 GPIVKHAEDILPFIKCLVIPEKLHQLKLDRT---------HDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEI 379 (567)
Q Consensus 309 GpmaR~v~Dl~~ll~v~ag~~p~~~~~l~~~---------~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~av~~L~~~ 379 (567)
|||||+|+|+++++++|+|+++.|+.....+ .+++++||||+.+.. ...++++++++++++++.|++.
T Consensus 207 Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~---~~~~~p~v~~a~~~a~~~L~~~ 283 (478)
T 3h0l_A 207 GVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFF---EYELQPQVKEAFENFIKELEKE 283 (478)
T ss_dssp EEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCHHHHTTCCCTTCEEEEEGGGG---GSCCCHHHHHHHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHhcCCCcccccccccCccchhhhhccCCCCCEEEEECCcc---cCCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999987776544332 257899999997642 4578999999999999999995
Q ss_pred CCcEEEEecCccchHHHHHHHHHHHhccCcc-hhHHhh---h-cccccchHHHHHHHHh--CCCCCchHHHHH-HHH---
Q psy15609 380 TEVSAEKLENIKQFKKSYALWRYWMTKEPGN-FARDLV---N-QEGEASWWRETIKIFL--GMSDHTLPAIMK-LID--- 448 (567)
Q Consensus 380 lG~~V~ev~~lp~~~~~~~~~~~~~~~e~~~-~~~~l~---~-~~~~~~~~~el~k~~~--~~s~~~~~~~~~-l~~--- 448 (567)
|++|+++ ++|.+.+....|...+..|... +..+.. . .......+.+.+.... ... +.+.. +..
T Consensus 284 -G~~v~~v-~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~ 357 (478)
T 3h0l_A 284 -GFEIKEV-SLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFG----PEVKRRIMLGTF 357 (478)
T ss_dssp -TCEEEEE-CCTTGGGHHHHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSC----HHHHHHHHHHHH
T ss_pred -CCEEEEe-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcC----HHHHHHHHhhch
Confidence 9999999 9998776666665444332110 111100 0 0011122333332211 111 22222 111
Q ss_pred ---hCCChHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCCCCCCCccccCCC----CcchhHhhHhhCCCeEEEcCC
Q psy15609 449 ---MHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTFFRPY----NFAYWAIFNVLGFPVVNVPVG 521 (567)
Q Consensus 449 ---~~~s~~~~~~a~~~r~~l~~~~~~ll~~~dvLL~Pt~p~~Ap~~~~~~~~~~----~~~yT~l~NllGlPaisVP~G 521 (567)
......+|.++++.|..+++++.++|+++|+||+||+|.+||.+++....+. ...||.+||++|+|+++||+|
T Consensus 358 ~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 437 (478)
T 3h0l_A 358 ALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIA 437 (478)
T ss_dssp HTSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCC
Confidence 2233457889999999999999999999999999999999999986432221 234899999999999999999
Q ss_pred CCCCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15609 522 LSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPPFNL 564 (567)
Q Consensus 522 ~~~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p~p~ 564 (567)
+ .+|||+||||||++|+|+.||++|++||++ + +|..+.|+
T Consensus 438 ~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~-~-~~~~~~p~ 477 (478)
T 3h0l_A 438 W-KDGLPVGGQLIGKHWDETTLLQISYLWEQK-F-KHYEKIPL 477 (478)
T ss_dssp E-ETTEEEEEEEEECTTCHHHHHHHHHHHHHH-S-CGGGCCSC
T ss_pred C-CCCCCeEEEEECCCCCHHHHHHHHHHHHHh-c-CcccCCCC
Confidence 9 899999999999999999999999999999 5 79877765
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-98 Score=812.01 Aligned_cols=445 Identities=24% Similarity=0.338 Sum_probs=376.7
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHHHhhHHHH
Q psy15609 72 QSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIA 151 (567)
Q Consensus 72 ~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~~~D~~~~ 151 (567)
+++++|+++|++|++|++||+++||+|| +++|+.+|||++.+ ++|+++|+++|++
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri----------------------~~~~~~lna~~~~~-~~al~~A~~~d~~-- 55 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRV----------------------QELDPGLGAFLSLN-ERLLEEAEAVDPG-- 55 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHH----------------------HHHHHHHCCEEEEC-CTTTHHHHTSCCS--
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCCCccEEEEeC-HHHHHHHHhcCcc--
Confidence 5799999999999999999999999999 99999999999999 9999999998853
Q ss_pred cCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCccccccCCCCCCCCCCC
Q psy15609 152 LDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQ 231 (567)
Q Consensus 152 ~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~~n~~~G~ 231 (567)
.|||||||+|||+|+++|++||+||..++++++.+||++|++||+||||++||||||||+++.+|.|++||+
T Consensus 56 --------~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~ 127 (471)
T 3kfu_E 56 --------LPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFP 127 (471)
T ss_dssp --------CTTTTCEEEEETTBCCTTSCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCC
T ss_pred --------CCcCCCeEEEECCcccCCccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCC
Confidence 399999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCCCCCCcceeccc
Q psy15609 232 TNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPI 311 (567)
Q Consensus 232 t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~Gpm 311 (567)
|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+ .++|++|||
T Consensus 128 t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~----~~~d~~Gp~ 203 (471)
T 3kfu_E 128 TKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYA----SSLDQIGPM 203 (471)
T ss_dssp CCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSC----TTTCEEEEE
T ss_pred cCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcc----cccCeecce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 799999999
Q ss_pred cCCHhhHHHHHHHhcCCcccCcCccccc--------CCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCcE
Q psy15609 312 VKHAEDILPFIKCLVIPEKLHQLKLDRT--------HDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVS 383 (567)
Q Consensus 312 aR~v~Dl~~ll~v~ag~~p~~~~~l~~~--------~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~av~~L~~~lG~~ 383 (567)
||+|+|+++++++|+|+++.|+.....+ .+++++||||+.++ . ..++++++++++++++.|++. |++
T Consensus 204 arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv~~~~---~-~~~~p~v~~a~~~a~~~L~~~-G~~ 278 (471)
T 3kfu_E 204 ARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREA---L-AGNSPGVERALEEALKVFREL-GLS 278 (471)
