RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1561
(285 letters)
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic;
2.68A {Leishmania infantum}
Length = 227
Score = 182 bits (464), Expect = 3e-57
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 33/200 (16%)
Query: 84 VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
+++ IN + + F + DWHP NH SF+ +
Sbjct: 61 LLDGINAVSSQLPFRYQVATQDWHPENHCSFVTHGGP----------------------- 97
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
WP HCVQ S GA+LH L + KG + DSYS F ++ T
Sbjct: 98 ---------WPPHCVQGSAGAQLHAGLHTQRINAVIRKGVTQQADSYSAFVEDNG-VSTG 147
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTI 263
LA L + V+VCG+AYD CV +A+DA G+ +L+ED VD +
Sbjct: 148 LAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLTAAVDDAAWSARTAEL 207
Query: 264 LENYGSCVQSDEVLGQHENT 283
+ ++S ++ + T
Sbjct: 208 KDAGVVLLKSSALVAEGTQT 227
Score = 37.8 bits (88), Expect = 0.002
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 1 IVRPNSALLVIDVQNDFIS 19
+ L++ D+Q DF++
Sbjct: 30 VSSTTDVLIIADMQVDFLA 48
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A
{Acinetobacter baumannii} PDB: 2wta_A*
Length = 235
Score = 181 bits (461), Expect = 9e-57
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 19/197 (9%)
Query: 84 VIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFD 143
+I IN+L F V + DWHP NH+SF N Q ++T+ D
Sbjct: 56 IIPTINQLAGC--FENVVLTQDWHPDNHISFAAN-------------HPGKQPFETIELD 100
Query: 144 GDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTS 203
Q LWP+HC+Q + AE H DL + + + KG +DSYS F + T
Sbjct: 101 YG---SQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTG 157
Query: 204 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD-DMERTRNT 262
L L+ + + VYV G+A D CV +A+DA+ G++T++IED C+G+D++ +E+ T
Sbjct: 158 LTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQT 217
Query: 263 ILENYGSCVQSDEVLGQ 279
+ + +QS ++L +
Sbjct: 218 MQQQGVVRIQSTDLLNE 234
Score = 37.5 bits (87), Expect = 0.002
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 5 NSALLVIDVQNDFISG 20
NSAL+V+DVQN F G
Sbjct: 30 NSALVVVDVQNGFTPG 45
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces
cerevisiae} PDB: 2h0r_A
Length = 216
Score = 168 bits (428), Expect = 4e-52
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 84 VIEPINKLLDTV--NFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVV 141
+I PI+ L+ +++ + + DWHPS H+SF N K ++ P TY +
Sbjct: 28 LINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKNHKDKE--------PYSTYTYHSPR 79
Query: 142 FDGDTPIRQRLWPRHCVQDSWGAELHKDLK---VVDNAIKVYKGTDPEVDSYSVFWDNKK 198
D+ LWP HCV+++WG++L + V + V KG + + YS F D
Sbjct: 80 PGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWN 139
Query: 199 LKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMD 254
T + K LE +VY+ G+A + V A+AI A +GY+T ++ D R + D
Sbjct: 140 FHKTDMNKYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDYTRPISDD 195
Score = 35.2 bits (81), Expect = 0.012
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 7 ALLVIDVQNDFIS--GTL---NLSQCSAKQNGLQALFRNDKGKIYALKD 50
L+V+D+QNDFIS G+L + + L D +I +D
Sbjct: 3 TLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRD 51
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase,
resistance to pyrazinamide, hydrolase; 2.20A
{Mycobacterium tuberculosis} PDB: 3pl1_A
Length = 186
Score = 159 bits (404), Expect = 9e-49
Identities = 46/191 (24%), Positives = 65/191 (34%), Gaps = 33/191 (17%)
Query: 84 VIEPINKLLDT-VNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVF 142
+ I+ L +++ V + D+H F
Sbjct: 27 LARAISDYLAEAADYHHVVATKDFHIDPGDHF---------------------------- 58
Query: 143 DGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGT 202
TP WP HCV + GA+ H L YKG +YS F + GT
Sbjct: 59 -SGTPDYSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGAY--TGAYSGFEGVDE-NGT 114
Query: 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNT 262
L L + V +V V G+A D CV +A DA+ G T ++ D GV D
Sbjct: 115 PLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEE 174
Query: 263 ILENYGSCVQS 273
+ V S
Sbjct: 175 MRTASVELVCS 185
Score = 36.0 bits (84), Expect = 0.005
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 7 ALLVIDVQNDFISG 20
AL+++DVQNDF G
Sbjct: 3 ALIIVDVQNDFCEG 16
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase;
pyrazinamide, tuberculosis, PZA resistance, drug
resistance, metal ION catalysis; 1.65A {Pyrococcus
horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Length = 180
Score = 150 bits (381), Expect = 2e-45
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 42/182 (23%)
Query: 84 VIEPINKLLDTV--NFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVV 141
+I +N+ + + + DWHP NH+SF +
Sbjct: 29 IIPKVNEYIRKFKEKGALIVATRDWHPENHISFRERGGP--------------------- 67
Query: 142 FDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKG 201
WPRHCVQ++ GAE DL ++A+ + K T+P+ ++YS F G
Sbjct: 68 -----------WPRHCVQNTPGAEFVVDLP--EDAVIISKATEPDKEAYSGFE------G 108
Query: 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRN 261
T LAK L V VY+CG+A + CV A+A+DA+ G+ L+ D +G+ +D ER
Sbjct: 109 TDLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALE 168
Query: 262 TI 263
+
Sbjct: 169 EM 170
Score = 38.3 bits (90), Expect = 8e-04
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 4 PNSALLVIDVQNDFISG 20
P AL+V+D+Q DF+ G
Sbjct: 2 PEEALIVVDMQRDFMPG 18
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB:
3o90_A 3o91_A* 3o92_A* 3o93_A*
Length = 211
Score = 144 bits (365), Expect = 1e-42
Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 93/276 (33%)
Query: 5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQ 64
AL+ ID DF++ D GK+ A +
Sbjct: 22 TKALISIDYTEDFVA---------------------DSGKLTAGAPAQ------------ 48
Query: 65 DGLIDREEFAFCWNRWIKVVIEPINKLLDTV--NFNAVFYSLDWHPSNHVSFIDNIKLRK 122
+ + I+K+ + +F+++D H N
Sbjct: 49 ------------------AISDAISKVTRLAFERGDYIFFTIDAHEENDCFH-------- 82
Query: 123 IHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKG 182
PE +L+P H + + G L+ DL +
Sbjct: 83 --------PE-----------------SKLFPPHNLIGTSGRNLYGDLGIFYQEHGSDSR 117
Query: 183 -TDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRT 241
+ YS F GT L +L ++V+ V + G+ D+ V +AIDA +GY
Sbjct: 118 VFWMDKRHYSAFS------GTDLDIRLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDI 171
Query: 242 ILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVL 277
+++ + ++ + G+ + + +
Sbjct: 172 EIVKPAVASIWPENHQFALGHFKNTLGAKLVDENLN 207
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center
for structural genomics structure initiative; 2.30A
{Alkaliphilus metalliredigens}
Length = 204
Score = 124 bits (313), Expect = 5e-35
Identities = 46/286 (16%), Positives = 83/286 (29%), Gaps = 106/286 (37%)
Query: 5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQ 64
A+LVID+ NDF+ +K +
Sbjct: 7 KHAILVIDMLNDFVG---------------------EKAPLRCPGGET------------ 33
Query: 65 DGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNA-----VFYSLDWHPSNHVSFIDNIK 119
+I + K+ + V + + + H N F
Sbjct: 34 -------------------IIPDLQKIFEWVRGREGDDIHLVHIQEAHRKNDADF----- 69
Query: 120 LRKIHHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKV 179
R+ P H V+ +WG++ +L ++ V
Sbjct: 70 -------------------------------RVRPLHAVKGTWGSDFIPELYPQEDEYIV 98
Query: 180 YKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY 239
K +S F T L L+ + + V + G+ +VCV ++A DA+ Y
Sbjct: 99 QK------RRHSGFA------HTDLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALANAY 146
Query: 240 RTILIEDCCRGVDMDDMERTRNTILENYGSCVQSDEVLGQHENTRK 285
+ I + D + E N L + + D+ + EN
Sbjct: 147 KVITLSDGTASKTEEMHEYGLN-DLSIFTKVMTVDQYIQAWENDED 191
>3hu5_A Isochorismatase family protein; structural genomics, protein
structure INI NEW YORK structural genomix research
consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Length = 204
Score = 112 bits (282), Expect = 2e-30
Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 49/203 (24%)
Query: 84 VIEPINKLLDTVNFNA----VFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDT 139
+ I LL A V + + H ++ +
Sbjct: 35 TVPVIAGLLAK--ARAEGWMVLHVVRAHRADGSDAEKS---------------------- 70
Query: 140 VVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKL 199
CV + GAE+ L+ + K +S F
Sbjct: 71 ------REHLFLEGGGLCVAGTPGAEIVAGLEPASGETVLVKTR------FSAFM----- 113
Query: 200 KGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERT 259
GT L + V + V G Y C+ +A+DA + Y +++ D C E
Sbjct: 114 -GTECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESN 172
Query: 260 RNTILENYGSCV---QSDEVLGQ 279
N + +CV D+VL +
Sbjct: 173 INDMRAMGITCVPLTALDDVLAR 195
Score = 34.6 bits (80), Expect = 0.020
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 5 NSALLVIDVQNDFIS 19
AL +ID+QNDF+
Sbjct: 8 TVALAIIDMQNDFVL 22
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics,
protein structure initiative, midwest center for
structural genomics; 2.35A {Thermoplasma acidophilum}
Length = 182
Score = 110 bits (276), Expect = 1e-29
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 58/200 (29%)
Query: 84 VIEPINKLLDTVNFNA----VFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDT 139
+ P K+++T F V Y D H +
Sbjct: 27 TVGPARKVIET--FRRSGLPVVYVNDSHYPDDPEI------------------------- 59
Query: 140 VVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKL 199
R+W RH ++ G+E+ +++ + K +YS F+
Sbjct: 60 -----------RIWGRHSMKGDDGSEVIDEIRPSAGDYVLEK------HAYSGFY----- 97
Query: 200 KGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERT 259
GT+L L A + V + GL D+CV +A DA+ YR I++ED + +
Sbjct: 98 -GTNLDMILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAARIDPNWK-- 154
Query: 260 RNTILENYGSCVQ-SDEVLG 278
+ YG+ V+ SDE+ G
Sbjct: 155 -DYFTRVYGATVKRSDEIEG 173
Score = 36.0 bits (84), Expect = 0.006
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 6 SALLVIDVQNDFISGTL 22
AL+V+D+ N+FI G L
Sbjct: 3 PALVVVDMVNEFIHGRL 19
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A
{Escherichia coli}
Length = 287
Score = 99.4 bits (248), Expect = 1e-24
Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 50/200 (25%)
Query: 84 VIEPINKLLDTVNFNA----VFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDT 139
VI I L D V+Y+ +
Sbjct: 58 VIANIAALRDY--CKQHNIPVYYTAQPKEQS----------------------------- 86
Query: 140 VVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKL 199
D D + +W + ++ L + + K YS F
Sbjct: 87 ---DEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTVLVKWR------YSAFH----- 132
