RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1561
(285 letters)
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase).
Nicotinamidase, a ubiquitous enzyme in prokaryotes,
converts nicotinamide to nicotinic acid (niacin) and
ammonia, which in turn can be recycled to make
nicotinamide adenine dinucleotide (NAD). The same enzyme
is also called pyrazinamidase, because in converts the
tuberculosis drug pyrazinamide (PZA) into its active
form pyrazinoic acid (POA).
Length = 196
Score = 209 bits (535), Expect = 3e-68
Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 18/177 (10%)
Query: 84 VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
++ IN LL ++ V + DWHP+NH SF N + T
Sbjct: 27 IVPLINALLSLFQYDLVVATQDWHPANHASFASN-------------HPGQMPFIT---- 69
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
P Q LWP HCVQ + GAELH L V D + V KGT+P++DSYS F+DN + T
Sbjct: 70 -LPPGPQVLWPDHCVQGTPGAELHPGLPVPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTG 128
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
LA+ L + + V V GLA D CV A+A+DA+ G+ ++ED CR VD + +ER
Sbjct: 129 LAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAI 185
Score = 33.4 bits (77), Expect = 0.081
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 5 NSALLVIDVQNDFISG 20
ALLV+DVQNDF G
Sbjct: 1 TDALLVVDVQNDFCPG 16
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional.
Length = 212
Score = 177 bits (450), Expect = 3e-55
Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 21/183 (11%)
Query: 84 VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
VI IN++ + +F+ V + DWHP NH+SF +H D T
Sbjct: 38 VIPVINQVRQSHHFDLVVATQDWHPPNHISF-------ASNHGKPKILPDGTT------- 83
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
Q LWP HCVQ + GA+LHKDL V I + KGT+ +VDSYS F ++K T
Sbjct: 84 ------QGLWPPHCVQGTKGAQLHKDLVVERIDIIIRKGTNRDVDSYSAFDNDKG-SKTG 136
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTI 263
LA+ L+A V V++CGLA+D CV +A+DA+ +G++ +++ED R VD D + + R +
Sbjct: 137 LAQILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAEL 196
Query: 264 LEN 266
LE
Sbjct: 197 LEA 199
Score = 33.5 bits (77), Expect = 0.079
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 5 NSALLVIDVQNDFISG 20
N AL+++DVQNDF G
Sbjct: 12 NDALIIVDVQNDFCKG 27
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional.
Length = 212
Score = 133 bits (336), Expect = 4e-38
Identities = 81/252 (32%), Positives = 111/252 (44%), Gaps = 72/252 (28%)
Query: 5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQ 64
ALL++D+QNDF +G AL E + T V N+
Sbjct: 2 KRALLLVDLQNDFCAGG-------------------------ALAVPEGDSTIDV--ANR 34
Query: 65 DGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIH 124
LID +C +R I V+ S DWHP+NH SF N
Sbjct: 35 --LID-----WCQSRGIPVIA-----------------SQDWHPANHGSFASN------- 63
Query: 125 HTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIK--VYKG 182
A+ DG + Q WP HCVQ+S GA LH L AI +KG
Sbjct: 64 -------HGAEPGTQGELDG---LPQTWWPDHCVQNSEGAALHPLLN--QKAIDAVFHKG 111
Query: 183 TDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTI 242
+P +DSYS F+DN + T+L L +T++ V GLA D CV + +DA+ +GY+
Sbjct: 112 ENPLIDSYSAFFDNGHRQKTALDDWLREHGITELIVMGLATDYCVKFTVLDALALGYQVN 171
Query: 243 LIEDCCRGVDMD 254
+I D CRGV++
Sbjct: 172 VITDGCRGVNLQ 183
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family
contains amidohydrolases, like CSHase
(N-carbamoylsarcosine amidohydrolase), involved in
creatine metabolism and nicotinamidase, converting
nicotinamide to nicotinic acid and ammonia in the
pyridine nucleotide cycle. It also contains
isochorismatase, an enzyme that catalyzes the conversion
of isochorismate to 2,3-dihydroxybenzoate and pyruvate,
via the hydrolysis of the vinyl ether bond, and other
related enzymes with unknown function.
