Query psy1561
Match_columns 285
No_of_seqs 253 out of 2067
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:05:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4003|consensus 100.0 7.1E-47 1.5E-51 316.9 9.0 213 5-275 1-214 (223)
2 PTZ00331 alpha/beta hydrolase; 100.0 5E-45 1.1E-49 322.4 20.2 201 3-278 10-211 (212)
3 PRK11609 nicotinamidase/pyrazi 100.0 2.4E-43 5.3E-48 311.0 20.7 204 5-279 2-210 (212)
4 cd01011 nicotinamidase Nicotin 100.0 2.1E-43 4.6E-48 308.3 18.8 194 6-271 2-196 (196)
5 PRK11440 putative hydrolase; P 100.0 1.7E-36 3.8E-41 262.7 17.2 155 83-280 32-188 (188)
6 PF00857 Isochorismatase: Isoc 100.0 5.6E-37 1.2E-41 260.9 13.5 172 6-275 1-174 (174)
7 cd01015 CSHase N-carbamoylsarc 100.0 1.5E-36 3.3E-41 261.1 15.7 151 83-277 24-178 (179)
8 PLN02621 nicotinamidase 100.0 4.5E-36 9.8E-41 262.3 16.7 153 84-281 39-195 (197)
9 COG1335 PncA Amidases related 100.0 1.6E-35 3.4E-40 259.1 16.8 161 82-280 32-202 (205)
10 TIGR03614 RutB pyrimidine util 100.0 2.6E-35 5.6E-40 262.7 18.0 174 83-283 46-222 (226)
11 cd01013 isochorismatase Isocho 100.0 1.2E-34 2.6E-39 254.4 14.9 148 83-274 54-203 (203)
12 PLN02743 nicotinamidase 100.0 2.5E-34 5.4E-39 258.1 16.6 148 83-273 58-236 (239)
13 cd00431 cysteine_hydrolases Cy 100.0 1.5E-32 3.3E-37 231.0 14.7 135 83-263 24-160 (161)
14 cd01012 YcaC_related YcaC rela 100.0 1.7E-31 3.8E-36 225.2 13.3 106 165-282 51-157 (157)
15 cd01014 nicotinamidase_related 100.0 2.3E-31 5E-36 224.0 10.8 122 83-260 23-146 (155)
16 COG1535 EntB Isochorismate hyd 99.9 3.9E-23 8.4E-28 174.3 9.5 155 83-281 55-211 (218)
17 KOG4044|consensus 99.6 4.7E-14 1E-18 117.9 12.7 94 177-283 79-173 (201)
18 PF00036 EF-hand_1: EF hand; 95.5 0.011 2.5E-07 35.6 2.1 25 52-76 1-25 (29)
19 PF13202 EF-hand_5: EF hand; P 93.5 0.065 1.4E-06 31.0 2.1 23 53-75 1-23 (25)
20 PF13405 EF-hand_6: EF-hand do 91.1 0.2 4.4E-06 30.1 2.3 26 52-77 1-26 (31)
21 PF13833 EF-hand_8: EF-hand do 87.4 0.6 1.3E-05 31.4 2.7 29 49-77 23-51 (54)
22 PF13499 EF-hand_7: EF-hand do 76.7 1.9 4.2E-05 29.9 2.0 30 52-81 1-30 (66)
23 PF14788 EF-hand_10: EF hand; 72.8 2.1 4.5E-05 29.4 1.3 29 49-77 19-47 (51)
24 smart00054 EFh EF-hand, calciu 71.1 3.3 7.2E-05 22.4 1.7 24 53-76 2-25 (29)
25 TIGR03849 arch_ComA phosphosul 71.0 17 0.00036 32.9 7.0 61 209-270 51-116 (237)
26 KOG0044|consensus 69.0 3.2 7E-05 36.3 1.9 50 19-77 41-90 (193)
27 KOG1250|consensus 68.6 12 0.00027 36.3 5.9 106 158-280 200-310 (457)
28 cd05022 S-100A13 S-100A13: S-1 68.4 4.6 9.9E-05 30.7 2.5 25 51-75 47-71 (89)
29 PF13499 EF-hand_7: EF-hand do 66.3 6.3 0.00014 27.2 2.7 27 49-75 38-64 (66)
30 cd05024 S-100A10 S-100A10: A s 65.7 5.4 0.00012 30.7 2.4 27 49-75 46-72 (91)
31 cd00052 EH Eps15 homology doma 62.9 7.7 0.00017 26.5 2.6 29 49-77 31-59 (67)
32 cd00213 S-100 S-100: S-100 dom 62.0 8.2 0.00018 28.5 2.8 34 49-82 49-82 (88)
33 cd05026 S-100Z S-100Z: S-100Z 58.6 9.1 0.0002 29.0 2.5 26 49-74 51-76 (93)
34 PRK05443 polyphosphate kinase; 58.5 61 0.0013 33.9 9.3 82 175-271 339-426 (691)
35 cd00252 SPARC_EC SPARC_EC; ext 58.2 18 0.00039 28.9 4.3 32 46-77 43-74 (116)
36 cd05029 S-100A6 S-100A6: S-100 57.5 10 0.00022 28.7 2.6 27 49-75 49-75 (88)
37 PF02679 ComA: (2R)-phospho-3- 57.5 20 0.00043 32.6 4.9 66 206-272 61-131 (244)
38 cd05025 S-100A1 S-100A1: S-100 56.8 10 0.00023 28.4 2.6 30 49-78 7-38 (92)
39 PRK12390 1-aminocyclopropane-1 53.0 57 0.0012 30.5 7.5 67 206-272 60-128 (337)
40 cd05031 S-100A10_like S-100A10 52.5 14 0.00029 27.9 2.6 29 49-77 49-77 (94)
41 TIGR03705 poly_P_kin polyphosp 50.9 71 0.0015 33.3 8.2 69 203-271 343-417 (672)
42 PF02739 5_3_exonuc_N: 5'-3' e 49.7 30 0.00065 29.4 4.6 43 203-245 90-132 (169)
43 TIGR01274 ACC_deam 1-aminocycl 48.8 68 0.0015 30.1 7.3 66 208-273 61-128 (337)
44 cd05027 S-100B S-100B: S-100B 48.1 17 0.00038 27.3 2.6 26 49-74 49-74 (88)
45 cd05025 S-100A1 S-100A1: S-100 47.0 19 0.00041 27.0 2.6 26 49-74 50-75 (92)
46 cd00252 SPARC_EC SPARC_EC; ext 45.9 19 0.00041 28.8 2.6 29 49-77 78-106 (116)
47 cd05023 S-100A11 S-100A11: S-1 45.9 16 0.00036 27.5 2.1 26 49-74 50-75 (89)
48 cd05030 calgranulins Calgranul 45.6 18 0.0004 27.0 2.3 26 49-74 49-74 (88)
49 KOG0037|consensus 45.5 17 0.00036 32.5 2.3 31 49-79 92-122 (221)
50 KOG0027|consensus 45.5 19 0.0004 29.6 2.6 31 49-79 83-113 (151)
51 smart00027 EH Eps15 homology d 42.5 24 0.00052 26.6 2.6 28 49-76 42-69 (96)
52 KOG1371|consensus 42.2 50 0.0011 31.4 5.1 41 213-254 2-42 (343)
53 PTZ00184 calmodulin; Provision 41.7 18 0.0004 28.5 1.9 33 49-81 45-77 (149)
54 smart00027 EH Eps15 homology d 39.3 26 0.00056 26.4 2.3 31 49-79 8-38 (96)
55 PF00185 OTCace: Aspartate/orn 37.3 2.2E+02 0.0048 23.6 7.9 67 215-281 4-72 (158)
56 cd00051 EFh EF-hand, calcium b 37.1 33 0.00071 21.9 2.4 27 49-75 34-60 (63)
57 PRK09564 coenzyme A disulfide 36.6 2.2E+02 0.0049 27.2 9.0 68 204-273 140-211 (444)
58 cd00213 S-100 S-100: S-100 dom 35.7 42 0.0009 24.6 2.9 29 49-77 6-36 (88)
59 COG2515 Acd 1-aminocyclopropan 35.3 83 0.0018 29.7 5.3 39 211-249 62-100 (323)
60 PRK13512 coenzyme A disulfide 34.5 2.6E+02 0.0056 27.1 9.1 67 204-272 139-208 (438)
61 cd05031 S-100A10_like S-100A10 33.5 41 0.00089 25.2 2.6 29 49-77 6-36 (94)
62 cd05027 S-100B S-100B: S-100B 33.2 38 0.00081 25.5 2.3 31 49-79 6-38 (88)
63 cd06449 ACCD Aminocyclopropane 33.1 1.3E+02 0.0029 27.6 6.5 63 209-271 48-112 (307)
64 PHA03003 palmytilated EEV memb 32.9 1.7E+02 0.0036 28.0 7.3 40 227-272 65-104 (369)
65 PF14658 EF-hand_9: EF-hand do 32.4 38 0.00082 24.4 2.1 33 49-81 33-66 (66)
66 PRK07200 aspartate/ornithine c 31.8 2.7E+02 0.0058 27.2 8.5 67 215-281 189-261 (395)
67 PF13090 PP_kinase_C: Polyphos 30.8 59 0.0013 31.1 3.7 68 204-271 23-96 (352)
68 COG0855 Ppk Polyphosphate kina 30.6 2.1E+02 0.0045 29.8 7.6 83 174-271 342-430 (696)
69 PF02481 DNA_processg_A: DNA r 30.2 1.3E+02 0.0029 26.4 5.7 67 203-272 65-132 (212)
70 PRK03515 ornithine carbamoyltr 29.8 2.8E+02 0.0062 26.3 8.2 67 215-281 158-224 (336)
71 PF06230 DUF1009: Protein of u 29.3 27 0.00058 31.1 1.1 71 204-280 4-79 (214)
72 PF08659 KR: KR domain; Inter 28.4 2.6E+02 0.0056 23.3 7.1 65 201-268 13-80 (181)
73 PRK03910 D-cysteine desulfhydr 28.1 1.4E+02 0.0031 27.8 5.8 64 209-272 60-125 (331)
74 PRK14045 1-aminocyclopropane-1 28.0 1.5E+02 0.0033 27.6 6.0 41 208-248 65-105 (329)
75 COG5126 FRQ1 Ca2+-binding prot 27.5 50 0.0011 28.0 2.4 26 49-74 90-115 (160)
76 TIGR00732 dprA DNA protecting 27.4 4.2E+02 0.0091 23.4 8.4 67 203-272 65-132 (220)
77 PRK12309 transaldolase/EF-hand 27.0 60 0.0013 31.5 3.1 26 49-74 332-357 (391)
78 PF00465 Fe-ADH: Iron-containi 26.7 2.1E+02 0.0045 27.0 6.7 67 202-269 12-80 (366)
79 COG5126 FRQ1 Ca2+-binding prot 26.6 47 0.001 28.2 2.0 29 49-77 126-154 (160)
80 PF00070 Pyr_redox: Pyridine n 26.4 2.4E+02 0.0052 20.0 5.9 56 216-273 2-60 (80)
81 cd00138 PLDc Phospholipase D. 26.3 3.5E+02 0.0077 21.9 7.8 63 203-266 25-94 (176)
82 PF01408 GFO_IDH_MocA: Oxidore 26.1 2.9E+02 0.0063 20.8 9.3 65 202-270 52-116 (120)
83 PRK12562 ornithine carbamoyltr 25.9 3.8E+02 0.0083 25.4 8.3 66 214-280 157-223 (334)
84 cd00640 Trp-synth-beta_II Tryp 25.6 2.6E+02 0.0057 24.4 6.9 61 206-273 40-102 (244)
85 COG0303 MoeA Molybdopterin bio 25.4 2.5E+02 0.0055 27.4 7.1 58 202-261 206-265 (404)
86 COG3494 Uncharacterized protei 24.9 62 0.0014 29.7 2.6 78 202-281 58-137 (279)
87 PLN02964 phosphatidylserine de 24.8 54 0.0012 34.0 2.5 33 49-81 213-245 (644)
88 cd03174 DRE_TIM_metallolyase D 24.8 4.2E+02 0.0091 23.2 8.1 41 229-269 119-161 (265)
89 cd07939 DRE_TIM_NifV Streptomy 24.7 5E+02 0.011 23.2 8.6 35 231-265 145-179 (259)
90 PF08643 DUF1776: Fungal famil 24.7 99 0.0021 29.0 4.0 32 214-245 4-35 (299)
91 PTZ00183 centrin; Provisional 24.6 63 0.0014 25.8 2.4 28 50-77 89-116 (158)
92 TIGR00732 dprA DNA protecting 24.4 3.5E+02 0.0076 23.9 7.3 62 214-279 157-219 (220)
93 TIGR03385 CoA_CoA_reduc CoA-di 24.4 5.3E+02 0.011 24.6 9.2 67 204-272 128-198 (427)
94 PRK10736 hypothetical protein; 24.3 4.1E+02 0.0088 25.7 8.2 68 202-272 127-195 (374)
95 TIGR01917 gly_red_sel_B glycin 24.3 1.2E+02 0.0025 29.9 4.5 48 200-248 324-374 (431)
96 PRK04284 ornithine carbamoyltr 23.8 4.4E+02 0.0095 24.9 8.3 66 214-280 156-222 (332)
97 TIGR00762 DegV EDD domain prot 23.8 3E+02 0.0064 25.0 7.0 68 209-280 75-145 (275)
98 cd08182 HEPD Hydroxyethylphosp 23.8 4.6E+02 0.01 24.7 8.5 63 203-266 13-76 (367)
99 PTZ00183 centrin; Provisional 23.7 67 0.0015 25.6 2.5 29 49-77 15-43 (158)
100 KOG4223|consensus 23.6 51 0.0011 31.1 1.9 41 33-74 222-264 (325)
101 COG0678 AHP1 Peroxiredoxin [Po 23.6 1.3E+02 0.0028 25.6 4.0 52 202-254 62-113 (165)
102 PRK02102 ornithine carbamoyltr 23.4 4.6E+02 0.01 24.8 8.3 66 214-280 156-222 (331)
103 PRK01713 ornithine carbamoyltr 22.8 4.5E+02 0.0098 24.8 8.1 65 215-280 158-223 (334)
104 PRK08329 threonine synthase; V 22.7 4.7E+02 0.01 24.6 8.3 60 205-272 96-155 (347)
105 KOG0027|consensus 22.5 75 0.0016 25.9 2.5 29 49-77 6-34 (151)
106 cd06448 L-Ser-dehyd Serine deh 22.2 4.1E+02 0.0088 24.6 7.7 52 213-272 51-102 (316)
107 KOG0031|consensus 22.1 83 0.0018 26.8 2.6 29 49-77 30-58 (171)
108 PRK03670 competence damage-ind 22.1 4E+02 0.0086 24.2 7.3 52 202-254 23-76 (252)