T ss_dssp ESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEEEGGG---T-TTCCHHHHHHHHHHHHHHHTT-TCE
T ss_pred eCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhccCCCCCEEEEECCc---c-CCCCHHHHHHHHHHHHHHHHc-CCe
Confidence 9999999999999999987666543222 14789999999763 2 678999999999999999995 999
Q ss_pred EEEecCccchHHHHHHHHHHHhccCc-chhHHhhh-cccc--cchHHHHHHHHhCCCCCchHHHHH-HHH------hCCC
Q psy15609 384 AEKLENIKQFKKSYALWRYWMTKEPG-NFARDLVN-QEGE--ASWWRETIKIFLGMSDHTLPAIMK-LID------MHLP 452 (567)
Q Consensus 384 V~ev~~lp~~~~~~~~~~~~~~~e~~-~~~~~l~~-~~~~--~~~~~el~k~~~~~s~~~~~~~~~-l~~------~~~s 452 (567)
|+++ ++|.+.+..+.|...+..|.. ++..+... .+.. ...+.+.+...... ..+.+.. +.. ..++
T Consensus 279 v~~v-~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 354 (471)
T 3kfu_E 279 VREV-SWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL---FGLEVKRRVLVGTFVLSSGYY 354 (471)
T ss_dssp EEEE-CCTTGGGHHHHHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTT---SCHHHHHHHHHHHHHHSTTTT
T ss_pred eeee-cCccHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhhh---cCHHHHHHHHhcccccccccC
Confidence 9999 999877776666544443211 11111100 0000 12233333322211 1133322 111 2344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCCCCCCCcccc---CCCCcchhHhhHhhCCCeEEEcCCCCCCCCce
Q psy15609 453 LPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTFF---RPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPL 529 (567)
Q Consensus 453 ~~~~~~a~~~r~~l~~~~~~ll~~~dvLL~Pt~p~~Ap~~~~~~~---~~~~~~yT~l~NllGlPaisVP~G~~~~GLPv 529 (567)
..+|.++++.|..++++|.++|+++|+||+||+|.+||.+++... ......||.+||++|+|+++||+|+ .+|||+
T Consensus 355 ~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPv 433 (471)
T 3kfu_E 355 EAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPV 433 (471)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCe
Confidence 568999999999999999999999999999999999999876421 0112349999999999999999999 899999
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15609 530 GVQIVATTNNDKLCIDVANYLEKQSVIGWKPPFNL 564 (567)
Q Consensus 530 GvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p~p~ 564 (567)
||||||++++|+.||++|++||++ +++|..+.|.
T Consensus 434 GlQlvg~~~~D~~LL~~A~~lE~~-~g~w~~~~p~ 467 (471)
T 3kfu_E 434 GLQLLAPWGEDERLLRAALAFEEA-TARAHLKAPL 467 (471)
T ss_dssp EEEEECSTTCHHHHHHHHHHHHHH-SSCCCCCTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-hcCcccCCCc
Confidence 999999999999999999999999 7789877664
No 5
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.3e-97 Score=815.86 Aligned_cols=455 Identities=26% Similarity=0.363 Sum_probs=379.3
Q ss_pred CCcc-hhhhhccCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHH
Q psy15609 62 LPPV-ENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEAL 140 (567)
Q Consensus 62 ~p~~-~~~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al 140 (567)
.|+. .++|+.+|+++|+++|++|++|++||+++||+|| +++|+.+||+++..++ |+
T Consensus 60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri----------------------~~~~~~~na~~~~~~~-a~ 116 (573)
T 3ppm_A 60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKA----------------------WEVNKGTNCVTSYLTD-CE 116 (573)
T ss_dssp CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHH----------------------HHHHHHHCCEEEECTT-HH
T ss_pred CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCCccCEEEEECHH-HH
Confidence 3444 5789999999999999999999999999999999 9999999999998754 66
Q ss_pred HHHHHhhHHHHcCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCcccccc
Q psy15609 141 EEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCL 220 (567)
Q Consensus 141 ~~A~~~D~~~~~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~ 220 (567)
++|+++| ..+|||||||+|||+|+++|++||+||..+.+.++++||++|++||+||||++||||||||+|
T Consensus 117 ~~a~~~~----------~~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~ 186 (573)
T 3ppm_A 117 TQLSQAP----------RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMF 186 (573)
T ss_dssp HHHHHCC----------TTCTTTTCEEEEETTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSC
T ss_pred HHHHhhh----------hcCCcCCCeEEEEcccCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccc
Confidence 6666543 238999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCC
Q psy15609 221 WSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGK 300 (567)
Q Consensus 221 ~~~~~n~~~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~ 300 (567)
+++|.|++||+|+||||+.++||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+.+
T Consensus 187 ~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~ 266 (573)
T 3ppm_A 187 SYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYG 266 (573)
T ss_dssp SSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCS
T ss_pred cCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998744
Q ss_pred CCCCcceeccccCCHhhHHHHHHHhcCCcc--cCcC----ccccc--CCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHH
Q psy15609 301 EARTMVSAGPIVKHAEDILPFIKCLVIPEK--LHQL----KLDRT--HDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKC 372 (567)
Q Consensus 301 ~~~~~~~~GpmaR~v~Dl~~ll~v~ag~~p--~~~~----~l~~~--~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~a 372 (567)
....+|++|||||+++|+++++++|++.++ .|+. ++... .+++++||||+.+++ +..++|+++++++++
T Consensus 267 ~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~---~~~~~p~v~~a~~~a 343 (573)
T 3ppm_A 267 QTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN---YTMPSPAMRRALIET 343 (573)
T ss_dssp CCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS---SSCCCHHHHHHHHHH
T ss_pred cCcccccccceeCcHHHHHHHHHHHhcccccccCCCCCccccchhhcccCCCCEEEEEcccC---CCCCCHHHHHHHHHH
Confidence 334689999999999999999999998763 2322 22211 247899999998765 456799999999999
Q ss_pred HHHhhhcCCcEEEEecCccchHHHHHHHH-HHHhccCcc-hhHHhhhccccc--------------chHHHHHHHHhCCC
Q psy15609 373 VRALDEITEVSAEKLENIKQFKKSYALWR-YWMTKEPGN-FARDLVNQEGEA--------------SWWRETIKIFLGMS 436 (567)
Q Consensus 373 v~~L~~~lG~~V~ev~~lp~~~~~~~~~~-~~~~~e~~~-~~~~l~~~~~~~--------------~~~~el~k~~~~~s 436 (567)
++.|+++ ||+|+++ ++|.+.+++..++ ..+..+... +...+. ++.. ..+..++.+....
