BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1561
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 19/197 (9%)
Query: 84 VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
+I IN+L F V + DWHP NH+SF N + Q ++T+ D
Sbjct: 56 IIPTINQLAGC--FENVVLTQDWHPDNHISFAANHPGK-------------QPFETIELD 100
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
+ Q LWP+HC+Q + AE H DL + + + KG +DSYS F + T
Sbjct: 101 YGS---QVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTG 157
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD-DMERTRNT 262
L L+ + + VYV G+A D CV +A+DA+ G++T++IED C+G+D++ +E+ T
Sbjct: 158 LTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQT 217
Query: 263 ILENYGSCVQSDEVLGQ 279
+ + +QS ++L +
Sbjct: 218 MQQQGVVRIQSTDLLNE 234
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 20/198 (10%)
Query: 84 VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
+I IN+L F V + DWHP NH+SF N + Q ++T+ D
Sbjct: 33 IIPTINQLAGC--FENVVLTQDWHPDNHISFAANHPGK-------------QPFETIELD 77
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
+ Q LWP+HC+Q + AE H DL + + + KG +DSYS F + T
Sbjct: 78 YGS---QVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTG 134
Query: 204 LAKQLEAKKVTDVYVCGLAYDVC-VGASAIDAITIGYRTILIEDCCRGVDMD-DMERTRN 261
L L+ + + VYV G+A D C V +A+DA+ G++T++IED C+G+D++ +E+
Sbjct: 135 LTGYLKERGIDTVYVVGIATDFCXVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQ 194
Query: 262 TILENYGSCVQSDEVLGQ 279
T+ + +QS ++L +
Sbjct: 195 TMQQQGVVRIQSTDLLNE 212
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 42/206 (20%)
Query: 54 EETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVS 113
EE V D+ +D + ++ I V E I K + + + DWHP NH+S
Sbjct: 3 EEALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGAL--IVATRDWHPENHIS 60
Query: 114 FIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVV 173
F + R WPRHCVQ++ GAE DL
Sbjct: 61 FRE--------------------------------RGGPWPRHCVQNTPGAEFVVDLP-- 86
Query: 174 DNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAID 233
++A+ + K T+P+ ++YS F +GT LAK L V VY+CG+A + CV A+A+D
Sbjct: 87 EDAVIISKATEPDKEAYSGF------EGTDLAKILRGNGVKRVYICGVATEYCVRATALD 140
Query: 234 AITIGYRTILIEDCCRGVDMDDMERT 259
A+ G+ L+ D +G+ +D ER
Sbjct: 141 ALKHGFEVYLLRDAVKGIKPEDEERA 166
>pdb|2H0R|A Chain A, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|B Chain B, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|C Chain C, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|D Chain D, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|E Chain E, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|F Chain F, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|G Chain G, Structure Of The Yeast Nicotinamidase Pnc1p
Length = 216
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 84 VIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVV 141
+I PI+ L+ + ++ + + DWHPS H+SF N K + +P TY +
Sbjct: 28 LINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKNHKDK--------EPYSTYTYHSPR 79
Query: 142 FDGDTPIRQRLWPRHCVQDSWGAELHKDL--KVVDNAIKVY-KGTDPEVDSYSVFWDNKK 198
D+ LWP HCV+++WG++L + +VV IK+ KG + + YS F D
Sbjct: 80 PGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWN 139
Query: 199 LKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDME 257
T + K LE +VY+ G+A + CV A+AI A +GY+T ++ D R + DD E
Sbjct: 140 FHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGYKTTVLLDYTRPIS-DDPE 197
>pdb|3V8E|A Chain A, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|B Chain B, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|C Chain C, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|D Chain D, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|E Chain E, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|F Chain F, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|G Chain G, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
Length = 216
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 84 VIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVV 141
+I PI+ L+ + ++ + + DWHPS H+SF N K + +P TY +
Sbjct: 28 LINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKNHKDK--------EPYSTYTYHSPR 79