Query: 200 KGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERT 259
+ L + L+ + + G+ + +A DA + ++ D D+ +
Sbjct: 133 -RSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMS 191
Query: 260 RNTILENYGSCVQSDEVLGQ 279
+ G V ++E+L
Sbjct: 192 LKYVAGRSGRVVMTEELLPA 211
Score = 33.9 bits (78), Expect = 0.048
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 5 NSALLVIDVQNDFISG 20
+ALL+ D+Q+ F+S
Sbjct: 32 RAALLIHDMQDYFVSF 47
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme,
phenazine pathway, hydrolase; HET: BOG; 1.50A
{Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A*
3r77_A*
Length = 207
Score = 94.7 bits (236), Expect = 1e-23
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 143 DGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGT 202
+ + + W E+ ++L + + K YS F+ +
Sbjct: 84 EEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWR------YSAFF------HS 131
Query: 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNT 262
L +++ A + +CG+ V V S +DA + + L+ D
Sbjct: 132 DLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEY 191
Query: 263 ILENYGSCVQSDEVL 277
V +DEVL
Sbjct: 192 AASRCAMVVTTDEVL 206
Score = 33.8 bits (78), Expect = 0.035
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 5 NSALLVIDVQNDFISG 20
+ LLV D+Q F+
Sbjct: 31 RAVLLVHDMQRYFLRP 46
>3kl2_A Putative isochorismatase; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.30A {Streptomyces
avermitilis}
Length = 226
Score = 93.2 bits (232), Expect = 6e-23
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 149 RQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDS---YSVFWDNKKLKGTSLA 205
+ + + V+ +WGA + +L V+ D ++ F T+L
Sbjct: 98 KGVVDGKAFVKGTWGAAIVDELAPVNG--------DIVIEGKRGLDTFA------STNLD 143
Query: 206 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILE 265
L +K V + + G + CV ++ G+R I + DC ++ +
Sbjct: 144 FILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFP 203
Query: 266 NYGSCVQSDEVL 277
+ + S +V+
Sbjct: 204 MFSVPMTSADVI 215
Score = 33.9 bits (78), Expect = 0.037
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 5 NSALLVIDVQNDFIS 19
+A+++I+ QN+F S
Sbjct: 25 RTAIVLIEYQNEFTS 39
>3txy_A Isochorismatase family protein family; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia thailandensis}
Length = 199
Score = 89.6 bits (223), Expect = 6e-22
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 147 PIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAK 206
++ + P D + L V + V K + F GT L
Sbjct: 72 KVKTDVPPSPPNLDPEWSAFAPALGVQPLDVVVTKHQ------WGAFT------GTDLDV 119
Query: 207 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILEN 266
QL + +TD+ + G+A ++ V ++A +A Y +++ D D I
Sbjct: 120 QLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVSTWSTDAQTFALTQIFPK 179
Query: 267 YGSCVQSDEVL 277
G + +V
Sbjct: 180 LGQVATAADVE 190
Score = 36.8 bits (86), Expect = 0.003
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 4 PNSALLVIDVQNDFISG 20
P AL+ ID+QN +
Sbjct: 12 PTVALVAIDLQNGIVVL 28
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides);
2.00A {Arthrobacter SP} SCOP: c.33.1.3
Length = 264
Score = 89.8 bits (223), Expect = 2e-21
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 149 RQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQL 208
++ DS+ A++ + D + + K S F GT+L L
Sbjct: 112 YSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNR------ASAFP------GTNLELFL 159
Query: 209 EAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYG 268
+ ++ + V G CV + DAI G+R I+ + ++ I +G
Sbjct: 160 TSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFG 219
Query: 269 SCVQSDEVL 277
+D V+
Sbjct: 220 DVESTDSVV 228
Score = 32.8 bits (75), Expect = 0.088
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 5 NSALLVIDVQNDFIS 19
A++ ID+ N +
Sbjct: 44 RPAVIHIDLANAWTQ 58
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A
{Bordetella bronchiseptica} PDB: 3uao_A
Length = 236
Score = 88.1 bits (219), Expect = 6e-21
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 143 DGDTPIRQRLWP--RHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLK 200
D D I P + + + + L V K T S F+
Sbjct: 99 DADGNIFSIKVPGMLTLKEHAPASAIVPQLAPQAGEYVVRKST------PSAFY------ 146
Query: 201 GTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTR 260
GT LA L + V + V G CV AS +DA++ G+R +++ DC + E
Sbjct: 147 GTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGFRPLVLSDCVGDRALGPHEANL 206
Query: 261 NTILENYGSCVQSDEVLGQ 279
+ + Y + + DE L +
Sbjct: 207 FDMRQKYAAVMTHDEALAK 225
Score = 32.3 bits (74), Expect = 0.11
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 5 NSALLVIDVQNDFISG 20
LL++D N F
Sbjct: 44 PYGLLIVDFVNGFADP 59
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure
initiative, CY hydrolase; 1.60A {Pseudomonas syringae
PV}
Length = 233
Score = 83.2 bits (206), Expect = 4e-19
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 26/151 (17%)
Query: 143 DGDTPIRQRLWP---RHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKL 199
DT + L+P + + E+ + L + + V K YS F
Sbjct: 78 GSDTGRMRDLYPNVDQILARHDPDVEVIEALAPQSDDVIVDKLF------YSGFH----- 126
Query: 200 KGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERT 259
T L L A+ V + VCG +VC + D + Y+ I + D +D D+
Sbjct: 127 -NTDLDTVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALSDANAAMDYPDVGFG 185
Query: 260 R-----------NTILENYGSCVQSDEVLGQ 279
TI +G + EV+ +
Sbjct: 186 AVSAADVQRISLTTIAYEFGEVTTTAEVIRR 216
Score = 34.3 bits (79), Expect = 0.028
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 5 NSALLVIDVQNDFIS 19
+A++V+D+Q F
Sbjct: 22 RTAVIVVDMQKVFCE 36
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel
beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET
structural genomics; 1.30A {Escherichia coli} SCOP:
c.33.1.3
Length = 199
Score = 79.6 bits (197), Expect = 4e-18
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 153 WPRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKK 212
V + L D+ I++ K + F+ GT L QL +
Sbjct: 84 PSPAKVLPENWWQHPAALGTTDSDIEIIKRQ------WGAFY------GTDLELQLRRRG 131
Query: 213 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQ 272
+ + +CG++ ++ V ++A +A +G+ ++ ED C + + N I
Sbjct: 132 IDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRS 191
Query: 273 SDEVL 277
+E+L
Sbjct: 192 VEEIL 196
Score = 33.4 bits (77), Expect = 0.043
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 5 NSALLVIDVQNDFISG 20
+AL+VID+Q +
Sbjct: 19 TTALVVIDLQEGILPF 34
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics,
joint center for struc genomics, JCSG, protein structure
initiative; 1.22A {Burkholderia xenovorans}
Length = 211
Score = 77.4 bits (191), Expect = 3e-17
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 22/132 (16%)
Query: 156 HCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTD 215
+ S GAELH + V K S F GT LA L A+++
Sbjct: 64 LFARGSNGAELHPVVSERARDHYVEKSL------PSAFT------GTDLAGWLAARQIDT 111
Query: 216 VYVCGLAYDVCVGASAIDAITIGYRTILIEDCC---------RGVDMDDMERTRNTILEN 266
+ V G C ++ A+ G + D +++ R + +L++
Sbjct: 112 LTVTGYMTHNCDASTINHAVHSGLAVEFLHDATGSVPYENSAGFASAEEIHRVFSVVLQS 171
Query: 267 -YGSCVQSDEVL 277
+ + +DE +
Sbjct: 172 RFAAVASTDEWI 183
Score = 38.9 bits (91), Expect = 7e-04
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 4 PNSALLVIDVQNDFISGTL-----NLSQCSAKQNGLQALFR 39
P AL+VIDVQN++++G L ++ A R
Sbjct: 5 PRRALIVIDVQNEYVTGDLPIEYPDVQSSLANIARAMDAAR 45
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.75A {Oleispira antarctica}
Length = 190
Score = 74.6 bits (184), Expect = 2e-16
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 22/134 (16%)
Query: 156 HCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTD 215
+ S GA++H + + V K + F T L K L+ +
Sbjct: 68 FFLPGSDGAKIHPSVAAQEGEAVVLKHQ------INSFR------DTDLKKVLDDAGIKK 115
Query: 216 VYVCGLAYDVCVGASAIDAITIGYRTILIEDCC---------RGVDMDDMERTRNTILE- 265
+ + G + + A A +GY + D C V + + L
Sbjct: 116 LVIVGAMTHMAIDAVTRAAEDLGYECAVAHDACATLDLEFNGITVPAAQVHAAFMSALSF 175
Query: 266 NYGSCVQSDEVLGQ 279
Y + +DE++
Sbjct: 176 AYANVASADELIAG 189
Score = 35.7 bits (83), Expect = 0.007
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 3 RPNSALLVIDVQNDFISGTL-------NLSQCSAKQNGLQALFR 39
+ALL+ID QND+ S + + L A FR
Sbjct: 5 ENTTALLLIDFQNDYFSTYNGAKNPLVGTEAAAEQGAKLLAKFR 48
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein
structure initiative, MIDW center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis}
Length = 167
Score = 65.3 bits (160), Expect = 3e-13
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 160 DSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDVYVC 219
S +L + L + K + F+ T+L L + V + +
Sbjct: 60 GSDSWQLFEKLDTQPTDFFIRK------THANAFY------QTNLNDLLTEQAVQTLEIA 107
Query: 220 GLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDM 256
G+ + CV + A +GY ++ +D +
Sbjct: 108 GVQTEFCVDTTIRMAHGLGYTCLMTPKTTSTLDNGHL 144
Score = 39.9 bits (94), Expect = 2e-04
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 5 NSALLVIDVQNDFISGTL---NLSQCSAKQNGLQALFR 39
N ALL+ID Q S T L K N A++R
Sbjct: 4 NRALLLIDFQKGIESPTQQLYRLPAVLDKVNQRIAVYR 41
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics,
joint center FO structural genomics, JCSG; HET: MSE;
1.06A {Chromobacterium violaceum}
Length = 198
Score = 64.6 bits (158), Expect = 1e-12
Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 23/132 (17%)
Query: 157 CVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEAKKVTDV 216
G +++ + K T S F GT L L A ++
Sbjct: 69 YRPGQPGHAFKPEVEPRPGETVIAKQT------NSAFI------GTGLEALLRANGWLEL 116
Query: 217 YVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDM-----------ERTRNTILE 265
V G++ V A+ A +G+ L ED C D D + +
Sbjct: 117 VVAGVSTSNSVEATVRMAGNLGFAVCLAEDGCFTFDKTDWHGRRRSADEVHAMSLANLDG 176
Query: 266 NYGSCVQSDEVL 277
Y S ++L
Sbjct: 177 EYCRVCGSADIL 188
Score = 40.4 bits (95), Expect = 2e-04
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 3 RPNSALLVIDVQNDFISGTL---NLSQCSAKQNGLQALFR 39
LL+ID+Q + N Q GL +R
Sbjct: 10 SDKPLLLLIDMQQAVDDPSWGPRNHPQAEQACAGLLQAWR 49
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer
alpha-beta-alpha SA topology, ENTB homolog, cshase
homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Length = 208
Score = 49.4 bits (118), Expect = 2e-07
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 202 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDME 257
K ++A + + G+ +VCV A+ AI G+ ++ D +