T Consensus 344 ~~~L~~~-G~~v~~~-~~p~~~~~~~~~~~~~~~~dg~~~~~~~~~--~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~- 418 (573)
T 3ppm_A 344 KQRLEAA-GHTLIPF-LPNNIPYALEVLSTGGLFSDGGRSFLQNFK--GDFVDPCLGDLILILRLPSWFKRLLSLLLKP- 418 (573)
T ss_dssp HHHHHHT-TCEEEEC-CCTTHHHHHHTHHHHHHTTBTTHHHHGGGT--TSCCCGGGTTHHHHHTSCHHHHHHHHHHHTT-
T ss_pred HHHHHHC-CCEEEEe-cCccHHHHHHHHHHHHHhhhhHHHHHHHhc--cCcccHHHHHHhhhccchHHHHHHHHHHhhh-
Confidence 9999996 9999999 9998887765443 344432211 222221 1111 1122233333211
Q ss_pred CCchHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHhc--CCcEEEecCCCCCCCCCCccccCCCCcchhHhhHhhC
Q psy15609 437 DHTLPAIMKLID--MHLPLPKDDWAQEQTDKLRKKLTDVLA--DDGVLIFPSCPCPATYHYTTFFRPYNFAYWAIFNVLG 512 (567)
Q Consensus 437 ~~~~~~~~~l~~--~~~s~~~~~~a~~~r~~l~~~~~~ll~--~~dvLL~Pt~p~~Ap~~~~~~~~~~~~~yT~l~NllG 512 (567)
..+.+..+++ ...+..+|+++..++++++++|.+.|. +.|+||+|+ +.+|++|+.+......+.||.+||++|
T Consensus 419 --~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~~~YT~l~NLLD 495 (573)
T 3ppm_A 419 --LFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGAVSYTMLYNCLD 495 (573)
T ss_dssp --TCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGGGHHHHHHHHTT
T ss_pred --cchHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccccchhhhhHhhC
Confidence 1233323334 567889999999999999999999996 589999999 568999886543334578999999999
Q ss_pred CCeEEEcCCCC-----------------------------CCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCCCC
Q psy15609 513 FPVVNVPVGLS-----------------------------KDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561 (567)
Q Consensus 513 lPaisVP~G~~-----------------------------~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p 561 (567)
+|+++||+|+. .+|+||||||||++|+|++||++|+++|++ +++++.|
T Consensus 496 yPA~vVPvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~-l~~~~~~ 572 (573)
T 3ppm_A 496 FPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL-MTPQKQP 572 (573)
T ss_dssp CCEEEEEEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHH-HCTTSCC
T ss_pred CCeEEEecccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHH-HhcccCC
Confidence 99999999963 379999999999999999999999999999 8888765
No 6
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=6.3e-98 Score=815.88 Aligned_cols=452 Identities=21% Similarity=0.281 Sum_probs=374.7
Q ss_pred hhhccCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHc---CcccEEEeCChHHHHHHHH
Q psy15609 68 ELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVN---SKINSVVDNRFSEALEEAK 144 (567)
Q Consensus 68 ~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n---~~lna~v~~~~~~Al~~A~ 144 (567)
++..+|+++|+++|++|++|++||+++||+|| +++| +.+|||++.+++ |+++|+
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri----------------------~~~~~~~~~lna~~~~~~~-Al~~A~ 63 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRI----------------------AALDRTGPRLRAVIELNPD-ALKEAA 63 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHH----------------------HHHTTSTTCCCCEEEECTT-HHHHHH
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhcCCCCceEEEEECCHH-HHHHHH
Confidence 56778999999999999999999999999999 9999 999999999987 999999
Q ss_pred HhhHHHHcCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCcccccc----
Q psy15609 145 LLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCL---- 220 (567)
Q Consensus 145 ~~D~~~~~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~---- 220 (567)
++|+++++|+ ..+|||||||+|||+|+++|++||+||..++++++ +||++|++||+||||++||||||||++
T Consensus 64 ~~d~~~~~g~---~~gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~ 139 (503)
T 1m22_A 64 ERDRERRDGR---LRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGN 139 (503)
T ss_dssp HHHHHHHTTC---CCSTTTTCEEEEETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCT
T ss_pred HHHHHHHcCC---CCCCcCCceeEeecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCC
Confidence 9999988873 67999999999999999999999999999999999 999999999999999999999999998
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCC
Q psy15609 221 -WSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSG 299 (567)
Q Consensus 221 -~~~~~n~~~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~ 299 (567)
+.+++|.+||+|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+
T Consensus 140 ~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~- 218 (503)
T 1m22_A 140 DSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPIS- 218 (503)
T ss_dssp TCCTTEETTTEECCCTTSTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCcc-
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcceeccccCCHhhHHHHHHHhcCCcccCcCccccc-------------CCCCCcEEEEEcCCCCCCCCCCCHHHH
Q psy15609 300 KEARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRT-------------HDLKQLKVFYVEQPGDLKVSPVSGEMI 366 (567)
Q Consensus 300 ~~~~~~~~~GpmaR~v~Dl~~ll~v~ag~~p~~~~~l~~~-------------~~l~~lrIg~~~~~g~~~~~~vd~~v~ 366 (567)
.++|++|||||+|+|+++++++|+|+++.|+.....+ .+++++||||+.++ . .++++++
T Consensus 219 ---~sld~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~----~-~~~~~v~ 290 (503)
T 1m22_A 219 ---FSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTP----L-LKYRGMP 290 (503)
T ss_dssp ---TTTCEEEEEESSHHHHHHHHHHHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSG----G-GGSTTHH
T ss_pred ---CCCCeeCcccCCHHHHHHHHHHHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcc----c-cCCHHHH
Confidence 7899999999999999999999999987665433222 14689999999753 2 3799999
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCccchHHHHHHHHHHHhccCc-chhHHhhhcccccchHHHHHHHHhCC----CCCchH
Q psy15609 367 GAIRKCVRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPG-NFARDLVNQEGEASWWRETIKIFLGM----SDHTLP 441 (567)
Q Consensus 367 ~a~~~av~~L~~~lG~~V~ev~~lp~~~~~~~~~~~~~~~e~~-~~~~~l~~~~~~~~~~~el~k~~~~~----s~~~~~ 441 (567)