Query: 142 FDGDTPIRQRLWPRHCVQDSWGAELHKDL--KVVDNAIKVY-KGTDPEVDSYSVFWDNKK 198
D+ LWP HCV+++WG++L + +VV IK+ KG + + YS F D
Sbjct: 80 PGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWN 139
Query: 199 LKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDME 257
T + K LE +VY+ G+A + V A+AI A +GY+T ++ D R + DD E
Sbjct: 140 FHKTDMNKYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDYTRPIS-DDPE 197
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|B Chain B, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|C Chain C, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|D Chain D, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
Length = 227
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 82 KVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVV 141
+ +++ IN + + F + DWHP NH SF+ +
Sbjct: 59 EALLDGINAVSSQLPFRYQVATQDWHPENHCSFVTH------------------------ 94
Query: 142 FDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKG 201
P WP HCVQ S GA+LH L + KG + DSYS F ++ +
Sbjct: 95 ---GGP-----WPPHCVQGSAGAQLHAGLHTQRINAVIRKGVTQQADSYSAFVEDNGVS- 145
Query: 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRN 261
T LA L + V+VCG+AYD CV +A+DA G+ +L+ED VD D R
Sbjct: 146 TGLAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLTAAVD-DAAWSART 204
Query: 262 TILENYG 268
L++ G
Sbjct: 205 AELKDAG 211
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 142 FDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKG 201
F G TP WP HCV + GA+ H L YKG +YS F + G
Sbjct: 58 FSG-TPDYSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGA--YTGAYSGF-EGVDENG 113
Query: 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDD----ME 257
T L L + V +V V G+A D CV +A DA+ G T ++ D GV D +E
Sbjct: 114 TPLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALE 173
Query: 258 RTRNTILE 265
R +E
Sbjct: 174 EMRTASVE 181
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 150 QRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKK----LKGTSLA 205
+L+P H + + G L+ DL + G+D V FW +K+ GT L
Sbjct: 85 SKLFPPHNLIGTSGRNLYGDLGIFYQE----HGSDSRV-----FWMDKRHYSAFSGTDLD 135
Query: 206 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY 239
+L ++V+ V + G+ D+CV +AIDA +GY
Sbjct: 136 IRLRERRVSTVILTGVLTDICVLHTAIDAYNLGY 169
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 151 RLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKK----LKGTSLAK 206
+L+P H ++ + G +L+ L Y+ + + VFW +K+ GT L
Sbjct: 100 KLFPPHNIKGTSGRDLYGALA------DFYQKHE---NDKRVFWMDKRHYSAFSGTDLDI 150
Query: 207 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILEN 266
+L ++V V + G+ D+CV +AIDA +GY+ +++ + ++ + N +
Sbjct: 151 RLRERRVDTVVLTGVLTDICVLHTAIDAYNLGYQIEVVQSAVASLSQENHQFALNHLQNV 210
Query: 267 YGSCV 271
G+ +
Sbjct: 211 LGATI 215
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 151 RLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEA 210
R+W RH + G+E+ +++ + K +YS F+ GT+L L A
Sbjct: 60 RIWGRHSXKGDDGSEVIDEIRPSAGDYVLEK------HAYSGFY------GTNLDXILRA 107
Query: 211 KKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRG-VDMDDMERTRNTILENYGS 269
+ V + GL D+CV +A DA+ YR I++ED +D + ++ YG+
Sbjct: 108 NGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAARIDPN----WKDYFTRVYGA 163
Query: 270 CVQ-SDEVLG 278
V+ SDE+ G
Sbjct: 164 TVKRSDEIEG 173
>pdb|3O94|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 150 QRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKK----LKGTSLA 205
+L+P H + + G L+ DL + G+D V FW +K+ GT L
Sbjct: 85 SKLFPPHNLIGTSGRNLYGDLGIFYQE----HGSDSRV-----FWMDKRHYSAFSGTDLD 135
Query: 206 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY 239
+L ++V+ V + G+ D+ V +AIDA +GY
Sbjct: 136 IRLRERRVSTVILTGVLTDISVLHTAIDAYNLGY 169
>pdb|3O91|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 150 QRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKK----LKGTSLA 205
+L+P H + + G L+ DL + G+D V FW +K+ GT L
Sbjct: 85 SKLFPPHNLIGTSGRNLYGDLGIFYQE----HGSDSRV-----FWMDKRHYSAFSGTDLD 135
Query: 206 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY 239
+L ++V+ V + G+ D+ V +AIDA +GY
Sbjct: 136 IRLRERRVSTVILTGVLTDIXVLHTAIDAYNLGY 169