Length = 161
Score = 111 bits (280), Expect = 2e-30
Identities = 61/259 (23%), Positives = 93/259 (35%), Gaps = 101/259 (38%)
Query: 7 ALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDG 66
ALLV+D+QNDF+ G + D
Sbjct: 1 ALLVVDMQNDFVP---------------------GGGLLLPGADE--------------- 24
Query: 67 LIDREEFAFCWNRWIKVVIEPINKLLDT-VNFNA-VFYSLDWHPSNHVSFIDNIKLRKIH 124
++ IN+LL V ++ DWHP + F +
Sbjct: 25 -----------------LVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAEL------- 60
Query: 125 HTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTD 184
LWP HCV+ + GAEL +L + + + + K
Sbjct: 61 ---------------------------LWPPHCVKGTEGAELVPELAPLPDDLVIEKT-- 91
Query: 185 PEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILI 244
YS F+ GT L + L + + + VCG+A D+CV A+A DA+ +GYR I++
Sbjct: 92 ----RYSAFY------GTDLDELLRERGIDTLVVCGIATDICVLATARDALDLGYRVIVV 141
Query: 245 EDCCRGVDMDDMERTRNTI 263
ED C D +D E +
Sbjct: 142 EDACATRDEEDHEAALERL 160
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 205
Score = 105 bits (263), Expect = 2e-27
Identities = 62/263 (23%), Positives = 91/263 (34%), Gaps = 86/263 (32%)
Query: 1 IVRPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVF 60
+ +AL+V+D+QNDF+ G +L
Sbjct: 1 LDPAKTALIVVDMQNDFMPGGGSL------------------------------------ 24
Query: 61 DLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNA--VFYSLDWHPSNHVSFIDNI 118
+ +I I L+D V + DWHP++ S
Sbjct: 25 --------------AALGVDGRKIIPNIAALVDAARAAGQPVIATQDWHPADISSL---- 66
Query: 119 KLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDL-KVVDNAI 177
+S + P WPRH V+ + GAEL +L VD+A
Sbjct: 67 --AGSPESSKLFP---------------------WPRHDVKGTPGAELLGELPPAVDDAQ 103
Query: 178 KVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITI 237
V + + YS F GT L L + V VCG+A D+CV A+A DA +
Sbjct: 104 LVPEDVIFKKHGYSAFA------GTDLDDILRNLGIDTVVVCGIATDICVLATARDAFDL 157
Query: 238 GYRTILIEDCCRGVDMDDMERTR 260
GY+ L+ED G +D
Sbjct: 158 GYQVTLVEDATAGSSLDRSGEAA 180
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family. This family
are hydrolase enzymes.
Length = 173
Score = 78.6 bits (194), Expect = 9e-18
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 139 TVVFDGDTPIRQR--LWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDN 196
V + D +WGAEL +L + V K +S F
Sbjct: 47 RHVPEPDDADDALKDRPSGAFPPGTWGAELVPELAPLPGDPVVDKTR------FSAFA-- 98
Query: 197 KKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDD 255
T L + L + + + G+A DVCV ++A DA GY +++ D C +
Sbjct: 99 ----TTDLDEILRELGIDTLVLAGVATDVCVLSTARDAFDRGYEVVVVSDACASRSPEA 153
Score = 32.4 bits (74), Expect = 0.13
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 6 SALLVIDVQNDFISGTLNLSQCSA 29
+ALLVID+QN F SG ++ +A
Sbjct: 1 TALLVIDMQNGFFSGGPKVAGIAA 24
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase)
hydrolyzes N-carbamoylsarcosine to sarcosine, carbon
dioxide and ammonia. CSHase is involved in one of the
two alternative pathways for creatinine degradation to
glycine in microorganisms.This CSHase-containing pathway
degrades creatinine via N-methylhydantoin
N-carbamoylsarcosine and sarcosine to glycine. Enzymes
of this pathway are used in the diagnosis for renal
disfunction, for determining creatinine levels in urine
and serum.
Length = 179
Score = 51.2 bits (123), Expect = 5e-08
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 201 GTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
GTSLA L A+ V + V G + C+ A+A+DA+ G+R I++ +C G
Sbjct: 102 GTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECV-GDRAPAPHEAN 160
Query: 261 NTILEN-YGSCVQSDEVL 277
++N YG V +D+ L
Sbjct: 161 LFDIDNKYGDVVSTDDAL 178
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related
amidohydrolases. Cysteine hydrolases of unknown
function that share the catalytic triad with other
amidohydrolases, like nicotinamidase, which converts
nicotinamide to nicotinic acid and ammonia.