++++++++.|++. |++|+++ ++|.+.+....+...+..|.. ++..++...+.....+.+++.+.... .....+
T Consensus 291 ~a~~~a~~~L~~~-G~~v~~~-~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (503)
T 1m22_A 291 PLIEQAATELRRA-GAVVVPV-ELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQ 368 (503)
T ss_dssp HHHHHHHHHHHHT-TCEEEEE-CCTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCC
T ss_pred HHHHHHHHHHHHc-CCEEEEe-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCH
Confidence 9999999999995 9999999 988754322232223322111 23333332212223344444332111 011112
Q ss_pred HHHH-HHH-hCCChHHHHHHHHHHHHHHHH--HHHHhcC--CcEEEecCCCCCCCCCCccccCCCCcchhHhhHhhCCCe
Q psy15609 442 AIMK-LID-MHLPLPKDDWAQEQTDKLRKK--LTDVLAD--DGVLIFPSCPCPATYHYTTFFRPYNFAYWAIFNVLGFPV 515 (567)
Q Consensus 442 ~~~~-l~~-~~~s~~~~~~a~~~r~~l~~~--~~~ll~~--~dvLL~Pt~p~~Ap~~~~~~~~~~~~~yT~l~NllGlPa 515 (567)
.+.. +.. ..++..+|.++++.+++++++ +.++|++ +|+||+||+ .++++++... ......||.+||++|+|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~-~~~~~~~t~~~nl~G~Pa 446 (503)
T 1m22_A 369 ELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEG-DDFPGESYSAAAVAGYPS 446 (503)
T ss_dssp HHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC----CCTTCCHHHHHHHTCCE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCccccccc-CcccccccccchhhCCCe
Confidence 3333 222 468889999999999998776 9999975 899999999 4677665221 122357899999999999
Q ss_pred EEEcCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCCCC
Q psy15609 516 VNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561 (567)
Q Consensus 516 isVP~G~~~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p 561 (567)
++||+|++ +|||+||||||++|+|+.||++|++||++ ++.|++|
T Consensus 447 isvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A~~~E~~-~~~~~~p 490 (503)
T 1m22_A 447 LTVPMGQI-DGLPVGLLFMGTAWSEPKLIEMAYAYEQR-TRARRPP 490 (503)
T ss_dssp EEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHH-HCCCCCC
T ss_pred EEeccccC-CCCCeEEEEECCCCChHHHHHHHHHHHHh-hCCCCCC
Confidence 99999995 89999999999999999999999999999 7544554
No 7
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=6.2e-97 Score=806.68 Aligned_cols=433 Identities=27% Similarity=0.376 Sum_probs=370.4
Q ss_pred hhhccCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHHHhh
Q psy15609 68 ELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLD 147 (567)
Q Consensus 68 ~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~~~D 147 (567)
++.. |+++|+++|++|++|++||+++||+|| +++|+.+|||++.++++|+++|++ |
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri----------------------~~~~~~lna~~~~~~~~Al~~A~~-d 60 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHV----------------------QAVNPEINAVIIPLFEKARRESEL-A 60 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHH----------------------HHHHHHHCCEEEECHHHHHHHHHH-C
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCCccCeEEecCHHHHHHHhhh-c
Confidence 4566 999999999999999999999999999 999999999999999999999998 7
Q ss_pred HHHHcCCCCCCCCCcccceEEeecCc-CCCCCcCCCCccccc--CCCCCCcHHHHHHHHHCCCeEEEEcCccccccCCCC
Q psy15609 148 KQIALDEIDFSQKPFLGVPFTSKNST-ASKGLNFSIGLLKRK--DVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSET 224 (567)
Q Consensus 148 ~~~~~~~~~~~~~PL~GvPi~vKD~~-~v~G~~tt~Gs~~~~--~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~ 224 (567)
.+|||||||+|||+| +++|++||+||..++ ++++.+||++|++||+||||++||||||||+++.+|
T Consensus 61 -----------~gpL~GvPi~vKD~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~ 129 (493)
T 3a2q_A 61 -----------SGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTT 129 (493)
T ss_dssp -----------CSTTTTCEEEEESSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSC
T ss_pred -----------CCCcCCcEEEEecCCcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCC
Confidence 279999999999999 999999999999999 999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCC--C-CCCCCC
Q psy15609 225 RNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM--G-FRSGKE 301 (567)
Q Consensus 225 ~n~~~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~--~-p~~~~~ 301 (567)
.|.+||+|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|+ . |.+
T Consensus 130 ~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~--- 206 (493)
T 3a2q_A 130 EPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNV--- 206 (493)
T ss_dssp CCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHH---
T ss_pred CCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCccccccc---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 4 655
Q ss_pred CCCcceeccccCCHhhHHHHHHHhcCCcccCcCccccc---------CCCCCcEEEEEcCCCCCC-CCCCCHHHHHHHHH
Q psy15609 302 ARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRT---------HDLKQLKVFYVEQPGDLK-VSPVSGEMIGAIRK 371 (567)
Q Consensus 302 ~~~~~~~GpmaR~v~Dl~~ll~v~ag~~p~~~~~l~~~---------~~l~~lrIg~~~~~g~~~-~~~vd~~v~~a~~~ 371 (567)
.++|++|||||+|+|+++++++|+|+++.|+.....+ .+++++||||+.+++ + ..++++++++++++
T Consensus 207 -~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~--~~~~~~~~~v~~a~~~ 283 (493)
T 3a2q_A 207 -AGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNP--VGDFALDPECAAAARG 283 (493)
T ss_dssp -HTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCT--TCSSCCCHHHHHHHHH
T ss_pred -ccCceecCccCCHHHHHHHHHHHcCCCCCCcccccCCCcchhhhcccCCCCCEEEEECCcc--ccCCCCCHHHHHHHHH
Confidence 6899999999999999999999999887665543221 246899999997643 2 35789999999999
Q ss_pred HHHHhhhcCCcEEEEecCccchH--HHHHHHHHHHhccCcchhHHhhhcccccchHHHHHHHHhC---CCCCchHHHHHH
Q psy15609 372 CVRALDEITEVSAEKLENIKQFK--KSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLG---MSDHTLPAIMKL 446 (567)
Q Consensus 372 av~~L~~~lG~~V~ev~~lp~~~--~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~el~k~~~~---~s~~~~~~~~~l 446 (567)
+++.|++. |++|+++ ++|.+. .....+...+..|.. ..+ ..+..+ ++ ......+.+...