109 TIGR02764 spore_ybaN_pdaB poly 22.0 4.1E+02 0.0089 22.3 7.1 77 199-277 107-191 (191)
110 KOG4223|consensus 21.7 51 0.0011 31.1 1.5 47 19-74 177-223 (325)
111 cd01563 Thr-synth_1 Threonine 21.7 3.9E+02 0.0085 24.5 7.5 58 207-272 64-121 (324)
112 cd08189 Fe-ADH5 Iron-containin 21.6 5.5E+02 0.012 24.3 8.6 30 236-265 52-81 (374)
113 TIGR01918 various_sel_PB selen 21.4 1.4E+02 0.0031 29.3 4.5 46 200-246 324-372 (431)
114 PF05991 NYN_YacP: YacP-like N 21.1 1.6E+02 0.0034 24.8 4.3 17 265-281 112-128 (166)
115 cd00008 53EXOc 5'-3' exonuclea 20.9 1.6E+02 0.0034 26.3 4.5 44 202-245 88-131 (240)
116 PTZ00184 calmodulin; Provision 20.6 91 0.002 24.4 2.6 27 49-75 9-35 (149)
117 PRK08703 short chain dehydroge 20.6 4E+02 0.0087 22.7 6.9 19 201-220 19-37 (239)
118 TIGR03316 ygeW probable carbam 20.5 5.7E+02 0.012 24.5 8.3 66 215-280 172-243 (357)
119 PF03853 YjeF_N: YjeF-related 20.4 2.4E+02 0.0052 23.6 5.3 61 212-272 25-86 (169)
120 PF10591 SPARC_Ca_bdg: Secrete 20.3 1E+02 0.0022 24.3 2.8 32 45-76 48-79 (113)
121 cd07943 DRE_TIM_HOA 4-hydroxy- 20.2 5.3E+02 0.011 23.1 7.8 42 228-269 115-156 (263)
122 PRK02255 putrescine carbamoylt 20.2 5.8E+02 0.013 24.2 8.3 65 215-280 156-220 (338)
123 PF06971 Put_DNA-bind_N: Putat 20.0 1.3E+02 0.0029 20.3 2.9 24 257-280 15-38 (50)
No 1
>KOG4003|consensus
Probab=100.00 E-value=7.1e-47 Score=316.92 Aligned_cols=213 Identities=31% Similarity=0.513 Sum_probs=179.4
Q ss_pred ceEEEEEeeeccCCcccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccchhhh
Q psy1561 5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVV 84 (285)
Q Consensus 5 ~~aLliiD~QndF~~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~i 84 (285)
+.+||||||||||++|++......+ |. ..|
T Consensus 1 ~~~l~vvd~qndfi~~~~~~~s~~E-------------~~-------------------------------------~~i 30 (223)
T KOG4003|consen 1 MKTLIVVDMQNDFISPLGSLTSVPE-------------GE-------------------------------------ELI 30 (223)
T ss_pred CceEEEEeccccccccccccccCCC-------------ch-------------------------------------hhh
Confidence 5799999999999998877753221 11 025
Q ss_pred HHHHHHHHhhc-CCCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCCCC
Q psy1561 85 IEPINKLLDTV-NFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWG 163 (285)
Q Consensus 85 v~~I~~L~~~~-~~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt~G 163 (285)
.|.++.|.+.- .|+.|++|.||||.+|+||.+++..+.|.|.. +...+++|+.+.. +..+||.||+++|||
T Consensus 31 ~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~--t~~~~~~~d~V~~------~~vl~p~HCv~ntwG 102 (223)
T KOG4003|consen 31 NPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTY--TYHSPRPGDDVTQ------EGILWPVHCVKNTWG 102 (223)
T ss_pred ccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCC--cccCCCcCCchhe------eeecchhhhhccCCC
Confidence 55555555433 36799999999999999999988776665543 4445667777643 235899999999999
Q ss_pred ccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEE
Q psy1561 164 AELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTIL 243 (285)
Q Consensus 164 ~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~V 243 (285)
.++++++.......+|.||.+++.|+||||+|+++++.|+|..+|++++|+.|+|+|+|+|+||+.||++|...||+++|
T Consensus 103 ~d~~~~~~~~~~~~~I~KG~D~~~eSYSaF~D~~GR~kt~L~~~L~k~~Id~V~IAGvA~DICVk~TaL~A~~~~y~t~v 182 (223)
T KOG4003|consen 103 VDQIMDQVVTKHIKIIDKGFDTDRESYSAFHDIWGRHKTDLNKYLEKHHIDEVYIAGVALDICVKATALSAAELGYKTTV 182 (223)
T ss_pred CCcchhhhhhhheeecccCcchhHHHHHHHhhhcccchhhHHHHHHHcCCCeEEEeehhhHHHHHHHHhhHHHhCcceee
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCHHHHHHHHHHHHHcCCEEEeHHH
Q psy1561 244 IEDCCRGVDMDDMERTRNTILENYGSCVQSDE 275 (285)
Q Consensus 244 v~Da~~~~~~~~~~~al~~m~~~g~~vits~e 275 (285)
+..|+++.+.+.++.+...+...+..+++-++
T Consensus 183 I~E~~~Gsst~si~~~~~~F~k~k~e~IS~~~ 214 (223)
T KOG4003|consen 183 ILEYTRGSSTPSISDDPEVFNKVKEELISHNI 214 (223)
T ss_pred ehhhhccCCCcccccCHHHHHHhhHHHhhccc
Confidence 99999999999999988888888888777544
No 2
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=5e-45 Score=322.36 Aligned_cols=201 Identities=42% Similarity=0.693 Sum_probs=172.5
Q ss_pred CCceEEEEEeeeccCCc-ccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccch
Q psy1561 3 RPNSALLVIDVQNDFIS-GTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWI 81 (285)
Q Consensus 3 ~~~~aLliiD~QndF~~-G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi 81 (285)
+.++|||||||||||++ |+|.+++..
T Consensus 10 ~~~~ALlVIDmQndF~~~g~l~~~~~~----------------------------------------------------- 36 (212)
T PTZ00331 10 STNDALIIVDVQNDFCKGGSLAVPDAE----------------------------------------------------- 36 (212)
T ss_pred CCCCEEEEEcCCCCCCCCCccCCCCHH-----------------------------------------------------
Confidence 45899999999999994 888776532
Q ss_pred hhhHHHHHHHHhhcCCCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCC
Q psy1561 82 KVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDS 161 (285)
Q Consensus 82 ~~iv~~I~~L~~~~~~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt 161 (285)
++++.|++|++.+++..|++++||||++|++|..+..+.+..+ .+.....||+||++||
T Consensus 37 -~iv~~i~~l~~~~~~~~Vi~~~d~h~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~h~~~gs 95 (212)
T PTZ00331 37 -EVIPVINQVRQSHHFDLVVATQDWHPPNHISFASNHGKPKILP--------------------DGTTQGLWPPHCVQGT 95 (212)
T ss_pred -HHHHHHHHHHHhcCCCEEEEecCcCCCCCcChhhcCCCCCccc--------------------CCCccCCCcccccCCC
Confidence 3899999999976667899999999999998854322111111 0123558999999999
Q ss_pred CCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeE
Q psy1561 162 WGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRT 241 (285)
Q Consensus 162 ~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v 241 (285)
||++|+|+|.+.+.+.++.|++++++++||+|. +.+..+|+|+.+|+++|+++|+|||++||+||.+|+++|.++||+|
T Consensus 96 ~g~~i~~~L~~~~~~~vi~K~~~~~~~~~saF~-~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v 174 (212)
T PTZ00331 96 KGAQLHKDLVVERIDIIIRKGTNRDVDSYSAFD-NDKGSKTGLAQILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKV 174 (212)
T ss_pred CcccCChhhccCCCcEEEECCCCCCCceecCcc-CCCCCCchHHHHHHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEE
Confidence 999999999998889999999999999999992 2222389999999999999999999999999999999999999999
Q ss_pred EEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHH
Q psy1561 242 ILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLG 278 (285)
Q Consensus 242 ~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~ 278 (285)
+|++|||++++++.|+++++.|...|+.|+++++++.
T Consensus 175 ~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~~~~~~~ 211 (212)
T PTZ00331 175 VVLEDATRAVDPDAISKQRAELLEAGVILLTSSDLVA 211 (212)
T ss_pred EEeCcCccCCCHHHHHHHHHHHHHCCCEEEeHHHhhh
Confidence 9999999999999999999999999999999999875
No 3
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=2.4e-43 Score=311.04 Aligned_cols=204 Identities=35% Similarity=0.548 Sum_probs=170.2
Q ss_pred ceEEEEEeeeccCC-cccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccchhh
Q psy1561 5 NSALLVIDVQNDFI-SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKV 83 (285)
Q Consensus 5 ~~aLliiD~QndF~-~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~ 83 (285)
|+|||||||||||+ +|+|++++.. +
T Consensus 2 ~~ALlvID~Qndf~~~g~l~~~~~~------------------------------------------------------~ 27 (212)
T PRK11609 2 KRALLLVDLQNDFCAGGALAVPEGD------------------------------------------------------S 27 (212)
T ss_pred CcEEEEEeCCccCCCCCccccCCHH------------------------------------------------------H
Confidence 68999999999999 5777765432 3
Q ss_pred hHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCC
Q psy1561 84 VIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDS 161 (285)
Q Consensus 84 iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt 161 (285)
++++|++|++.+| ..+||+++|||+++|.+|..+... .|+. ...+.+ ..+.+||+||++||
T Consensus 28 ~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~~~---~~~~~~~~~~~~gt 90 (212)
T PRK11609 28 TIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGA---EPGT-----------QGELDG---LPQTWWPDHCVQNS 90 (212)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCC---CCcc-----------ccccCC---cccccCcccccCCC
Confidence 8899999999875 469999999999999888543211 0110 000111 22457999999999
Q ss_pred CCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeE
Q psy1561 162 WGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRT 241 (285)
Q Consensus 162 ~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v 241 (285)
+|++++++|.+.+.+.++.|+.++..++||+|+++....+|+|+.+|+++||++|+|||++|++||.+|+++|.++||+|
T Consensus 91 ~g~el~~~l~~~~~d~vi~K~~~~~~~~~SaF~~~~~~~~T~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v 170 (212)
T PRK11609 91 EGAALHPLLNQKAIDAVFHKGENPLIDSYSAFFDNGHRQKTALDDWLREHGITELIVMGLATDYCVKFTVLDALALGYQV 170 (212)
T ss_pred CcCccChhhcccCCCEEEECCCCCCCcccccccCCCCCCCccHHHHHHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEE
Confidence 99999999998888999999988888899999854444479999999999999999999999999999999999999999
Q ss_pred EEeCCCCccCC--HHHHHHHHHHHHHcCCEEEeHHHHHHH
Q psy1561 242 ILIEDCCRGVD--MDDMERTRNTILENYGSCVQSDEVLGQ 279 (285)
Q Consensus 242 ~Vv~Da~~~~~--~~~~~~al~~m~~~g~~vits~e~i~~ 279 (285)
+|++|||++++ ++.|+.+++.|...|+.|++++++++.