Sbjct: 94 EDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRH 149
Score = 30.9 bits (70), Expect = 0.29
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 1 IVRPNSALLVIDVQNDFISGTLNLSQCSAKQN 32
+ + ++A+L++D Q +S ++ K N
Sbjct: 8 LDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNN 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 8e-07
Identities = 50/371 (13%), Positives = 94/371 (25%), Gaps = 138/371 (37%)
Query: 4 PNSALLVID-VQN-------DFISGTLNLSQCSAKQNGLQALFRND---KGKIYALKDNE 52
N LLV+ VQN + L ++ + L A L +E
Sbjct: 244 ENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 53 LEETFA------VFDLNQD---------GLIDRE--EFAFCWNRWIKVVIEPINKLLDTV 95
++ DL ++ +I + W+ W V + + +++
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 96 NFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTY--DTVVFDGDTPIR---- 149
S ++ ++ P + + VF I
Sbjct: 361 -----------------SSLNVLE-----------PAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 150 QRLW---PRHCVQD------------SWG---------------------AELHKDLKVV 173
+W + V LH+ +V
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIV 450
Query: 174 D--NAIKVYKGTD---PEVDSYSVFWDNKKLKGTSLAKQ-------------LEAKKVTD 215
D N K + D P +D Y LK ++ LE K
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---- 506
Query: 216 VYVCGLAYDVCVGASAIDAIT--IGYRTILIEDCCRGVDMDDMERTRNTILENYGSCVQS 273
+ + S ++ + Y+ + ++ ER N IL+
Sbjct: 507 --IRHDSTAWNASGSILNTLQQLKFYKPYICDND------PKYERLVNAILDFLPKI--- 555
Query: 274 DEVLGQHENTR 284
+E L + T
Sbjct: 556 EENLICSKYTD 566
Score = 37.5 bits (86), Expect = 0.005
Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 69/312 (22%)
Query: 9 LVIDVQNDFISGTLNLSQCSAKQNGLQALFRNDKGK-IYALKDNELEETFAVFDLNQD-- 65
++ ++ F+ N C Q+ +++ ++ I KD T +F
Sbjct: 21 ILSVFEDAFVD---NF-DCKDVQDMPKSILSKEEIDHIIMSKDAV-SGTLRLFWTLLSKQ 75
Query: 66 --------GLIDREEFAFCWNRWIKVVIEPINKLLDTVNF----NAVFYSLDWHPSNHVS 113
+ R + F + E + T + + ++ +VS
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 114 FIDNI-KLRKIHHTSTIQPEDAQTYDTVVFDG---------------DTPIRQRL----- 152
+ KLR+ ++P V+ DG ++ ++
Sbjct: 133 RLQPYLKLRQ--ALLELRPAKN-----VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 153 W--PRHCVQDSWGAELHKDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLAKQLEA 210
W ++C + V++ K+ DP S S N KL+ S+ +L
Sbjct: 186 WLNLKNC---------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 211 KKVTDVYVCGLAY--DVCVGASAIDAITIGYRTILI-EDCCRGV-DMDDMERTRNTILEN 266
+ Y L +V A A +A + + +L + V D T + L++
Sbjct: 237 LLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDH 293
Query: 267 YGSCVQSDEVLG 278
+ + DEV
Sbjct: 294 HSMTLTPDEVKS 305
Score = 32.9 bits (74), Expect = 0.13
Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 45/201 (22%)
Query: 108 PSNHVSFIDNIKLRKIHHT--STIQPEDAQTYDTVVFDGDTPIRQR--LW-----PRHCV 158
+F+DN + + S + E+ D ++ D W V
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEE---IDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 159 QDSWGAELHKDLKVVDNAIKV-YKGTDPEVDSYS-----VFWDNKKL---------KGTS 203
Q L + K + + IK + Y ++ DN+
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 204 LAKQL-EAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDMERTRNT 262
L + L E + +V + G+ G+ G +T + D C +
Sbjct: 140 LRQALLELRPAKNVLIDGVL-----GS--------G-KTWVALDVCL--SYKVQCKMDFK 183
Query: 263 IL-ENYGSCVQSDEVLGQHEN 282
I N +C + VL +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK 204
Score = 30.2 bits (67), Expect = 1.0
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 124 HHTSTIQPEDAQTYDTVVFDGDTPIRQRLWPRHCVQDSWGAELHKDLKVVDNAIKVYKGT 183
HH E Y ++ + + VQD + L K + +D+ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSK--EEIDH---IIMSK 58
Query: 184 DPEVDSYSVFWDNKKLKGTSLAKQ 207
D + +FW K + ++
Sbjct: 59 DAVSGTLRLFW-TLLSKQEEMVQK 81
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP; 2.00A {Trypanosoma cruzi}
Length = 204
Score = 45.3 bits (107), Expect = 6e-06
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 203 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDME 257
+ ++ +V V + G VC+ +A + + + ++ D C D
Sbjct: 100 QVMPLVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAVDGCGSQSQGDHC 154
Score = 30.6 bits (69), Expect = 0.41
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFR 39
+A D+Q F+ N + C N L
Sbjct: 20 KTAFFCCDIQEKFMGRIANSANCVFVANRFAGLHT 54
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 42.8 bits (101), Expect = 3e-05
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 52 ELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVN-FNAVFYSLDWHPSN 110
+++ D+ DG I RE++ R K+ K +T F V L P
Sbjct: 15 KMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGV 74
Query: 111 HVSFIDNIKL--RKIHHTSTIQPEDAQTYDTVVF-----DGD 145
+S + + + A +++ D D
Sbjct: 75 RISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKD 116
Score = 38.2 bits (89), Expect = 0.001
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D++ F D N++G I R+EF
Sbjct: 135 LTDDKAITCFNTLDFNKNGQISRDEF 160
Score = 34.7 bits (80), Expect = 0.016
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
+ + + D ++DG + EF
Sbjct: 99 MAVIQSLIMYDCIDTDKDGYVSLPEFK 125
Score = 28.9 bits (65), Expect = 1.3
Identities = 6/32 (18%), Positives = 7/32 (21%)
Query: 51 NELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
E L I EE A +
Sbjct: 59 QEFLRVADQLGLAPGVRISVEEAAVNATDSLL 90
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 34 LQALFR----NDKGKI-------------YALKDNELEETFAVFDLNQDGLIDREEF 73
+ALF+ N G + + L+ F D + +G ID+ EF
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural
genomics, PSI, protein structure initiative; 2.14A
{Caenorhabditis elegans}
Length = 199
Score = 39.8 bits (93), Expect = 3e-04
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 207 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGVDMDDME 257
+ KKV +V + G+ VCV + D + G ++ D D
Sbjct: 95 EDTLKKVQNVILVGIEAHVCVLQTTYDLLERGLNVHVVVDAVSSRSHTDRH 145
Score = 28.2 bits (63), Expect = 2.2
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 5 NSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFR 39
NSAL V D+Q F S + L R
Sbjct: 14 NSALFVCDLQEKFASNIKYFPEIITTSRRLIDAAR 48
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR
{Saccharopolyspora erythraea} SCOP: a.39.1.5
Length = 176
Score = 39.4 bits (92), Expect = 4e-04
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
A+ + L++ F +D + +G ++R +F +
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAE 38
Score = 36.3 bits (84), Expect = 0.004
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 35 QALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
+F + + ++ + D N DG I+ +EFA
Sbjct: 86 NLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA 125
Score = 35.9 bits (83), Expect = 0.006
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFA 74
+ E E F D N +G + +E
Sbjct: 129 TALGMSKAEAAEAFNQVDTNGNGELSLDELL 159
Score = 28.6 bits (64), Expect = 1.8
Identities = 7/62 (11%), Positives = 14/62 (22%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYS 103
+ + + DG + E+F I E + +
Sbjct: 51 TLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGM 110
Query: 104 LD 105
D
Sbjct: 111 CD 112
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 39.8 bits (93), Expect = 4e-04
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 51 NELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVN-FNAVFYSLDWHPS 109
+ L + F FDL+ DG ++ +E + +R ++V ++ + F P
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPV 95
Query: 110 NHVSFID 116
N + D
Sbjct: 96 NGLLRED 102
Score = 36.7 bits (85), Expect = 0.004
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEF 73
K + + F D ++ G ++R E
Sbjct: 155 KAFDVPQEAAYTFFEKADTDKSGKLERTEL 184
Score = 33.6 bits (77), Expect = 0.044
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEF 73
+L + V D + DG +D +E
Sbjct: 124 SLIALLSNSYYDVLDDDGDGTVDVDEL 150
Score = 30.2 bits (68), Expect = 0.59
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 51 NELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
+ + F + + RE++ + +
Sbjct: 81 DAVRVFFLHKGVEPVNGLLREDWVEANRVFAE 112
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 39.4 bits (92), Expect = 4e-04
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 15 NDFISGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
F+ L+ ++ K + + N+L F ++DL++DG I R E
Sbjct: 81 PGFVRV---LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEM 136
Score = 32.4 bits (74), Expect = 0.090
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L F D N+ G + R +
Sbjct: 30 RLHHRFRALDRNKKGYLSRMDL 51
Score = 30.5 bits (69), Expect = 0.45
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 GKIYALKDNEL-EETFAVFDLNQDGLIDREEF 73
+I AL N L + F + +D F
Sbjct: 52 QQIGALAVNPLGDRIIESFFPDGSQRVDFPGF 83
Score = 27.8 bits (62), Expect = 3.8
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 48 LKDNELE----ETFAVFDLNQDGLIDREEF 73
+ + +LE T D + DG + EF
Sbjct: 148 VTEEQLENIADRTVQEADEDGDGAVSFVEF 177
>1x9g_A Putative MAR1; structural genomics, protein structure initiative,
SGPP, PSI structural genomics of pathogenic protozoa
consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3
PDB: 1xn4_A
Length = 200
Score = 38.8 bits (90), Expect = 8e-04
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 181 KGTDPEVDSYSVFWDNKKLKGTSLAKQLEA-----KKVTDVYVCGLAYDVCVGASAIDAI 235
KG V ++ ++ T + + + V + V G+ C+ + D +
Sbjct: 70 KGLGRIVPEITLPKTAHLIEKTRFSCVVPQVEELLEDVDNAVVFGIEGHACILQTVADLL 129
Query: 236 TIGYRTILIEDCCRGVDMDDME 257
+ R L +D D +
Sbjct: 130 DMNKRVFLPKDGLGSQKKTDFK 151
Score = 31.0 bits (70), Expect = 0.30
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 3 RPNSALLVIDVQNDFISGTLNLSQCSAKQNGLQALFR 39
+ +A L +D+Q F N + C N L L
Sbjct: 18 KGKTAFLCVDLQEAFSKRIENFANCVFVANRLARLHE 54
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 36.3 bits (85), Expect = 8e-04
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
++ + F D++ +G ++ +EF
Sbjct: 34 FTQEDIVKFFEEIDVDGNGELNADEF 59
Score = 34.4 bits (80), Expect = 0.004
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ F FD N+DG + +EF
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEF 23
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 37.9 bits (89), Expect = 0.001
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 15 NDFISGTLNLSQCSAKQNGLQALFR----NDKGKI-----------YALKDNELEETFAV 59
+FI+ TL+L++ + + L A F + G I + ++D +EE
Sbjct: 83 KEFIAATLHLNKIEREDH-LFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRD 141