T Consensus 284 a~~~L~~~-G~~v~~~-~~~~~~~~~~~~~~~~~~~~e~~---~~~----------~~~~~~-~~~~~~~~~~~~~~~~~ 347 (493)
T 3a2q_A 284 AAAALAAL-GHDVNDA-YPEALGDRSFLKDYSTICDVAIA---REI----------ERNGEL-IGRPLTEDDVEWTSWEM 347 (493)
T ss_dssp HHHHHHHT-TCEEEEC-CCGGGGCCTHHHHHHHHHHHHHH---HHH----------HHHHHH-HTSCCCTTTSCHHHHHH
T ss_pred HHHHHHHC-CCEEEEe-CCCccCHHHHHHHHHHHHHHHHH---HHH----------HHHHHH-hcCccChhhcCHHHHHH
Confidence 99999995 9999999 877443 333444333332111 000 011111 11 111112333333
Q ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHh-cCCcEEEecCCCCCCCCCCccccC-C--------------C-CcchhHh
Q psy15609 447 ID--MHLPLPKDDWAQEQTDKLRKKLTDVL-ADDGVLIFPSCPCPATYHYTTFFR-P--------------Y-NFAYWAI 507 (567)
Q Consensus 447 ~~--~~~s~~~~~~a~~~r~~l~~~~~~ll-~~~dvLL~Pt~p~~Ap~~~~~~~~-~--------------~-~~~yT~l 507 (567)
++ ..++..+|.++++.|+++++++.++| +++|+||+||+|.+||++++.... . . ...||.+
T Consensus 348 ~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 427 (493)
T 3a2q_A 348 VKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVP 427 (493)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTH
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhccccc
Confidence 33 78899999999999999999999999 999999999999999998754311 0 0 1468999
Q ss_pred hHhhCCCeEEEcCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCC
Q psy15609 508 FNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWK 559 (567)
Q Consensus 508 ~NllGlPaisVP~G~~~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~ 559 (567)
||++|+|+++||+|++.+|||+||||||++|+|+.||++|++||++ + +|.
T Consensus 428 ~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~-~-~~~ 477 (493)
T 3a2q_A 428 FNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGA-L-PWV 477 (493)
T ss_dssp HHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHH-S-CCT
T ss_pred ccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHh-c-Ccc
Confidence 9999999999999998999999999999999999999999999999 5 674
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=6.6e-96 Score=795.33 Aligned_cols=442 Identities=22% Similarity=0.313 Sum_probs=361.7
Q ss_pred chhhhhccCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHH
Q psy15609 65 VENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAK 144 (567)
Q Consensus 65 ~~~~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~ 144 (567)
++.++..+|+++| |++|++|++||+++||+|| +++|+.+|||++.++++|+
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri----------------------~~~~~~lna~~~~~~~~al---- 53 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETI----------------------KRLDPHVKAFISVRENVSV---- 53 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHH----------------------HHHHHHHCCEEEECCCCCC----
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHH----------------------HHhCCceeEEEecChhhhh----
Confidence 3456778899999 9999999999999999999 9999999999999888877
Q ss_pred HhhHHHHcCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCccccccCCCC
Q psy15609 145 LLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSET 224 (567)
Q Consensus 145 ~~D~~~~~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~ 224 (567)
|+ . +|||||||+|||+|+++|++||+||..++++++.+||++|++||+||||++||||||||+++.++
T Consensus 54 --d~---------~-gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~ 121 (476)
T 2gi3_A 54 --EK---------K-GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSST 121 (476)
T ss_dssp --CC---------C-STTTTCEEEEETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSS
T ss_pred --hc---------c-CCcCCceEEEEcCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCC
Confidence 21 2 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCCCCCC
Q psy15609 225 RNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEART 304 (567)
Q Consensus 225 ~n~~~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~~~~~ 304 (567)
.|.+||+|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+ .+
T Consensus 122 ~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~----~s 197 (476)
T 2gi3_A 122 ERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFA----SS 197 (476)
T ss_dssp TTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSC----TT
T ss_pred CCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcc----cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred cceeccccCCHhhHHHHHHHhcCCcccCcCccccc--------CCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHh
Q psy15609 305 MVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRT--------HDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRAL 376 (567)
Q Consensus 305 ~~~~GpmaR~v~Dl~~ll~v~ag~~p~~~~~l~~~--------~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~av~~L 376 (567)
+|++|||||+|+|+++++++|+|+++.|+...+.+ .+++++||||+.+. +...++++++++++++++.|
T Consensus 198 ld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L 274 (476)
T 2gi3_A 198 LDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEI---YEHDIEEGVSERFEEALKLL 274 (476)
T ss_dssp TCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGG---GGSCCCHHHHHHHHHHHHHH
T ss_pred CCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhhhhhcCCCCCEEEEECcc---ccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999987665443222 14688999999763 23568999999999999999
Q ss_pred hhcCCcEEEEecCccchHHHHHHHHHHHhccCc-chhHHhhh-ccccc--chHHHHHHHHhCCCCCchHHHHHHHH--hC
Q psy15609 377 DEITEVSAEKLENIKQFKKSYALWRYWMTKEPG-NFARDLVN-QEGEA--SWWRETIKIFLGMSDHTLPAIMKLID--MH 450 (567)
Q Consensus 377 ~~~lG~~V~ev~~lp~~~~~~~~~~~~~~~e~~-~~~~~l~~-~~~~~--~~~~el~k~~~~~s~~~~~~~~~l~~--~~ 450 (567)
++. |++|+++ ++|.+.+....|...+..|.. .+..+... ..... ..+.+++.. ...+...+.+...+. ..