T Consensus 171 ~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~~~~~~~ 210 (212)
T PRK11609 171 NVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTLADWEET 210 (212)
T ss_pred EEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEHHHHHhh
Confidence 99999999985 788899999999999999999998753
No 4
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=2.1e-43 Score=308.28 Aligned_cols=194 Identities=42% Similarity=0.667 Sum_probs=165.4
Q ss_pred eEEEEEeeeccCCc-ccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccchhhh
Q psy1561 6 SALLVIDVQNDFIS-GTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVV 84 (285)
Q Consensus 6 ~aLliiD~QndF~~-G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~i 84 (285)
+|||||||||||++ |+|.+++.. ++
T Consensus 2 tALlvID~Qndf~~~g~l~~~~~~------------------------------------------------------~~ 27 (196)
T cd01011 2 DALLVVDVQNDFCPGGALAVPGGD------------------------------------------------------AI 27 (196)
T ss_pred ceEEEEcCCCCCCCCCcccCCCHH------------------------------------------------------HH
Confidence 69999999999995 888776432 38
Q ss_pred HHHHHHHHhhcCCCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCCCCc
Q psy1561 85 IEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGA 164 (285)
Q Consensus 85 v~~I~~L~~~~~~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt~G~ 164 (285)
++.|++|++.+|..+||+|+|+|++++.+|+...++..+.+ ..++.....||.||++||||+
T Consensus 28 v~~i~~l~~~arg~~Vi~~~~~h~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~gs~g~ 89 (196)
T cd01011 28 VPLINALLSLFQYDLVVATQDWHPANHASFASNHPGQMPFI------------------TLPPGPQVLWPDHCVQGTPGA 89 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCcChhhcCCCCCCcc------------------ccCCCCcCcCCCccCCCCCCC
Confidence 99999999998866999999999999888866432221110 011233568999999999999
Q ss_pred cccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEe
Q psy1561 165 ELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILI 244 (285)
Q Consensus 165 el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv 244 (285)
+++++|.+.+.+.++.|+..+++++||+|+.+.+..+|+|.++|+++||++|+|||++|++||.+|+++|.++||+|+|+
T Consensus 90 ~i~~~l~~~~~d~vi~K~~~~~~~~~saF~~~~~~~~t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~ 169 (196)
T cd01011 90 ELHPGLPVPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVL 169 (196)
T ss_pred ccCcccccCCCCEEEECCCCCCCceeeeeecCCccCchhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEe
Confidence 99999998888999999999999999999833333349999999999999999999999999999999999999999999
Q ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEE
Q psy1561 245 EDCCRGVDMDDMERTRNTILENYGSCV 271 (285)
Q Consensus 245 ~Da~~~~~~~~~~~al~~m~~~g~~vi 271 (285)
+|||++++++.|+.+++.|...|+.++
T Consensus 170 ~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 170 EDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred ccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 999999999999999999999988764
No 5
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=1.7e-36 Score=262.68 Aligned_cols=155 Identities=19% Similarity=0.358 Sum_probs=135.3
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
+++++|++|++.+| ..+||++++.|.++...+.. .|. ....|.||+.|
T Consensus 32 ~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~-------~~~-----------------------~~~~~~~~~~~ 81 (188)
T PRK11440 32 EVVARAARLAAKFRASGSPVVLVRVGWSADYAEALK-------QPV-----------------------DAPSPAKVLPE 81 (188)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhcc-------Ccc-----------------------cccccccccCC
Confidence 38999999999875 46999999998765432210 000 12347899999
Q ss_pred CCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe
Q psy1561 161 SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR 240 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~ 240 (285)
++ ++++++|.+.+++.++.|. +||+|+ +|+|+.+|+++|+++|+|||++|++||.+|+++|.++||+
T Consensus 82 ~~-~~~~~~l~~~~~d~vi~K~------~~saF~------~T~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~ 148 (188)
T PRK11440 82 NW-WQHPAALGKTDSDIEVTKR------QWGAFY------GTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFN 148 (188)
T ss_pred cc-cccCcccCCCCCCEEEecC------CcCCCC------CCCHHHHHHHCCCCEEEEeeechhHHHHHHHHHHHHCCCE
Confidence 88 7999999999999999998 799997 9999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 241 TILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 241 v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
|+|++|||++.+++.|+.+++.|...++.|++++++++.|
T Consensus 149 v~vv~Da~as~~~~~h~~al~~~~~~~a~v~~~~~~~~~l 188 (188)
T PRK11440 149 LVIAEDACSAASAEQHQNSMNHIFPRIARVRSVEEILNAL 188 (188)
T ss_pred EEEechhhcCCCHHHHHHHHHHHHhheeEEeeHHHHHhhC
Confidence 9999999999999999999999988899999999998764
No 6
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=5.6e-37 Score=260.90 Aligned_cols=172 Identities=38% Similarity=0.599 Sum_probs=148.5
Q ss_pred eEEEEEeeeccCCcccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhhccchhhhH
Q psy1561 6 SALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVI 85 (285)
Q Consensus 6 ~aLliiD~QndF~~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~iv 85 (285)
+|||||||||||+++.+..++.. .++
T Consensus 1 TaLlvID~Q~~f~~~~~~~~~~~------------------------------------------------------~~i 26 (174)
T PF00857_consen 1 TALLVIDMQNDFINGSLAPPNAE------------------------------------------------------AII 26 (174)
T ss_dssp EEEEEES-BHHHHTSTTTSTTHH------------------------------------------------------HHH
T ss_pred CEEEEEeChhhhhcCCccccCHH------------------------------------------------------HHH
Confidence 69999999999996666555432 388
Q ss_pred HHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCCCCC
Q psy1561 86 EPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWG 163 (285)
Q Consensus 86 ~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~Gt~G 163 (285)
++|++|++.+| ..+|+++++.|+..+... ......|+.||..|++|
T Consensus 27 ~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~g~~~ 74 (174)
T PF00857_consen 27 PNINRLLDAARAAGVPVIHTRDIHDSPHWSG--------------------------------PFEPKPWPPHCIPGSPG 74 (174)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESBSTTTTTT--------------------------------SGGHSCHTSCSBTTSGG
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeeccccccc--------------------------------ccccccccccccCCCCc
Confidence 99999999775 458999999999332211 11234678999999999
Q ss_pred ccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEE
Q psy1561 164 AELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTIL 243 (285)
Q Consensus 164 ~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~V 243 (285)
++++++|.+.+++.+|.|. +||+|. +|+|.++|+++|+++|+|||++|++||.+|+++|+++||+|+|
T Consensus 75 ~~l~~~l~~~~~~~vi~K~------~~saf~------~t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v 142 (174)
T PF00857_consen 75 AELVPELAPQPGDPVIEKN------RYSAFF------GTDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIV 142 (174)
T ss_dssp GSBHGGGHCHTTSEEEEES------SSSTTT------TSSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEE
T ss_pred cceeeEeecccccceEEee------cccccc------cccccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEE
Confidence 9999999998899999998 799996 9999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCHHHHHHHHHHHHHcCCEEEeHHH
Q psy1561 244 IEDCCRGVDMDDMERTRNTILENYGSCVQSDE 275 (285)
Q Consensus 244 v~Da~~~~~~~~~~~al~~m~~~g~~vits~e 275 (285)
++|||++++++.|+.+++.|...|+.|++++|
T Consensus 143 ~~Da~~~~~~~~h~~~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 143 VEDACASYSPEAHEAALEELRKRGAEVITSAE 174 (174)
T ss_dssp EEEEEEBSSHHHHHHHHHHHHHHTSEEE-HHH
T ss_pred EChhhcCCCHHHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999999999999999986
No 7
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=1.5e-36 Score=261.15 Aligned_cols=151 Identities=26% Similarity=0.362 Sum_probs=131.8
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCC--cccc
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWP--RHCV 158 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP--~Hcv 158 (285)
+++++|++|++.+| ..+|++++++|++++... + .| ...|| .+|.
T Consensus 24 ~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~----------~----------~~------------~~~~~~~~~~~ 71 (179)
T cd01015 24 AALENVQRLLAAARAAGVPVIHTTVVYDPDGADG----------G----------LW------------ARKVPAMSDLV 71 (179)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeeECCccCcc----------c----------hh------------hhccccccccc
Confidence 38899999999775 459999999997663210 0 00 00122 4688
Q ss_pred CCCCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCC
Q psy1561 159 QDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIG 238 (285)
Q Consensus 159 ~Gt~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G 238 (285)
.||+|++++++|.+.+++.++.|. +||+|+ +|+|+.+|+++||++|+|||++||+||.+|+++|.++|
T Consensus 72 ~gs~~~~~~~~l~~~~~~~v~~K~------~~saF~------~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~G 139 (179)
T cd01015 72 EGSPLAAICDELAPQEDEMVLVKK------YASAFF------GTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHG 139 (179)
T ss_pred CCCCccccccccCCCCCCEEEecC------ccCCcc------CCcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCC
Confidence 999999999999999889999998 799997 89999999999999999999999999999999999999
Q ss_pred CeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHH
Q psy1561 239 YRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVL 277 (285)
Q Consensus 239 ~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i 277 (285)
|+|+|++|||++.+++.|+.++..|...++.|+++++++
T Consensus 140 y~v~vv~Da~a~~~~~~h~~al~~l~~~~~~v~~t~~~~ 178 (179)
T cd01015 140 FRPIVVRECVGDRAPAPHEANLFDIDNKYGDVVSTDDAL 178 (179)
T ss_pred CeEEEeeccccCCCHHHHHHHHHHHHhhceeeccHHHHh
Confidence 999999999999999999999999999999999999986
No 8
>PLN02621 nicotinamidase
Probab=100.00 E-value=4.5e-36 Score=262.26 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=134.8
Q ss_pred hHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCcc-ccCC
Q psy1561 84 VIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRH-CVQD 160 (285)
Q Consensus 84 iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~H-cv~G 160 (285)
++++|++|++.+| ..+|++|+|+|+..... .+ ....||.| |+.|
T Consensus 39 ~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~----------~~-----------------------~~~~~~~~~~~~g 85 (197)
T PLN02621 39 ILPALLTTIDLCRRASIPVFFTRHSHKSPSDY----------GM-----------------------LGEWWDGDLILDG 85 (197)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeccCCCcchh----------hh-----------------------hhhhcCCccccCC
Confidence 7888999998764 46999999999643210 00 02347877 9999
Q ss_pred CCCccccccccc-cccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCC
Q psy1561 161 SWGAELHKDLKV-VDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY 239 (285)
Q Consensus 161 t~G~el~~eL~~-~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~ 239 (285)
++|++++++|.+ .+++.++.|+ +||+|+ +|+|+.+|+++|+++|+|+|++||+||.+|+++|.++||
T Consensus 86 s~g~~i~~~L~~~~~~~~vi~K~------~~saf~------~t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy 153 (197)
T PLN02621 86 TTEAELMPEIGRVTGPDEVVEKS------TYSAFY------NTRLEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGF 153 (197)
T ss_pred CCccccchhccCCCCCCEEEECC------CcCCCC------CCcHHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCC
Confidence 999999999998 6778899998 799997 899999999999999999999999999999999999999
Q ss_pred eEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHhh
Q psy1561 240 RTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE 281 (285)
Q Consensus 240 ~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l~ 281 (285)
+|+|++|||++++++.|+.+++.|...|+.++++++++..+-
T Consensus 154 ~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~~~~~~~~~~ 195 (197)
T PLN02621 154 RVFFSTDATATANEELHEATLKNLAYGFAYLVDCDRLEAGLL 195 (197)
T ss_pred EEEEeccccCCCCHHHHHHHHHHHHhhceEeecHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 9
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-35 Score=259.14 Aligned_cols=161 Identities=31% Similarity=0.504 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccC
Q psy1561 82 KVVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQ 159 (285)
Q Consensus 82 ~~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~ 159 (285)
+.++|++++|++.+| ..+||+|+|+|++++.++..- +. . . .... ||+||++
T Consensus 32 ~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~-------~~-----------------~-~-~~~~-~~~h~~~ 84 (205)
T COG1335 32 RKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGS-------PE-----------------S-S-KLFP-WPRHDVK 84 (205)
T ss_pred hhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccc-------cc-----------------c-c-cCCC-CcchhcC
Confidence 348999999999875 579999999999987664210 00 0 0 0112 9999999
Q ss_pred CCCCcccccccccccc------ceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHH
Q psy1561 160 DSWGAELHKDLKVVDN------AIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAID 233 (285)
Q Consensus 160 Gt~G~el~~eL~~~~~------~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~d 233 (285)
||+|++++++|.+... +.++.|. ++||+|+ +|+|+.+||++||++|+|||++||+||.+|+++
T Consensus 85 g~~g~~~~~~l~~~~~~~~~~~~~~~~k~-----~~~saF~------~T~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~ 153 (205)
T COG1335 85 GTPGAELLGELPPAVDDAQLVPEDVIFKK-----HGYSAFA------GTDLDDILRNLGIDTVVVCGIATDICVLATARD 153 (205)
T ss_pred CCcchhhccccccccccccccceeeeccc-----cccCccc------CCCHHHHHHHCCCCEEEEeeeehhHHHHHHHHH
Confidence 9999999999998766 4555554 3799997 999999999999999999999999999999999
Q ss_pred HHhCCCeEEEeCCCCccCC-HHHHHHHHHHHHH-cCCEEEeHHHHHHHh
Q psy1561 234 AITIGYRTILIEDCCRGVD-MDDMERTRNTILE-NYGSCVQSDEVLGQH 280 (285)
Q Consensus 234 a~~~G~~v~Vv~Da~~~~~-~~~~~~al~~m~~-~g~~vits~e~i~~l 280 (285)
|.++||+|++++|||++++ ...+..++..+.. ..+.++++++.+..+
T Consensus 154 A~~~gy~v~v~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (205)
T COG1335 154 AFDLGYQVTLVEDATAGSSLDRSGEAAARLEKHHIFGAVLDTEEALALW 202 (205)
T ss_pred HHHCCCeEEEehhhcccCCCChHHHHHHHHHHhhhhcceeehHHHHhhh
Confidence 9999999999999999999 4556666666666 366777766665554
No 10
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=2.6e-35 Score=262.68 Aligned_cols=174 Identities=20% Similarity=0.233 Sum_probs=137.5
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
.++++|++|++.+| ..+||+++|+|.++..... .++ .|.. ........+ +.....++.+|..|
T Consensus 46 ~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~~--~~~---~~~~------~~~~~~~~~----~~~~~~~~~~~~~g 110 (226)
T TIGR03614 46 PVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEAG--GPG---SPNW------HKSNALKTM----RKRPELQGKLLAKG 110 (226)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecccChhhhhcc--CCC---cccc------ccccccccc----ccCcccccceeecC
Confidence 38889999998775 4699999999977632100 000 0000 000000000 00112346789999
Q ss_pred CCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe
Q psy1561 161 SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR 240 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~ 240 (285)
|||++++++|.+.+++.++.|. +||+|+ +|+|+.+|+++||++|+|||++||+||.+|+++|.++||+
T Consensus 111 ~~g~~~~~~l~p~~~d~vi~K~------~~saF~------~T~L~~~Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~ 178 (226)
T TIGR03614 111 TWDYELVDELQPQPGDIVLPKP------RYSGFF------NTPLDSMLRARGIRNLVFTGIATNVCVESTLRDGFHLEYF 178 (226)
T ss_pred CCCcccCcccCCCCCCEEEeCC------CcCCCC------CCCHHHHHHHCCCCEEEEeccCccHhHHHHHHHHHHCCCE
Confidence 9999999999998889999998 799997 9999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCH-HHHHHHHHHHHHcCCEEEeHHHHHHHhhcc
Q psy1561 241 TILIEDCCRGVDM-DDMERTRNTILENYGSCVQSDEVLGQHENT 283 (285)
Q Consensus 241 v~Vv~Da~~~~~~-~~~~~al~~m~~~g~~vits~e~i~~l~~~ 283 (285)
|+|++|||++.++ +.|+.++..|...++.|++++++++.+...