Query: 60 FDLNQDGLIDREEFA 74
D + DG ID EF
Sbjct: 142 VDQDNDGRIDYNEFV 156
Score = 30.9 bits (71), Expect = 0.27
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
L+E F + D ++ G I EE
Sbjct: 27 AGLKEMFNMIDADKSGQITFEE 48
Score = 28.6 bits (65), Expect = 1.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
LK++E+ + D++ G ID +EF
Sbjct: 60 LKESEILDLMQAADVDNSGTIDYKEF 85
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent
protein; HET: CZN; 1.60A {Aequorea victoria} SCOP:
a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 37.9 bits (88), Expect = 0.002
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 52 ELEETFAVFDLNQDGLIDREEFAFCWNRWI 81
+ F D+N +G I +E + + +
Sbjct: 17 RHKHMFNFLDVNHNGKISLDEMVYKASDIV 46
Score = 37.1 bits (86), Expect = 0.003
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ EETF V D+++ G +D +E
Sbjct: 142 QSSEDCEETFRVCDIDESGQLDVDEM 167
Score = 32.5 bits (74), Expect = 0.083
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L + F + D +Q+G I +E+
Sbjct: 106 LIRIWGDALFDIVDKDQNGAITLDEW 131
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 36.3 bits (84), Expect = 0.002
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 30 KQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPIN 89
+ + + + + + + F FD + I REEF + +
Sbjct: 4 MATADRDILARLHKAVTS-HYHAITQEFENFDTMKTNTISREEF--------RAICNRRV 54
Query: 90 KLLDTVNFNAVFYSLDWHPSNHVSFID 116
++L F+ ++ + + + + D
Sbjct: 55 QILTDEQFDRLWNEMPVNAKGRLKYPD 81
Score = 34.4 bits (79), Expect = 0.008
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D + + + +N G + +F
Sbjct: 57 LTDEQFDRLWNEMPVNAKGRLKYPDF 82
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 35.3 bits (82), Expect = 0.002
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
ELE F D N DG + E
Sbjct: 8 ELEAAFKKLDANGDGYVTALE 28
Score = 31.4 bits (72), Expect = 0.061
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ + D N DG I +EEF
Sbjct: 48 KEASAKLIKMADKNSDGKISKEEF 71
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 37.0 bits (86), Expect = 0.002
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
+ + F FD + +G IDR +F+ +
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLA 35
Score = 36.6 bits (85), Expect = 0.003
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFA 74
+ + ++ + A D + DG + E
Sbjct: 125 TAFGVPEDLARQAAAALDTDGDGKVGETEIV 155
Score = 35.1 bits (81), Expect = 0.010
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFA 74
L V D + DG + + A
Sbjct: 97 RPFLHAALGVADTDGDGAVTVADTA 121
Score = 30.9 bits (70), Expect = 0.26
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
+Y + + + D + D I REEF + ++
Sbjct: 48 ALYGGAEALWQGLAGIADRDGDQRITREEFVTGAVKRLR 86
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
+AL ++ + E F D ++DG I +EFA
Sbjct: 49 FRALCTE-----LRVRPADAEAVFQRLDADRDGAITFQEFA 84
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L FA D N+ G ++REEF
Sbjct: 28 RLRSVFAACDANRSGRLEREEF 49
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 36.6 bits (85), Expect = 0.004
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFA 74
+ L +F D N DGL+ EEF
Sbjct: 121 GMLGLDKTMAPASFDAIDTNNDGLLSLEEFV 151
Score = 36.2 bits (84), Expect = 0.004
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 52 ELEETFAVFDLNQDGLIDREEFAFCWNRWIKVV---IEPINKLLDTVNFNAVFYSLDWHP 108
+++ F D ++DG I R +F R+ K E L+D++ +
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAG 66
Query: 109 SNHVSF 114
+
Sbjct: 67 GKGIDE 72
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 35.3 bits (82), Expect = 0.004
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
LQ +N L E + A D + DG I EEF
Sbjct: 64 LQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQ 104
Score = 31.1 bits (71), Expect = 0.11
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
++++ F + D ++ G I+ EE
Sbjct: 43 QIKKVFGILDQDKSGFIEEEE 63
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 36.7 bits (85), Expect = 0.004
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFAFCW 77
Y + ++ + F ++ RE FA W
Sbjct: 136 MSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLW 169
Score = 31.7 bits (72), Expect = 0.17
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 48 LKDNELEETF-AVFDLNQDGLIDREEFAFCWNRWIKV 83
+ N++ F +D N DG+I+ ++F + +
Sbjct: 9 FQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNL 45
Score = 31.3 bits (71), Expect = 0.24
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKG-----KIYALKDNELEETFAVFDLNQDGLIDREEF 73
G + + L + A + D N+D + +EE+
Sbjct: 27 DGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW 86
Query: 74 AFCWNRWIKVVIEP 87
W +K V +
Sbjct: 87 LKMWAECVKSVEKG 100
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 36.1 bits (84), Expect = 0.005
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 13/50 (26%)
Query: 37 LFRNDKGKIYA-------------LKDNELEETFAVFDLNQDGLIDREEF 73
LF GK +E+++ + ++ +GLID ++F
Sbjct: 134 LFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKF 183
Score = 32.3 bits (74), Expect = 0.10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E F + D ++DG I + +
Sbjct: 57 QEFKEAFQLIDQDKDGFISKND 78
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 36.4 bits (84), Expect = 0.006
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 46 YALKDNELEETFAVFDLNQDGLIDREEF 73
Y EL F D + + L+D EEF
Sbjct: 125 YIYDFFELTVMFDEIDASGNMLVDEEEF 152
Score = 32.9 bits (75), Expect = 0.069
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 19/77 (24%)
Query: 16 DFISGTLNLSQCSAKQNGLQALFR----NDKGKI--------------YALKDNELEETF 57
+F+ L L L +F + + + K + F
Sbjct: 115 EFLEFRLMLCYIYDFFE-LTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALF 173
Query: 58 AVFDLNQDGLIDREEFA 74
D N G + +EFA
Sbjct: 174 KELDKNGTGSVTFDEFA 190
Score = 29.1 bits (65), Expect = 1.3
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
E F FD N+ G + +E
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEV 70
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 36.1 bits (84), Expect = 0.006
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 15 NDFISGTLNLSQCSAKQNGLQALFR----NDKGKI-----------YALKDNELEETFAV 59
++F++ ++ +++ L A F+ + GKI + D +
Sbjct: 107 SEFVTVCMDKQLLLSRER-LLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQE 165
Query: 60 FDLNQDGLIDREEF 73
D N DG +D EEF
Sbjct: 166 CDKNNDGEVDFEEF 179
Score = 32.6 bits (75), Expect = 0.080
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
EL + F D N DG +DR+E
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKE 61
Score = 29.9 bits (68), Expect = 0.67
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 11 IDVQNDFISGTLN---LSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGL 67
+D D G L+ L + K + +D + + E++ D +++G
Sbjct: 49 LDNNGD---GQLDRKELIEGYRKLMQWKGDTVSDLD--SSQIEAEVDHILQSVDFDRNGY 103
Query: 68 IDREEF 73
I+ EF
Sbjct: 104 IEYSEF 109
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 36.1 bits (83), Expect = 0.006
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFCWNRWI 81
L+ ++ + V D + + R +
Sbjct: 136 LQCADVPAVYNVITDGGKVTFDLNRYKELYYRLL 169
Score = 31.0 bits (70), Expect = 0.25
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 48 LKDNELEETFAVF-DLNQDGLIDREEFAFCWNRWIKVVIEPIN 89
+ +++ TF F D+N DG I +F R+ +V ++
Sbjct: 5 FQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLS 47
Score = 29.1 bits (65), Expect = 1.1
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 44 KIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNF-NAVFY 102
+ A ++E + D+N+D ++ EE+ W + I + N +F
Sbjct: 53 SMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFK 112
Query: 103 SLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQT-YDTVVFDGD 145
+D + +D + + +Q D Y+ + G
Sbjct: 113 GMD---VSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGK 153
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 33.7 bits (78), Expect = 0.007
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
+++E F FD N DG I E
Sbjct: 3 DDMERIFKRFDTNGDGKISLSE 24
Score = 29.5 bits (67), Expect = 0.23
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+E++ A D + DG ID EF
Sbjct: 36 SADEVQRMMAEIDTDGDGFIDFNEF 60
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 34.7 bits (80), Expect = 0.008
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
+E + FDLN +G ID
Sbjct: 33 GFKEKYMEFDLNGNGDIDIMS 53
Score = 26.6 bits (59), Expect = 4.9
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
EL++ +F
Sbjct: 65 KTHLELKKLIGEVSSGSGETFSYPDF 90
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 35.7 bits (83), Expect = 0.008
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 15 NDFISGTLNLSQCSAKQNGLQALFR----NDKGKI-----------YALKDNELEETFAV 59
+FI+ T++L++ ++N L + F + G I + L D +++
Sbjct: 66 GEFIAATVHLNKLEREEN-LVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKE 124
Query: 60 FDLNQDGLIDREEFA 74
D + DG ID EFA
Sbjct: 125 IDQDNDGQIDYGEFA 139
Score = 30.3 bits (69), Expect = 0.41
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
L+E F + D + G I +E
Sbjct: 10 GGLKELFKMIDTDNSGTITFDE 31
Score = 28.0 bits (63), Expect = 2.6
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 41 DKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
G+ K L + + D + +I+
Sbjct: 150 GIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 182
Score = 26.8 bits (60), Expect = 6.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L ++E+++ D+++ G ID EF
Sbjct: 43 LMESEIKDLMDAADIDKSGTIDYGEF 68
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 35.6 bits (83), Expect = 0.008
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 20/79 (25%)
Query: 15 NDFISGTLNLSQCSAKQNGLQALFR----NDKGKI---------------YALKDNELEE 55
DF++ T++ K+ F+ + GKI L D ++
Sbjct: 113 TDFLAATIDKQTYLKKEV-CLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDS 171
Query: 56 TFAVFDLNQDGLIDREEFA 74
DLN DG ID EF
Sbjct: 172 LLQEVDLNGDGEIDFHEFM 190
Score = 31.8 bits (73), Expect = 0.17
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
N L F D++ G + +E
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEI 79
Score = 28.3 bits (64), Expect = 2.1
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 46 YALKDNELEETFAVFDLNQDGLIDREEF 73
Y ++ + D N G I +F
Sbjct: 88 YQKIPPDIHQVLRDIDSNASGQIHYTDF 115
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 36.2 bits (84), Expect = 0.009
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 21/84 (25%)
