RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15609
(567 letters)
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 256 bits (655), Expect = 2e-79
Identities = 130/461 (28%), Positives = 206/461 (44%), Gaps = 64/461 (13%)
Query: 115 QSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTA 174
++ + + E N K+N+ V F EAL +AK DK+ A E P GVP + K++
Sbjct: 4 EAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEK----GPLHGVPISLKDNID 59
Query: 175 SKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNN 234
KG+ + G + DA +VERL++AGA++LG TN+ E + S T N FG T N
Sbjct: 60 VKGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPTRN 119
Query: 235 PYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
P++LSRT GGSSGG +A V+A PL +GTD GGS R+P +CG+ G K T G ++ G+
Sbjct: 120 PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGV 179
Query: 295 GFRSGKEARTMVSAGPIVKHAEDILPFIKCLV---------IPEKLHQLKLDRTHDLKQL 345
S ++ GP+ + ED + + P + LK L
Sbjct: 180 VPYS----SSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGL 235
Query: 346 KVFYVEQPGDLKVSPVSGEMIGAIRKCVRALD----EITEVSAEKLENIKQFKKSYALWR 401
++ + + P E+ A+RK AL+ E+ EV L++ L+
Sbjct: 236 RIGVPREDFYFSLDP---EVQRAVRKAAAALEALGHEVVEVEPPSLKHA------LPLYY 286
Query: 402 YWMTKEPGNFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMK--LIDMHLPLPKDD-- 457
E + DL +++ + D L +K + L
Sbjct: 287 IIAPAEASSNLSDL-------------DELYPRIRDELLGDEVKRRIELGAYALSAGYSG 333
Query: 458 ----WAQEQTDKLRKKLTDVLADDGVLIFPSCPCPA------TYHYTTFFRPYNFAYW-- 505
AQ+ LR++ + + VL+ P+ P PA T YN +
Sbjct: 334 AYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLGEAADSPTV---LYNLLDFTA 390
Query: 506 --AIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCI 544
N+ G P +++P G S+DGLP+G+QI+ +D+ +
Sbjct: 391 NTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 248 bits (636), Expect = 4e-76
Identities = 138/523 (26%), Positives = 220/523 (42%), Gaps = 74/523 (14%)
Query: 66 ENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVN 125
L +A +A ++ K +S E+V+ ++ RI E +N
Sbjct: 1 MMALTELTAAELAALLRAKELSAVELVEAYLARI----------------------EALN 38
Query: 126 SKINSVVDNRFSEAL--EEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIG 183
+N+ V AL EA D ++A E P GVP K++ + GL + G
Sbjct: 39 PDLNAFVAVDPEAALALAEAAAADARLAAGEPL---GPLAGVPIAVKDNIDTAGLPTTAG 95
Query: 184 LLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVG 243
+D DA +VERL++AGA++LG TN+ E + S T N FG T NP+NL R G
Sbjct: 96 SKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPG 155
Query: 244 GSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEAR 303
GSSGG +A V+A PL LG+D GGS R+P +CG+ G K T G ++ G+ A
Sbjct: 156 GSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGV----VPLAS 211
Query: 304 TMVSAGPIVKHAEDILPFIKCLV--------IPEKLHQLKLDRTHDLKQLKVFYVEQPGD 355
++ GP+ + D + + +P DLK L++ ++ G
Sbjct: 212 SLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPALAGKDLKGLRIGVPKELGG 271
Query: 356 LKVSPVSGEMIGAIRKCVRAL----DEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNF 411
P+ ++ A V+AL E+ EVS + YAL Y
Sbjct: 272 --GGPLDPDVRAAFEAAVKALEAAGAEVVEVS------LPLLSDDYALAAY--------- 314
Query: 412 ARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDW-----AQEQTDKL 466
L +GE R ++ P + + I + L + + Q +
Sbjct: 315 --YLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLI 372
Query: 467 RKKLTDVLADDGVLIFPSCPCPAT---YHYTTFFRPYNFAYWAIF----NVLGFPVVNVP 519
R+ + + VL+ P+ P PA + P +F N+ G P ++VP
Sbjct: 373 RRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVP 432
Query: 520 VGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPPF 562
G + DGLP+G+Q++ +D + +A LE+ +PP
Sbjct: 433 AGFTADGLPVGLQLIGPAFDDATLLRLAAALEQALGWHRRPPP 475
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 193 bits (492), Expect = 4e-55
Identities = 148/526 (28%), Positives = 221/526 (42%), Gaps = 67/526 (12%)
Query: 64 PVENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQ 123
+E AT +A + +S E+ + I RI E+
Sbjct: 4 KAADEWSFLPATELAAALAAGEVSSVELTDLAIARI----------------------ER 41
Query: 124 VNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIG 183
+ KIN++V F A A+ D A E + P LG+P T K S GL + G
Sbjct: 42 HDGKINAIVVRDFDRARAAARAADAARARGE----RGPLLGIPVTVKESFNVAGLPTTWG 97
Query: 184 LLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPE-LCLWSETRNMVFGQTNNPYNLSRTV 242
+D EDA V RLK+AGA++LG TNVP L W ++ N ++G TNNP++L+RT
Sbjct: 98 FPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDW-QSYNEIYGTTNNPWDLARTP 156
Query: 243 GGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMG---FRSG 299
GGSSGG +A ++A L +G+DIGGS R+P YCGVY +K T G + +G +
Sbjct: 157 GGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPAL 216
Query: 300 KEARTMVSAGPIVKHAEDILPFIKCLVIPEKL-----HQLKL--DRTHDLKQLKVFYVEQ 352
+ AGP+ + A D+ + + P+ L ++L L R LK +V +++
Sbjct: 217 PGQADLAVAGPMARSARDLALLLDVMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDE 276
Query: 353 PGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFA 412
L P + AI + AL + A + + R +M A
Sbjct: 277 HPLL---PTDAAVRAAIERLAAAL---ADAGARVVRHSPLLPDLAESARLYMRLLFAASA 330
Query: 413 RDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDW--AQEQTDKLRKKL 470
+ R L D +L A L DW A ++LR
Sbjct: 331 ARFPPDAYADAQARAAG---LSADDRSLAA---ERLRGAVLSHRDWLFADAAREELRAAW 384
Query: 471 TDVLADDGVLIFPSCPCPATYHYTT------------FFRPYN--FAYWAIFNVLGFPVV 516
A+ V++ P P PA H PY + + + G P
Sbjct: 385 RRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPAT 444
Query: 517 NVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPPF 562
+P+GLS GLP+GVQIV D+ + +A LE + G++PP
Sbjct: 445 AIPIGLSATGLPVGVQIVGPALEDRTPLRLAELLE-EEFGGFRPPP 489
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 159 bits (404), Expect = 7e-43
Identities = 125/528 (23%), Positives = 210/528 (39%), Gaps = 107/528 (20%)
Query: 66 ENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVN 125
EL SA +A ++++ +S E ++ + +++ VN
Sbjct: 2 MQELWRLSAAELAAAVRSRDVSAREAA----------------------EAALARLDAVN 39
Query: 126 SKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLL 185
IN+VVD+R EAL +A +D A + P GVP T K + G + G+
Sbjct: 40 PAINAVVDHRPEEALAQADAVDAARARGD---DPGPLAGVPVTVKVNVDQAGFATTNGVR 96
Query: 186 KRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGS 245
+KD+ D+ +V+ L+ AGA+++G TN P T N + G+T NP++ S T GGS
Sbjct: 97 LQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGS 156
Query: 246 SGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFI---NT----KGMGFRS 298
SGG +A V+A + GTDIGGS R P + CGV+G + T G + N + +G
Sbjct: 157 SGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIG--- 213
Query: 299 GKEARTMVSAGPIVKHAEDIL-------------PFIKCLVIPEKLHQLKLDRTHDLKQL 345