T Consensus 179 v~vv~Da~a~~~~~~~h~~~l~~l~~~~~~v~~~~~~~~~l~~~ 222 (226)
T TIGR03614 179 GVVLEDATHQAGPDFMQKAALYNIETFFGWVSDVADFCGTFSQN 222 (226)
T ss_pred EEEechhccCCCchHHHHHHHHHHHhHheeeecHHHHHHHHhhc
Confidence 9999999999986 579999999999999999999999988543
No 11
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=1.2e-34 Score=254.41 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=129.9
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
+++++|++|++.+| ..+||+|+++|...+.. .. .....|++++..|
T Consensus 54 ~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~--~~------------------------------~~~~~~~~~~~~~ 101 (203)
T cd01013 54 QLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQ--RA------------------------------LLNDFWGPGLTAS 101 (203)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCCChhH--HH------------------------------HHHHHhhccCCCC
Confidence 48999999999875 46999999877533210 00 0123588899899
Q ss_pred CCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe
Q psy1561 161 SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR 240 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~ 240 (285)
++|++++++|.+.+++.++.|. +||+|+ +|+|+.+||++|+++|+|||++|++||.+|+++|.++||+
T Consensus 102 ~~~~~~~~~l~~~~~d~vi~K~------~~saF~------~T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~ 169 (203)
T cd01013 102 PEETKIVTELAPQPDDTVLTKW------RYSAFK------RSPLLERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQ 169 (203)
T ss_pred CCccccccccCCCCCCEEEeCC------CcCCcC------CCCHHHHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCe
Confidence 9999999999998889999998 799997 9999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHH
Q psy1561 241 TILIEDCCRGVDMDDMERTRNTILENYGSCVQSD 274 (285)
Q Consensus 241 v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~ 274 (285)
|+|++|||++.+++.|+.+|+.|...++.|++++
T Consensus 170 v~vv~Da~as~~~~~h~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 170 PFVVADAIADFSLEEHRMALKYAATRCAMVVSTD 203 (203)
T ss_pred EEEeccccCCCCHHHHHHHHHHHHhheeEeeecC
Confidence 9999999999999999999999999999998864
No 12
>PLN02743 nicotinamidase
Probab=100.00 E-value=2.5e-34 Score=258.06 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=122.7
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
.++++|++|++.+| ..+||+++|+|.++..+ ..||+||+.|
T Consensus 58 ~iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~~-------------------------------------~~~~~h~v~G 100 (239)
T PLN02743 58 KMVDESARLAREFCERKWPVLAFLDSHHPDKPE-------------------------------------HPYPPHCIVG 100 (239)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeCccCCCccc-------------------------------------cCCCCccCCC
Confidence 48899999999875 45999999999765421 2389999999
Q ss_pred CCCccccccccccccce---ecccCCCCCCCccccccccccCCCcc-HHHHHHhCCccEEEEEcccCchhHH---HHHHH
Q psy1561 161 SWGAELHKDLKVVDNAI---KVYKGTDPEVDSYSVFWDNKKLKGTS-LAKQLEAKKVTDVYVCGLAYDVCVG---ASAID 233 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~---vi~K~~~~~~e~ySaF~~~~~~~~t~-L~~~Lr~~gi~~viv~Gvatd~CV~---~Ta~d 233 (285)
|||++++++|.+.+++. ++.|. +||+|+......+|+ |..+|+++||++|+|+|++|++||. +|+++
T Consensus 101 t~g~ei~~~L~p~~~~~~v~v~~K~------~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTard 174 (239)
T PLN02743 101 TGEENLVPALQWLENDPNVTLRRKD------CIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALS 174 (239)
T ss_pred CcccccchhhCCCCCCceEEEEecC------ccccccccccccCccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHHH
Confidence 99999999998876664 45677 799998332222345 8999999999999999999999998 99999
Q ss_pred HHhCCC-----eEEEeCCCCccCCHHH-----------------HHHHHHHHHHcCCEEEeH
Q psy1561 234 AITIGY-----RTILIEDCCRGVDMDD-----------------MERTRNTILENYGSCVQS 273 (285)
Q Consensus 234 a~~~G~-----~v~Vv~Da~~~~~~~~-----------------~~~al~~m~~~g~~vits 273 (285)
|.++|| +|+|++|||++++.+. |..++..|...|++|++.
T Consensus 175 A~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 236 (239)
T PLN02743 175 ARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSK 236 (239)
T ss_pred HHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeee
Confidence 999999 8999999999998654 345788888899999874
No 13
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=1.5e-32 Score=231.01 Aligned_cols=135 Identities=37% Similarity=0.726 Sum_probs=121.6
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
.+++++++|++.+| ..+||++++.|+++..++.. ..||.||..|
T Consensus 24 ~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 69 (161)
T cd00431 24 ELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAE----------------------------------LLWPPHCVKG 69 (161)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeecCCCccccc----------------------------------ccCcccccCC
Confidence 38888889888775 46999999999877544311 1589999999
Q ss_pred CCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe
Q psy1561 161 SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR 240 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~ 240 (285)
|+|++++++|.+.+++.++.|. +||+|+ +|+|.++|+++|+++|+|+|++|++||.+|+++|+++||+
T Consensus 70 s~~~~~~~~l~~~~~~~~i~K~------~~saf~------~t~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~ 137 (161)
T cd00431 70 TEGAELVPELAPLPDDLVIEKT------RYSAFY------GTDLDELLRERGIDTLVVCGIATDICVLATARDALDLGYR 137 (161)
T ss_pred CchhhcchhhCCCCCCEEEecC------CcCCcc------CCCHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCE
Confidence 9999999999888888999998 699997 8999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCHHHHHHHHHHH
Q psy1561 241 TILIEDCCRGVDMDDMERTRNTI 263 (285)
Q Consensus 241 v~Vv~Da~~~~~~~~~~~al~~m 263 (285)
|+|++|||++.+++.|+.+++.|
T Consensus 138 v~vi~Da~~s~~~~~~~~al~~~ 160 (161)
T cd00431 138 VIVVEDACATRDEEDHEAALERL 160 (161)
T ss_pred EEEehhhcccCChHHHHHHHHHc
Confidence 99999999999999999999876
No 14
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=99.97 E-value=1.7e-31 Score=225.17 Aligned_cols=106 Identities=24% Similarity=0.338 Sum_probs=100.6
Q ss_pred cccccccc-cccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEE
Q psy1561 165 ELHKDLKV-VDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTIL 243 (285)
Q Consensus 165 el~~eL~~-~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~V 243 (285)
+++++|.+ .+++.++.|. +||+|. +|+|..+|+++|+++|+|||++|++||.+|+++|.++||+|+|
T Consensus 51 ~~~~~l~~~~~~~~vi~K~------~~saf~------~t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v 118 (157)
T cd01012 51 PTVPELREVFPDAPVIEKT------SFSCWE------DEAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFV 118 (157)
T ss_pred CchHHHHhhCCCCCceecc------cccCcC------CHHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEE
Confidence 68889988 7888899998 699997 9999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHhhc
Q psy1561 244 IEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHEN 282 (285)
Q Consensus 244 v~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l~~ 282 (285)
++|||++++++.|+.+|+.|...|+.++++++++..|.+
T Consensus 119 ~~Da~as~~~~~h~~al~~~~~~~~~v~~~~~~~~~l~~ 157 (157)
T cd01012 119 VADACGSRSKEDHELALARMRQAGAVLTTSESVLFELQR 157 (157)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHCCCEEeeHHHHHHHHcC
Confidence 999999999999999999999999999999999998853
No 15
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=99.97 E-value=2.3e-31 Score=223.96 Aligned_cols=122 Identities=21% Similarity=0.376 Sum_probs=106.9
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
.++++|++|++.++ ..+|++|+++|+... | |.+|
T Consensus 23 ~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~------------------------------------------~--~~~g 58 (155)
T cd01014 23 AALENIAALIAAARAAGIPVIHVRHIDDEGG------------------------------------------S--FAPG 58 (155)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEeccCCCC------------------------------------------C--CCCC
Confidence 48889999998764 469999998775431 0 3579
Q ss_pred CCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe
Q psy1561 161 SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR 240 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~ 240 (285)
|+|++++++|.+.+.+.++.|+ +||+|+ +|+|.++|+++|+++|+|||++||+||.+|+++|.++||+
T Consensus 59 t~g~~l~~~l~~~~~d~v~~K~------~~saf~------~t~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~ 126 (155)
T cd01014 59 SEGWEIHPELAPLEGETVIEKT------VPNAFY------GTDLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYD 126 (155)
T ss_pred CCccccchhhcCCCCCEEEeCC------CCCCcC------CCCHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCc
Confidence 9999999999987788899998 699997 8999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCHHHHHHHH
Q psy1561 241 TILIEDCCRGVDMDDMERTR 260 (285)
Q Consensus 241 v~Vv~Da~~~~~~~~~~~al 260 (285)
|+|++|||++++++.|+.++
T Consensus 127 v~vi~Da~~s~~~~~~~~~~ 146 (155)
T cd01014 127 VTVVADACATFDLPDHGGVL 146 (155)
T ss_pred EEEecccccCCCcccCCcee
Confidence 99999999999987776543
No 16
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=3.9e-23 Score=174.28 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=128.4
Q ss_pred hhHHHHHHHHhhcC--CCeEEEEeccCCCCCCchhhccccccCCCCCCCCCCCCCccceeeecCCCCcccccCCccccCC
Q psy1561 83 VVIEPINKLLDTVN--FNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160 (285)
Q Consensus 83 ~iv~~I~~L~~~~~--~~~Ii~T~D~Hp~~h~sF~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~WP~Hcv~G 160 (285)
.+|.+|.+|...+. ..+|+||..-+..+... .. .--.-|.+-.-.+
T Consensus 55 ~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~d-------------------------ra-------LL~d~WGpgl~~~ 102 (218)
T COG1535 55 QLIANIAKLRIWCKQAGIPVVYTAQPGEQSPED-------------------------RA-------LLKDFWGPGLTAS 102 (218)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHH-------------------------HH-------HHHHhcCCCCCCC
Confidence 37788888888763 46999998665332100 00 0012355544455
Q ss_pred CCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe
Q psy1561 161 SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR 240 (285)
Q Consensus 161 t~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~ 240 (285)
-....++.+|.|...|.++.|. +||||+ .+.|.+.||+.|++.+||+|+-+++|+..|+.||+.++++
T Consensus 103 p~~~~vv~~l~P~~~D~vL~kw------rYsAF~------~s~Llq~lr~~grdQLIItGVyaHigcl~TA~dAFm~diq 170 (218)
T COG1535 103 PEQQKVVDELAPGADDTVLTKW------RYSAFH------RSPLLQMLREKGRDQLIITGVYAHIGCLTTATDAFMRDIQ 170 (218)
T ss_pred hhhhhhHHhcCCCCCceEEeee------ehhhhh------cChHHHHHHHcCCCcEEEeehhhhhhhhhhHHHHHHhcCc
Confidence 4556788899999999999998 899997 9999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHhh
Q psy1561 241 TILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE 281 (285)
Q Consensus 241 v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l~ 281 (285)
++++.|+.+.++.+.|..+|++....-+.|+++++++..+.
T Consensus 171 pfmV~DAlaDfs~~~H~msLky~A~r~a~vv~Teell~~~~ 211 (218)
T COG1535 171 PFMVADALADFSEEEHRMSLKYVAGRCARVVMTEELLCALA 211 (218)
T ss_pred ceeehhhhhhccHHHHHHHHHHHhcceeEEeeHHHHhhccc
Confidence 99999999999999999999999998889999999998874
No 17
>KOG4044|consensus
Probab=99.56 E-value=4.7e-14 Score=117.94 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=82.9
Q ss_pred eecccCCCCCCCccccccccccCCCccHHHHHHh-CCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHH
Q psy1561 177 IKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEA-KKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDD 255 (285)
Q Consensus 177 ~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~-~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~ 255 (285)
..+.|. .||++. ++....|++ .|.++|+++|+.|+.||.+|+.|++++|.+|+|+.|||++.+...
T Consensus 79 ~~~~KT------~FSM~~-------p~v~~s~~~i~~~k~VvL~GiEthvCv~qTa~dLl~rgl~VhvVaDacSSRs~~D 145 (201)
T KOG4044|consen 79 LNLSKT------KFSMVL-------PPVEDSLKDIFGGKTVVLFGIETHVCVLQTALDLLERGLNVHVVADACSSRSNQD 145 (201)
T ss_pred cccccc------ceeeeC-------chHHHHHHhccCCCeEEEEecchheehHHHHHHHHhCCceEEEEeehhccccchh
Confidence 347776 699994 566666765 677899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHcCCEEEeHHHHHHHhhcc
Q psy1561 256 MERTRNTILENYGSCVQSDEVLGQHENT 283 (285)
Q Consensus 256 ~~~al~~m~~~g~~vits~e~i~~l~~~ 283 (285)
..-|+++|+..|+.+.||+.+|-.|-|+
T Consensus 146 R~~Al~r~rq~G~~lstsEsvI~~Lvgd 173 (201)
T KOG4044|consen 146 RDLALERMRQAGANLSTSESVILNLVGD 173 (201)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHhcC
Confidence 8999999999999999999998777554
No 18
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.47 E-value=0.011 Score=35.58 Aligned_cols=25 Identities=52% Similarity=0.693 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhh
Q psy1561 52 ELEETFAVFDLNQDGLIDREEFAFC 76 (285)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (285)
+++++++.|++|+||.|+.+||..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~ 25 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEM 25 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHH
Confidence 3678999999999999999999754
No 19
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=93.46 E-value=0.065 Score=31.04 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCcchhhhhhh
Q psy1561 53 LEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
++++++.++.|+||.|+.+||..
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 46789999999999999999863
No 20
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=91.05 E-value=0.2 Score=30.08 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 52 ELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
+++++|+.+++|++|.|+.+||..+.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 36789999999999999999987544
No 21
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=87.44 E-value=0.6 Score=31.40 Aligned_cols=29 Identities=31% Similarity=0.545 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
.++.+..+++.++.|++|.|+.+||..++
T Consensus 23 s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 23 SEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp CHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 56779999999999999999999998665
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=76.70 E-value=1.9 Score=29.92 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhhccch
Q psy1561 52 ELEETFAVFDLNQDGLIDREEFAFCWNRWI 81 (285)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi 81 (285)
+++++|+.++.|++|.|+.+||..+.+...
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 368899999999999999999987776665
No 23
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=72.81 E-value=2.1 Score=29.35 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
.++.+..+|+--+++++|.|+++||.-.+
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 67889999999999999999999987444
No 24
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=71.06 E-value=3.3 Score=22.40 Aligned_cols=24 Identities=50% Similarity=0.707 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhh
Q psy1561 53 LEETFAVFDLNQDGLIDREEFAFC 76 (285)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~ 76 (285)
++++++.++.|++|.++.+||..+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~ 25 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDL 25 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHH
Confidence 567899999999999999887633
No 25
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.01 E-value=17 Score=32.93 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=48.1
Q ss_pred HhCCccEEEEEcccCchhHHHHHHH-----HHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEE
Q psy1561 209 EAKKVTDVYVCGLAYDVCVGASAID-----AITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSC 270 (285)
Q Consensus 209 r~~gi~~viv~Gvatd~CV~~Ta~d-----a~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~v 270 (285)
+++||. ++.-|-..++|+.+...+ +.++||+++=++|++-+++.+.....++.+...|-.+
T Consensus 51 ~~~~V~-v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 51 KDYGIK-VYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHcCCe-EeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 356774 677777888888887776 5578999999999999999998888888887665443
No 26
>KOG0044|consensus
Probab=68.97 E-value=3.2 Score=36.32 Aligned_cols=50 Identities=32% Similarity=0.440 Sum_probs=37.3
Q ss_pred cccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 19 ~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
.|.+...++.. ++++.|.+.+ ++..++++|+.|+.|+||.++.+||...|
T Consensus 41 ~G~~~~~~F~~---i~~~~fp~gd------~~~y~~~vF~~fD~~~dg~i~F~Efi~al 90 (193)
T KOG0044|consen 41 SGRLTLEEFRE---IYASFFPDGD------ASKYAELVFRTFDKNKDGTIDFLEFICAL 90 (193)
T ss_pred CCccCHHHHHH---HHHHHCCCCC------HHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence 46666555443 6667776433 67888999999999999999999975444
No 27
>KOG1250|consensus
Probab=68.62 E-value=12 Score=36.33 Aligned_cols=106 Identities=19% Similarity=0.090 Sum_probs=72.0
Q ss_pred cCCCCCccccccccccccceecccCCCCCCCccccccccccCCCccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhC
Q psy1561 158 VQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITI 237 (285)
Q Consensus 158 v~Gt~G~el~~eL~~~~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~ 237 (285)
=+||-|-||...+....+.+++.=|. .+.. -+....|++-+. ++=|.|+.|.-|-. ...++..