T Consensus 275 ~~~-G~~v~~~-~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~ 350 (476)
T 2gi3_A 275 ERL-GAKVERV-KIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMK--TRNVGFGEEVRRRIMIGTF 350 (476)
T ss_dssp HHT-TCEEEEE-CCTTGGGHHHHHHHHHHHHHHTC--------------------------CCSCCHHHHHHHHHHHHHH
T ss_pred HHC-CCEEEEe-CCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHh--hhhhhcCHHHHHHHHhccc
Confidence 995 9999999 988776555555443332211 11111100 00000 111111110 011111222222111 11
Q ss_pred -----CChHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCCCCCCCcc---ccCCCCcchhHhhHhhCCCeEEEcCCC
Q psy15609 451 -----LPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTT---FFRPYNFAYWAIFNVLGFPVVNVPVGL 522 (567)
Q Consensus 451 -----~s~~~~~~a~~~r~~l~~~~~~ll~~~dvLL~Pt~p~~Ap~~~~~---~~~~~~~~yT~l~NllGlPaisVP~G~ 522 (567)
+...+|.++++.|+++++++.++|+++|+||+||+|.+||++++. ........||.+||++|+|+++||+|+
T Consensus 351 ~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~ 430 (476)
T 2gi3_A 351 TLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF 430 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEeccc
Confidence 223478899999999999999999999999999999999998761 111123478999999999999999999
Q ss_pred CCCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCCCC
Q psy15609 523 SKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561 (567)
Q Consensus 523 ~~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p 561 (567)
+ +|||+||||||++|+|+.||++|++||++ + +|..+
T Consensus 431 ~-~GlPvGvqlvg~~~~d~~lL~~A~~lE~~-~-~~~~~ 466 (476)
T 2gi3_A 431 S-NNLPVGVQVIGRRFADGKVFRIARAIEKN-S-PYNEN 466 (476)
T ss_dssp E-TTEEEEEEEECCTTCHHHHHHHHHHHHHH-C-TTSBT
T ss_pred C-CCCCeEEEEEcCCCCHHHHHHHHHHHHHh-c-Ccccc
Confidence 5 89999999999999999999999999999 5 78654
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=1.7e-93 Score=762.00 Aligned_cols=407 Identities=23% Similarity=0.293 Sum_probs=348.4
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEEeCChHHHHHHHHHhhHHHH
Q psy15609 72 QSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIA 151 (567)
Q Consensus 72 ~s~~~l~~~i~~~~~t~~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v~~~~~~Al~~A~~~D~~~~ 151 (567)
+|+++|+++|++|++|++||+++||+|| +++|+.+|||++.++++| +
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri----------------------~~~~~~lna~~~~~~~~a-~---------- 48 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAI----------------------EAREKEVHAFVRHDKSAR-A---------- 48 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHH----------------------HHHHHHHCCEEEECTTCC-C----------
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHH----------------------HHhCccccEEEEeCHHHh-c----------
Confidence 5899999999999999999999999999 999999999999988776 2
Q ss_pred cCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEEEcCccccccCCCCCCCCCCC
Q psy15609 152 LDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQ 231 (567)
Q Consensus 152 ~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lgkTn~~E~~~~~~~~n~~~G~ 231 (567)
. ..+|||||||+|||+|+++|++||+||..++++++.+||++|++||+||||++||||||||++ .|. |+
T Consensus 49 -~----~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~ 117 (414)
T 1o9p_A 49 -Q----ASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TA 117 (414)
T ss_dssp -C----SSSTTTTCEEEEETTBCCSSSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CS
T ss_pred -c----cCCCcCCCEEEEEcccccCCcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CC
Confidence 1 359999999999999999999999999999999999999999999999999999999999997 444 99
Q ss_pred CCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcCCCCCCCCCCCCCCcceeccc
Q psy15609 232 TNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPI 311 (567)
Q Consensus 232 t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~Gpm 311 (567)
|+||||+.|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+ .++|++|||
T Consensus 118 t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~----~s~d~~Gp~ 193 (414)
T 1o9p_A 118 TLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYS----WALDTVGLF 193 (414)
T ss_dssp CCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSC----TTTCEEEEE
T ss_pred CCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCC----CccCeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred cCCHhhHHHHHHHhcCCcccCcCcccccCCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCcc
Q psy15609 312 VKHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENIK 391 (567)
Q Consensus 312 aR~v~Dl~~ll~v~ag~~p~~~~~l~~~~~l~~lrIg~~~~~g~~~~~~vd~~v~~a~~~av~~L~~~lG~~V~ev~~lp 391 (567)
||+++|+++++++|+|++ .. . .+.+++++||||+.+++ +..++++++++++++++.|++. |++|+++ ++|
T Consensus 194 arsv~D~a~~~~~l~g~~-~~-~---~~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~-~~~ 263 (414)
T 1o9p_A 194 GARAEDLARGLLAMTGRS-EF-S---GIVPAKAPRIGVVRQEF---AGAVEPAAEQGLQAAIKAAERA-GASVQAI-DLP 263 (414)
T ss_dssp ESSHHHHHHHHHHHHCCG-GG-S---SCCCCSSCEEEECCCGG---GCCCCHHHHHHHHHHHHHHHHT-TCEEEEC-CCC
T ss_pred cCCHHHHHHHHHHhcCCC-cc-c---cccCCCCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEEe-cCc
Confidence 999999999999999976 21 1 12257899999987653 5678999999999999999995 9999999 887
Q ss_pred chHH-HHHHHHHHHhccCc-chhHHhhhcccccchHHHHHHHHhCCCCCchHHHHHHHH--hCCChHHHHHHHHHHHHHH
Q psy15609 392 QFKK-SYALWRYWMTKEPG-NFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLID--MHLPLPKDDWAQEQTDKLR 467 (567)
Q Consensus 392 ~~~~-~~~~~~~~~~~e~~-~~~~~l~~~~~~~~~~~el~k~~~~~s~~~~~~~~~l~~--~~~s~~~~~~a~~~r~~l~ 467 (567)
...+ ....+...+..|.. .+..++ +. ..+...+.+...++ ..++..+|.++++.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~e~~~~~~~~~--------------~~---~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~ 326 (414)