A+ M GP+ + D+ P+ +P L +
Sbjct: 214 ---AQLMSVQGPLARTVADLRLALAAMAAPDPRDPW----WVPAPLEGPPRPK------- 259
Query: 346 KVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALW-RYWM 404
+V +P L V P E+ A+R R L++ E++++ +++ L R W+
Sbjct: 260 RVALCVRPDGLDVDP---EVEAALRDAARRLEDAGWT-VEEVDDTPPLREAAELQERLWL 315
Query: 405 TKEPGNFA--RDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDWAQEQ 462
+ EG+ + G K + L + A+
Sbjct: 316 GDG---YEALLAAAEAEGDPG----ALAALRGQRA-------KARPLDLAGYMNALARRA 361
Query: 463 TDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTFFRP---------YNFAYWAIFNVLGF 513
T L ++ D +L+ P F + + A +
Sbjct: 362 T--LTRQWQLFFEDYPLLLMPVSAEL-------PFPDDLDRQGAEGFRRVWEAQLPQIAL 412
Query: 514 PVV-----NVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVI 556
P + +VP GL G+P+GVQ+VA + LC+ +E +
Sbjct: 413 PFMGLPGLSVPTGLV-GGVPVGVQLVAGRFREDLCLAAGEAIEARGGP 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 149 bits (379), Expect = 1e-39
Identities = 133/471 (28%), Positives = 212/471 (45%), Gaps = 61/471 (12%)
Query: 115 QSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTA 174
++ + +IE KIN+ ++ +AL++AK LDK I P G+P K++ +
Sbjct: 17 EASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILT--------PLAGIPIAVKDNIS 68
Query: 175 SKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNN 234
+KG+ + ++ DA ++ERLK AGA+++G TN+ E + S T FG T N
Sbjct: 69 TKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKN 128
Query: 235 PYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
P+NL R GGSSGG +A V+A +P LG+D GGS R P +CGV G+K T G ++ G+
Sbjct: 129 PWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGL 188
Query: 295 GFRSGKEARTMVSAGPIVKHAEDILPFIKCLV-------------IPEKLHQLKLDRTHD 341
A ++ GP + EDI + + PE +LK D
Sbjct: 189 ----VAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELK----KD 240
Query: 342 LKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCV-RALDEITEVSAEKLE-NIKQFKKSYAL 399
LK LKV V+ S EM +++ AL+ + E+ AE +E + K YAL
Sbjct: 241 LKGLKVGVVK--------EFSEEMDKEVQEKFENALEVLEELGAEIVEVSFPHVK--YAL 290
Query: 400 WRYWMTKEPGNFARDLVNQEG--------EASWWRETIKIFL--GMSDHTLPAIMKLIDM 449
Y++ P + +L +G E + +E G + IM L +
Sbjct: 291 PIYYIIS-PSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIM-LGNY 348
Query: 450 HLPLPKDDWAQEQTDKLR----KKLTDVLADDGVLIFPSCPCPATYHYTTFFRPYNFAYW 505
L D + K+R + + V++ P+ P P
Sbjct: 349 ALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLS 408
Query: 506 AIF----NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
I N+ G P ++VP G+ + GLP+G+QI+ +DK + V+ E+
Sbjct: 409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ 459
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 140 bits (355), Expect = 4e-36
Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 26/226 (11%)
Query: 63 PPVENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIE 122
P + ++ SA ++ I+ + +SC EV++ ++ I E
Sbjct: 3 SPPPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHI----------------------E 40
Query: 123 QVNSKINSVVDNRFSEAL-EEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFS 181
+VN +N++V R +AL EA D +A E + G+P K+ +KG+ +
Sbjct: 41 RVNPAVNAIVALRDRDALLAEAAEKDAALARGE---YRGWLHGMPQAPKDLAPTKGIRTT 97
Query: 182 IGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRT 241
+G D EDA +VER+++AGAI +G TN PE L S T N V+G T NPY+ SR+
Sbjct: 98 LGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRS 157
Query: 242 VGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTG 287
GGSSGG +A ++ P+ G+D+ GS R P + VYG++ + G
Sbjct: 158 AGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQG 203
Score = 39.6 bits (93), Expect = 0.004
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 512 GFPVVNVPVGLSKDGLPLGVQIV 534
G P ++VPVG + GLP+G+QI+
Sbjct: 429 GLPAISVPVGFNAAGLPMGMQII 451
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 136 bits (344), Expect = 1e-34
Identities = 79/217 (36%), Positives = 109/217 (50%), Gaps = 46/217 (21%)
Query: 81 IKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEAL 140
+KNK IS E+ + ++ RI E+V+ K+N+ + EAL
Sbjct: 1 LKNKEISAVELTQAYLDRI----------------------EEVDPKLNAFITVTEEEAL 38
Query: 141 EEAKLLDKQIALDEIDFSQKPFLGVPFTSKN--ST-------ASKGL-NFSIGLLKRKDV 190
+AK D ++A E P G+P K+ T ASK L N+
Sbjct: 39 AQAKAADAKLAAGEA----GPLAGIPIAIKDNICTKGIRTTCASKILENY---------- 84
Query: 191 KGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGES 250
DA +VE+LK+AGA++LG TN+ E + S T N FG T NP++L R GGSSGG +
Sbjct: 85 VPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSA 144
Query: 251 AIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTG 287
A V+A +P LG+D GGS R P +CGV G K T G
Sbjct: 145 AAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYG 181
Score = 45.1 bits (108), Expect = 6e-05
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 509 NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLE 551
N+ G P ++VP G GLP+G+Q++ +++ ++VA E
Sbjct: 417 NLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 134 bits (338), Expect = 8e-34
Identities = 129/539 (23%), Positives = 211/539 (39%), Gaps = 120/539 (22%)
Query: 72 QSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSV 131
+ AT +A ++ ++ E+V I+ K +++N +N++
Sbjct: 4 KDATAMAQAVQQGQVTPLELVTQAIY----------------------KAKKLNPTLNAI 41
Query: 132 VDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKN-STASKGLNFSIGLLKRKDV 190
V R+ EALEEAK + DFS KPF GVP K+ KG + G K+
Sbjct: 42 VSERYEEALEEAK---------QRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKNY 92
Query: 191 KGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGES 250
+ T+ V+RL+ G I+LG +N PE + + + + G N P++ SR GGSSGG +
Sbjct: 93 QATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAA 152
Query: 251 AIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGP 310
A+VS+ L +D GGS R+P + G+ G K + G I +R + A +
Sbjct: 153 ALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTK 212
Query: 311 IVKHAEDIL----------PFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSP 360
V+ +L PF + E L Q L R LK+ + ++ D SP
Sbjct: 213 SVRDTRRLLYYLQMYQMESPFPLATLSKESLFQ-SLQR-----PLKIAFYQRSPD--GSP 264
Query: 361 VSGEMIGAIRKCVRALD----EITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLV 416
VS + A+++ V L E+ E+ L+ + +SY Y M
Sbjct: 265 VSLDAAKALKQAVTFLREQGHEVVELEEFPLDMTEVM-RSY----YIMNSV--------- 310
Query: 417 NQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHL----------PLPKDDWAQ--EQTD 464
ET +F + D L M DM +P ++Q ++ D
Sbjct: 311 ----------ETAAMFDDIED-ALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWD 359
Query: 465 KLRKKLTDVLADDGVLIFPSCPCPATYH---------------YTTFFRPYNFAY-WAIF 508
+ +L+ + PA H F +F