T Consensus 200 GqgTig~EIl~ql~~~~~AI~vpVGG-------GGLi-------aGIat~vk~~~p-~vkIIGVEt~~a~~--f~~sl~~ 262 (457)
T KOG1250|consen 200 GQGTIGLEILEQLKEPDGAIVVPVGG-------GGLI-------AGIATGVKRVGP-HVKIIGVETEGAHS--FNASLKA 262 (457)
T ss_pred CcchHHHHHHHhhcCCCCeEEEecCC-------chhH-------HHHHHHHHHhCC-CCceEEEeecCcHH--HHHHHhc
Confidence 35889999999998776677766651 2321 344567777776 79999999999954 4457788
Q ss_pred CCeEEEeCCCCccC---CHHHHHHHHHHHHHc--CCEEEeHHHHHHHh
Q psy1561 238 GYRTILIEDCCRGV---DMDDMERTRNTILEN--YGSCVQSDEVLGQH 280 (285)
Q Consensus 238 G~~v~Vv~Da~~~~---~~~~~~~al~~m~~~--g~~vits~e~i~~l 280 (285)
|-.|++..=.+-+- -+...+.+++.++.. ...+++.+++...+
T Consensus 263 g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI 310 (457)
T KOG1250|consen 263 GKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAI 310 (457)
T ss_pred CCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHH
Confidence 88887755333221 144567788888764 44577778877654
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=68.41 E-value=4.6 Score=30.73 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhh
Q psy1561 51 NELEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
++++++++.++.|+||.|+.+||..
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~ 71 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWE 71 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 7899999999999999999999953
No 29
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=66.29 E-value=6.3 Score=27.24 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
..+.++.+++.++.|+||.|+.+||..
T Consensus 38 ~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 38 SDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 556778889999999999999999863
No 30
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=65.68 E-value=5.4 Score=30.66 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
..+.+.++.+..++|+||.||.+||..
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~ 72 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFS 72 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 456788999999999999999999863
No 31
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=62.92 E-value=7.7 Score=26.53 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
..+.+.++++.++.+++|.++.+||..+|
T Consensus 31 ~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 31 PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 45778999999999999999999997555
No 32
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=61.96 E-value=8.2 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhhccchh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~ 82 (285)
..+.++++++.++.|++|.|+.+||..++..+.+
T Consensus 49 ~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 49 DPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred CHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 5678999999999999999999999866655443
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=58.62 E-value=9.1 Score=29.04 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
..+.+.++++.++.|+||.+|.+||.
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 55689999999999999999999996
No 34
>PRK05443 polyphosphate kinase; Provisional
Probab=58.46 E-value=61 Score=33.90 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=61.0
Q ss_pred cceecccCCCCCCCccccccccccCCCccHHHHHHhCCcc------EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCC
Q psy1561 175 NAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 248 (285)
Q Consensus 175 ~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~------~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~ 248 (285)
.|+.+.=+ |..| ..+.+.|++...| .+.+-=++.+-=+..+..+|.++|-+|+|+-+.-
T Consensus 339 ~DiLLh~P-------Y~SF--------~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~k 403 (691)
T PRK05443 339 KDILLHHP-------YESF--------DPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELK 403 (691)
T ss_pred CCEEEECC-------ccCc--------hHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccC
Confidence 45665544 6777 3455677764442 3445555667788899999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEE
Q psy1561 249 RGVDMDDMERTRNTILENYGSCV 271 (285)
Q Consensus 249 ~~~~~~~~~~al~~m~~~g~~vi 271 (285)
+.++.+..-.-.+.|..+|+.|+
T Consensus 404 arfde~~n~~~~~~L~~aGv~V~ 426 (691)
T PRK05443 404 ARFDEEANIRWARRLEEAGVHVV 426 (691)
T ss_pred ccccHHHHHHHHHHHHHcCCEEE
Confidence 98888766666788999999884
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=58.18 E-value=18 Score=28.88 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=26.9
Q ss_pred chhchHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 46 YALKDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
+..-...+.-+|..++.|+||.|+.+|+..+.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 34567788999999999999999999987543
No 36
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=57.54 E-value=10 Score=28.67 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
..+++.++++.++.|++|.++.+||..
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~ 75 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVT 75 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHH
Confidence 678999999999999999999999963
No 37
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=57.50 E-value=20 Score=32.56 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred HHHHhCCccEEEEEcccCchhHHHHHHHH-----HhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 206 KQLEAKKVTDVYVCGLAYDVCVGASAIDA-----ITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 206 ~~Lr~~gi~~viv~Gvatd~CV~~Ta~da-----~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
+..+++|| .++.-|-..++|+.+...+. .++||..+=++|++-.++.+.....++.++..|-.|++
T Consensus 61 ~l~~~~gV-~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 61 DLAHSHGV-YVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHCTT--EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHcCC-eEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 34456788 48999999999888666554 47899999999999999999988889999888877764
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=56.76 E-value=10 Score=28.38 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHH-hcCCC-cchhhhhhhhhc
Q psy1561 49 KDNELEETFAVFD-LNQDG-LIDREEFAFCWN 78 (285)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~ 78 (285)
+.+.+++.|+.|+ ++++| .|+.+|+..+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~ 38 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQ 38 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHH
Confidence 6688999999997 99999 599999887763
No 39
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=52.99 E-value=57 Score=30.55 Aligned_cols=67 Identities=12% Similarity=-0.019 Sum_probs=43.9
Q ss_pred HHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccC-C-HHHHHHHHHHHHHcCCEEEe
Q psy1561 206 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGV-D-MDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 206 ~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~-~-~~~~~~al~~m~~~g~~vit 272 (285)
...+++|+.+|+-+|-++..=..++|.-+..+|++++++.+.-.+. + +..-...+..|+..|++|+.
T Consensus 60 ~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~ 128 (337)
T PRK12390 60 PDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRL 128 (337)
T ss_pred HHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEE
Confidence 3344689999998876665566778888889999999986542221 1 11122234557778887655
No 40
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=52.53 E-value=14 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
..+.++++++.++.|++|.|+.+||..++
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 56789999999999999999999996433
No 41
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=50.86 E-value=71 Score=33.33 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=51.8
Q ss_pred cHHHHHHhCCcc------EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEE
Q psy1561 203 SLAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCV 271 (285)
Q Consensus 203 ~L~~~Lr~~gi~------~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vi 271 (285)
.+.+.|++...| .+.+-=++.+-=+.....+|.++|-+|+|+-+.-+.++.+..-.-.+.|..+|+.|+
T Consensus 343 ~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~vi 417 (672)
T TIGR03705 343 PVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVV 417 (672)
T ss_pred HHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEE
Confidence 355677765432 334444455667779999999999999999999999998766555568999998875
No 42
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=49.73 E-value=30 Score=29.39 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=37.7
Q ss_pred cHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeC
Q psy1561 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 245 (285)
Q Consensus 203 ~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~ 245 (285)
.+.++|.+.|+..+..-|...|=|+.+-+..+...|++|+|++
T Consensus 90 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 132 (169)
T PF02739_consen 90 YIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFEVIIVS 132 (169)
T ss_dssp HHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCEEEEE-
T ss_pred HHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCEEEEEc
Confidence 4567888899999999999999999999999999999999986
No 43
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=48.75 E-value=68 Score=30.09 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=43.8
Q ss_pred HHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHH--HHHHHHHHHHHcCCEEEeH
Q psy1561 208 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD--DMERTRNTILENYGSCVQS 273 (285)
Q Consensus 208 Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~--~~~~al~~m~~~g~~vits 273 (285)
.+++|+++|+-+|-++..=-.++|.-+..+|++++++.+...+++.. .....+..|+..|++|+..
T Consensus 61 a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v 128 (337)
T TIGR01274 61 AQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD 128 (337)
T ss_pred HHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence 45689988888765555555677888888999998887654332221 1234456677888876543
No 44
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=48.08 E-value=17 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
..+++.++++.++.|+||.|+.+||.
T Consensus 49 ~~~~v~~~i~~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 49 EQEVVDKVMETLDSDGDGECDFQEFM 74 (88)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 56779999999999999999999985
No 45
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=46.97 E-value=19 Score=26.95 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
..+.++++++.++.|++|.|+.+||.
T Consensus 50 s~~~v~~i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 50 DADAVDKIMKELDENGDGEVDFQEFV 75 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence 56789999999999999999999985
No 46
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=45.94 E-value=19 Score=28.79 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
.+..+.++++.++.|+||.|+.+||-.|.
T Consensus 78 ~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 78 NEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45678899999999999999999998766
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=45.93 E-value=16 Score=27.54 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
....+.++++.++.|+||.|+.+||.
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 34678999999999999999999995
No 48
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=45.59 E-value=18 Score=27.04 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
..+++.++++.++.|++|.|+.+||.
T Consensus 49 ~~~~v~~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 49 NQKAIDKIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 37889999999999999999999985
No 49
>KOG0037|consensus
Probab=45.55 E-value=17 Score=32.47 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhhcc
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNR 79 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (285)
..+-++-|...|+++..|+++.+||..+||.
T Consensus 92 s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 92 SIETCRLMISMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence 4578899999999999999999999999965
No 50
>KOG0027|consensus
Probab=45.47 E-value=19 Score=29.60 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhhcc
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNR 79 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (285)
..+.+++.|++|++|++|.++.+|+..+...
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 3568999999999999999999998755433
No 51
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=42.46 E-value=24 Score=26.60 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFC 76 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (285)
..+.++++++.++.+.+|.|+.+||..+
T Consensus 42 ~~~ev~~i~~~~d~~~~g~I~~~eF~~~ 69 (96)
T smart00027 42 PQTLLAKIWNLADIDNDGELDKDEFALA 69 (96)
T ss_pred CHHHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 4577899999999999999999999633
No 52
>KOG1371|consensus
Probab=42.18 E-value=50 Score=31.41 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=35.0
Q ss_pred ccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHH
Q psy1561 213 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD 254 (285)
Q Consensus 213 i~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~ 254 (285)
..+|.|+|-+ -+|=.+|++.++++||.|+++.+-+.++.+.
T Consensus 2 ~~~VLVtGga-GyiGsht~l~L~~~gy~v~~vDNl~n~~~~s 42 (343)
T KOG1371|consen 2 GKHVLVTGGA-GYIGSHTVLALLKRGYGVVIVDNLNNSYLES 42 (343)
T ss_pred CcEEEEecCC-cceehHHHHHHHhCCCcEEEEecccccchhH
Confidence 3578888865 5899999999999999999999999888543
No 53
>PTZ00184 calmodulin; Provisional
Probab=41.66 E-value=18 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhhccch
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNRWI 81 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi 81 (285)
..+.+.++++.++.|++|.++.+||..++..+.
T Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 77 (149)
T PTZ00184 45 TEAELQDMINEVDADGNGTIDFPEFLTLMARKM 77 (149)
T ss_pred CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc
Confidence 356889999999999999999999987765543
No 54
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=39.30 E-value=26 Score=26.42 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhhcc
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNR 79 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (285)
..+.+.++|+.|+++++|.++.+|+..++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 4567888999999999999999999877644
No 55
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=37.29 E-value=2.2e+02 Score=23.61 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=48.2
Q ss_pred EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCH--HHHHHHHHHHHHcCCEEEeHHHHHHHhh
Q psy1561 215 DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDM--DDMERTRNTILENYGSCVQSDEVLGQHE 281 (285)
Q Consensus 215 ~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~--~~~~~al~~m~~~g~~vits~e~i~~l~ 281 (285)
+|.++|-.-+-.+.+-+..+...|..++++...--.+++ +..+.+.+.+...|..+.-++++-+.++
T Consensus 4 ~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~ 72 (158)
T PF00185_consen 4 KIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALK 72 (158)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcC
Confidence 688889743667777788888999999998877755554 5566777777777876554455655554
No 56
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=37.11 E-value=33 Score=21.91 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
..+.+.++++.++.|++|.|+.+||..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 34 SEEEIDEMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred CHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 566778899999999999999998853
No 57
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=36.63 E-value=2.2e+02 Score=27.23 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=43.9
Q ss_pred HHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCc----cCCHHHHHHHHHHHHHcCCEEEeH
Q psy1561 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR----GVDMDDMERTRNTILENYGSCVQS 273 (285)
Q Consensus 204 L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~----~~~~~~~~~al~~m~~~g~~vits 273 (285)
|.+.|+...-++|+|+|- -.+-...+..+..+|.+|+++...-. .++++..+...+.|+..|+.+...
T Consensus 140 l~~~l~~~~~~~vvVvGg--G~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~ 211 (444)
T PRK09564 140 LKELLKDEEIKNIVIIGA--GFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLN 211 (444)
T ss_pred HHHHHhhcCCCEEEEECC--CHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcC
Confidence 444444434578999983 33344456666778999999864331 356666677777888888876643
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=35.67 E-value=42 Score=24.62 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHh--cCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDL--NQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (285)
..+.++++|..|++ +++|.|+.+||..++
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l 36 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELL 36 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHH
Confidence 34567888999999 899999999987665
No 59
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=35.28 E-value=83 Score=29.68 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=34.5
Q ss_pred CCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCc
Q psy1561 211 KKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR 249 (285)
Q Consensus 211 ~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~ 249 (285)
.|+++++=+|-.-+.-+++||.-|..+|++.+++-+.-.
T Consensus 62 ~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~ 100 (323)
T COG2515 62 KGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE 100 (323)
T ss_pred cCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc
Confidence 699999999999999999999999999999777655444
No 60
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=34.54 E-value=2.6e+02 Score=27.06 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCC---ccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC---RGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 204 L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~---~~~~~~~~~~al~~m~~~g~~vit 272 (285)
|.+.|.....++++|+| ....-+. .|..+.++|.+|+++.-.- ...+++..+...+.|.+.|+.+..