T 1o9p_A 264 EAVHEAWRIHPIIQDFEAHRALAWEF--------------SE---HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGR 326 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH--------------HH---SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH--------------Hh---ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 5432 22222222222110 011111 11 11111233333333 6788999999999999999
Q ss_pred HHHHHHhcCCcEEEecCCCCCCCCCCccccCCCCcchhHhhHhhCCCeEEEcCCCCCCCCceEEEEEcCCCChHHHHHHH
Q psy15609 468 KKLTDVLADDGVLIFPSCPCPATYHYTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVA 547 (567)
Q Consensus 468 ~~~~~ll~~~dvLL~Pt~p~~Ap~~~~~~~~~~~~~yT~l~NllGlPaisVP~G~~~~GLPvGvQvVg~~~~D~~lLavA 547 (567)
+++.++|+++|+||+|++|.+||+++... .....||.+||++|+|+++||+|++. |||+||||||++|+|+.||++|
T Consensus 327 ~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a 403 (414)
T 1o9p_A 327 RELGEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATA 403 (414)
T ss_dssp HHHHHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHH
Confidence 99999999999999999999999986432 12347999999999999999999977 9999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy15609 548 NYLEKQSVIG 557 (567)
Q Consensus 548 ~~lE~~~~~g 557 (567)
++||++ ++|
T Consensus 404 ~~le~~-~~g 412 (414)
T 1o9p_A 404 WFLEDA-LAK 412 (414)
T ss_dssp HHHHHH-HHC
T ss_pred HHHHHH-hcC
Confidence 999998 654
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=6.7e-93 Score=776.97 Aligned_cols=462 Identities=22% Similarity=0.263 Sum_probs=373.4
Q ss_pred CcchhhhhccCHHHHHHHHHcCCCCH-HHHHHHHHHHhccCCCCchhhhhhhhhhhhhHHHHHcCcccEEE-eCChHHHH
Q psy15609 63 PPVENELLLQSATTVATKIKNKAISC-EEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVV-DNRFSEAL 140 (567)
Q Consensus 63 p~~~~~i~~~s~~~l~~~i~~~~~t~-~evv~a~i~ri~~~~~~~~~~~~~~~~~~~~~~~~~n~~lna~v-~~~~~~Al 140 (567)
+++..+-+.+++.++...|.++++++ +|+++++++|+ +++++.+|+++ +..++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~- 60 (521)
T 3a1k_A 4 IRPDDKAIDAAARHYGITLDKTARLEWPALIDGALGSY----------------------DVVDQLYADEATPPTTSRE- 60 (521)
T ss_dssp CCCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHTHHH----------------------HHHHHHHHHHSCCCCCCCC-
T ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH----------------------HHHHhhhcccccccCchhh-
Confidence 44556667789999999999999999 99999999999 77777776666 5566666
Q ss_pred HHHHHhhHH---------HHcCCCCCCCCCcccceEEeecCcCCCCCcCCCCcccccCCCCCCcHHHHHHHHHCCCeEEE
Q psy15609 141 EEAKLLDKQ---------IALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLG 211 (567)
Q Consensus 141 ~~A~~~D~~---------~~~~~~~~~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~a~~da~~V~~Lr~aGAI~lg 211 (567)
.++.+.|+. ...| ...+|||||||+|||||+++|++||+||..++++++.+||++|++||+||||++|
T Consensus 61 ~~~~~~~~~~~~a~~~~~~~~g---~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilG 137 (521)
T 3a1k_A 61 HAVPSASENPLSAWYVTTSIPP---TSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAG 137 (521)
T ss_dssp EECCCTTTCTTSCEEEEEEECC---SSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEE
T ss_pred hhccccccchhhhhHHHHhhcC---CCCCCCCCCEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEE
Confidence 666666551 1112 3569999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHhhcCCCCccccccCCCccccCccccCceeeeCCCCCCcC
Q psy15609 212 VTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINT 291 (567)
Q Consensus 212 kTn~~E~~~~~~~~n~~~G~t~NP~~~~r~~GGSSgGsaaavaag~~~~~lGsD~gGSIRiPA~~~Gv~G~KPT~G~vs~ 291 (567)
|||||||+|+.++.|++||+|+||||++|+||||||||||+||+|++++|+|||||||||+||+||||||||||+|+||+
T Consensus 138 KTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~ 217 (521)
T 3a1k_A 138 KAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPY 217 (521)
T ss_dssp EECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCC
T ss_pred eeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcceeccccCCHhhHHHHHHHhcCCcccCcCccc-c---------cCCCCCcEEEEEcCCCCCCCCCC
Q psy15609 292 KGMGFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLD-R---------THDLKQLKVFYVEQPGDLKVSPV 361 (567)
Q Consensus 292 ~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v~ag~~p~~~~~l~-~---------~~~l~~lrIg~~~~~g~~~~~~v 361 (567)
.|++|.+ .++|++|||||+|+|+++++++|+|+|+.|+.... . ..+++++||||+.+.. ....+
T Consensus 218 ~G~~p~~----~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~--~~~~~ 291 (521)
T 3a1k_A 218 TGAFPIE----RTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGF--GHAVS 291 (521)
T ss_dssp TTBCCSC----GGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGS--CCSSS
T ss_pred CCCCCcc----cccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECccc--cccCC
Confidence 9999988 89999999999999999999999998866654311 1 1246899999986531 13468
Q ss_pred CHHHHHHHHHHHHHhhhcCCcEEEEecCccchHHHHHHHHHHHhccCcchhHHhh-h-----c-ccccchHHHHH-HHHh
Q psy15609 362 SGEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLV-N-----Q-EGEASWWRETI-KIFL 433 (567)
Q Consensus 362 d~~v~~a~~~av~~L~~~lG~~V~ev~~lp~~~~~~~~~~~~~~~e~~~~~~~l~-~-----~-~~~~~~~~el~-k~~~ 433 (567)
+++++++++++++.|++. |++|+++ ++|.+.+....|......+ ....++. + . ......+.+.+ .+..
T Consensus 292 ~~~v~~a~~~a~~~L~~~-Ga~v~ev-~~p~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (521)
T 3a1k_A 292 QPEVDDAVRAAAHSLTEI-GCTVEEV-NIPWHLHAFHIWNVIATDG--GAYQMLDGNGYGMNAEGLYDPELMAHFASRRI 367 (521)
T ss_dssp CHHHHHHHHHHHHGGGGG-TCEEEEE-CCTHHHHHHHHHHHHHHHH--HHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEe-CCCchHhHHHHHHHHHHHH--HHhhhhhccccccchhhhhhHHHHHHHHHHhh
Confidence 999999999999999996 9999999 9887766555554332210 0000000 0 0 00011111111 1111
Q ss_pred CCCCCchHHHHH-HHH-----hCCChHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCCCCCCCCccccCC--------
Q psy15609 434 GMSDHTLPAIMK-LID-----MHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTFFRP-------- 499 (567)
Q Consensus 434 ~~s~~~~~~~~~-l~~-----~~~s~~~~~~a~~~r~~l~~~~~~ll~~~dvLL~Pt~p~~Ap~~~~~~~~~-------- 499 (567)
...+...+.+.. ++. ..++..+|.++++.|+.+++.|+++|+++|+||+||+|.+||.+++.....