Sbjct: 360 TYSATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMF 419
Query: 509 -------------NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQS 554
N+ G P +++P +K+GLP+GVQ++A + L + +A E
Sbjct: 420 EKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEAAG 478
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 125 bits (315), Expect = 6e-31
Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 23/207 (11%)
Query: 118 VKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKG 177
+++IE+++S + + F A EA+ +++ E + P LGVP K+ G
Sbjct: 33 LQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGE----RLPLLGVPIAIKDDVDVAG 88
Query: 178 LNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYN 237
+ G + DA +V RL++AGA+++G TNVPEL + T ++ FG T NP++
Sbjct: 89 EVTTYGSAGHGPAATS-DAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWD 147
Query: 238 LSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTK----- 292
+RT GGSSGG +A V+A +P+ LG+D GGS R+P +CG++G K I+ +
Sbjct: 148 PNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGA 207
Query: 293 --GMGFRSGKEARTMVSAGPIVKHAED 317
G+ GPI + D
Sbjct: 208 WQGLS-----------VNGPIARSVMD 223
Score = 44.5 bits (105), Expect = 1e-04
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 503 AYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLE 551
Y+ ++N+ G P VP DGLP+ VQ+V ++ + +A +E
Sbjct: 401 PYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIE 449
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 122 bits (309), Expect = 6e-30
Identities = 75/248 (30%), Positives = 109/248 (43%), Gaps = 33/248 (13%)
Query: 73 SATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVV 132
S T A +++ +SC E+V+ + R + +N+
Sbjct: 12 SLTEAAAALRSGRLSCLELVEALLARA-----------------------AALAPLNAFT 48
Query: 133 DNRFSEALEEAKLLDKQIALDEIDFSQKPFL-GVPFTSKNSTASKGLNFSIGLLKRKDVK 191
AL A+ +D Q A L GVP K++ + G+ + G
Sbjct: 49 TVDAEGALAAARRIDAQRAA-----GAALLLAGVPIVIKDNINTAGMPTTAGTPALLGFV 103
Query: 192 GTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESA 251
DA +V+RL AGA+ LG N+ EL + N FG NPY+ +R GGSSGG +A
Sbjct: 104 PATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAA 163
Query: 252 IVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPI 311
V+A +P GLGTD GGS R+P CGV G + T G + G+ S T + GPI
Sbjct: 164 AVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPIS----HTRDTVGPI 219
Query: 312 VKHAEDIL 319
+ D+
Sbjct: 220 ARSVADLA 227
Score = 38.8 bits (91), Expect = 0.007
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 464 DKLRKKLTDVLADDGV--LIFPSCPCPA-----TYHYTTFFRPY-NFAYWAIFNV----- 510
+L+ A G+ ++FP+ P A FA I N
Sbjct: 363 PRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFA-RVIRNTDPASN 421
Query: 511 LGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561
G P +++P GL+ GLP+G+++ +D+ + + LE+ V+G P
Sbjct: 422 AGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALER--VLGRLPA 470
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 116 bits (294), Expect = 4e-28
Identities = 66/176 (37%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 113 TKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNS 172
+ +L +I + N ++N+ AL EA +D A E P GVPF KN
Sbjct: 27 AQATL-ARIARANPQLNAFTAVTAERALAEAARIDAARAAGE---PLGPLAGVPFAVKNL 82
Query: 173 TASKGLNFSIG-LLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQ 231
GL G + R T DA V RL++AGA+L+G N+ E T N +G
Sbjct: 83 FDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGA 142
Query: 232 TNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTG 287
T NP++L+R GGSSGG +A V+A P LG+D GS R+P CG++G K T G
Sbjct: 143 TRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYG 198
Score = 53.0 bits (128), Expect = 2e-07
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 26/100 (26%)
Query: 479 VLIFPSCPCPATY-----------------HYTTFFRPYNFAYWAIFNVLGFPVVNVPVG 521
VLI P+ PC A + +P +F +G PVV VP+
Sbjct: 372 VLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISF--------IGLPVVAVPLR 423
Query: 522 LSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561
GLP+GVQ++A + L + A LE+Q V P
Sbjct: 424 TP-GGLPIGVQLIAAPWREDLALRAAAALEQQGVAAAPVP 462
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 116 bits (292), Expect = 7e-28
Identities = 120/498 (24%), Positives = 186/498 (37%), Gaps = 115/498 (23%)
Query: 115 QSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQI-------ALDEIDFSQKPFLGVPF 167
Q+++ +I++ + +N+ AL A+ +++ LD GVP
Sbjct: 28 QAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLD----------GVPV 77
Query: 168 TSKNSTASKGLNFSIG-LLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRN 226
+ K+ ++G G D DA V RL+ AGA+LLG T PE T +
Sbjct: 78 SIKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDS 137
Query: 227 MVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTT 286
++G T NP++ T GGSSGG +A V+ PL +GTD GGS R+P +CG +G+K T
Sbjct: 138 PLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTF 197
Query: 287 GFI---NTKGMGFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIPE---------KLHQL 334
G + G T+ GP+ + D + + P+
Sbjct: 198 GRVPLYPASPFG--------TLAHVGPMTRTVADAALLLDVIARPDARDWSALPPPTTSF 249
Query: 335 KLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDE----ITEVSAEKLENI 390
D++ L++ Y G + V P E+ + + V+ L + EV + +
Sbjct: 250 LDALDRDVRGLRIAYSPTLGYVDVDP---EVAALVAQAVQRLAALGARVEEVDPGFSDPV 306
Query: 391 KQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMH 450
+ F LW FA G A P L+D
Sbjct: 307 EAFH---VLW----------FA-------GAARL-----------LRALPPGQRALLD-- 333
Query: 451 LPLPKDDWAQEQTDKLRKKL--TDVLADDG-----------VLIFPSCPCPATYHYTTFF 497
P + + T L T V A G +L+ P+ P PA F
Sbjct: 334 -PGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPA-------F 385
Query: 498 R-----PYNFAY-----WAIF----NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLC 543
P W F N+ P +VP G + GLP+G+QIV ++D L
Sbjct: 386 EAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLV 445
Query: 544 IDVANYLEKQSVIGWKPP 561
+ VA E + W
Sbjct: 446 LRVARAYE--QALPWPHG 461
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 114 bits (286), Expect = 4e-27
Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 5/182 (2%)
Query: 113 TKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNS 172
+ +L +I Q + +N+ AL +A +D +A P GVPF KN
Sbjct: 20 AEATL-ARINQADGGLNAFTAVTAERALADAARIDADLAAGS---PLGPLAGVPFAVKNL 75
Query: 173 TASKGLNFSIGL-LKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQ 231
GL G + R DA +V+RL +AGA+L+G N+ E T N +G
Sbjct: 76 FDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGP 135
Query: 232 TNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINT 291
T NP++L+R GGSSGG +A V+A P LG+D GS R+P CGV+G K T G ++