T Consensus 139 l~~~l~~~~~~~vvViG-gG~ig~E-~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~ 208 (438)
T PRK13512 139 IDQFIKANQVDKALVVG-AGYISLE-VLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208 (438)
T ss_pred HHHHHhhcCCCEEEEEC-CCHHHHH-HHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEE
Confidence 34444444567999999 4444333 4556677899999997432 234556666667778888887654
No 61
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=33.50 E-value=41 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHh-cC-CCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDL-NQ-DGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 77 (285)
+...+.+.|..|++ ++ +|.|+.+|+..++
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l 36 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLM 36 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHH
Confidence 46778999999997 87 6999999987655
No 62
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=33.16 E-value=38 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHH-hcCCC-cchhhhhhhhhcc
Q psy1561 49 KDNELEETFAVFD-LNQDG-LIDREEFAFCWNR 79 (285)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 79 (285)
+...++++|+.|+ ++++| .|+.+||..+...
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4567889999997 89999 5999998766643
No 63
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=33.15 E-value=1.3e+02 Score=27.58 Aligned_cols=63 Identities=13% Similarity=-0.022 Sum_probs=36.8
Q ss_pred HhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCC--HHHHHHHHHHHHHcCCEEE
Q psy1561 209 EAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVD--MDDMERTRNTILENYGSCV 271 (285)
Q Consensus 209 r~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~--~~~~~~al~~m~~~g~~vi 271 (285)
+++|+++|+-+|=++..=..+.+.-+..+|++++++.+...+.. +......+..|+..|++|+
T Consensus 48 ~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~ 112 (307)
T cd06449 48 LAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVR 112 (307)
T ss_pred HHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEE
Confidence 35778888777643433444666677788888888877654421 0011122444667777765
No 64
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=32.87 E-value=1.7e+02 Score=28.00 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 227 VGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 227 V~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
+.....++.++|-+|.++.|+... ...++.|+..|+++..
T Consensus 65 i~~aL~~aa~rGV~Vril~D~~~~------~~~~~~L~~~Gv~v~~ 104 (369)
T PHA03003 65 ILDKLKEAAESGVKVTILVDEQSG------DKDEEELQSSNINYIK 104 (369)
T ss_pred HHHHHHHhccCCCeEEEEecCCCC------CccHHHHHHcCCEEEE
Confidence 456666667889999999998642 3345778888988754
No 65
>PF14658 EF-hand_9: EF-hand domain
Probab=32.38 E-value=38 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHhcCC-Ccchhhhhhhhhccch
Q psy1561 49 KDNELEETFAVFDLNQD-GLIDREEFAFCWNRWI 81 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wi 81 (285)
.+.+++.+.+-++-++. |.|+.+.|.++...||
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 67789999999998877 9999999998887776
No 66
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=31.77 E-value=2.7e+02 Score=27.16 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=42.3
Q ss_pred EEEEEcc-----cCchhHHHHHHHH-HhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHhh
Q psy1561 215 DVYVCGL-----AYDVCVGASAIDA-ITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE 281 (285)
Q Consensus 215 ~viv~Gv-----atd~CV~~Ta~da-~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l~ 281 (285)
+|.++|. .-..+|..+...+ ...|.+|+++.--.-...++..+.+.+.....|+.+.-++++.+.++
T Consensus 189 kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~ 261 (395)
T PRK07200 189 KIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFK 261 (395)
T ss_pred EEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhC
Confidence 7888885 3335676665554 67799999998754444555555555556666776654555555443
No 67
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=30.84 E-value=59 Score=31.12 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=49.0
Q ss_pred HHHHHHhCCcc------EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEE
Q psy1561 204 LAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCV 271 (285)
Q Consensus 204 L~~~Lr~~gi~------~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vi 271 (285)
+.++|++.-.| .+.+-=++.+-=+-.....|.+.|.+|+|+-..-+-+|++..-.--+.|..+|+.|+
T Consensus 23 vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~Ni~Wa~~Le~aGv~Vi 96 (352)
T PF13090_consen 23 VVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLVELKARFDEENNIHWAKRLEEAGVHVI 96 (352)
T ss_dssp HHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCCCCCCHHHHHCT-EEE
T ss_pred HHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEEEEeccccHHHHhHHHhhHHhcCeEEE
Confidence 55588764332 456667888989999999999999999999999999998753222356888999876
No 68
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=30.58 E-value=2.1e+02 Score=29.81 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=58.9
Q ss_pred ccceecccCCCCCCCccccccccccCCCccHHHHHHhCCcc------EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCC
Q psy1561 174 DNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDC 247 (285)
Q Consensus 174 ~~~~vi~K~~~~~~e~ySaF~~~~~~~~t~L~~~Lr~~gi~------~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da 247 (285)
++|+++.-. |..|. ...++|+..-.| +..+-=++.|-=+-....+|.+.|.+|+|+-..
T Consensus 342 e~DiLlhHP-------YeSF~--------~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVEL 406 (696)
T COG0855 342 EGDILLHHP-------YESFE--------PVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVEL 406 (696)
T ss_pred hcCeEEECc-------hhhhH--------HHHHHHHHhhcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEEE
Confidence 346666654 78882 367777753222 233444556667788899999999999999999
Q ss_pred CccCCHHHHHHHHHHHHHcCCEEE
Q psy1561 248 CRGVDMDDMERTRNTILENYGSCV 271 (285)
Q Consensus 248 ~~~~~~~~~~~al~~m~~~g~~vi 271 (285)
-+-+|++..-.=-+.|..+|+.|+
T Consensus 407 kARFDEE~NI~WAk~LE~AGvhVv 430 (696)
T COG0855 407 KARFDEEANIHWAKRLERAGVHVV 430 (696)
T ss_pred hhhcChhhhhHHHHHHHhCCcEEE
Confidence 999998754333466888898876
No 69
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=30.15 E-value=1.3e+02 Score=26.36 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=37.8
Q ss_pred cHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhC-CCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITI-GYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 203 ~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~-G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
.|...|.+.| .++|.|++.- |-....+.+++. |..+.|+..+...+-|..+..-.+.+...++-++|
T Consensus 65 ~l~~~l~~~g--~~vvSGlA~G-iD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliS 132 (212)
T PF02481_consen 65 KLARELAKAG--IVVVSGLAKG-IDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLIS 132 (212)
T ss_dssp HHHHHHHHHT---EEEE---TT-HHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhhCC--EEEEcCCCCC-HHHHHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEe
Confidence 4556666554 5999999976 445556666666 45566665666555567777777777766777776
No 70
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=29.77 E-value=2.8e+02 Score=26.27 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=40.8
Q ss_pred EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHhh
Q psy1561 215 DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHE 281 (285)
Q Consensus 215 ~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l~ 281 (285)
+|-++|-..+.-+.+.+..+...|++++++.--.--.+++..+.+.+.....|+.+.-++++.+.++
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~ 224 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVK 224 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhC
Confidence 7888886534333444555556799999988644444444555555556667776655555555443
No 71
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=29.26 E-value=27 Score=31.10 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHHHHhCCccEEEEEcccCchhH-----HHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHH
Q psy1561 204 LAKQLEAKKVTDVYVCGLAYDVCV-----GASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLG 278 (285)
Q Consensus 204 L~~~Lr~~gi~~viv~Gvatd~CV-----~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~ 278 (285)
+...|+++|+++++++|--.--=. ..++...+.+ ++. ....-+........+.+...|..|+.+.+++.
T Consensus 4 ~i~~lk~~gv~~vvmaG~v~rp~~~~~~~D~~~~~~l~~-----~~~-~l~~gDd~lL~av~~~le~~G~~vv~~~~~~p 77 (214)
T PF06230_consen 4 IIKFLKREGVTRVVMAGKVKRPIFSDLRPDWRALKLLPR-----LLK-ALDRGDDALLRAVIDELEKEGFKVVGAHEYLP 77 (214)
T ss_pred HHHHHHHcCCCEEEEeecccCccccccCCCHHHHHHHHH-----HHH-HHhcCCHHHHHHHHHHHHHCCCEEEcHHHhhH
Confidence 567899999999999997632111 1111111110 000 01122333445567788899999999999988
Q ss_pred Hh
Q psy1561 279 QH 280 (285)
Q Consensus 279 ~l 280 (285)
.|
T Consensus 78 ~L 79 (214)
T PF06230_consen 78 DL 79 (214)
T ss_pred Hh
Confidence 75
No 72
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=28.40 E-value=2.6e+02 Score=23.34 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=48.7
Q ss_pred CccHHHHHHhCCccEEEEEccc--CchhHHHHHHHHHhCCCeEEEeC-CCCccCCHHHHHHHHHHHHHcCC
Q psy1561 201 GTSLAKQLEAKKVTDVYVCGLA--YDVCVGASAIDAITIGYRTILIE-DCCRGVDMDDMERTRNTILENYG 268 (285)
Q Consensus 201 ~t~L~~~Lr~~gi~~viv~Gva--td~CV~~Ta~da~~~G~~v~Vv~-Da~~~~~~~~~~~al~~m~~~g~ 268 (285)
+..|.++|-.++..+|+++|-. .+.........+...|.+|.++. |. .+++...+.++.+...+.
T Consensus 13 g~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv---~d~~~v~~~~~~~~~~~~ 80 (181)
T PF08659_consen 13 GQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDV---TDPEAVAAALAQLRQRFG 80 (181)
T ss_dssp HHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--T---TSHHHHHHHHHTSHTTSS
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCc---cCHHHHHHHHHHHHhccC
Confidence 5678899999999999999998 46678888888888999988876 43 346677777777766553
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=28.10 E-value=1.4e+02 Score=27.79 Aligned_cols=64 Identities=9% Similarity=-0.047 Sum_probs=38.1
Q ss_pred HhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHH--HHHHHHHHHHHcCCEEEe
Q psy1561 209 EAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD--DMERTRNTILENYGSCVQ 272 (285)
Q Consensus 209 r~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~--~~~~al~~m~~~g~~vit 272 (285)
+++|.++|+-+|-++..=-.+.|.-+..+|++++++.+...+-... .....+..|+..|++|+.
T Consensus 60 ~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~ 125 (331)
T PRK03910 60 LAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHV 125 (331)
T ss_pred HHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEE
Confidence 3578888886664333334456666778899999888776543211 111233456677777653
No 74
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=28.01 E-value=1.5e+02 Score=27.62 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=30.5
Q ss_pred HHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCC
Q psy1561 208 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 248 (285)
Q Consensus 208 Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~ 248 (285)
.+++|.++|+.+|-++..=..+.|.-+..+|++++++....
T Consensus 65 a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~ 105 (329)
T PRK14045 65 ALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGK 105 (329)
T ss_pred HHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 34578888887666666666677888888999988887743
No 75
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=27.49 E-value=50 Score=28.03 Aligned_cols=26 Identities=42% Similarity=0.744 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
..+.++..|++|+++++|.|+..|+.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~ 115 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELR 115 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHH
Confidence 58999999999999999999988876
No 76
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=27.43 E-value=4.2e+02 Score=23.38 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=43.8
Q ss_pred cHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhC-CCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITI-GYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 203 ~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~-G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
.|...|.++|+ ++|.|.+.- |-....+.|++. |..+.|+..+...+-|..+..-.+.+...|+-++|
T Consensus 65 ~l~~~l~~~g~--~IVSG~A~G-iD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliS 132 (220)
T TIGR00732 65 KLAEELAKNGV--TIVSGLALG-IDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLS 132 (220)
T ss_pred HHHHHHHhCCC--EEEcCchhh-HHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEE
Confidence 45566666655 689998864 333344445554 67777877777776677777777777777755554
No 77
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=27.00 E-value=60 Score=31.55 Aligned_cols=26 Identities=38% Similarity=0.721 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
....++.+|+.+++|+||.++.+||.
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 45666777777777777777777763
No 78
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=26.65 E-value=2.1e+02 Score=27.03 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=49.5
Q ss_pred ccHHHHHHhCCccEEEEEcccCchh-HHHHHHHHH-hCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCE
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVC-VGASAIDAI-TIGYRTILIEDCCRGVDMDDMERTRNTILENYGS 269 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~C-V~~Ta~da~-~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~ 269 (285)
..|.+.|+..| +-++|+|-...-. +...+.+++ +.|.++.+..+....-+.+..+++.+.++..++.
T Consensus 12 ~~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 80 (366)
T PF00465_consen 12 EELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGAD 80 (366)
T ss_dssp GGHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC
Confidence 56778888888 8888888755544 667777765 6788888888776666677888888888877654
No 79
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=26.58 E-value=47 Score=28.20 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
..+.++.|++.++.++||.++.+||...|
T Consensus 126 ~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 126 SDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 67889999999999999999999997544
No 80
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.43 E-value=2.4e+02 Score=19.98 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=37.0
Q ss_pred EEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCc---cCCHHHHHHHHHHHHHcCCEEEeH
Q psy1561 216 VYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR---GVDMDDMERTRNTILENYGSCVQS 273 (285)
Q Consensus 216 viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~---~~~~~~~~~al~~m~~~g~~vits 273 (285)
++|+|--.--|-. |..+..+|.+|+++.-.-. .++++..+...+.|++.|+.+.+.
T Consensus 2 vvViGgG~ig~E~--A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 2 VVVIGGGFIGIEL--AEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEESSSHHHHHH--HHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEECcCHHHHHH--HHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 5566644444433 4444668889888874443 345677788888999999887764
No 81
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=26.32 E-value=3.5e+02 Score=21.91 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=41.3
Q ss_pred cHHHHHHhCCccEEEEEcccC-------chhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHc
Q psy1561 203 SLAKQLEAKKVTDVYVCGLAY-------DVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILEN 266 (285)
Q Consensus 203 ~L~~~Lr~~gi~~viv~Gvat-------d~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~ 266 (285)
.+.+.|+... ++|.|+.... .-.+.....++.++|-+|.|+.|.............+..+...
