RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15609
(567 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 206 bits (525), Expect = 1e-60
Identities = 117/512 (22%), Positives = 203/512 (39%), Gaps = 64/512 (12%)
Query: 68 ELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSK 127
+ +S + T IK+K I +VVK I E+ +
Sbjct: 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAI----------------------EETDPT 39
Query: 128 INSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKR 187
I S + A+++A+ LD+ A D++D G+P K++ + GL +
Sbjct: 40 IKSFLALDKENAIKKAQELDELQAKDQMD---GKLFGIPMGIKDNIITNGLETTCASKML 96
Query: 188 KDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSG 247
+ ++ ++E+L A+L+G N+ E + T F +T NP++ GGSSG
Sbjct: 97 EGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSG 156
Query: 248 GESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVS 307
G +A V+A PL LG+D GGS R P YCGV G K T G ++ G+ A ++
Sbjct: 157 GSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGL----VAFASSLDQ 212
Query: 308 AGPIVKHAEDILPFIK---------CLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKV 358
GP+ ++ +D ++ P + D+K LKV ++ V
Sbjct: 213 IGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGV 272
Query: 359 SPVSGEMIGAIRKCVRALD----EITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARD 414
+ ++ A++ V L + EVS + Y + + N +R
Sbjct: 273 AD---DVKEAVQNAVETLKSLGAVVEEVSLPNTKFG--IPSYYVIASSEASS---NLSRF 324
Query: 415 LVNQEGEASWWRETIKIFLGMS-----DHTLPAIMKLIDMHLPLPKDDWAQEQTDKLRKK 469
+ G S +++ MS + + L L D +++ K+R
Sbjct: 325 DGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTL 384
Query: 470 LTD----VLADDGVLIFPSCPCPATYHYTTFFRPY----NFAYWAIFNVLGFPVVNVPVG 521
+ + V + V++ P+ P A P N N+ G P ++VP G
Sbjct: 385 IKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCG 444
Query: 522 LSKDGLPLGVQIVATTNNDKLCIDVANYLEKQ 553
S +G P+G+Q + ++K VA E Q
Sbjct: 445 QS-NGRPIGLQFIGKPFDEKTLYRVAYQYETQ 475
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 188 bits (477), Expect = 6e-54
Identities = 105/513 (20%), Positives = 196/513 (38%), Gaps = 70/513 (13%)
Query: 73 SATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVV 132
T+ +K E++ ++ + I ++++ + + +
Sbjct: 7 RKLTIEECLKLSEEEREKLPQLSLETI----------------------KRLDPHVKAFI 44
Query: 133 DNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKG 192
R + ++E+ F G+P K++ + G+ + ++ +
Sbjct: 45 SVRENVSVEKKG----------------KFWGIPVAIKDNILTLGMRTTCASRILENYES 88
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAI 252
DA +V+++K AG +++G N+ E + S T F T NP++L R GGSSGG +A
Sbjct: 89 VFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAA 148
Query: 253 VSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIV 312
VSA LG+D GGS R P CGV GYK T G ++ G+ A ++ GPI
Sbjct: 149 VSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGL----VAFASSLDQIGPIT 204
Query: 313 KHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQ-----LKVFYVEQPGDLKVSPVSGEMIG 367
K D ++ + ++ ++R D + P ++ + +
Sbjct: 205 KTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSE 264
Query: 368 AIRKCVRALD----EITEVSAEKLENIKQFKKSYALWRYWMTKEPG-NFARDLVNQEGEA 422
+ ++ L+ ++ V I K S A + E N AR + G
Sbjct: 265 RFEEALKLLERLGAKVERVK------IPHIKYSVATYYVIAPAEASSNLARFDGVKYGLR 318
Query: 423 SWWRETIKIFL-----GMSDHTLPAIM---KLIDMHLPLPKDDWAQEQTDKLRKKLTDVL 474
+ ++++ G + IM + + A + K+ +L +VL
Sbjct: 319 IKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL 378