Sbjct: 136 TRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSR 195
Query: 292 KG 293
+G
Sbjct: 196 QG 197
Score = 50.9 bits (122), Expect = 1e-06
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 26/123 (21%)
Query: 451 LPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATY-----------------HY 493
LP AQ R + ++ VLI P+ PC A +
Sbjct: 337 LPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANL 396
Query: 494 TTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQ 553
F +P +FA G PV+ P+ LP+GVQ++A + LC+ A LE+Q
Sbjct: 397 GIFTQPISFA--------GLPVLAAPLP-RPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447
Query: 554 SVI 556
V+
Sbjct: 448 GVV 450
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 111 bits (281), Expect = 2e-26
Identities = 112/436 (25%), Positives = 176/436 (40%), Gaps = 87/436 (19%)
Query: 161 PFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCL 220
P GVP T K + A++G+ +G DA RL+ AGA++L T +P+ +
Sbjct: 71 PLDGVPVTIKENIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGM 130
Query: 221 WSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVY 280
S + G T NP++L + GGSS G A +A PL LGTDIGGS R+P +CG+
Sbjct: 131 LSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIV 190
Query: 281 GYKLTTGF--INTKGMGFRSGKEARTMVSAGPIVKH-----AED--ILPFIKCLVIPEKL 331
G K + G I+ G +G RT+ A ++ A D LP P+ +
Sbjct: 191 GLKPSLGRIPIDPPYTGRCAGPMTRTVDDAALLMSVLSRPDARDGTSLP-------PQDI 243
Query: 332 HQLKLDRTHDLKQLKVFYVEQPG-DLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENI 390
LD D++ L++ + G L V P +R V A E + +E +
Sbjct: 244 DWSDLDI--DVRGLRIGLMLDAGCGLAVDP-------EVRAAVEAAARRFEAAGAIVEPV 294
Query: 391 KQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKI-FLGMSD----HTLPAIMK 445
F R ++ +G +WR + + LP I
Sbjct: 295 PPF-----------------LTRAML--DGLDRFWRARLWSDLAALPPERRAKVLPYIR- 334
Query: 446 LIDMHLPLPKDDWAQ--------------EQTDKLRKKLTDVLADDGVLIFPSCPC---P 488
WA+ QT +R + A+ ++ P P P
Sbjct: 335 -----------RWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPVPAFP 383
Query: 489 ATYHYTT--FFRPY-NFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCID 545
A + T RP+ + A+ +N+ P ++ G ++DGLP+G+QIV +D +
Sbjct: 384 AEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLR 443
Query: 546 VANYLEKQSVIGWKPP 561
+A E GW+ P
Sbjct: 444 LAKAFE-----GWRGP 454
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 108 bits (272), Expect = 3e-25
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 106 QLLRKSKTKQSLVK----KIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKP 161
QL + T LV+ +IE +N+ R AL EA D++ A + + P
Sbjct: 26 QLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD----RLP 81
Query: 162 FLGVPFTSKNSTASKGLNFSIGLLKRKDVK-GTEDAYIVERLKSAGAILLGVTNVPELCL 220
LGVP K+ G+ + G +V T D+ +V RL++AGA+++G TN EL
Sbjct: 82 LLGVPIAVKDDVDVAGVPTAFGT--AGEVPPATADSEVVRRLRAAGAVIVGKTNTCELGQ 139
Query: 221 WSETRNMVFGQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVY 280
W T FG T NP++ T GGSSGG +A V+A +G+D GS R+P + +
Sbjct: 140 WPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLV 199
Query: 281 GYKLTTGFINT 291
G K G I+T
Sbjct: 200 GIKPQRGRIST 210
Score = 59.3 bits (144), Expect = 2e-09
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 499 PYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGW 558
PY + W NVLG+P +NVP G + DGLP+G Q++ N++ L I +A LE +V GW
Sbjct: 417 PYTWP-W---NVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLE--AVSGW 470
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 99.5 bits (248), Expect = 4e-22
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 26/210 (12%)
Query: 120 KIEQVNSKINSVVD-NRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSK-NSTASKG 177
+I++ ++N+V++ N +A +A LD + ++ + P G+P K N A+
Sbjct: 35 RIDRDGPRLNAVIELN--PDAEADAAALDAERKAGKV---RGPLHGIPVLLKDNIDAADP 89
Query: 178 LNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNM--------VF 229
+ + G L + T DA++V RL+ AGA++LG N+ E W+ R+
Sbjct: 90 MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSE---WANFRSTRSSSGWSARG 146
Query: 230 GQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFI 289
G T NPY L R+ GSS G A V+A + + +GT+ GS P G+ G K T G +
Sbjct: 147 GLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLV 206
Query: 290 NTKGMGFRSG--KEARTMVSAGPIVKHAED 317
+ R G + + +AGP+ + D
Sbjct: 207 S------RDGIVPISHSQDTAGPMTRTVAD 230
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 92.7 bits (230), Expect = 8e-20
Identities = 86/364 (23%), Positives = 155/364 (42%), Gaps = 64/364 (17%)
Query: 54 IYEEQKFALPPVENELL---LQSATTVATKIKNKAI------------SCEEVVKIFIHR 98
+Y++++ L P+ N+L +++ ++ N + S EE+ I++ R
Sbjct: 39 VYDKER-VLQPIHNQLKGINIENVKIKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFR 97
Query: 99 IDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFS 158
I ++ +Q +NSV + A+EEA+ LD++ + ++
Sbjct: 98 I-------------------QEHDQNGITLNSVTEIN-PNAMEEARKLDQERSRNK---- 133
Query: 159 QKPFLGVPFTSK-NSTASKGLNFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPE 217
+ G+P K N +K + S G KD +DA IV++LK GA +LG N+ E
Sbjct: 134 KSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSE 193
Query: 218 LCLWSETRNMVF--------GQTNNPYN-LSRTVGGSSGGESAIVSACGSPLGLGTDIGG 268
W+ + GQ NPY + GSS G + +V+A +PL +GT+ G
Sbjct: 194 ---WANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETTG 250
Query: 269 SCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIP 328
S P V G + + G ++ G+ A T+ +AGP+ + +D + I
Sbjct: 251 SIVAPAAQQSVVGLRPSLGMVSRTGI----IPLAETLDTAGPMARTVKDAATLFNAM-IG 305
Query: 329 EKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLE 388
+ ++ D +++ DL + + G+ IG + V DE + AEK+
Sbjct: 306 YDEKDVMTEKVKDKERIDY-----TKDLSIDGLKGKKIG-LLFSVDQQDENRKAVAEKIR 359
Query: 389 NIKQ 392
Q
Sbjct: 360 KDLQ 363
Score = 36.8 bits (85), Expect = 0.027
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 510 VLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQS 554
V G+P + VP G +G P+G V +K ++ E+QS
Sbjct: 484 VAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNIGYAYEQQS 528
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 87.3 bits (216), Expect = 2e-18
Identities = 97/397 (24%), Positives = 159/397 (40%), Gaps = 65/397 (16%)
Query: 187 RKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSS 246
R T A V + GA +G T + E+ N +G NP R GGSS
Sbjct: 54 RTHSAATSTAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSS 113
Query: 247 GGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMV 306
G + V A LGTD GGS R+P YCG++G++ + G ++T G+ A++
Sbjct: 114 SGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGV----IPMAQSFD 169
Query: 307 SAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSP---VSG 363