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|B Chain B, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|C Chain C, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|D Chain D, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|E Chain E, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|F Chain F, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|G Chain G, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|H Chain H, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3UAO|A Chain A, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|B Chain B, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|C Chain C, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|D Chain D, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|E Chain E, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|F Chain F, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|G Chain G, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|H Chain H, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
Length = 236
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 201 GTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
GT LA L + V + V G V AS +DA++ G+R +++ DC + E
Sbjct: 147 GTMLAAWLAQRGVQTLLVAGATTSGXVRASVVDAMSAGFRPLVLSDCVGDRALGPHEANL 206
Query: 261 NTILENYGSCVQSDEVLGQ 279
+ + Y + + DE L +
Sbjct: 207 FDMRQKYAAVMTHDEALAK 225
>pdb|1J2R|A Chain A, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|B Chain B, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|C Chain C, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|D Chain D, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
Length = 199
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%)
Query: 201 GTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
GT L QL + + + +CG++ ++ V ++A +A +G+ ++ ED C + +
Sbjct: 120 GTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSI 179
Query: 261 NTILENYGSCVQSDEVL 277
N I +E+L
Sbjct: 180 NHIYPRIARVRSVEEIL 196
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 151 RLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKG---TSLAKQ 207
R+ P H V+ +WG++ +L P+ D Y V ++ G T L
Sbjct: 70 RVRPLHAVKGTWGSDFIPELY-------------PQEDEYIV--QKRRHSGFAHTDLDLY 114
Query: 208 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIED 246
L+ + + V + G+ +VCV ++A DA+ Y+ I + D
Sbjct: 115 LKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSD 153
>pdb|3TXY|A Chain A, Structure Of An Isochorismatase Family Protein
(Bth_ii2229) From Burkholderia Thailandensis
Length = 199
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 12/140 (8%)
Query: 149 RQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKL--------- 199
R R P V S+ + LKV + DPE +++ + L
Sbjct: 50 RARKLPVIFVHTSYQPDGAVALKVKTDVPPSPPNLDPEWSAFAPALGVQPLDVVVTKHQW 109
Query: 200 ---KGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDM 256
GT L QL + +TD+ + G+A ++ V ++A +A Y +++ D D
Sbjct: 110 GAFTGTDLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVSTWSTDAQ 169
Query: 257 ERTRNTILENYGSCVQSDEV 276
I G + +V
Sbjct: 170 TFALTQIFPKLGQVATAADV 189
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDN-ELEETFAVFDLNQDGLIDREEFAFCW 77
S N+ Q A++ QA K+ L + +L E F D N DG++DR+E +
Sbjct: 298 SAMTNIRQFQAEKKLAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGY 357
Query: 78 NRWIKV 83
+ ++++
Sbjct: 358 HEFMRL 363
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
pdb|3HU5|B Chain B, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
Length = 204
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 15/129 (11%)
Query: 157 CVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDV 216
CV + GAE+ L+ + K +S F GT L + V +
Sbjct: 82 CVAGTPGAEIVAGLEPASGETVLVK------TRFSAF------XGTECDXLLRRRGVDTL 129
Query: 217 YVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCV---QS 273
V G Y C+ +A+DA + Y +++ D C E N +CV
Sbjct: 130 LVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESNINDXRAXGITCVPLTAL 189
Query: 274 DEVLGQHEN 282
D+VL + E
Sbjct: 190 DDVLARREG 198
>pdb|2KFF|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestnpftak
pdb|2KFG|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 In Complex
With Fnyestdpftak
pdb|2KFH|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestgpftak
pdb|2KSP|A Chain A, Mechanism For The Selective Interaction Of C-Terminal
Eh-Dom Proteins With Specific Npf-Containing Partners
Length = 105
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 24 LSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKV 83
LS + K G A K K L + L + + + D+++DGL+D EEFA N IKV
Sbjct: 26 LSPVNGKITGANAKKEMVKSK---LPNTVLGKIWKLADVDKDGLLDDEEFALA-NHLIKV 81
Query: 84 VIE 86
+E
Sbjct: 82 KLE 84
>pdb|2JQ6|A Chain A, Structure Of Eh-Domain Of Ehd1
Length = 139
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 24 LSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKV 83
LS + K G A K K L + L + + + D+++DGL+D EEFA N IKV
Sbjct: 60 LSPVNGKITGANAKKEMVKSK---LPNTVLGKIWKLADVDKDGLLDDEEFALA-NHLIKV 115
Query: 84 VIE 86
+E
Sbjct: 116 KLE 118
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 35 QALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWI-------KVVIEP 87
Q L G +++L +E A+ +L +G +D+EEFA W R + KV P
Sbjct: 32 QELLTGPPGDMFSL--DECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTSP 89
Query: 88 INKLLDTVNFNAVFYSLD-WHPSNHVSFIDNIKL-RKIHHTSTIQPEDA 134
V S D W + F+ I + R++ H T++ D+
Sbjct: 90 -----------GVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDS 127
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWN 78
SGT++ + L + R K + EL E F +FD N DG ID EE A +
Sbjct: 67 SGTIDFEEF------LVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAEIFR 120
Query: 79 RWIK-VVIEPINKLL 92
+ V E I L+
Sbjct: 121 ASGEHVTDEEIESLM 135
>pdb|2OYN|A Chain A, Crystal Structure Of Cdp-Bound Protein Mj0056 From
Methanococcus Jannaschii, Pfam Duf120
Length = 146
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 60 FDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNA--VFYSLDWHPSNHVSFIDN 117
FD+N+ I+ E+F F R+ V + PI L+ + V +H S + I
Sbjct: 54 FDINKFKYIETEDFEFNGKRFFGVKVLPIKILIGNKKIDGAIVVPKKTYHSSEIIEIIAP 113
Query: 118 IKLRK 122
+KLR+
Sbjct: 114 MKLRE 118
>pdb|2P3M|A Chain A, Solution Structure Of Mj0056
pdb|2VBS|A Chain A, Riboflavin Kinase Mj0056 From Methanocaldococcus
Jannaschii In Complex With Po4
pdb|2VBT|A Chain A, Riboflavin Kinase Mj0056 From Methanocaldococcus
Jannaschii In Complex With Cdp And Po4
pdb|2VBU|A Chain A, Riboflavin Kinase Mj0056 From Methanocaldococcus
Jannaschii In Complex With Cdp
pdb|2VBV|A Chain A, Riboflavin Kinase Mj0056 From Methanocaldococcus
Jannaschii In Complex With Cdp And Fmn
pdb|2VBV|B Chain B, Riboflavin Kinase Mj0056 From Methanocaldococcus
Jannaschii In Complex With Cdp And Fmn
Length = 136
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 60 FDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNA--VFYSLDWHPSNHVSFIDN 117
FD+N+ I+ E+F F R+ V + PI L+ + V +H S + I
Sbjct: 52 FDINKFKYIETEDFEFNGKRFFGVKVLPIKILIGNKKIDGAIVVPKKTYHSSEIIEIIAP 111
Query: 118 IKLR 121
+KLR
Sbjct: 112 MKLR 115
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
SGT++ + L + R K + EL E F +FD N DG ID EE A
Sbjct: 67 SGTIDFEEF------LVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELA 116
>pdb|1C7V|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
pdb|1C7W|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
Length = 81
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFAF 75
+ E+ F VFD N DG+ID +EF F
Sbjct: 7 EEEILRAFKVFDANGDGVIDFDEFKF 32
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22
A Resolution
pdb|3OQP|B Chain B, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22
A Resolution
Length = 211
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 4 PNSALLVIDVQNDFISGTLNL 24
P AL+VIDVQN++++G L +
Sbjct: 5 PRRALIVIDVQNEYVTGDLPI 25
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
SGT++ + L + R K + ELE+ F +FD N DG ID EE
Sbjct: 70 SGTIDFEEF------LVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELG 119
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|B Chain B, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|C Chain C, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|D Chain D, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