Query: 475 ADDGVLIFPSCPCPATYH---YTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGV 531
+ ++ P+ P A + N+ G P ++VP G S + LP+GV
Sbjct: 379 SQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGV 437
Query: 532 QIVATTNNDKLCIDVANYLEKQSVIGWKPPFNL 564
Q++ D +A +EK S F L
Sbjct: 438 QVIGRRFADGKVFRIARAIEKNSPYNENGMFPL 470
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 164 bits (415), Expect = 3e-45
Identities = 91/522 (17%), Positives = 187/522 (35%), Gaps = 66/522 (12%)
Query: 68 ELLLQSATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSK 127
+ ++ + + + ++ RI +++ +
Sbjct: 3 PYAETDVADLQARMTAGELDSTTLTQAYLQRI-------------------AALDRTGPR 43
Query: 128 INSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKR 187
+ +V++ +AL+EA D++ + P G+P K++ + + S G L
Sbjct: 44 LRAVIE-LNPDALKEAAERDRERRDGRLR---GPLHGIPLLLKDNINAAPMATSAGSLAL 99
Query: 188 KDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNM-----VFGQTNNPYNLSRTV 242
+ + +DAY+V RL+ AGA++LG TN+ E + ++ GQT NPY +S +
Sbjct: 100 QGFR-PDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP 158
Query: 243 GGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEA 302
GSS G + V+A + + +GT+ GS P GV G K T G ++ G+ S
Sbjct: 159 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPIS---- 214
Query: 303 RTMVSAGPIVKHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVS 362
+ +AGP+ + D + + + + L +
Sbjct: 215 FSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGR------AVYDYTARLDPQGLR 268
Query: 363 GEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEA 422
G+ IG ++ + + + + +++ R L+ E +A
Sbjct: 269 GKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKA 328
Query: 423 SWWR---------------------ETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDWAQE 461
R + + L + P +
Sbjct: 329 GLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDA 388
Query: 462 QTDKLRKKLTDVLADDGV--LIFPSCPCPATYHYTTFFRPYNFAYWAIFNVLGFPVVNVP 519
+ + + LA + L+ P+ + ++ V G+P + VP
Sbjct: 389 RRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEG--DDFPGESYSAAAVAGYPSLTVP 446
Query: 520 VGLSKDGLPLGVQIVATTNNDKLCIDVANYLEKQSVIGWKPP 561
+G DGLP+G+ + T ++ I++A E+++ +PP
Sbjct: 447 MGQI-DGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR-ARRPP 486
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 161 bits (408), Expect = 6e-44
Identities = 117/540 (21%), Positives = 198/540 (36%), Gaps = 84/540 (15%)
Query: 62 LPPVENELLLQ-SATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKK 120
P +++E LL + K+++ +S E V ++ +
Sbjct: 30 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKA--------------------- 68
Query: 121 IEQVNSKINSVVDNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNF 180
+VN N V + ++ + GVP + K + KG +
Sbjct: 69 -WEVNKGTNCVTSYLTDCETQLSQAPRQ-----------GLLYGVPVSLKECFSYKGHDS 116
Query: 181 SIGLLKRKDVKGTEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSR 240
++GL + + D +V+ LK GA+ TNVP+ L + N +FGQT NP+ S+
Sbjct: 117 TLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSK 176
Query: 241 TVGGSSGGESAIVSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGK 300
+ GGSSGGE A++ + GSPLGLGTDIGGS R P +CG+ G K T ++ G+
Sbjct: 177 SPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYG 236
Query: 301 EARTMVSAGPIVKHAEDILPFIKCLVIPE---------KLHQLKLDRTHDLKQLKVFYVE 351
+ +S GP+ + E + +K L+ L + +Y
Sbjct: 237 QTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYET 296