+ G + IL + +++ Q ++ K ++ E L P +
Sbjct: 170 TVGWFARDPV-ILKRVGHVLLQ----QPDVNPI---KPSQIIIAEDCFQLSSIPHDRLVQ 221
Query: 364 EMIGAIRKCVRALDEITEVS-----AEKLENIKQFKKSYALWRYWMTKEP---------- 408
++ ++ K D + V+ +K+ ++K F M+KE
Sbjct: 222 VLVKSVEKLFGGGDIVKHVNLGDYVEDKVPSLKHF----------MSKEIKEQEYNIPSL 271
Query: 409 ---GNFARDLVNQE-----GEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKD--DW 458
+ R L E GE W +K G P I + I + ++ D
Sbjct: 272 AALSSAMRLLQRYEFKINHGE---WITAVKPEFG------PGISERIWEAVRTTEEKIDA 322
Query: 459 AQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTT-----FFRPYNFAYWAIFNVLGF 513
Q +LR LT +L + GVL+ P+ P P FR F+ +I V GF
Sbjct: 323 CQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGF 382
Query: 514 PVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYL 550
V++P+GL D LP+ V ++A +D +++ L
Sbjct: 383 CQVSIPLGL-HDNLPVSVSLLAKHGSDGFLLNLVESL 418
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 85.4 bits (212), Expect = 1e-17
Identities = 57/214 (26%), Positives = 82/214 (38%), Gaps = 31/214 (14%)
Query: 74 ATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVD 133
A +A I+ +S EVV+ I R E VN +N++
Sbjct: 17 AVGLAEAIRAGRVSAAEVVEAAIARA----------------------EAVNPALNALAY 54
Query: 134 NRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKGT 193
F A + A F GVP K++ GL G
Sbjct: 55 AAFDRARDRAA---------RPGSQGGFFSGVPTFIKDNVDVAGLPTMHGSDAWTPRPAK 105
Query: 194 EDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAIV 253
D+ + + G I LG T +PE + T + G NP+N + G SSGG +A+V
Sbjct: 106 ADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALV 165
Query: 254 SACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTG 287
+A P+ D GGS R+P CG+ G K + G
Sbjct: 166 AAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRG 199
Score = 39.2 bits (92), Expect = 0.005
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 505 WAIF----NVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLE 551
+ F N G P +++P+G S DGLP+G+ A ++ +++A LE
Sbjct: 409 YVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELE 459
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 83.1 bits (206), Expect = 8e-17
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAI 252
+ DA +V RL AGA ++G +LC + G +NP + + GGSS G +A+
Sbjct: 119 SFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAAL 178
Query: 253 VSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFI 289
V+A + +G D GGS R+P +CG+YG K T G +
Sbjct: 179 VAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLV 215
Score = 40.8 bits (96), Expect = 0.002
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 459 AQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHY-------TTFFRPY-NFAYWAIFNV 510
A+ +LR + L +L+ P+ P AT R A A F+V
Sbjct: 399 ARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDV 458
Query: 511 LGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
G P ++VP GL DGLP+G+ +V ++ + A E
Sbjct: 459 TGHPAMSVPCGLV-DGLPVGLMLVGRHFDEATILRAAAAFEA 499
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 82.2 bits (203), Expect = 2e-16
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 41/240 (17%)
Query: 70 LLQSATTVA---TKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNS 126
LLQ T+ T +++ ++ +E+V ++HRI +Q
Sbjct: 8 LLQKELTIHDIQTAMEDGKLTSKELVMYYLHRIAK-------------------YDQDGP 48
Query: 127 KINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSK-NSTASKGLNFSIGLL 185
KINS+++ +A+ A+ LD + + + + P G+P K N + ++ S G +
Sbjct: 49 KINSILEIN-PDAIFIAEALDHERKIKGV---RGPLHGIPVLLKDNIETNDSMHTSAGTI 104
Query: 186 KRKDVKGTEDAYIVERLKSAGAILLGVTNVPELC------LWS--ETRNMVFGQTNNPYN 237
+ +EDA++V +L+ AGA++LG N+ EL +W+ R GQT NPY
Sbjct: 105 ALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARG---GQTINPYG 161
Query: 238 ---LSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
VGGSS G + V+A + + +GT+ GS P V G K T G I+ +G+
Sbjct: 162 TGEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGI 221
Score = 30.9 bits (70), Expect = 1.8
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 512 GFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561
G+P + +P G + G P G+ + +T ++ I +A Y +Q+ K P
Sbjct: 440 GYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLA-YAFEQATKHRKIP 488
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 81.0 bits (200), Expect = 4e-16
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 9/171 (5%)
Query: 127 KINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLK 186
+N+VV R +AL+EA+ D + A E P G+P+T+K+S KGL + G
Sbjct: 45 ALNAVV-VRNPDALKEAEASDARRARGET---LGPLDGIPYTAKDSYLVKGLTAASGSPA 100
Query: 187 RKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYN---LSRTVG 243
KD+ DA+ +ERL++AGAI LG TN+P + R V+G+ +PYN L+
Sbjct: 101 FKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQRG-VYGRAESPYNAAYLTAPFA 159
Query: 244 -GSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKG 293
GSS G +A S GL + S R P G+ Y + G I+ +G
Sbjct: 160 SGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRG 210
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 74.2 bits (183), Expect = 4e-14
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTV----GGSSGG 248
DA V RL+ AGA+L+G TN+ E N +G NP+ GGSS G
Sbjct: 104 AADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSG 163
Query: 249 ESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLT 285
+ V+ + LGTD GGS R+P CG+ G+K T
Sbjct: 164 AAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPT 200
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 74.9 bits (185), Expect = 4e-14
Identities = 55/182 (30%), Positives = 76/182 (41%), Gaps = 55/182 (30%)
Query: 140 LEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKG------- 192
EA LL + AL+ D + P GVPF K+ N DV G
Sbjct: 47 RPEADLLAQAAALEARDPAALPLYGVPFAVKD-------NI--------DVAGLPTTAAC 91
Query: 193 -------TEDAYIVERLKSAGAILLGVTNV------------PELCLWSETRNMVFGQTN 233
DA +V RL++AGAI++G TN+ P +G
Sbjct: 92 PAFAYTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSP------------YGAVR 139
Query: 234 NPYNLSRTVGGSSGGESAIVSACG-SPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTK 292
N ++ GGSS G SA+ A G LGTD GS R+P + + G K T G ++T+
Sbjct: 140 NAFDPEYVSGGSSSG-SAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTR 198
Query: 293 GM 294
G+
Sbjct: 199 GV 200
Score = 33.3 bits (77), Expect = 0.34
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 29/121 (23%)
Query: 459 AQEQTDKLRKKLTDVLADDGVLIFPSCPCPATY---------------HYTTFFRPYNFA 503
A + +LR+ VLA L+ P+ P T YT NF
Sbjct: 349 ALYRLAELRRAAEAVLAGIDALLVPTAPTHPTIAEVAADPIGLNSRLGTYT------NFV 402
Query: 504 YWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQS---VIGWKP 560