Query: 11 IDVQND-------FISGTLNLSQCSAKQNGLQALFRNDK---GKI-----------YALK 49
+D + F++ ++ +++ +A D GKI +
Sbjct: 391 VDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVD 450
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ + D N DG +D +EF
Sbjct: 451 SETWKSVLSEVDKNNDGEVDFDEF 474
Score = 33.9 bits (78), Expect = 0.057
Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 11 IDVQNDFISGTLNLSQ-CSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLID 69
+D D G L+ ++ + ++ ++ + ++E+++ D +++G I+
Sbjct: 344 MDKNGD---GQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE 400
Query: 70 REEF-AFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKI 123
EF +R LL F D S++ I + +L I
Sbjct: 401 YSEFVTVAMDR---------KTLLSRERLERAFRMFD---SDNSGKISSTELATI 443
Score = 29.3 bits (66), Expect = 1.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
EL F D N DG +DR E
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAEL 357
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 35.8 bits (83), Expect = 0.012
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 23/85 (27%)
Query: 11 IDVQND-------FISGTLNLSQCSAKQNGLQALFR----NDKGKI-----------YAL 48
D + F++ ++ ++ L++ F+ + GKI L
Sbjct: 399 ADFDRNGYIDYSEFVTVAMDRKS-LLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHL 457
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+ +E + D N DG +D EEF
Sbjct: 458 ESKTWKEMISGIDSNNDGDVDFEEF 482
Score = 31.2 bits (71), Expect = 0.35
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 20/115 (17%)
Query: 11 IDVQNDFISGTLNLSQCSAKQNGLQALFRND-KGKIYALKDNELEETFAVFDLNQDGLID 69
ID D G L+ + +G L + ++E++ D +++G ID
Sbjct: 355 IDKNGD---GQLDRQEL---IDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYID 408
Query: 70 REEF-AFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKI 123
EF +R LL + F D + I +L +
Sbjct: 409 YSEFVTVAMDR---------KSLLSKDKLESAFQKFD---QDGNGKISVDELASV 451
Score = 29.7 bits (67), Expect = 1.1
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 51 NELEETFAVFDLNQDGLIDREEF---------AFCWNRWIKVVIEPINKLLDTVNFN 98
EL + F D N DG +DR+E + + ++ +L +F+
Sbjct: 346 KELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD 402
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 35.6 bits (82), Expect = 0.012
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
L F D N +G + R+EF
Sbjct: 188 AALVADFRKIDTNSNGTLSRKEF 210
Score = 32.9 bits (75), Expect = 0.091
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L L +A D ++ G + +EE
Sbjct: 250 LCLLVLRILYAFADFDKSGQLSKEEV 275
Score = 32.9 bits (75), Expect = 0.091
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 51 NELEETFAVFDLNQDGLIDREEFAFCWNR-WIKVVIEPINKLLDTVNFN 98
N L + F ++ G ++ + + P+ KL V +
Sbjct: 122 NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVEND 170
Score = 29.8 bits (67), Expect = 0.94
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
+ E F+V D++ + +EF
Sbjct: 289 RKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMFH 321
Score = 29.4 bits (66), Expect = 1.1
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ + L++ F + + + G +
Sbjct: 155 IPEGPLKKLFVMVENDTKGRMSYITL 180
Score = 28.2 bits (63), Expect = 3.3
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFA 74
+ + F D ++ + E+
Sbjct: 222 KSVQDALFRYADEDESDDVGFSEYV 246
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 34.9 bits (81), Expect = 0.014
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L + F VFD++ DG I E
Sbjct: 119 LSKKLIYCAFRVFDVDNDGEITTAEL 144
Score = 32.6 bits (75), Expect = 0.082
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
+L+ TF V D + G I +E+
Sbjct: 52 EKLKSTFLVLDEDGKGYITKEQL 74
Score = 31.1 bits (71), Expect = 0.26
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 34 LQALFRN--DKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
L + N KG I N ++ D N DG ID EF
Sbjct: 144 LAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEF 185
Score = 26.8 bits (60), Expect = 7.3
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ D + G ID EF
Sbjct: 88 NFDLLLDQIDSDGSGKIDYTEF 109
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 34.4 bits (80), Expect = 0.014
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D EL FDL+ DG I+ EF
Sbjct: 129 LTDEELRAMIEEFDLDGDGEINENEF 154
Score = 31.4 bits (72), Expect = 0.15
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ E F++FD+N DG +D E
Sbjct: 24 EIYEAFSLFDMNNDGFLDYHEL 45
Score = 30.6 bits (70), Expect = 0.33
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E++ F +FD + G I +
Sbjct: 97 EIKRAFQLFDDDHTGKISIKNL 118
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 34.5 bits (80), Expect = 0.015
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
K+ +L F ++D+++DG I E
Sbjct: 73 KEQKLRFAFRIYDMDKDGYISNGEL 97
Score = 31.0 bits (71), Expect = 0.21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L + F DL+ G + EEF
Sbjct: 7 RLGKRFKKLDLDNSGSLSVEEF 28
Score = 29.1 bits (66), Expect = 0.96
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 48 LKDNELE----ETFAVFDLNQDGLIDREEFA 74
LKD +L+ +T D + DG I EEF
Sbjct: 109 LKDTQLQQIVDKTIINADKDGDGRISFEEFC 139
Score = 28.0 bits (63), Expect = 2.3
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 GKIYALKDN-ELEETFAVFDLNQDGLIDREEF 73
+ L+ N ++ +FD + +G +D +EF
Sbjct: 29 MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEF 60
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 34.0 bits (79), Expect = 0.017
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 49 KDNELEETFAVFDLNQDGLIDREE 72
L+ + + D++ DG + +EE
Sbjct: 73 DKIGLKVLYKLMDVDGDGKLTKEE 96
Score = 31.3 bits (72), Expect = 0.15
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 53 LEETFAVFDLNQDGLIDREEFA 74
E F D+N DG + EE
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVK 23
Score = 29.4 bits (67), Expect = 0.65
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFA 74
++ E D N DG I EEF
Sbjct: 106 IEKVAEQVMKADANGDGYITLEEFL 130
Score = 29.4 bits (67), Expect = 0.71
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 34 LQALFRN-DK---GKI-------------YALKDNELEETFAVFDLNQDGLIDREEF 73
+ALF+ D G + + L+ F D + +G ID+ EF
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 34.8 bits (80), Expect = 0.018
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+ +L+ F ++D + +G ID+ E
Sbjct: 91 MEQKLKWYFKLYDADGNGSIDKNEL 115
Score = 32.1 bits (73), Expect = 0.13
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 25/87 (28%)
Query: 10 VIDVQNDFISGTLNLSQCSAKQNGLQALFR----NDKGKI------------YALKDNE- 52
+D +FI+ + Q +Q L+ F+ + G I AL +
Sbjct: 73 FVDFL-EFIAAVNLIMQEKMEQK-LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQT 130
Query: 53 ------LEETFAVFDLNQDGLIDREEF 73
+ F D+N DG + EEF
Sbjct: 131 LSPEEFINLVFHKIDINNDGELTLEEF 157
Score = 30.9 bits (70), Expect = 0.33
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
SG L + + L N K + +++ + FD N+DG +D EF
Sbjct: 34 SGLQTLHEF---KTLLGLQGLNQK------ANKHIDQVYNTFDTNKDGFVDFLEF 79
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 33.0 bits (76), Expect = 0.018
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
+ E F FD N DG I E
Sbjct: 11 ADRERIFKRFDTNGDGKISSSE 32
Score = 28.4 bits (64), Expect = 0.76
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ +E+ A D + DG I +EF
Sbjct: 43 VTPDEVRRMMAEIDTDGDGFISFDEF 68
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 34.2 bits (79), Expect = 0.020
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
++ L+ F D ++DG I + +
Sbjct: 105 IESTFLKAAFNKIDKDEDGYISKSDI 130
Score = 32.3 bits (74), Expect = 0.087
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
+ E F D N +G + E
Sbjct: 39 KYINELFYKLDTNHNGSLSHREI 61
Score = 30.0 bits (68), Expect = 0.53
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+K ++ D+N G I EF
Sbjct: 70 IKKWDINRILQALDINDRGNITYTEF 95
Score = 28.4 bits (64), Expect = 2.2
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 25/82 (30%)
Query: 15 NDFISGTLNLSQCSAKQNGLQALFR----NDKGKI-----------YALKDNELEETFAV 59
+F++G + L+A F ++ G I L +N+++ F
Sbjct: 93 TEFMAGCYRWKNIESTF--LKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLS 150
Query: 60 FDLNQDGL--------IDREEF 73
+ G+ I +EF
Sbjct: 151 VHSIKKGIPREHIINKISFQEF 172
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 35.0 bits (81), Expect = 0.021
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 23/86 (26%)
Query: 11 IDVQND-------FISGTLNLSQCSAKQNGLQALFRNDK---GKI-------------YA 47
+D+ FI+ ++ + +++ +A DK GKI +
Sbjct: 390 LDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSS 449
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
++ ELE D N+DG +D EF
Sbjct: 450 IQMEELESIIEQVDNNKDGEVDFNEF 475
Score = 32.7 bits (75), Expect = 0.12
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 20/118 (16%)
Query: 11 IDVQNDFISGTL---NLSQCSAKQNGLQALFRNDKGKI-YALKDNELEETFAVFDLNQDG 66
+D ND G L L + + L+ + N + + +++++ + D++ G
Sbjct: 340 LDTNND---GMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSG 396
Query: 67 LIDREEF-AFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKI 123
I+ EF A +R LL F D + I +L K+
Sbjct: 397 SIEYSEFIASAIDR---------TILLSRERMERAFKMFD---KDGSGKISTKELFKL 442
Score = 28.9 bits (65), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
+L E F D N DG++DR+E
Sbjct: 331 KQLTEIFRKLDTNNDGMLDRDEL 353
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 33.2 bits (76), Expect = 0.021
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 22 LNLSQCSAKQNGLQALFR----NDKGKI-----------YALKDNELEETFAVFDLNQDG 66
L+L+Q S+ + +R + G++ L D L + + + D + G
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKG 60
Query: 67 LIDREEFA 74
++ ++EF
Sbjct: 61 VLSKQEFF 68
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 33.5 bits (77), Expect = 0.023
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ + + DL+ DG +++ EF
Sbjct: 74 MSKEDAQGMVREGDLDGDGALNQTEF 99
Score = 28.1 bits (63), Expect = 1.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL + F++ + LI E
Sbjct: 41 ELCKGFSLLADPERHLITAESL 62
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 34.1 bits (79), Expect = 0.024
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
E++ +A F + G +D +
Sbjct: 128 FTPEEIKNMWAAFPPDVAGNVDYKNI 153
Score = 32.2 bits (74), Expect = 0.098
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
+ +E F V D N DG+ID+++
Sbjct: 25 EDFKEAFTVIDQNADGIIDKDD 46
Score = 30.2 bits (69), Expect = 0.42
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ F V D + G I +
Sbjct: 96 VIMGAFKVLDPDGKGSIKKSFL 117