T Consensus 25 ~i~~~I~~A~-~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~~~~~~~~~l~~~ 94 (176)
T cd00138 25 ALLEAISNAK-KSIYIASFYLSPLITEYGPVILDALLAAARRGVKVRILVDEWSNTDLKISSAYLDSLRAL 94 (176)
T ss_pred HHHHHHHhhh-eEEEEEEeEecccccccchHHHHHHHHHHHCCCEEEEEEcccccCCchHHHHHHHHHHHh
Confidence 3445555433 5677666543 4477888889999999999999888776532333445555543
No 82
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.10 E-value=2.9e+02 Score=20.83 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred ccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEE
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSC 270 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~v 270 (285)
+++++.|...+++-|+|+.-. ..=...++.++++|..|++=+-.+. +.+..++.++..+..+..+
T Consensus 52 ~~~~~ll~~~~~D~V~I~tp~--~~h~~~~~~~l~~g~~v~~EKP~~~--~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 52 TDLEELLADEDVDAVIIATPP--SSHAEIAKKALEAGKHVLVEKPLAL--TLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp SSHHHHHHHTTESEEEEESSG--GGHHHHHHHHHHTTSEEEEESSSSS--SHHHHHHHHHHHHHHTSCE
T ss_pred hHHHHHHHhhcCCEEEEecCC--cchHHHHHHHHHcCCEEEEEcCCcC--CHHHHHHHHHHHHHhCCEE
Confidence 668999998899999998766 3467889999999997777666554 5666676666666666653
No 83
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=25.88 E-value=3.8e+02 Score=25.39 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred cEEEEEcccCchhHHHH-HHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 214 TDVYVCGLAYDVCVGAS-AIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 214 ~~viv~Gvatd~CV~~T-a~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
-+|.++|-..+ +|..+ +..+...|.+++++..-.--.+++..+.+.+.....|+.+.-++++.+.+
T Consensus 157 l~va~vGD~~~-~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK12562 157 MTLVYAGDARN-NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGV 223 (334)
T ss_pred cEEEEECCCCC-CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 37888886543 45555 55556779999998865433333444444344444566655444454444
No 84
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=25.60 E-value=2.6e+02 Score=24.41 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=35.7
Q ss_pred HHHHhCCc--cEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeH
Q psy1561 206 KQLEAKKV--TDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQS 273 (285)
Q Consensus 206 ~~Lr~~gi--~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits 273 (285)
..+++.|. ...+|+.-..|.+. +.+.-+...|++++++.+... + ..-++.|+..|++|+..
T Consensus 40 ~~a~~~g~~~~~~vv~~ssGN~g~-alA~~a~~~g~~~~v~~p~~~--~----~~~~~~~~~~Ga~v~~~ 102 (244)
T cd00640 40 LLAEEEGKLPKGVIIESTGGNTGI-ALAAAAARLGLKCTIVMPEGA--S----PEKVAQMRALGAEVVLV 102 (244)
T ss_pred HHHHHcCCCCCCEEEEeCCcHHHH-HHHHHHHHcCCCEEEEECCCC--C----HHHHHHHHHCCCEEEEE
Confidence 34444553 34555555567664 445555558888887776654 2 23455677777776643
No 85
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=25.36 E-value=2.5e+02 Score=27.38 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=47.2
Q ss_pred ccHHHHHHhCCccEEEEEcccCc--hhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHH
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYD--VCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRN 261 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd--~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~ 261 (285)
.-|...|++.|. +++..|+..| --+..++..|.+. ++++|.+-+++.-+.+...++++
T Consensus 206 ~~l~a~l~~~G~-e~~~~giv~Dd~~~l~~~i~~a~~~-~DviItsGG~SvG~~D~v~~~l~ 265 (404)
T COG0303 206 YMLAALLERAGG-EVVDLGIVPDDPEALREAIEKALSE-ADVIITSGGVSVGDADYVKAALE 265 (404)
T ss_pred HHHHHHHHHcCC-ceeeccccCCCHHHHHHHHHHhhhc-CCEEEEeCCccCcchHhHHHHHH
Confidence 357788998888 7889999999 6677777777777 99999999998877666666666
No 86
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.90 E-value=62 Score=29.71 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=48.3
Q ss_pred ccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCe--EEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHH
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYR--TILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQ 279 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~--v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~ 279 (285)
-.|..+|+.+++++|++.|-...-=- .+-+--...|.. ..|++-.-++ |.......+..|...|..|+.+.++...
T Consensus 58 g~lik~l~~~~v~~vVl~G~v~~Rp~-~~~L~~d~~~l~~lp~Iv~~~~~g-DDaLLk~vi~~~E~~GfKvigahei~~~ 135 (279)
T COG3494 58 GKLIKLLKTEGVDRVVLAGGVERRPN-FRDLRPDKIGLAVLPKIVEALIRG-DDALLKAVIDFIESRGFKVIGAHEIVPG 135 (279)
T ss_pred HHHHHHHHHcCCcEEEEecccccCcc-hhhcccccchhhHHHHHHHHhccC-cHHHHHHHHHHHHhcCcEEecHhhhhhh
Confidence 35788999999999999997642100 000000011110 1223333344 5556677888899999999999999876
Q ss_pred hh
Q psy1561 280 HE 281 (285)
Q Consensus 280 l~ 281 (285)
+.
T Consensus 136 ll 137 (279)
T COG3494 136 LL 137 (279)
T ss_pred hc
Confidence 54
No 87
>PLN02964 phosphatidylserine decarboxylase
Probab=24.83 E-value=54 Score=33.99 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhhccch
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNRWI 81 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi 81 (285)
.+++++++|+.|+.+++|.|+.+||..++..|.
T Consensus 213 seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 213 AANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 577899999999999999999999988887763
No 88
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.81 E-value=4.2e+02 Score=23.23 Aligned_cols=41 Identities=12% Similarity=-0.023 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCeEEEeC-CCCc-cCCHHHHHHHHHHHHHcCCE
Q psy1561 229 ASAIDAITIGYRTILIE-DCCR-GVDMDDMERTRNTILENYGS 269 (285)
Q Consensus 229 ~Ta~da~~~G~~v~Vv~-Da~~-~~~~~~~~~al~~m~~~g~~ 269 (285)
.++..+.+.|+++.+-. +++. ..+++.....++.+...|+.
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 34444445566555544 3332 14455555555555555543
No 89
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.72 E-value=5e+02 Score=23.17 Aligned_cols=35 Identities=14% Similarity=-0.052 Sum_probs=17.4
Q ss_pred HHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHH
Q psy1561 231 AIDAITIGYRTILIEDCCRGVDMDDMERTRNTILE 265 (285)
Q Consensus 231 a~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~ 265 (285)
+..+.+.|-+.+.+.|-+....|+.....+..++.
T Consensus 145 ~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 145 AEVAQEAGADRLRFADTVGILDPFTTYELIRRLRA 179 (259)
T ss_pred HHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 33334445555555555555555554444444443
No 90
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=24.68 E-value=99 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=29.4
Q ss_pred cEEEEEcccCchhHHHHHHHHHhCCCeEEEeC
Q psy1561 214 TDVYVCGLAYDVCVGASAIDAITIGYRTILIE 245 (285)
Q Consensus 214 ~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~ 245 (285)
+-|+|.|-.+|-=++.-|+|+.+|||-|+|..
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~ 35 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRGFIVYVTV 35 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCCeEEEEEe
Confidence 56889999999999999999999999999864
No 91
>PTZ00183 centrin; Provisional
Probab=24.56 E-value=63 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 50 DNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
.+.++.+++.++.+++|.|+.+||....
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l 116 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVA 116 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4577888888888888888888876444
No 92
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=24.43 E-value=3.5e+02 Score=23.88 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=43.0
Q ss_pred cEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEE-EeHHHHHHH
Q psy1561 214 TDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSC-VQSDEVLGQ 279 (285)
Q Consensus 214 ~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~v-its~e~i~~ 279 (285)
+-++|++-...---..|+.-|++.|-+|+++...... ...+ .-..|.+.|+.. .+.+++++.
T Consensus 157 ~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~---~~~~-G~~~Li~~GA~~i~~~~d~~~~ 219 (220)
T TIGR00732 157 RAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNS---PESD-GCHKLIEQGAALITSAKDILET 219 (220)
T ss_pred CEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCC---ccch-HHHHHHHCCCEEECCHHHHHHh
Confidence 5688888777677889999999999999998654432 1112 223455668875 456777764
No 93
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.35 E-value=5.3e+02 Score=24.57 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCC----ccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC----RGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 204 L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~----~~~~~~~~~~al~~m~~~g~~vit 272 (285)
+...|+...-++|+|+|--.- -...|..+.++|.+|+++.... ...+++..+...+.|...|+.++.
T Consensus 128 ~~~~l~~~~~~~vvViGgG~~--g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 198 (427)
T TIGR03385 128 IKQYIDKNKVENVVIIGGGYI--GIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRL 198 (427)
T ss_pred HHHHHhhcCCCeEEEECCCHH--HHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEe
Confidence 444454344478888874422 2234556667899999986433 234555556666777888887664
No 94
>PRK10736 hypothetical protein; Provisional
Probab=24.33 E-value=4.1e+02 Score=25.72 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=45.3
Q ss_pred ccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhC-CCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITI-GYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~-G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
..|...|.+.|+ +||.|+|.-+=.. .-..+++. |..+.|+..+...+-|..+..-.+.+...++.++|
T Consensus 127 ~~l~~~la~~g~--~IVSGlA~GiD~~-AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liS 195 (374)
T PRK10736 127 RLFCEELAKNGL--TITSGLARGIDGV-AHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVS 195 (374)
T ss_pred HHHHHHHHHCCC--EEECcchhhHHHH-HHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEE
Confidence 345566666665 7889998743222 22335555 67888888888877777777777777666666665
No 95
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.28 E-value=1.2e+02 Score=29.92 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=39.4
Q ss_pred CCccHHHHHHhCCccEEEEE---cccCchhHHHHHHHHHhCCCeEEEeCCCC
Q psy1561 200 KGTSLAKQLEAKKVTDVYVC---GLAYDVCVGASAIDAITIGYRTILIEDCC 248 (285)
Q Consensus 200 ~~t~L~~~Lr~~gi~~viv~---Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~ 248 (285)
.+.++.+.|++.|++-++++ |.||- |+..-++..-+.|..|+.+...+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtr-cga~m~keiE~~GIPvV~i~~~~ 374 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTR-CGATMVKEIERAGIPVVHICTVT 374 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchh-HHHHHHHHHHHcCCCEEEEeech
Confidence 46778899999999999998 77765 88888888888899988776543
No 96
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=23.84 E-value=4.4e+02 Score=24.92 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=38.5
Q ss_pred cEEEEEcccCchhHHHH-HHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 214 TDVYVCGLAYDVCVGAS-AIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 214 ~~viv~Gvatd~CV~~T-a~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
.+|.++|--.+ .|..+ +..+...|++++++.--.--.+++..+.+.+.....|+.+.-++++-+.+
T Consensus 156 ~kia~vGD~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~ 222 (332)
T PRK04284 156 IKFTYVGDGRN-NVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGV 222 (332)
T ss_pred cEEEEecCCCc-chHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 37888886534 45444 55566779999998875544444444444344445566554444444433
No 97
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=23.81 E-value=3e+02 Score=24.95 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=41.8
Q ss_pred HhCCccEEEEEcccCchhHH-HHHHHHHhC--CCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 209 EAKKVTDVYVCGLAYDVCVG-ASAIDAITI--GYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 209 r~~gi~~viv~Gvatd~CV~-~Ta~da~~~--G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
.+.| ++|++..+++..--. .+++.|.+. +.+|+|+--.+.+............|...|. +.+++++.+
T Consensus 75 ~~~~-~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~---s~~eI~~~l 145 (275)
T TIGR00762 75 LEEG-DEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGK---SLEEILAKL 145 (275)
T ss_pred HhCC-CeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHH
Confidence 3456 789999999887644 444444433 3589998888777665544444445555554 445555444
No 98
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.75 E-value=4.6e+02 Score=24.70 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=34.0
Q ss_pred cHHHHHHhCCccEEEEEcccCchhHHHHHHHH-HhCCCeEEEeCCCCccCCHHHHHHHHHHHHHc
Q psy1561 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDA-ITIGYRTILIEDCCRGVDMDDMERTRNTILEN 266 (285)
Q Consensus 203 ~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da-~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~ 266 (285)
.|.+.|+..|.++++|+.-....+... +.+. .+.|..+.+..+....-+.+..+++.+.++..
T Consensus 13 ~l~~~~~~~g~~~~livtd~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~ 76 (367)
T cd08182 13 KLPSLLKGLGGKRVLLVTGPRSAIASG-LTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREF 76 (367)
T ss_pred HHHHHHHhcCCCeEEEEeCchHHHHHH-HHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhc
Confidence 355566666655544443222223322 3333 35577777666665555556666777777654
No 99
>PTZ00183 centrin; Provisional
Probab=23.73 E-value=67 Score=25.62 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
....+.++|..++.+++|.|+.+||..++
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l 43 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAM 43 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 56778889999999999999999987554
No 100
>KOG4223|consensus
Probab=23.64 E-value=51 Score=31.10 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=27.6
Q ss_pred cccceeccCC-CC-cchhchHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 33 GLQALFRNDK-GK-IYALKDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 33 ~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
+++.+|+... |+ |.= ....-++..++.++|+||.|+++|+-
T Consensus 222 figd~~~~~~~~~epeW-v~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 222 FIGDLYSHEGNEEEPEW-VLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred HHhHHhhccCCCCCccc-ccccHHHHHHHhhcCCCCccCHHHHh
Confidence 5666777643 21 111 12223588999999999999999975
No 101
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=1.3e+02 Score=25.55 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=34.0
Q ss_pred ccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHH
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD 254 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~ 254 (285)
.+|...++++|++.|+++-+.--+--.+=+.+ ....-+|.++.|..+.+...