Length = 264
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 199 LKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTIL----IEDCCRGVDMD 254
GT+L L + ++ + V G CV + DAI G+R I+ I D GV
Sbjct: 150 FPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQW 209
Query: 255 DMERTRNTI--LENYGSCVQSDEVLGQHENT 283
++ N +E+ S VQ + L Q E+T
Sbjct: 210 NLYDIDNKFGDVESTDSVVQYLDALPQFEDT 240
>pdb|3MCW|A Chain A, Crystal Structure Of An A Putative Hydrolase Of The
Isochorismatase Family (Cv_1320) From Chromobacterium
Violaceum Atcc 12472 At 1.06 A Resolution
pdb|3MCW|B Chain B, Crystal Structure Of An A Putative Hydrolase Of The
Isochorismatase Family (Cv_1320) From Chromobacterium
Violaceum Atcc 12472 At 1.06 A Resolution
Length = 198
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%)
Query: 196 NKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDD 255
N GT L L A ++ V G++ V A+ A +G+ L ED C D D
Sbjct: 96 NSAFIGTGLEALLRANGWLELVVAGVSTSNSVEATVRXAGNLGFAVCLAEDGCFTFDKTD 155
Query: 256 MERTRNTILE 265
R + E
Sbjct: 156 WHGRRRSADE 165
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From
Pseudomonas Syringae Pv. Phaseolicola 1448a
Length = 233
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 174 DNAIKVYKGTDPEVDSYSV---FWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 230
D ++V + P+ D V F+ T L L A+ V + VCG +VC +
Sbjct: 99 DPDVEVIEALAPQSDDVIVDKLFYSG--FHNTDLDTVLRARDVDTIIVCGTVTNVCCETT 156
Query: 231 AIDAITIGYRTILIEDCCRGVDMDDM-----------ERTRNTILENYGSCVQSDEVLGQ 279
D + Y+ I + D +D D+ + TI +G + EV+ +
Sbjct: 157 IRDGVHREYKVIALSDANAAMDYPDVGFGAVSAADVQRISLTTIAYEFGEVTTTAEVIRR 216
Query: 280 HEN 282
E+
Sbjct: 217 IES 219
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFAFCW-NRWIKVVIEPINKLLDTVNFNA 99
+ E+ E F +FD + DG I E F N KV E I++++ +F+
Sbjct: 82 EEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDG 132
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 145 GETPIKNFQWVRHCLKN--GEEIH 166
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 140 GETPIKNFQWVRHCLKN--GEEIH 161
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 140 GETPIKNFQWVRHCLKN--GEEIH 161
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 145 GETPIKNFQWVRHCLKN--GEEIH 166
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 145 GETPIKNFQWVRHCLKN--GEEIH 166
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 137 GETPIKNFQWVRHCLKN--GEEIH 158
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 140 GETPIKNFQWVRHCLKN--GEEIH 161
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 144 GDTPIRQRLWPRHCVQDSWGAELH 167
G+TPI+ W RHC+++ G E+H
Sbjct: 147 GETPIKNFQWVRHCLKN--GEEIH 168
>pdb|1PON|A Chain A, Site Iii-Site Iv Troponin C Heterodimer, Nmr
pdb|1CTA|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTA|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
Length = 36
Score = 28.1 bits (61), Expect = 6.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFA 74
+ EL F +FD N DG ID EE
Sbjct: 4 EEELANAFRIFDKNADGYIDIEELG 28
>pdb|3G68|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(cd3275) From Clostridium Difficile 630 At 1.80 A
Resolution
pdb|3G68|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(cd3275) From Clostridium Difficile 630 At 1.80 A
Resolution
Length = 352
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 86 EPINKLLDTVN-FNAVF-YSLDWHPSNHVSFIDNIKLRKIHHT 126
E INK+LD +N F AV+ S W N +++ ++R I H+
Sbjct: 175 EEINKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRIIGHS 217
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 4 PNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLN 63
P +ID ++ SGT++ + L + R+ K + EL + F +FD N
Sbjct: 54 PEELQEMIDEVDEDGSGTVDFDEF------LVMMVRSMKDDSKGKSEEELSDLFRMFDKN 107
Query: 64 QDGLIDREEFAFCWNRWIKVVIE 86
DG ID EE + + E
Sbjct: 108 ADGYIDLEELKIMLQATGETITE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,752,760
Number of Sequences: 62578
Number of extensions: 372843
Number of successful extensions: 1340
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 119
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)