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 33.9 bits (78), Expect = 0.026
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ E TF DL+ G +D +E
Sbjct: 146 PSQEDCEATFRHCDLDNAGDLDVDEM 171
Score = 33.2 bits (76), Expect = 0.058
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 51 NELEETFAVFDLNQDGLIDREEFAFCWNR 79
+ F D+N +G I +E +
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASD 48
Score = 31.3 bits (71), Expect = 0.22
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEF 73
L + F +FD + G I +E+
Sbjct: 109 TLIREWGDAVFDIFDKDGSGTITLDEW 135
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 33.6 bits (78), Expect = 0.027
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
D E++E + +++ G + EF
Sbjct: 109 FTDEEVDEMYREAPIDKKGNFNYVEF 134
Score = 31.7 bits (73), Expect = 0.12
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E F + D N+DG ID+E+
Sbjct: 7 QEFKEAFNMIDQNRDGFIDKED 28
Score = 30.2 bits (69), Expect = 0.37
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ FA FD G I +
Sbjct: 77 VIRNAFACFDEEASGFIHEDHL 98
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 34.7 bits (80), Expect = 0.027
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 23/85 (27%)
Query: 11 IDVQND-------FISGTLNLSQCSAKQNGLQALF----RNDKGKI-----------YAL 48
+D + FIS ++ +++ L+ F + GKI ++
Sbjct: 408 VDFDKNGYIEYSEFISVCMDKQILFSEER-LRRAFNLFDTDKSGKITKEELANLFGLTSI 466
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+ + D N+D +ID +EF
Sbjct: 467 SEKTWNDVLGEADQNKDNMIDFDEF 491
Score = 30.4 bits (69), Expect = 0.61
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 20/115 (17%)
Query: 11 IDVQNDFISGTLNLSQCSAKQNGLQALFRN-DKGKIYALKDNELEETFAVFDLNQDGLID 69
+D D G L+ + G L ++ + E++ D +++G I+
Sbjct: 364 LDKNGD---GQLDKKEL---IEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIE 417
Query: 70 REEF-AFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKI 123
EF + C ++ L F D ++ I +L +
Sbjct: 418 YSEFISVCMDK---------QILFSEERLRRAFNLFD---TDKSGKITKEELANL 460
Score = 30.1 bits (68), Expect = 0.79
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 51 NELEETFAVFDLNQDGLIDREEF---------AFCWNRWIKVVIEPINKLLDTVNFN 98
EL + F D N DG +D++E +K V E ++ +L V+F+
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD 411
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 33.7 bits (78), Expect = 0.028
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ ++EE DLN DG +D EEF
Sbjct: 122 VGHRDIEEIIRDVDLNGDGRVDFEEF 147
Score = 31.4 bits (72), Expect = 0.18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
EL E F FD ++DG I+ +
Sbjct: 11 EELREAFREFDKDKDGYINCRD 32
Score = 31.0 bits (71), Expect = 0.19
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL + F FD N DG I E
Sbjct: 89 ELRDAFREFDTNGDGEISTSEL 110
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 34.0 bits (78), Expect = 0.028
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
D +L F ++D++ +G IDR E
Sbjct: 86 VDQKLRWYFKLYDVDGNGCIDRGEL 110
Score = 30.1 bits (68), Expect = 0.54
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
F D+N DG + EEF
Sbjct: 134 NMVFDKIDINGDGELSLEEF 153
Score = 30.1 bits (68), Expect = 0.59
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 19 SGTLNLSQCSAKQNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
SG L L + + + Y E+ F FD N+DG ID E+
Sbjct: 29 SGQLTLYEF---KQFFGLKNLSPSANKYV------EQMFETFDFNKDGYIDFMEY 74
Score = 26.7 bits (59), Expect = 8.0
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 48 LKDNELEETFAVF-DLNQDGLIDREEF 73
L E + + F G + EF
Sbjct: 11 LSATECHQWYKKFMTECPSGQLTLYEF 37
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 34.3 bits (78), Expect = 0.028
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 31 QNGLQALFRNDKGKI-YALKDNELEETFAVFDLNQDGLIDREEF----AFCWNRWIKVVI 85
+N L+ LF K KI D + +FD N+DG +D + A N ++ +
Sbjct: 127 KNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKM 186
Query: 86 EPINKLLDTVNFNAVFYSLDWHPSNHVSF 114
+ +++ +F +F D + +
Sbjct: 187 DASSQVERKRDFEKIFAHYDVSRTGALEG 215
Score = 31.6 bits (71), Expect = 0.24
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
E + + +D + G I E
Sbjct: 102 NSVEFMKIWRKYDADSSGYISAAEL 126
Score = 30.8 bits (69), Expect = 0.39
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ + FD + +G I+ +E
Sbjct: 12 GFLQIWQHFDADDNGYIEGKEL 33
Score = 29.6 bits (66), Expect = 1.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFA 74
D E D+N+DG I + E A
Sbjct: 239 DKFRECLLTHCDMNKDGKIQKSELA 263
Score = 27.0 bits (59), Expect = 7.9
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 32 NGLQALFRNDKGKIYALKDN---ELEETFAVFDLNQDGLIDREEFA 74
+ + + + + K + + + +D DG + EE A
Sbjct: 35 DFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELA 80
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 33.6 bits (78), Expect = 0.028
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D+E++E D++ DG I+ EEF
Sbjct: 116 LTDDEVDEMIREADIDGDGHINYEEF 141
Score = 30.1 bits (69), Expect = 0.38
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E FA+FD + DG I +E
Sbjct: 10 AEFKEAFALFDKDGDGTITTKE 31
Score = 29.4 bits (67), Expect = 0.67
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL E F VFD + +GLI E
Sbjct: 84 ELIEAFKVFDRDGNGLISAAEL 105
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 32.1 bits (74), Expect = 0.029
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+ E+ F VFD N DG+ID +EF
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEF 30
Score = 31.0 bits (71), Expect = 0.071
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEF 73
L D E+EE D + +G+ID EF
Sbjct: 41 PLTDAEVEEAMKEADEDGNGVIDIPEF 67
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 34.0 bits (78), Expect = 0.029
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 49 KDNELEETFAVFDLNQDGLIDREE 72
+++ F ++DL Q G I+REE
Sbjct: 109 VHEKVKFAFKLYDLRQTGFIEREE 132
Score = 31.7 bits (72), Expect = 0.20
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 34 LQALFRNDKGKIYALKDNELEE----TFAVFDLNQDGLIDREEF 73
+ AL + L ++ +E F D DG ID +E+
Sbjct: 137 VVALLHESELV---LSEDMIEVMVDKAFVQADRKNDGKIDIDEW 177
Score = 27.4 bits (61), Expect = 4.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 57 FAVFDLNQDGLIDREEF 73
F VFD+ ++G+I+ EF
Sbjct: 80 FDVFDVKRNGVIEFGEF 96
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 33.7 bits (78), Expect = 0.030
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L + EL+E A D N D ID +EF
Sbjct: 134 LTEEELQEMIAEADRNDDNEIDEDEF 159
Score = 30.6 bits (70), Expect = 0.30
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
E+ E F +FD + G ID +E
Sbjct: 29 EIREAFDLFDTDGSGTIDAKE 49
Score = 30.2 bits (69), Expect = 0.50
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ + F +FD + G I ++
Sbjct: 102 EILKAFRLFDDDNSGTITIKDL 123
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 34.0 bits (78), Expect = 0.033
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+ N+L F ++DL++D I R+E
Sbjct: 111 RSNKLHFAFRLYDLDKDDKISRDEL 135
Score = 30.5 bits (69), Expect = 0.45
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 43 GKIYALKDNEL-EETFAVFDLNQDGLIDREEF 73
+I L N L + F + ++ F
Sbjct: 52 QRIPELAINPLGDRIINAFFSEGEDQVNFRGF 83
Score = 29.4 bits (66), Expect = 1.1
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 48 LKDNELEE----TFAVFDLNQDGLIDREEF 73
+ D +L T D + D I EF
Sbjct: 147 ISDEQLGSIADRTIQEADQDGDSAISFTEF 176
Score = 29.4 bits (66), Expect = 1.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L F D ++G + RE+F
Sbjct: 30 RLYSRFTSLDKGENGTLSREDF 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.034
Identities = 27/197 (13%), Positives = 53/197 (26%), Gaps = 84/197 (42%)
Query: 36 ALFRN---DKGKIYAL-------KD--NELEETFAVFDLNQDGLIDR------------- 70
ALFR ++ A+ D EL + + + + LI
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 71 -EEFAFCWN----RWIK---------------VVIEPINKLLDTVNFNAVFYSLDWHPSN 110
E F W++ + P+ ++ ++ L + P
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 111 HVSFIDNIKLRKIHHTSTIQPED---------AQTYD----------TVVF-DGDTPIR- 149
LR +T + +++ TV+F G +R
Sbjct: 263 ---------LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG---VRC 310
Query: 150 QRLWPRHC-----VQDS 161
+P ++DS
Sbjct: 311 YEAYPNTSLPPSILEDS 327
Score = 34.6 bits (79), Expect = 0.039
Identities = 20/157 (12%), Positives = 58/157 (36%), Gaps = 53/157 (33%)
Query: 6 SALLVIDVQNDFISGTLNLSQCSAKQNGLQALF-RNDKGKIYAL---KDNELEETFAVFD 61
+AL + + +++ ++ +F R G + +D + +
Sbjct: 1768 AALASL-------ADVMSIES------LVEVVFYR---GMTMQVAVPRDELGRSNYGMIA 1811
Query: 62 LN--QDGLIDREEFAFCWNRWIKVVIEPINK----LLDTVNFN-------------AVFY 102
+N + +E ++ V+E + K L++ VN+N A+
Sbjct: 1812 INPGRVAASFSQEA-------LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-D 1863
Query: 103 SLDWHPSNHVSFID--NIKLRKIHHTSTIQPEDAQTY 137
++ +N ++FI I + ++ + +++ + +
Sbjct: 1864 TV----TNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 33.3 bits (77), Expect = 0.035
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D E++E +++ +G ID ++F
Sbjct: 116 LTDAEVDELLKGVEVDSNGEIDYKKF 141
Score = 30.6 bits (70), Expect = 0.31
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ + F VFD G + +
Sbjct: 84 DFVKAFQVFDKESTGKVSVGDL 105
Score = 30.3 bits (69), Expect = 0.33
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 51 NELEETFAVFDLNQDGLIDREEFA 74
++ F +FD G I ++
Sbjct: 4 RANKDIFTLFDKKGQGAIAKDSLG 27
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 33.3 bits (77), Expect = 0.035
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ + ++E+ D N DG ID +EF
Sbjct: 129 VTEEDIEDLMKDSDKNNDGRIDFDEF 154
Score = 30.6 bits (70), Expect = 0.31
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
E + F +FD + G I +E
Sbjct: 21 EFKAAFDMFDADGGGDISTKE 41
Score = 30.6 bits (70), Expect = 0.32
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
EL F +FD N DG ID EE
Sbjct: 97 ELANCFRIFDKNADGFIDIEE 117
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 33.2 bits (77), Expect = 0.036
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D EL+E D + DG + +EF
Sbjct: 112 LTDEELQEMIDEADRDGDGEVSEQEF 137
Score = 30.5 bits (70), Expect = 0.26
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E+ E F +FD + G ID +E
Sbjct: 6 QEIREAFDLFDADGTGTIDVKE 27
Score = 29.7 bits (68), Expect = 0.50
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ + F +FD ++ G I +
Sbjct: 80 EILKAFKLFDDDETGKISFKNL 101
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 32.5 bits (75), Expect = 0.036