Length = 155
Score = 49.9 bits (120), Expect = 1e-07
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 163 GAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLA 222
G E+H +L ++ + K GT L + L + + +CG
Sbjct: 61 GWEIHPELAPLEGETVIEKTV------------PNAFYGTDLEEWLREAGIDHLVICGAM 108
Query: 223 YDVCVGASAIDAITIGYRTILIEDCCRGVDMDD 255
++CV + A +GY ++ D C D+ D
Sbjct: 109 TEMCVDTTVRSAFDLGYDVTVVADACATFDLPD 141
Score = 32.2 bits (74), Expect = 0.15
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 7 ALLVIDVQNDFISGTL---NLSQCSAKQNGLQALFRN 40
ALLVIDVQN + G L N L A R
Sbjct: 1 ALLVIDVQNGYFDGGLPPLNNEAALENIAALIAAARA 37
>gnl|CDD|238494 cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is
an homooctameric hydrolase with unknown specificity.
Despite its weak sequence similarity, it is structurally
related to other amidohydrolases and shares conserved
active site residues with them. Multimerisation
interface seems not to be conserved in all members.
Length = 157
Score = 41.8 bits (99), Expect = 7e-05
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMER 258
K L+A V + GL VCV +A+D + GY ++ D C +D E
Sbjct: 79 FRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHEL 133
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 35.7 bits (84), Expect = 9e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 53 LEETFAVFDLNQDGLIDREEF 73
L++ F FD N DG I +EE
Sbjct: 1 LKDLFRQFDTNGDGKISKEEL 21
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFCWNR 79
L + E++ F FD + DG I EEF R
Sbjct: 21 LSEEEVDILFREFDTDGDGKISFEEFCVLLQR 52
>gnl|CDD|183137 PRK11440, PRK11440, putative hydrolase; Provisional.
Length = 188
Score = 38.6 bits (90), Expect = 0.001
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 201 GTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
GT L QL + + + +CG++ ++ V ++A +A +G+ ++ ED C + + +
Sbjct: 109 GTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQNSM 168
Query: 261 NTILENYGSCVQSDEVL 277
N I +E+L
Sbjct: 169 NHIFPRIARVRSVEEIL 185
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 52 ELEETFAVFDLNQDGLIDREEFAFCWN 78
EL E F +FD + DG I +E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALK 27
Score = 34.1 bits (79), Expect = 0.006
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L + E++E D + DG ID EEF
Sbjct: 33 LSEEEIDEMIREVDKDGDGKIDFEEFL 59
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 34.3 bits (80), Expect = 0.003
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL+E F FD + DG I EEF
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEF 22
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 33.9 bits (79), Expect = 0.004
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL+E F +FD + DG ID EEF
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEF 22
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 35.0 bits (81), Expect = 0.015
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
K+ EL E F +FD + DG I E
Sbjct: 90 KEEELREAFKLFDKDHDGYISIGEL 114
Score = 34.2 bits (79), Expect = 0.031
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 23/88 (26%)
Query: 10 VIDVQND------FISGTLNLSQCSAKQNGLQALFR----NDKGKI------YALK---- 49
ID N+ F++ + K+ L+ F+ + G I LK
Sbjct: 64 EIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE 123
Query: 50 ---DNELEETFAVFDLNQDGLIDREEFA 74
D E+E+ +D + DG ID EEF
Sbjct: 124 RLSDEEVEKLLKEYDEDGDGEIDYEEFK 151
Score = 30.4 bits (69), Expect = 0.58
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
EL+E F +FD + DGLIDR E
Sbjct: 20 QELKEAFQLFDRDSDGLIDRNEL 42
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 31.0 bits (71), Expect = 0.044
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL E F +FD + DG I EE
Sbjct: 1 ELREAFKLFDKDGDGYISAEEL 22
>gnl|CDD|227649 COG5345, COG5345, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 358
Score = 33.3 bits (76), Expect = 0.11
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 103 SLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLW 153
S D N V F+D I I +TS I PE A+ + F DT R W
Sbjct: 223 SFDQRADNLVQFVDRIA-TDIGNTSAILPERAENVNEGWF--DTRADDRFW 270
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 30.4 bits (69), Expect = 0.12
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 11 IDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDR 70
+D D G +++ + + L+AL + + +E F D + DG I
Sbjct: 3 LDKDGD---GYIDVEEL---RKLLKALGLKLTDE---EVEELIEADFNEIDKDGDGRISF 53
Query: 71 EEFA 74
EEF
Sbjct: 54 EEFL 57
>gnl|CDD|217039 pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These
enzymes EC:2.4.1.25 transfer a segment of a
(1,4)-alpha-D-glucan to a new 4-position in an acceptor,
which may be glucose or (1,4)-alpha-D-glucan.