Query: 352 QPGDLKVSPVSGEMIGAIRKCVRALDEITEVS----AEKLENIKQFKKSYALWRYWMTKE 407
+ + +I ++ A + LE + R ++
Sbjct: 297 DNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNF 356
Query: 408 PGNF----ARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKDDWAQEQT 463
G+F DL+ SW++ + + L L A + + K Q +
Sbjct: 357 KGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPR-SAEKLWKLQHEI 415
Query: 464 DKLRKKLTDVLADDG--VLIFPSCPCPATYHYTTFFRPYNFAYWAIFNVLGFPVVNVPVG 521
+ R+ + VL+ P PA T +Y ++N L FP VPV
Sbjct: 416 EMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATGAISYTVLYNCLDFPAGVVPVT 474
Query: 522 L-----------------------------SKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
+ GLP+ VQ VA ++LC+ +E+
Sbjct: 475 TVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQ 534
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 120 bits (301), Expect = 3e-30
Identities = 85/480 (17%), Positives = 146/480 (30%), Gaps = 74/480 (15%)
Query: 73 SATTVATKIKNKAISCEEVVKIFIHRIDCKVPPQLLRKSKTKQSLVKKIEQVNSKINSVV 132
S + +I+ +S + I E ++++ V
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAI----------------------EAREKEVHAFV 40
Query: 133 DNRFSEALEEAKLLDKQIALDEIDFSQKPFLGVPFTSKNSTASKGLNFSIGLLKRKDVKG 192
+ A+ P G+ K+ + + +G + +
Sbjct: 41 -----RHDKSARAQAS-----------GPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQP 84
Query: 193 TEDAYIVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVGGSSGGESAI 252
DA +V LK AG + + + T NP+N + GGSS G +A
Sbjct: 85 RSDAPVVMMLKRAG------ATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAA 138
Query: 253 VSACGSPLGLGTDIGGSCRMPGFYCGVYGYKLTTGFINTKGMGFRSGKEARTMVSAGPIV 312
V A PL LGT GGS P YCG K + + T G+ S +
Sbjct: 139 VGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFG---- 194
Query: 313 KHAEDILPFIKCLVIPEKLHQLKLDRTHDLKQLKVFYVEQPGDLKVSPVSGEMIGAIRKC 372
AED+ + + + K + V ++
Sbjct: 195 ARAEDLARGLLAMTGR--------SEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAA 246
Query: 373 VRALDEITEVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIF 432
++A + + + A + E +
Sbjct: 247 IKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLR----- 301
Query: 433 LGMSDHTLPAIMKLIDMHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYH 492
+ L + D A+ + R++L +V VL+ S P A
Sbjct: 302 ----------ASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 493 YTTFFRPYNFAYWAIFNVLGFPVVNVPVGLSKDGLPLGVQIVATTNNDKLCIDVANYLEK 552
+ Y ++ ++G P VNVPV GLP+GVQ++A ND + A +LE
Sbjct: 352 A--LASTGDPRYNRLWTLMGNPCVNVPVL-KVGGLPIGVQVIARFGNDAHALATAWFLED 408
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 28.1 bits (62), Expect = 1.2
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 13/82 (15%)
Query: 435 MSDHTLPAIMKLIDMHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSCPCPATYHYT 494
M+ H + + +L W +E ++ R + A++ + P
Sbjct: 1 MTQH-----LTIAQTYL----AAWNEEDNERRRHLVGQAWAENTRYVDPLMQGEGQQGIA 51
Query: 495 TFFRPYNFAYWAIFNVLGFPVV 516
A F F +
Sbjct: 52 AMIE----AARQKFPGYRFVLA 69
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 28.4 bits (63), Expect = 2.3
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 358 VSPVSGEMIGAIRKCVRALDEIT----------EVSAEKLENIKQFKKSYALWRYW---- 403
V SG+M ++ LDE ++ + N+K K +W
Sbjct: 121 VRIDSGDMAYISKRVREQLDEAGFTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLI 180
Query: 404 --MTKEPGNFARDLVNQEGEASWWRETIKI 431
+ LV+ EGE ++TIK+
Sbjct: 181 TAYDQPALGAVFKLVSIEGEDGQMKDTIKL 210