T Consensus 368 ~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~ 447 (521)
T 3a1k_A 368 QHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKAL 447 (521)
T ss_dssp HSGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHH
Confidence 111112233333 221 346778999999999999999999999999999999999999997632110
Q ss_pred CCcchhHhhHhhCCCeEEEcCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC
Q psy15609 500 YNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPPF 562 (567)
Q Consensus 500 ~~~~yT~l~NllGlPaisVP~G~~~~GLPvGvQvVg~~~~D~~lLavA~~lE~~~~~gw~~p~ 562 (567)
....||.+||++|+|+++||+|+ .+|||+||||||++|+|+.||++|++||++ ..+|..|.
T Consensus 448 ~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~-~~~~~~~~ 508 (521)
T 3a1k_A 448 GMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFEKL-RGAFPTPA 508 (521)
T ss_dssp TTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHH-HCCCCCTT
T ss_pred hhhcccccchhcCCCcEEeeccc-CCCCCeeEEEEcCCCCHHHHHHHHHHHHHh-hcccCCcc
Confidence 12468999999999999999999 899999999999999999999999999994 47998754
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=52.29 E-value=16 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Q psy15609 74 ATTVATKIKNKAISCEEVVKIFIHRI 99 (567)
Q Consensus 74 ~~~l~~~i~~~~~t~~evv~a~i~ri 99 (567)
+.++.+++-+|++|..++++.|.+||
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~ 57 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERI 57 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 45678899999999999999999999
No 12
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=52.04 E-value=17 Score=28.90 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCcchhhhhccCHHHHHHHHHcCCCCHHHHHHHHHHHh
Q psy15609 62 LPPVENELLLQSATTVATKIKNKAISCEEVVKIFIHRI 99 (567)
Q Consensus 62 ~p~~~~~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri 99 (567)
+|-..++|.+++..|+.+.+....+|.+++. +|.-|
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~--lIrdi 68 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQFNEAQLA--LIRDI 68 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHH--HHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCCCHHHHH--HHHHH
Confidence 8889999999999999999999999999987 66666
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=23.94 E-value=1.1e+02 Score=24.38 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=30.0
Q ss_pred CCcchhhhhccCHHHHHHHHHcCCCCHHHHHH
Q psy15609 62 LPPVENELLLQSATTVATKIKNKAISCEEVVK 93 (567)
Q Consensus 62 ~p~~~~~i~~~s~~~l~~~i~~~~~t~~evv~ 93 (567)
+|-..++|..+++.|+-+++....+|.+++..
T Consensus 29 lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ 60 (92)
T 1skn_P 29 LPVSAFQISEMSLSELQQVLKNESLSEYQRQL 60 (92)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHH
Confidence 88889999999999999999999999999873
No 14
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=20.64 E-value=1.9e+02 Score=23.13 Aligned_cols=75 Identities=9% Similarity=0.047 Sum_probs=49.8
Q ss_pred ccccCCHhhHHHHHHHhcCCcccCcC-------cccccCCCCCcEEEEEc--CCC---CCCCCCCCHHHHHHHHHHHHHh
Q psy15609 309 GPIVKHAEDILPFIKCLVIPEKLHQL-------KLDRTHDLKQLKVFYVE--QPG---DLKVSPVSGEMIGAIRKCVRAL 376 (567)
Q Consensus 309 GpmaR~v~Dl~~ll~v~ag~~p~~~~-------~l~~~~~l~~lrIg~~~--~~g---~~~~~~vd~~v~~a~~~av~~L 376 (567)
=.|.|+.+.++.++.++-.++ .|.+ ......-+....||+.- .+- +.-+...+.-++..+++.++.+
T Consensus 22 VvmdkF~dSf~el~dv~~~~~-~Del~dFIsryARTDEImPEDKTvGFvviN~dKK~mSvsFsd~~~~~K~~i~ei~kky 100 (111)
T 2jmk_A 22 VVMDRFLESFSELYDIIDEND-TDVMMDFISRFARTDEIMPEDKTVGFVVVNADKKLMSVSFSDIDENMKKVIKATAEKF 100 (111)
T ss_dssp EEGGGHHHHHHHHHHHTTSCC-SSHHHHHHHHHCCCSCCCSSCEEEEEEEEETTTTEEEEEECSCCTTHHHHHHHHHHHG
T ss_pred EEHHHHHHHHHHHHhhhcccc-HHHHHHHHHHhhcccccCCCCceeEEEEEecCCeEEEEEeehhhhhHHHHHHHHHHHh
Confidence 358899999999999998776 4431 11111123455666441 111 1124567788999999999999
Q ss_pred hhcCCcEEE
Q psy15609 377 DEITEVSAE 385 (567)
Q Consensus 377 ~~~lG~~V~ 385 (567)
+.. |..++
T Consensus 101 kd~-GykvE 108 (111)
T 2jmk_A 101 KNK-GFKVE 108 (111)
T ss_dssp GGG-CCEEE
T ss_pred hcC-Cceee
Confidence 995 99886
No 15
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.24 E-value=95 Score=24.67 Aligned_cols=36 Identities=6% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCcchhhhhccCHHHHHHHHHcCCCCHHHHHHHHHHHh
Q psy15609 62 LPPVENELLLQSATTVATKIKNKAISCEEVVKIFIHRI 99 (567)
Q Consensus 62 ~p~~~~~i~~~s~~~l~~~i~~~~~t~~evv~a~i~ri 99 (567)
+|-..++|..++..++-+.+....+|.+++. +|.-|
T Consensus 33 lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~--lIrdi 68 (91)
T 2kz5_A 33 IPFPTDKIVNLPVDDFNELLARYPLTESQLA--LVRDI 68 (91)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHH--HHHHH
T ss_pred CCCCHHHHHHCcHHHHHHHHHHcCCCHHHHH--HHHHH
Confidence 8888999999999999999999999999987 56656
Done!