N+L + VP G DGLP GV ++A D+ D+A L+ + G
Sbjct: 403 -----NLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAALALPLGGGPA 457
Query: 561 P 561
P
Sbjct: 458 P 458
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 74.3 bits (183), Expect = 5e-14
Identities = 58/173 (33%), Positives = 79/173 (45%), Gaps = 35/173 (20%)
Query: 140 LEEAKLLDKQIALDEIDF--SQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKG----- 192
L E LL + ALD D + P GVPF K+ N DV G
Sbjct: 8 LSEEDLLAQAAALDARDARPERLPLYGVPFAVKD-------NI--------DVAGLPTTA 52
Query: 193 ---------TEDAYIVERLKSAGAILLGVTNVPELCL-WSETRNMVFGQTNNPYNLSRTV 242
EDA +V L++AGAI++G TN+ + TR+ +G N ++ +
Sbjct: 53 ACPAFAYTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRS-PYGAVRNAFDPAYIS 111
Query: 243 GGSSGGESAIVSACG-SPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
GGSS G SA+ A G P LGTD GS R+P + G K T G ++T G+
Sbjct: 112 GGSSSG-SAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGV 163
Score = 42.7 bits (101), Expect = 4e-04
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 26/111 (23%)
Query: 459 AQEQTDKLRKKLTDVLADDGVLIFPSCPCPATY---------------HYTTFFRPYNFA 503
AQ + LR+K +LA VL+ P+ P T YT F
Sbjct: 312 AQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFV------ 365
Query: 504 YWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQS 554
N+L V VP G DGLP GV ++ +D + L+ S
Sbjct: 366 -----NLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAAS 411
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 74.3 bits (182), Expect = 6e-14
Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 38/223 (17%)
Query: 81 IKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEAL 140
I K +S +E+ I+++RI +K + I ++N I +
Sbjct: 174 IATKQLSYKELAGIYLNRI---------KKYDQNGLNLNAITEINPTI-----------I 213
Query: 141 EEAKLLDKQIALDEIDFSQKPFL-GVPFTSKNSTASKGLNFSIGLLKRKDVKGTEDAYIV 199
EA+ LDK+ + + K L G+P K++ +K L S G + KD +DA IV
Sbjct: 214 AEAEQLDKE------NTTNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIV 267
Query: 200 ERLKSAGAILLGVTNVPELCLWSETRNMVF--------GQTNNPYNLSRTVGGSSGGESA 251
E LK+ GA++LG TN+ E W+ + GQ+ NPY+ + GSS G +
Sbjct: 268 ENLKANGALILGKTNMSE---WAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSAT 324
Query: 252 IVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGM 294
++ + + +GT+ GS P GYK + G +N KG+
Sbjct: 325 AATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGI 367
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 72.7 bits (179), Expect = 9e-14
Identities = 41/101 (40%), Positives = 54/101 (53%)
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAI 252
T A VE+L +AGA +G T EL +N +G NP R GGSS G +A
Sbjct: 59 TRTAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAA 118
Query: 253 VSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKG 293
V+ + LGTD GGS R P +CG+YG + T G I+ +G
Sbjct: 119 VAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEG 159
Score = 42.7 bits (101), Expect = 4e-04
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 459 AQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYTTF-----FRPYNFAYWAIFNVLGF 513
A+ + ++L +L D VL+ P+ P A F +R I + G
Sbjct: 295 ARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGL 354
Query: 514 PVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
P +++P+ S DG P G+ ++ +D+ + +A +
Sbjct: 355 PQISLPLA-SVDGAPFGLSLIGPRGSDRSLLALAQTIAA 392
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 72.1 bits (177), Expect = 2e-13
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 184 LLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVG 243
+++R DA IV+RL++AGA+++G T++ E N +G+ N + +R G
Sbjct: 69 VIRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPG 128
Query: 244 GSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLT 285
GSS G + V+ S + +G+D GGS R+P G+ G+K T
Sbjct: 129 GSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPT 170
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 70.8 bits (174), Expect = 6e-13
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 13/178 (7%)
Query: 161 PFLGVPFTSKNSTASKGLNFSIG-LLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELC 219
G+P K+ G + G ++ + DA +V L AG + +G TN+ E
Sbjct: 69 LLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFA 128
Query: 220 LWSETRNMVFGQTNNPYN--LSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYC 277
N +G NP + + R GGSS G + V+A P+ +GTD GGS R+P +
Sbjct: 129 FSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFN 188
Query: 278 GVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLK 335
G+ GYK T G + G+ F A+++ S GP+ + D + I + L
Sbjct: 189 GLVGYKATRGRYSMDGV-F---PLAKSLDSLGPLCRSVRD------AVWIDAAMRGLT 236
Score = 32.7 bits (75), Expect = 0.50
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 450 HLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCP------CPATYHYTTFFRPYNFA 503
+ E ++L ++T L +L P+ P FF N
Sbjct: 338 KITASDYIALLEARERLIAQVTREL-GGALLATPTVAHVAPPLAPLEADDDLFFAT-NLK 395
Query: 504 YW---AIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVI 556
N L V++P G G+P+G+ + A D+ + A L ++VI
Sbjct: 396 TLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAA--LAVEAVI 449
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 67.8 bits (166), Expect = 4e-12
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 112 KTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKP-FLGVPFTSK 170
K K + K +E++ + N+ V F E + L + F+ K F +
Sbjct: 3 KNKGNFQKALEELKNDKNNAVSYVFDEKNNKDGPLANCV------FTIKDNFATSEGPTH 56
Query: 171 NSTASKGL-NFSIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVF 229
S SK L NF K + +A +V++L +AGA + + EL L F
Sbjct: 57 AS--SKSLENF----------KPSYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAF 104
Query: 230 GQTNNPYNLSRTVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFI 289
G NP + S+ VGGSS G +A + S +G+D G S R+P + G G+K + G I
Sbjct: 105 GLIKNPLDSSKLVGGSSSGSAATFNKNIS-FAIGSDTGDSVRLPASFIGKVGFKPSYGAI 163
Query: 290 NTKGM 294
+ G+
Sbjct: 164 SRYGL 168
>gnl|CDD|131735 TIGR02688, TIGR02688, TIGR02688 family protein. Members of this
family are uncharacterized proteins sporadically
distributed in bacteria and archaea, about 470 amino
acids in length. Several members of this family appear
in public databases with annotation as ATP-dependent
protease La, despite the lack of similarity to families
TIGR00763 (ATP-dependent protease La) or pfam02190
(ATP-dependent protease La (LON) domain). This protein
is repeatedly found downstream of another
uncharacterized protein of about 880 amino acids in
length, described by model TIGR02687 [Hypothetical
proteins, Conserved].