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
synthase (DAHP synthase, AroG) {Baker's yeast
(Saccharomyces cerevisiae), tyrosine-regulated isozyme
[TaxId: 4932]}
Length = 346
Score = 27.9 bits (62), Expect = 3.4
Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 43/202 (21%)
Query: 96 IHRIDCKVPPQLLRK----SKTKQSLVKKIEQVNSKINSVVDNRF------------SEA 139
I D P LL+ + T K+ + I + D+R A
Sbjct: 3 ILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAA 62
Query: 140 LEEAKLLDKQIALDEIDFSQKPFLGVP--FTSKNSTASKGLNFSIGLLKRKDVKGTEDAY 197
E A L K + + + K T G GL+ DV T +
Sbjct: 63 QEYALRLKKLSDE-----LKGDLSIIMRAYLEKPRTTV-GWK---GLINDPDVNNTFN-- 111
Query: 198 IVERLKSAGAILLGVTNVPELCLWSETRNMVFGQTNNPYNLSRTVG-GSSGG---ESAI- 252
I + L+SA + + +T + L + T +P L+ V G+ G ES +
Sbjct: 112 INKGLQSARQLFVNLT---NIGLPIGSE---MLDTISPQYLADLVSFGAIGARTTESQLH 165
Query: 253 ---VSACGSPLGLGTDIGGSCR 271
S P+G G+
Sbjct: 166 RELASGLSFPVGFKNGTDGTLN 187
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 28.0 bits (61), Expect = 3.4
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 1/85 (1%)
Query: 400 WRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLGMSDHTLPAIMKLIDMHLPLPKD-DW 458
+ PG A + + + L + + + D
Sbjct: 181 FSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLILVAAVQFDDPSVTTQLDS 240
Query: 459 AQEQTDKLRKKLTDVLADDGVLIFP 483
+ RKK A G LI
Sbjct: 241 DSKSVAVERKKAFADAAKGGYLIAA 265
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 167
Score = 27.2 bits (60), Expect = 3.9
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 409 GNFARDLVNQEGEASWWRETIKIFLGMSDHT--LPAIMK--LIDMHLPLPKDDWAQ--EQ 462
G L+ + + +G SD + L A + L +H P+
Sbjct: 86 GYGCGQLLPGLDWGRLQAASPRPLIGFSDISVLLSAFHRHGLPAIHGPVATGLGLSPLSA 145
Query: 463 TDKLRKKLTDVLADDGVL 480
+ +++L + + +L
Sbjct: 146 PREQQERLASLASVSRLL 163
>d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.1 bits (60), Expect = 6.3
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 1 MPVKKRDSPKTISSSRKKQQKRSRRQ--VACNLLTMF-LTFVRSLVDWCIDFVFSFIYEE 57
+PV D P+ S ++ R + + T +T V + +E
Sbjct: 196 LPVPDNDPPEKYKSQSPISERTKDRVSYIHNDSCTRIDITKVENHNQNSKSRQSETTHE- 254
Query: 58 QKFALPPVENELLLQSATTVATKIKNKAISCEEVVKIFIHRIDC 101
VE E+ + I N + +++ F++
Sbjct: 255 -------VELEINTPALLNAFDNITNDSKEYASLIRTFLNNGTI 291
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 27.2 bits (59), Expect = 6.5
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 15/105 (14%)
Query: 381 EVSAEKLENIKQFKKSYALWRYWMTKEPGNFARDLVNQEGEASWWRETIKIFLGMSDHTL 440
+ S +E K+ K + G A E ++ D +
Sbjct: 175 DKSPRAIETAKENAKLNGVEDRMKF------------IVGSAFEEMEKLQKKGEKFDIVV 222
Query: 441 PAIMKLIDMHLPLPKDDWAQEQTDKLRKKLTDVLADDGVLIFPSC 485
+ + +++ D G+L+ SC
Sbjct: 223 LDPPAFV---QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 27.0 bits (60), Expect = 8.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 415 LVNQEGEASWWRETI-KIFLGMSDHTLPAIMKLIDMHL 451
L QE EA WR + F ++ +PA + + L
Sbjct: 498 LQVQEREAVRWRNSCVLYFQSVAGRPIPANYEQPEHDL 535
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.1 bits (55), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 363 GEMIGAIRKCVRALDEITEVSAEKLENIKQFKKSYALWRYWMT 405
E +G K V +L I EV +KLE + F K+Y + ++
Sbjct: 12 AEPMG--EKPVGSLAGIGEVLGKKLEE-RGFDKAYVVLGQFLV 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,115,373
Number of extensions: 100482
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 14
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)