T Consensus 62 ~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~-~g~~~~I~fi~Dg~geFTk~ 113 (165)
T COG0678 62 LELADEFKAKGVDEIYCVSVNDAFVMNAWAKS-QGGEGNIKFIPDGNGEFTKA 113 (165)
T ss_pred HHHHHHHHHcCCceEEEEEeCcHHHHHHHHHh-cCCCccEEEecCCCchhhhh
Confidence 34667778999999999877643322222222 11222899999999988754
No 102
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=23.43 E-value=4.6e+02 Score=24.82 Aligned_cols=66 Identities=8% Similarity=-0.008 Sum_probs=38.8
Q ss_pred cEEEEEcccCchhHHHH-HHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 214 TDVYVCGLAYDVCVGAS-AIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 214 ~~viv~Gvatd~CV~~T-a~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
.+|.++|--.+ +|..+ +..+...|.+|+++.--.--.+++..+.+.+..+..|+.+.-++++-+.+
T Consensus 156 ~~va~vGd~~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~ 222 (331)
T PRK02102 156 LKLAYVGDGRN-NMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAV 222 (331)
T ss_pred CEEEEECCCcc-cHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 47888886543 46655 44455679999999875544444444444444444566654444444433
No 103
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=22.83 E-value=4.5e+02 Score=24.84 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=37.2
Q ss_pred EEEEEcccCchhHHHH-HHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 215 DVYVCGLAYDVCVGAS-AIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 215 ~viv~Gvatd~CV~~T-a~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
+|.++|--.+. |..+ +..+...|++++++.--.--.+.+..+.+.+.....|+.+.-++++.+.+
T Consensus 158 ~ia~vGD~~~~-v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK01713 158 SYVYIGDARNN-MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAV 223 (334)
T ss_pred EEEEECCCccC-HHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 68888876444 5554 55566779999998865443333333333333344566554444444443
No 104
>PRK08329 threonine synthase; Validated
Probab=22.73 E-value=4.7e+02 Score=24.59 Aligned_cols=60 Identities=7% Similarity=0.082 Sum_probs=39.3
Q ss_pred HHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 205 AKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 205 ~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
...+++.|.++|+.+. +.|.+..- |.-+..+|++++|+..... + ..-+..|+..|++|+.
T Consensus 96 i~~a~~~g~~~vv~aS-sGN~g~al-A~~aa~~G~~~~v~vp~~~--~----~~k~~~~~~~GA~v~~ 155 (347)
T PRK08329 96 VAKLKEEGINEVVIDS-SGNAALSL-ALYSLSEGIKVHVFVSYNA--S----KEKISLLSRLGAELHF 155 (347)
T ss_pred HHHHHHcCCCEEEEEC-CCcHHHHH-HHHHHHcCCcEEEEECCCC--h----HHHHHHHHHcCCEEEE
Confidence 3345667888888876 66666544 4455568999888865432 2 3345667778888764
No 105
>KOG0027|consensus
Probab=22.51 E-value=75 Score=25.91 Aligned_cols=29 Identities=38% Similarity=0.524 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
....++++|+.|+++++|.++.+|+..|.
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~l 34 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVL 34 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHH
Confidence 35678999999999999999999976443
No 106
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=22.16 E-value=4.1e+02 Score=24.63 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred ccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 213 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 213 i~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
.++|+.++ ..++++ +.|.-+..+|++++|+.....+ +. .++.|+..|++|+.
T Consensus 51 ~~~vv~aS-sGN~g~-alA~~a~~~G~~~~iv~p~~~~--~~----k~~~l~~~GA~v~~ 102 (316)
T cd06448 51 CVHVVCSS-GGNAGL-AAAYAARKLGVPCTIVVPESTK--PR----VVEKLRDEGATVVV 102 (316)
T ss_pred CCeEEEeC-CcHHHH-HHHHHHHHcCCCEEEEECCCCC--HH----HHHHHHHcCCEEEE
Confidence 66776666 566666 4455666789998888776532 22 35667778887664
No 107
>KOG0031|consensus
Probab=22.08 E-value=83 Score=26.80 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAFCW 77 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
-....++.|+.++.|.||.+|++.+.-++
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~ 58 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDML 58 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHH
Confidence 34556788999999999999999987554
No 108
>PRK03670 competence damage-inducible protein A; Provisional
Probab=22.07 E-value=4e+02 Score=24.17 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=35.1
Q ss_pred ccHHHHHHhCCccEEEEEcccCchhH--HHHHHHHHhCCCeEEEeCCCCccCCHH
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVCV--GASAIDAITIGYRTILIEDCCRGVDMD 254 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~CV--~~Ta~da~~~G~~v~Vv~Da~~~~~~~ 254 (285)
.-|...|++.|++ +.-+++..|--- ..+...+...++.+++.+-+++.-..+
T Consensus 23 ~~la~~L~~~G~~-v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD 76 (252)
T PRK03670 23 AFIAQKLTEKGYW-VRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDD 76 (252)
T ss_pred HHHHHHHHHCCCE-EEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCC
Confidence 4578889999987 555555555333 455556667788999999776665544
No 109
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.01 E-value=4.1e+02 Score=22.25 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=46.9
Q ss_pred CCCccHHHHHHhCCccEEEEEcccC-chh------HHHHHHHHHhCCCeEEEeCCCC-ccCCHHHHHHHHHHHHHcCCEE
Q psy1561 199 LKGTSLAKQLEAKKVTDVYVCGLAY-DVC------VGASAIDAITIGYRTILIEDCC-RGVDMDDMERTRNTILENYGSC 270 (285)
Q Consensus 199 ~~~t~L~~~Lr~~gi~~viv~Gvat-d~C------V~~Ta~da~~~G~~v~Vv~Da~-~~~~~~~~~~al~~m~~~g~~v 270 (285)
..+..+.+.|++.|+. ++...+.+ |.. +...++.....| .|+++.|.- ...+.+.....+..++..|-++
T Consensus 107 ~~~~~~~~~l~~~G~~-~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g-~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~ 184 (191)
T TIGR02764 107 AFNKAVLKAAESLGYT-VVHWSVDSRDWKNPGVESIVDRVVKNTKPG-DIILLHASDSAKQTVKALPTIIKKLKEKGYEF 184 (191)
T ss_pred CCCHHHHHHHHHcCCe-EEEecCCCCccCCCCHHHHHHHHHhcCCCC-CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEE
Confidence 3467788899999987 44433322 221 122333334445 477777632 2223455677888899999999
Q ss_pred EeHHHHH
Q psy1561 271 VQSDEVL 277 (285)
Q Consensus 271 its~e~i 277 (285)
++.++++
T Consensus 185 vtl~~l~ 191 (191)
T TIGR02764 185 VTISELI 191 (191)
T ss_pred EEHHHhC
Confidence 9987763
No 110
>KOG4223|consensus
Probab=21.75 E-value=51 Score=31.12 Aligned_cols=47 Identities=36% Similarity=0.465 Sum_probs=31.0
Q ss_pred cccCCCccchhhcccccceeccCCCCcchhchHHHHHHHHHHHhcCCCcchhhhhh
Q psy1561 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74 (285)
Q Consensus 19 ~G~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (285)
||.|...++.+ |-+|.--++- ..--+.....-+++|+||+|+.+||.
T Consensus 177 dg~lt~EEF~a--------FLHPEe~p~M-~~iVi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 177 DGSLTLEEFTA--------FLHPEEHPHM-KDIVIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred CCcccHHHHHh--------ccChhhcchH-HHHHHHHHHhhcccCCCCceeHHHHH
Confidence 46666665554 4443321111 34457788899999999999999983
No 111
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=21.70 E-value=3.9e+02 Score=24.55 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=37.9
Q ss_pred HHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 207 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 207 ~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
.+.++|.++|+.+ -+.|++.. .|.-+..+|++++++.+... ++ .-+..|+..|++|+.
T Consensus 64 ~a~~~g~~~vv~~-SsGN~g~a-lA~~a~~~G~~~~ivvp~~~--~~----~k~~~l~~~GA~Vi~ 121 (324)
T cd01563 64 KAKELGVKAVACA-STGNTSAS-LAAYAARAGIKCVVFLPAGK--AL----GKLAQALAYGATVLA 121 (324)
T ss_pred HHHHcCCCEEEEe-CCCHHHHH-HHHHHHHcCCceEEEEeCCC--CH----HHHHHHHHcCCEEEE
Confidence 3444676666554 57777766 55667788999888877654 22 235567777888774
No 112
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.63 E-value=5.5e+02 Score=24.29 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=14.4
Q ss_pred hCCCeEEEeCCCCccCCHHHHHHHHHHHHH
Q psy1561 236 TIGYRTILIEDCCRGVDMDDMERTRNTILE 265 (285)
Q Consensus 236 ~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~ 265 (285)
+.|..+.+..+....-+.+..+++.+.++.
T Consensus 52 ~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~ 81 (374)
T cd08189 52 GAGIEYAVYDGVPPDPTIENVEAGLALYRE 81 (374)
T ss_pred hcCCeEEEeCCCCCCcCHHHHHHHHHHHHh
Confidence 345555555444443344445555555544
No 113
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.39 E-value=1.4e+02 Score=29.35 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=38.9
Q ss_pred CCccHHHHHHhCCccEEEEE---cccCchhHHHHHHHHHhCCCeEEEeCC
Q psy1561 200 KGTSLAKQLEAKKVTDVYVC---GLAYDVCVGASAIDAITIGYRTILIED 246 (285)
Q Consensus 200 ~~t~L~~~Lr~~gi~~viv~---Gvatd~CV~~Ta~da~~~G~~v~Vv~D 246 (285)
.++++.+.|++.|++-++++ |.||- |+..-++..-+.|..|+.+..
T Consensus 324 ~g~eIa~~Lk~dgVDAVILTstCgtC~r-~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 324 FAKEFVVELKQGGVDAVILTSTUGTCTR-CGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchh-HHHHHHHHHHHcCCCEEEEee
Confidence 47778899999999999998 77765 888888888889999888766
No 114
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=21.09 E-value=1.6e+02 Score=24.80 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=10.7
Q ss_pred HcCCEEEeHHHHHHHhh
Q psy1561 265 ENYGSCVQSDEVLGQHE 281 (285)
Q Consensus 265 ~~g~~vits~e~i~~l~ 281 (285)
..|+.++++++++..+.
T Consensus 112 ~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 112 GRGAKRISSEEFLRELK 128 (166)
T ss_pred hCCCEEEcHHHHHHHHH
Confidence 45666666666666553
No 115
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=20.85 E-value=1.6e+02 Score=26.32 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=34.9
Q ss_pred ccHHHHHHhCCccEEEEEcccCchhHHHHHHHHHhCCCeEEEeC
Q psy1561 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 245 (285)
Q Consensus 202 t~L~~~Lr~~gi~~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~ 245 (285)
..+.+.|+..|+..+..-|...|-++.+-+..+...|++++|++
T Consensus 88 ~~~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S 131 (240)
T cd00008 88 PLIKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVS 131 (240)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45667888889988888898887777777777777888888876
No 116
>PTZ00184 calmodulin; Provisional
Probab=20.60 E-value=91 Score=24.38 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHhcCCCcchhhhhhh
Q psy1561 49 KDNELEETFAVFDLNQDGLIDREEFAF 75 (285)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
..+.+++++..++.+++|.|+.+||..
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~ 35 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGT 35 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 456788999999999999999999864
No 117
>PRK08703 short chain dehydrogenase; Provisional
Probab=20.59 E-value=4e+02 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=9.3
Q ss_pred CccHHHHHHhCCccEEEEEc
Q psy1561 201 GTSLAKQLEAKKVTDVYVCG 220 (285)
Q Consensus 201 ~t~L~~~Lr~~gi~~viv~G 220 (285)
+..|...|.++|. +|++++
T Consensus 19 G~~la~~l~~~g~-~V~~~~ 37 (239)
T PRK08703 19 GEQVAKAYAAAGA-TVILVA 37 (239)
T ss_pred HHHHHHHHHHcCC-EEEEEe
Confidence 4555555555554 244443
No 118
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=20.52 E-value=5.7e+02 Score=24.50 Aligned_cols=66 Identities=11% Similarity=-0.054 Sum_probs=41.6
Q ss_pred EEEEEcccC-----chhHHHH-HHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 215 DVYVCGLAY-----DVCVGAS-AIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 215 ~viv~Gvat-----d~CV~~T-a~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
+|.++|.-- ..+|..+ +..+...|.+|+++.--.-..+++..+.+.+.....|+.+.-++++.+.+
T Consensus 172 kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~ 243 (357)
T TIGR03316 172 KFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAF 243 (357)
T ss_pred EEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 678887421 2355554 55555679999999876555566666666666667777755444444444
No 119
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.45 E-value=2.4e+02 Score=23.57 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=39.7
Q ss_pred CccEEEEEcccCchh-HHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEe
Q psy1561 212 KVTDVYVCGLAYDVC-VGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272 (285)
Q Consensus 212 gi~~viv~Gvatd~C-V~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vit 272 (285)
+-.-+++||---+-- =...++.+.++|++|.|+.=.-.....+.....++.++..|+.++.
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 456788898854432 3467788889999999933222223345677778889999988875
No 120
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=20.34 E-value=1e+02 Score=24.30 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=22.1
Q ss_pred cchhchHHHHHHHHHHHhcCCCcchhhhhhhh
Q psy1561 45 IYALKDNELEETFAVFDLNQDGLIDREEFAFC 76 (285)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (285)
.+......+.-.|..+++|.||.|+++|+...
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l 79 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPL 79 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGG
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHH
Confidence 34456777888899999999999999997643
No 121
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.20 E-value=5.3e+02 Score=23.07 Aligned_cols=42 Identities=5% Similarity=-0.048 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCE
Q psy1561 228 GASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGS 269 (285)
Q Consensus 228 ~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~ 269 (285)
...+..+.++|+.|.+---.+...+++......+.+...|+.
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d 156 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGAD 156 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCC
Confidence 334444445555443332112223444443344444444443
No 122
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=20.17 E-value=5.8e+02 Score=24.19 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=38.2
Q ss_pred EEEEEcccCchhHHHHHHHHHhCCCeEEEeCCCCccCCHHHHHHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 215 DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 215 ~viv~Gvatd~CV~~Ta~da~~~G~~v~Vv~Da~~~~~~~~~~~al~~m~~~g~~vits~e~i~~l 280 (285)
+|.++|--. .-+.+-+.-+...|.+|+++.--.-..+++..+.+-+.....|+.+.-++++.+.+
T Consensus 156 kv~~vGD~~-~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav 220 (338)
T PRK02255 156 KVVFVGDAT-QVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAV 220 (338)
T ss_pred EEEEECCCc-hHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHh
Confidence 788899653 33333355555679999999875554554444444344444566655444554444
No 123
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.02 E-value=1.3e+02 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.039 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCEEEeHHHHHHHh
Q psy1561 257 ERTRNTILENYGSCVQSDEVLGQH 280 (285)
Q Consensus 257 ~~al~~m~~~g~~vits~e~i~~l 280 (285)
-..|+.|...|...++|.++-+.+
T Consensus 15 ~r~L~~l~~~G~~~vSS~~La~~~ 38 (50)
T PF06971_consen 15 LRYLEQLKEEGVERVSSQELAEAL 38 (50)
T ss_dssp HHHHHHHHHTT-SEE-HHHHHHHH
T ss_pred HHHHHHHHHcCCeeECHHHHHHHH
Confidence 346888999999999999998775
Done!