Length = 449
Score = 32.8 bits (75), Expect = 0.56
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 370 RKCVRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETI 429
R V A DE+ + K + + K+Y E G+F R + +AS+
Sbjct: 260 RWDVVAFDEVATLKFAKPKELIGILKNYM--------ESGSFTRGDETKSSDASF----- 306
Query: 430 KIFLGMSDHTLPAIMKLIDMHLPLP 454
+FLG T ++K D+ PLP
Sbjct: 307 -VFLGNVPLTSEHMVKNSDLFSPLP 330
>gnl|CDD|240356 PTZ00315, PTZ00315, 2'-phosphotransferase; Provisional.
Length = 582
Score = 32.2 bits (73), Expect = 0.74
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 338 RTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSY 397
R D ++ K+ Y G L + G I + +R L + EV +Y
Sbjct: 432 RDSDKQRFKLAYGAADGRLYIRANQGHSIDGVEPELRTLTSVEEVPV-------AVHGTY 484
Query: 398 ALWRYW-----------MTKEPGNFARDLVNQEGEASWWRETIKIFL 433
W W MT++ +FA+ L+N E S R +++FL
Sbjct: 485 --WSAWKAIQRCGYLSTMTRQHIHFAKGLINDEQVISGMRNNVQLFL 529
>gnl|CDD|214693 smart00488, DEXDc2, DEAD-like helicases superfamily.
Length = 289
Score = 32.0 bits (73), Expect = 0.79
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 105 PQLLRKSKT--KQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPF 162
P+ ++K K V +IE+ ++ ++ E+ EE++ + L E+ +
Sbjct: 56 PERIQKIKLIYLSRTVSEIEKRLEELRKLMQKVEYESDEESEKQAQL--LHELGREKPKV 113
Query: 163 LGVPFTSK 170
LG+ TS+
Sbjct: 114 LGLSLTSR 121
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV. Proteins scoring
above the noise cutoff for this model and below the
trusted cutoff for topoisomerase IV models probably
should be designated GyrB [DNA metabolism, DNA
replication, recombination, and repair].
Length = 654
Score = 31.6 bits (72), Expect = 1.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 99 IDCKVP-PQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIA 151
I KVP PQ + +TK L NS++ S+V++ E L E + Q A
Sbjct: 319 ISVKVPDPQF--EGQTKTKLG------NSEVRSIVESLVYEKLTEFFEENPQEA 364
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 31.1 bits (70), Expect = 2.3
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 65 VENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDC-KVPPQLLRKSKTKQSLVKKIEQ 123
++ E L+Q ++++ K+ + E+ + +C K QL ++ L K+
Sbjct: 821 LQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNG 880
Query: 124 VNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLG-VPFTSKNSTASKGLN 179
+N + + L E L + L + F G + N+ +GL
Sbjct: 881 INQIKIQFDGDALIKFLHEI-TLYANVRLANQSEGR--FHGRYADSHVNARKYQGLA 934
>gnl|CDD|164495 CHL00091, apcE, phycobillisome linker protein.
Length = 877
Score = 30.6 bits (69), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 53 FIYEEQKFALPPVENELLLQSATTVATKIKNKAISCEEVVK 93
+YEE+K L P+ENEL + + IS E V+
Sbjct: 535 EVYEEEKIWLKPLENEL------------RRRQISVREFVR 563
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 28.7 bits (65), Expect = 3.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 467 RKKLTDVLADDGVLIFPSCPCPATYHYTTF-FRPY-NFAY 504
R++L L V + P+ P + T + FR +F Y
Sbjct: 10 RRRLAAKLFPGSVAVLPAGPEKVRSNDTDYPFRQDSDFYY 49
>gnl|CDD|240141 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction.
Length = 126
Score = 28.6 bits (65), Expect = 3.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 199 VERLKSAGAILLGVTNVPEL 218
+ K GA + +TNV
Sbjct: 66 LRLAKEKGAKTVAITNVVGS 85
>gnl|CDD|149775 pfam08822, DUF1804, Protein of unknown function (DUF1804). This
family of bacterial protein is uncharacterized.
Length = 165
Score = 28.9 bits (65), Expect = 4.0
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 10 KTISSSRKKQQKRSRRQVACNLLTMFLTFVRS 41
KT+++S++ + S+ A +L FV+
Sbjct: 110 KTVAASKRVLPETSKLATALEVLQRLADFVQE 141
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 29.8 bits (67), Expect = 4.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 314 HAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKV 358
DI P L + +L++ D Q+K+ Y+EQP + K
Sbjct: 186 VGIDIDP----LAVESARKNAELNQVSDRLQVKLIYLEQPIEGKA 226
>gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the
WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a
protein implicated in Wolf-Hirschhorn syndrome (WHS).
When translocated, WHSC1 plays a role in lymphoid
multiple myeloma (MM) disease, also known as
plasmacytoma. WHCS1 proteins typically contain two
copies of the PWWP domain. The PWWP domain, named for a
conserved Pro-Trp-Trp-Pro motif, is a small domain
consisting of 100-150 amino acids. The PWWP domain is
found in numerous proteins that are involved in cell
division, growth and differentiation. Most PWWP-domain
proteins seem to be nuclear, often DNA-binding, proteins
that function as transcription factors regulating a
variety of developmental processes.
Length = 95
Score = 28.1 bits (63), Expect = 4.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 129 NSVVDNRFSEALEEAKLLDKQI 150
S + RF +ALEEA L K +
Sbjct: 74 KSYLAKRFRKALEEASLAFKGL 95
>gnl|CDD|219523 pfam07697, 7TMR-HDED, 7TM-HD extracellular. This entry represents
the extracellular domain of the 7TM-HD (7TM Receptors
with HD hydrolase).