Length = 493
Score = 31.2 bits (71), Expect = 0.61
Identities = 31/122 (25%), Positives = 39/122 (31%), Gaps = 41/122 (33%)
Query: 22 LNLSQCSAKQNGLQALF---RNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA-FC- 76
L + + LQ L R D KIYA K L++ F F GL D E F F
Sbjct: 73 FGLLPKATRLEDLQELSDLDRVDYSKIYAAKRPALKKAFKNF--RSSGLEDVEAFEKFRE 130
Query: 77 -----------------------WNRW--------IKVVIEPINKLLDTVNFNAVFYSLD 105
WN W + + E NKL D V+F L
Sbjct: 131 EESYWLEDYALFMAIKEHFGGIPWNAWPKPLRHRDAEALKEFRNKLADEVDF---HSYLQ 187
Query: 106 WH 107
+
Sbjct: 188 YL 189
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 30.5 bits (69), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 54 EETFAVFDLNQDGLIDREEFA 74
+E F ++DL+ DG I REE+
Sbjct: 337 QEIFRLYDLDGDGFITREEWL 357
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs
that recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 28.4 bits (64), Expect = 1.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFC 76
L L + + + D++ DG +D++EFA
Sbjct: 41 LPQTLLAKIWNLADIDNDGELDKDEFALA 69
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 30.2 bits (68), Expect = 1.5
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 8 LLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGL 67
L ++D D G L+ S+ S L F N + N+ EE F DLN DG+
Sbjct: 185 LAIVDYDED---GQLSFSEFSD----LIKAFGN------LVAANKKEELFKAADLNGDGV 231
Query: 68 IDREEFA 74
+ +E A
Sbjct: 232 VTIDELA 238
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 30.0 bits (68), Expect = 1.6
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 34 LQALF-RNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
L+ F + + D EL + DL + G I+ + RW
Sbjct: 341 LRVEFGGPGDESVSTMSDEELVA-AVLDDLKKLGGINGDPVFVEVTRWKY 389
>gnl|CDD|163356 TIGR03614, RutB, pyrimidine utilization protein B. RN RM
PMID:16540542 RT A previously undescribed pathway for
pyrimidine catabolism. RA Loh KD, Gyaneshwar P,
Markenscoff Papadimitriou E, Fong R, Kim KS, Parales R,
Zhou Z, Inwood W, Kustu S RL Proc Natl Acad Sci U S A.
2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Length = 226
Score = 29.0 bits (65), Expect = 2.3
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 190 YSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR 249
YS F++ T L L A+ + ++ G+A +VCV ++ D + Y +++ED
Sbjct: 134 YSGFFN------TPLDSMLRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187
Query: 250 GVDMDDMER 258
D M++
Sbjct: 188 QAGPDFMQK 196
>gnl|CDD|178229 PLN02621, PLN02621, nicotinamidase.
Length = 197
Score = 28.6 bits (64), Expect = 2.5
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 153 WPRHCVQD-SWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAK 211
W + D + AEL ++ V +V E +YS F T L ++L
Sbjct: 77 WDGDLILDGTTEAELMPEIGRVTGPDEVV-----EKSTYSAF------YNTRLEERLRKI 125
Query: 212 KVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERT 259
V +V V G+ ++C +A +A G+R D + + E T
Sbjct: 126 GVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATATANEELHEAT 173
Score = 27.4 bits (61), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 5 NSALLVIDVQNDFIS 19
+ALLVID+QN F S
Sbjct: 20 QAALLVIDMQNYFSS 34
>gnl|CDD|220014 pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate
binding protein like. Nucleotidyltransferases (EC
2.7.7) comprise a large enzyme family with diverse
roles in polynucleotide synthesis and modification.