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L+ + ++ L D E + D + DG I +EF
Sbjct: 64 LKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFE 104
Score = 31.4 bits (72), Expect = 0.089
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
N++++ F D + G I+ EE
Sbjct: 42 NDVKKVFKAIDADASGFIEEEE 63
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 34.5 bits (79), Expect = 0.037
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D E++E D++ DG ++ EEF
Sbjct: 418 LTDEEVDEMIREADIDGDGQVNYEEF 443
Score = 30.2 bits (68), Expect = 0.73
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ E F VFD + +G I E
Sbjct: 386 EIREAFRVFDKDGNGYISAAEL 407
Score = 29.5 bits (66), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
E +E F++FD + DG I +E
Sbjct: 312 AEFKEAFSLFDKDGDGTITTKEL 334
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 33.6 bits (77), Expect = 0.041
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+++L+ TF ++D +++G IDR+E
Sbjct: 93 LEHKLKWTFKIYDKDRNGCIDRQEL 117
Score = 31.7 bits (72), Expect = 0.18
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 53 LEETFAVFDLNQDGLIDREEF 73
++ F + D N DG + EF
Sbjct: 150 VDRIFLLVDENGDGQLSLNEF 170
Score = 31.7 bits (72), Expect = 0.20
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 37 LFRNDKGKIYALKDNELEETFA-----VFDLNQDGLIDREEF 73
LF ++ + + + DNE + FD N D ID E+
Sbjct: 40 LFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEY 81
Score = 28.2 bits (63), Expect = 2.4
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 51 NELEETFAVF-DLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPS 109
+L+E + F + G + EF K + + T A+F + D +
Sbjct: 22 AQLQEWYKKFLEECPSGTLFMHEF--------KRFFKVPDNEEATQYVEAMFRAFDTNGD 73
Query: 110 NHVSFIDNIKLRKIHHTSTIQPEDA-----QTYDTVVFDGD 145
N + F++ + ++ E + YD D +
Sbjct: 74 NTIDFLEYVAA--LNLVLRGTLEHKLKWTFKIYDK---DRN 109
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 33.6 bits (77), Expect = 0.041
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
D + F +FD + DG ++RE+
Sbjct: 96 PDIKSHYAFRIFDFDDDGTLNREDL 120
Score = 30.1 bits (68), Expect = 0.50
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 48 LKDNELEE----TFAVFDLNQDGLIDREEF 73
L +E+++ D+++DG I+ EF
Sbjct: 136 LSASEMKQLIDNILEESDIDRDGTINLSEF 165
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 33.5 bits (77), Expect = 0.043
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L E E +D N G +D EEF
Sbjct: 70 LDQAEAEGVCRKWDRNGSGTLDLEEF 95
Score = 32.3 bits (74), Expect = 0.12
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L F D + +D +EF
Sbjct: 38 GLARFFRQLDRDGSRSLDADEF 59
Score = 31.9 bits (73), Expect = 0.13
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
++ + FA D + DG++ ++
Sbjct: 107 REAVIAAAFAKLDRSGDGVVTVDDL 131
Score = 26.5 bits (59), Expect = 7.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 48 LKDNELEETFAVFDLN-QDGLIDREEF 73
+D L FD + +DG + EF
Sbjct: 149 TEDEVLRRFLDNFDSSEKDGQVTLAEF 175
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 32.9 bits (76), Expect = 0.045
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ ++++EE D N DG ID +EF
Sbjct: 128 ITEDDIEELMKDGDKNNDGRIDYDEF 153
Score = 30.2 bits (69), Expect = 0.41
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL + F +FD N DG ID EE
Sbjct: 96 ELSDLFRMFDKNADGYIDLEEL 117
Score = 26.4 bits (59), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 51 NELEETFAVFDLN-QDGLIDREE 72
NE + F +F L +DG I +E
Sbjct: 18 NEFKAAFDIFVLGAEDGSISTKE 40
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 33.3 bits (77), Expect = 0.046
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D E++E D++ DG ++ EEF
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEF 142
Score = 30.6 bits (70), Expect = 0.39
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E F++FD + DG I +E
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKE 32
Score = 29.8 bits (68), Expect = 0.65
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ E F VFD + +G I E
Sbjct: 85 EIREAFRVFDKDGNGYISAAEL 106
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 32.9 bits (76), Expect = 0.047
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L +E+EE ++ DG I+ E F
Sbjct: 109 LTSSEVEELMKEVSVSGDGAINYESF 134
Score = 31.7 bits (73), Expect = 0.11
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
++++E F +FD + DG + EE
Sbjct: 5 DQIQECFQIFDKDNDGKVSIEE 26
Score = 31.0 bits (71), Expect = 0.21
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ + F D +G I E
Sbjct: 77 EMLDAFRALDKEGNGTIQEAEL 98
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 32.2 bits (74), Expect = 0.047
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 49 KDNELEETFAVFDLNQDGLIDREE 72
+++++ F V D ++ G I+ +E
Sbjct: 39 SLDDVKKAFYVIDQDKSGFIEEDE 62
Score = 32.2 bits (74), Expect = 0.050
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L+ +N AL D E + A D + DG+I +EFA
Sbjct: 63 LKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFA 103
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 31.3 bits (72), Expect = 0.049
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
E++E F +FD N+ G ID E
Sbjct: 7 QEIKEAFDLFDTNKTGSIDYHEL 29
Score = 27.5 bits (62), Expect = 1.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+K E+ E +D +G I ++F
Sbjct: 40 VKKPEILELMNEYDREGNGYIGFDDF 65
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 31.9 bits (73), Expect = 0.049
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D E++E D++ DG ++ EEF
Sbjct: 62 LTDEEVDEMIREADIDGDGQVNYEEF 87
Score = 30.7 bits (70), Expect = 0.14
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E+ E F V D + +G I E
Sbjct: 30 EIREAFRVEDKDGNGYISAAEL 51
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 31.8 bits (73), Expect = 0.050
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E + F +FD + G I +E
Sbjct: 20 AEFKAAFDMFDADGGGDISTKE 41
Score = 27.2 bits (61), Expect = 1.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
EL+ D + G ID EEF
Sbjct: 53 PTKEELDAIIEEVDEDGSGTIDFEEF 78
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 31.5 bits (72), Expect = 0.057
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E F +FD + D + EE
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEE 35
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 31.8 bits (73), Expect = 0.059
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 50 DNELEETFAVFDLNQDGLIDREE 72
D +++E F + D +Q G I+ EE
Sbjct: 40 DAQVKEVFEILDKDQSGFIEEEE 62
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L+ + + L D E + A D + DG I +EFA
Sbjct: 63 LKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFA 103
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 30.9 bits (71), Expect = 0.062
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L EL+ D++QDG ++ EEFA
Sbjct: 39 LPQEELDAMIREADVDQDGRVNYEEFA 65
Score = 30.9 bits (71), Expect = 0.066
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
+L+ F FD + DG I +E
Sbjct: 7 DLQVAFRAFDQDGDGHITVDE 27
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 32.5 bits (75), Expect = 0.064
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L +L+ D + G +D EEF
Sbjct: 124 LSSEDLDAMIDEIDADGSGTVDFEEF 149
Score = 30.6 bits (70), Expect = 0.31
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL E F ++D +G I +
Sbjct: 92 ELREAFRLYDKEGNGYISTDVM 113
Score = 27.1 bits (61), Expect = 4.7
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 51 NELEETFAVFD-LNQDGLIDREE 72
LE F F+ G + ++
Sbjct: 13 KLLETAFRDFETPEGSGRVSTDQ 35
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 31.8 bits (72), Expect = 0.071
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 34 LQALFRNDKGKIYALKDNE-------------LEETFAVFDLNQDGLIDREEF 73
L+ALF + K+Y K+ E E D NQD L+ EEF
Sbjct: 42 LEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEF 94
Score = 28.0 bits (62), Expect = 1.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLD 93
+ F + D+N DG++D +E + + ++ V +P N+ D
Sbjct: 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDD 62
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 32.2 bits (73), Expect = 0.071
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 14 QNDFISGTLNLSQCSAKQNGL-----QALFRNDKGKIYALKDNELEE---TFAVFDLNQD 65
Q+ + G A+Q + + K ++LE + FDLN +
Sbjct: 3 QSRDLQGGKAFGLLKAQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGN 62
Query: 66 GLIDREE 72
G ID
Sbjct: 63 GDIDIMS 69
Score = 27.6 bits (61), Expect = 2.6
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
EL+ + +F
Sbjct: 81 KTHLELKRLIREVSSGSEETFSYSDF 106
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 31.2 bits (71), Expect = 0.084
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L EL + + D ++DG + +EF
Sbjct: 40 LPILELSHIWELSDFDKDGALTLDEFC 66
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 31.5 bits (72), Expect = 0.093
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L+ + AL D E + D + DG I +E+A
Sbjct: 64 LKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWA 104
Score = 31.1 bits (71), Expect = 0.13
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 50 DNELEETFAVFDLNQDGLIDREE 72
+++++ F V D ++ G I+ +E
Sbjct: 41 ADDIKKAFFVIDQDKSGFIEEDE 63
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 31.2 bits (71), Expect = 0.099
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L L +++ D G + +++FA
Sbjct: 41 LPSTLLAHIWSLCDTKDCGKLSKDQFA 67
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 31.1 bits (71), Expect = 0.11
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 50 DNELEETFAVFDLNQDGLIDREE 72
++L+E F + D +Q G I+ +E
Sbjct: 40 SSQLKEIFRILDNDQSGFIEEDE 62
Score = 30.7 bits (70), Expect = 0.18
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L+ + + L +E + A D + DG I EEF
Sbjct: 63 LKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQ 103
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D E+E+ DL+ DG ++ EEF
Sbjct: 42 LTDEEVEQMIKEADLDGDGQVNYEEF 67
Score = 30.6 bits (70), Expect = 0.12
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 50 DNELEETFAVFDLNQDGLIDREE 72
+ EL+E F VFD +Q+G I E
Sbjct: 8 EEELKEAFKVFDKDQNGYISASE 30
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 32.5 bits (74), Expect = 0.12
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
D+++ +F ++DL Q G I+R+E
Sbjct: 120 IDDKIHFSFQLYDLKQQGFIERQEV 144
Score = 30.2 bits (68), Expect = 0.59
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 48 LKDNELEE----TFAVFDLNQDGLIDREEF 73