Length = 218
Score = 29.2 bits (66), Expect = 4.6
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 102 KVPPQLLRKSKTKQSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKP 161
VPP + Q+L ++I + +I V +E E+A L K + L S +
Sbjct: 35 SVPPVYDIDPEVTQNLEEEINSLFDEIREV--KASAEKAEKADRL-KSLNLSTFQLSDEQ 91
Query: 162 FLGVPFTSKNSTAS 175
+ +
Sbjct: 92 WSTLLNADDEDLKL 105
>gnl|CDD|239750 cd03781, MATH_TRAF4, Tumor Necrosis Factor Receptor
(TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily,
TRAF domain, C-terminal MATH subdomain; composed of
proteins with similarity to human TRAF4, including the
Drosophila protein DTRAF1. TRAF molecules serve as
adapter proteins that link TNFRs and downstream kinase
cascades resulting in the activation of transcription
factors and the regulation of cell survival,
proliferation and stress responses. TRAF4 is highly
expressed during embryogenesis, especially in the
central and peripheral nervous system. Studies using
TRAF4-deficient mice show that TRAF4 is required for
neurogenesis, as well as the development of the trachea
and the axial skeleton. In addition, TRAF4 augments
nuclear factor-kappaB activation triggered by GITR
(glucocorticoid-induced TNFR), a receptor expressed in
T-cells, B-cells and macrophages. It also participates
in counteracting the signaling mediated by Toll-like
receptors through its association with TRAF6 and TRIF.
DTRAF1 plays a pivotal role in the development of eye
imaginal discs and photosensory neuron arrays in
Drosophila. TRAF4 contains a RING finger domain, seven
zinc finger domains, and a TRAF domain. The TRAF domain
can be divided into a more divergent N-terminal alpha
helical region (TRAF-N), and a highly conserved
C-terminal MATH subdomain (TRAF-C) with an
eight-stranded beta-sandwich structure. TRAF-N mediates
trimerization while TRAF-C interacts with receptors.
Length = 154
Score = 28.6 bits (64), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 270 CRMPGFYCGVYGYKL-TTGFINTKGMG 295
P FY YGYKL + F+N G G
Sbjct: 25 LFSPPFYTHRYGYKLQVSAFLNGNGSG 51
>gnl|CDD|233841 TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase, beta'' subunit.
The family consists of the product of the rpoC2 gene, a
subunit of DNA-directed RNA polymerase of cyanobacteria
and chloroplasts. RpoC2 corresponds largely to the
C-terminal region of the RpoC (the beta' subunit) of
other bacteria. Members of this family are designated
beta'' in chloroplasts/plastids, and beta' (confusingly)
in Cyanobacteria, where RpoC1 is called beta' in
chloroplasts/plastids and gamma in Cyanobacteria. We
prefer to name this family beta'', after its organellar
members, to emphasize that this RpoC1 and RpoC2 together
replace RpoC in other bacteria [Transcription,
DNA-dependent RNA polymerase].
Length = 1227
Score = 29.8 bits (67), Expect = 5.4
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 31/111 (27%)
Query: 341 DLKQLKVFYVEQPG------DLKVSPVSGEMIGAIRKCVRA------LDEITEV------ 382
LK L Y + G DLKV P +++ A K +RA EITEV
Sbjct: 34 KLKDLGFRYATRAGVSISVDDLKVPPAKQDLLEAAEKEIRATEERYRRGEITEVERFQKV 93
Query: 383 ------SAEKLEN--IKQFKKSYALWRYWM---TKEPGNFA--RDLVNQEG 420
+ E+L++ + F+++ L +M + GN + R LV G
Sbjct: 94 IDTWNGTNEELKDEVVNNFRQTDPLNSVYMMAFSGARGNMSQVRQLVGMRG 144
>gnl|CDD|198091 smart01023, BAF, Barrier to autointegration factor.
Barrier-to-autointegration factor (BAF) is an essential
protein that is highly conserved in metazoan evolution,
and which may act as a DNA-bridging protein. BAF binds
directly to double-stranded DNA, to transcription
activators, and to inner nuclear membrane proteins,
including lamin A filament proteins that anchor
nuclear-pore complexes in place, and nuclear LEM-domain
proteins that bind to laminins filaments and chromatin.
New findings suggest that BAF has structural roles in
nuclear assembly and chromatin organization, represses
gene expression and might interlink chromatin structure,
nuclear architecture and gene regulation in metazoans.
BAF can be exploited by retroviruses to act as a host
component of pre-integration complexes, which promote
the integration of the retroviral DNA into the host
chromosome by preventing autointegration of retroviral
DNA. BAF might contribute to the assembly or activity of
retroviral pre-integration complexes through direct
binding to the retroviral proteins p55 Gag and matrix,
as well as to DNA.
Length = 87
Score = 27.3 bits (61), Expect = 5.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 363 GEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYAL 399
GE +G K V AL I EV +LE K F K+Y +
Sbjct: 11 GEPMG--EKPVTALAGIGEVLGGRLET-KGFDKAYVV 44
>gnl|CDD|140237 PTZ00210, PTZ00210, UDP-GlcNAc-dependent glycosyltransferase;
Provisional.
Length = 382
Score = 29.1 bits (65), Expect = 6.7
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 14 SSRKKQQKRSRRQVACNLLTMFLTFVRSLVDWCIDF-----VFSFIYEEQKFALPPVENE 68
S K + ++RR+ + + L V SL+ C + V +F+ E Q P++ +
Sbjct: 2 SPLKMRPTQARRRPRTADIAVILLLVMSLLIICCNLHRIHVVSTFLDENQAGVSQPIDED 61
Query: 69 --LLLQSATTVA 78
L+ + A
Sbjct: 62 EYLMFVPSNVAA 73
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 28.8 bits (64), Expect = 9.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 499 PYNFAYWAIFNVLGFPVVNV-PVGLSKDGLPL-----GVQIVATTNNDKLCIDVANYLEK 552
PY F W + N+ P+G+++ G+ + G I++ TN D L I+V N+L++
Sbjct: 27 PYRFFEWHV------TYGNISPLGVAQQGILINGKFPGPDIISVTN-DNLIINVFNHLDE 79
Query: 553 QSVIGW 558
+I W
Sbjct: 80 PFLISW 85
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 28.5 bits (64), Expect = 9.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 115 QSLVKKIEQVNSKINSVVDNRFSEALEEAKLLDKQIA 151
+SL +IE++ SKI+ + ++ E K L K+IA
Sbjct: 55 ESLDNQIEEIQSKIDE-LQKEIDQSKAEIKKLQKEIA 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,724,662
Number of extensions: 2818364
Number of successful extensions: 2756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2701
Number of HSP's successfully gapped: 79
Length of query: 567
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 465
Effective length of database: 6,413,494
Effective search space: 2982274710
Effective search space used: 2982274710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)