This domain is structurally related to kanamycin
nucleotidyltransferase (KNTase) and forms a complex
with HI0073, a sequence homolog of the
nucleotide-binding domain of this
nucleotidyltransferase superfamily.
Length = 122
Score = 28.0 bits (63), Expect = 2.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 53 LEETFAV----FDLNQDGLIDREEFAF--CWNRWIKVVIE 86
LEE + DL +DG+I R EF + W +K +E
Sbjct: 13 LEEALELSDPLNDLERDGVIQRFEFTYELAWK-LLKDYLE 51
>gnl|CDD|193239 pfam12763, efhand_3, Cytoskeletal-regulatory complex EF hand.
This is an efhand family from the N-terminal of actin
cytoskeleton-regulatory complex END3 and similar
proteins from fungi and closely related species.
Length = 104
Score = 27.7 bits (62), Expect = 3.1
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 24 LSQCSAKQNGLQA--LFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWI 81
L + K G Q + +N + L D++L + + + D++ DG +D EEF +
Sbjct: 19 LKPENNKLTGDQVSPVLKNSR-----LPDDQLAKIWDLADIDSDGKLDFEEFCIA----M 69
Query: 82 KVVIEPINKLLDTV 95
+++ + +N + V
Sbjct: 70 RLIFDLVNGNIADV 83
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 28.6 bits (65), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 47 ALKDNELEETFAVF-DLNQDGLI 68
ALKD EL ++F+V + DGL+
Sbjct: 101 ALKDPELADSFSVVRKVAPDGLL 123
>gnl|CDD|224452 COG1535, EntB, Isochorismate hydrolase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 218
Score = 27.9 bits (62), Expect = 5.1
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 155 RHCVQDSWGAELHK---DLKVVDNAIKVYKGTDPEVDSYSVF-WDNKKLKGTSLAKQLEA 210
R ++D WG L KVVD P D + W + L + L
Sbjct: 88 RALLKDFWGPGLTASPEQQKVVDELA-------PGADDTVLTKWRYSAFHRSPLLQMLRE 140
Query: 211 KKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIED 246
K + + G+ + +A DA + ++ D
Sbjct: 141 KGRDQLIITGVYAHIGCLTTATDAFMRDIQPFMVAD 176
>gnl|CDD|217658 pfam03650, UPF0041, Uncharacterized protein family (UPF0041).
Length = 120
Score = 27.1 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 77 WNRWIKVVIEPINKLLDTVNF 97
W RW +V++P N LL +VNF
Sbjct: 60 WTRW-SLVVKPKNYLLASVNF 79
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 26.5 bits (59), Expect = 7.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 61 DLNQDGLIDREEFAFC 76
D ++DGLI E+ C
Sbjct: 97 DADKDGLISLREWCKC 112
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 27.8 bits (63), Expect = 7.6
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 37 LFR--NDKGKIYALKDNELEET 56
L+R K KIYAL + E EE
Sbjct: 531 LYRVDKGKKKIYALDEEEKEEL 552
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 27.3 bits (60), Expect = 9.5
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 54 EETFAVFDLNQDGLIDREEFAF------CWNRWIKVVIEPINKLLDTVNFNAVFYSLDWH 107
E+ + + LN+DG ID E+F ++I +IE +K+L + F +W
Sbjct: 134 EKCYQYWCLNEDGNIDMEDFRIETLKTSVRAKYILTLIEITDKILKDSRKISHFQCSEWF 193
Query: 108 ----PSNHVSFIDNIKL 120
PS+H FI IK+
Sbjct: 194 EDETPSDHPDFIKFIKI 210
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated.
Length = 588
Score = 27.3 bits (62), Expect = 9.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 66 GLIDREEFAFCW 77
GLID ++FAF W
Sbjct: 417 GLIDEDKFAFLW 428
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 26.6 bits (59), Expect = 10.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEFAF 75
E+ E F +FD + G ID +E
Sbjct: 18 EIREAFDLFDTDGSGTIDPKELKV 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,489,100
Number of extensions: 1384244
Number of successful extensions: 1145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 64
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.8 bits)