LKD +E+ TF D DG ID+EE+
Sbjct: 159 LKDTVIEDIIDKTFEEADTKHDGKIDKEEW 188
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 32.5 bits (74), Expect = 0.12
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 41 DKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
K + + E + F ++D + +G ID E
Sbjct: 181 LKFQGIKMCGKEFNKAFELYDQDGNGYIDENEL 213
Score = 32.5 bits (74), Expect = 0.13
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 50 DNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPS 109
+ +FD N DG ++ E A +++ + FN F D
Sbjct: 146 AEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYD---Q 202
Query: 110 NHVSFIDNIKLRKI------HHTSTIQPEDAQTYDTVVFDGD 145
+ +ID +L + + + + TY +
Sbjct: 203 DGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALS 244
Score = 32.2 bits (73), Expect = 0.14
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E +T+ +D + G I+ EE
Sbjct: 104 EFMKTWRKYDTDHSGFIETEEL 125
Score = 31.4 bits (71), Expect = 0.29
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREE 72
+ ++ E + FD + G ++ +E
Sbjct: 13 ITASQFFEIWLHFDADGSGYLEGKE 37
Score = 28.3 bits (63), Expect = 2.7
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 32 NGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
N +Q L + K L E++ + DG I E A
Sbjct: 40 NLIQELLQARKKAGLELSP-EMKTFVDQYGQRDDGKIGIVELA 81
Score = 27.5 bits (61), Expect = 4.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 58 AVFDLNQDGLIDREEFAFC 76
+ L+ G + R + A
Sbjct: 239 NIMALSDGGKLYRTDLALI 257
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 31.7 bits (73), Expect = 0.12
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E++E F++ D+++DG + +E+
Sbjct: 18 QEMKEAFSMIDVDRDGFVSKED 39
Score = 30.6 bits (70), Expect = 0.31
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ FA+FD + ++ E
Sbjct: 88 TIRNAFAMFDEQETKKLNIEYI 109
Score = 28.2 bits (64), Expect = 1.8
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+E+ TF + G D +F
Sbjct: 120 FNKDEMRMTFKEAPVE-GGKFDYVKF 144
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 32.1 bits (73), Expect = 0.12
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIKVVIEPINKLLD 93
+ +L+ F+++DL+ +G I + E K+V + D
Sbjct: 95 GKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPED 141
Score = 30.6 bits (69), Expect = 0.39
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
E+ F D N+DG + EEF
Sbjct: 150 EKIFRQMDTNRDGKLSLEEF 169
Score = 29.8 bits (67), Expect = 0.61
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 51 NELEETFAVF-DLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNF-NAVFYSLDWHP 108
+E++E + F G + EEF K + D F VF + D +
Sbjct: 25 HEIQEWYKGFLRDCPSGHLSMEEF--------KKIYGNFFPYGDASKFAEHVFRTFDANG 76
Query: 109 SNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGD 145
+ F + I + TS + E + ++D D
Sbjct: 77 DGTIDFREFI--IALSVTSRGKLEQKLKWAFSMYDLD 111
Score = 28.7 bits (64), Expect = 1.6
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 37 LFRNDKGKIYALKDNELEET------FAVFDLNQDGLIDREEF 73
L + KIY + + F FD N DG ID EF
Sbjct: 43 LSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREF 85
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 30.9 bits (70), Expect = 0.15
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFCW 77
L + L + + D++ DG++DR+EFA
Sbjct: 45 LPVDILGRVWELSDIDHDGMLDRDEFAVAM 74
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle;
rigor-like, squid, contractIle protein; 2.60A
{Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B*
3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 31.3 bits (72), Expect = 0.15
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
EL+E F + D ++DG I E+
Sbjct: 16 QELKEAFTMIDQDRDGFIGMED 37
Score = 30.2 bits (69), Expect = 0.39
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L F++FD + G I +
Sbjct: 86 ALRNAFSMFDEDGQGFIPEDYL 107
Score = 29.4 bits (67), Expect = 0.75
Identities = 2/26 (7%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
E++ + L + + +
Sbjct: 118 FSKEEIKNVWKDAPLK-NKQFNYNKM 142
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 29.9 bits (68), Expect = 0.17
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L+E D N DG + EEF
Sbjct: 46 TLDEMIEEVDKNGDGEVSFEEF 67
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 30.7 bits (70), Expect = 0.18
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L ++ + L E + A D + DG I EEF+
Sbjct: 63 LGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFS 103
Score = 30.0 bits (68), Expect = 0.33
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
++++ F + D ++ G I+ +E
Sbjct: 42 DVKKVFHILDKDKSGFIEEDE 62
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 31.9 bits (72), Expect = 0.18
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+L+ F ++D+N+DG I +EE
Sbjct: 163 VHEKLKWAFNLYDINKDGCITKEEM 187
Score = 31.2 bits (70), Expect = 0.31
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
E F D NQDG++ +EF
Sbjct: 216 ERFFQKMDRNQDGVVTIDEF 235
Score = 27.7 bits (61), Expect = 4.1
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 38 FRNDKGKIYALKDNEL--EETFAVFDLNQDGLIDREEF 73
F+ + + D F FD + +G I E+F
Sbjct: 114 FKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDF 151
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 31.4 bits (71), Expect = 0.19
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+ +L F ++DLN DG I +E
Sbjct: 97 LEEKLSWAFELYDLNHDGYITFDEM 121
Score = 31.0 bits (70), Expect = 0.27
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
++ F + D N+DG I +EF
Sbjct: 150 KKIFKLMDKNEDGYITLDEF 169
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 31.4 bits (71), Expect = 0.19
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
D +L F ++DL+ DG I R E
Sbjct: 97 LDEKLRWAFKLYDLDNDGYITRNEM 121
Score = 29.8 bits (67), Expect = 0.71
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
+ FA+ D N DG + +EF
Sbjct: 150 DRIFAMMDKNADGKLTLQEF 169
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 31.8 bits (72), Expect = 0.19
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
E F D N+DG++ +EF
Sbjct: 189 ETFFQKMDKNKDGVVTIDEF 208
Score = 31.4 bits (71), Expect = 0.28
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+L F ++D+N+DG I +EE
Sbjct: 136 VQEKLNWAFNLYDINKDGYITKEEM 160
Score = 29.1 bits (65), Expect = 1.4
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 44 KIYALKDNELEET------FAVFDLNQDGLIDREEF 73
+IY+ + + T F FD + +G + E+F
Sbjct: 89 EIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDF 124
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 30.9 bits (71), Expect = 0.20
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
+ ++ F++FD + G I +
Sbjct: 5 SPYKQAFSLFDRHGTGRIPKTS 26
Score = 29.4 bits (67), Expect = 0.65
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E + F VFD + G+I E
Sbjct: 77 EFVKGFQVFDKDATGMIGVGEL 98
Score = 28.6 bits (65), Expect = 1.3
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L + E++E + DG+++ +F
Sbjct: 109 LSNEEMDELLKGVPVK-DGMVNYHDF 133
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 31.3 bits (71), Expect = 0.20
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEF 73
+++L F ++DL+ +GLI +E
Sbjct: 95 GELNDKLIWAFQLYDLDNNGLISYDEM 121
Score = 30.6 bits (69), Expect = 0.45
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
+ F + D N+DG + EEF
Sbjct: 150 NKIFNMMDKNKDGQLTLEEF 169
Score = 27.1 bits (60), Expect = 4.7
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 51 NELEETFAVF-DLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNF-NAVFYSLDWHP 108
EL++ + F G +++ EF + + + D F VF D
Sbjct: 25 KELQQWYKGFFKDCPSGHLNKSEF--------QKIYKQFFPFGDPSAFAEYVFNVFD--- 73
Query: 109 SNHVSFIDNIKLRK-IHHTSTIQPEDAQTYDTVVFDGD 145
++ +ID + + TS + D + ++D D
Sbjct: 74 ADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLD 111
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 30.5 bits (69), Expect = 0.22
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L +L + + D++QDG + EEF
Sbjct: 45 LPQAQLASIWNLSDIDQDGKLTAEEFI 71
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 30.3 bits (69), Expect = 0.22
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 52 ELEETFAVFDLNQDGLIDREE 72
++++ F D +Q G +D +E
Sbjct: 42 QVKDIFRFIDNDQSGYLDGDE 62
Score = 29.9 bits (68), Expect = 0.27
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFA 74
L+ + + L ++E + D + DG I +EF
Sbjct: 63 LKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQ 103
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 30.9 bits (70), Expect = 0.26
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 48 LKDNELEE----TFAVFDLNQDGLIDREEF 73
LK++ + F D N+DG++ +EF
Sbjct: 133 LKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 162
Score = 30.6 bits (69), Expect = 0.39
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+L TF ++D+N+DG I++EE
Sbjct: 90 VHEKLRWTFNLYDINKDGYINKEEM 114
Score = 27.9 bits (62), Expect = 2.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 44 KIYALKDNELEET------FAVFDLNQDGLIDREEF 73
+IYA + + F FD Q G + E+F
Sbjct: 43 QIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDF 78
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin,
myosin V, chicken, molecular motor, ATPase, ELC, IQ
motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo
sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C
1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 30.6 bits (70), Expect = 0.27
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E F +FD DG I +
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQ 31
Score = 30.3 bits (69), Expect = 0.36
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ E F VFD +G + E
Sbjct: 88 DYLEGFRVFDKEGNGKVMGAEL 109
Score = 27.2 bits (61), Expect = 3.9
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ + E+E A + +G I+ E F
Sbjct: 120 MTEEEVETVLAG-HEDSNGCINYEAF 144
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 29.4 bits (67), Expect = 0.27
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L+E F + D + G I +E
Sbjct: 24 GLKELFKMIDTDNSGTITFDEL 45
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L ++E+++ D+++ G ID EF
Sbjct: 56 LMESEIKDLMDAADIDKSGTIDYGEF 81
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 31.1 bits (71), Expect = 0.27
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 29 AKQNGLQALFRN-DK---GKI-------------YALKDNELEETFAVFDLNQDGLIDRE 71
++ FR D G++ Y + + + FD + G + +
Sbjct: 90 HFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFD 149
Query: 72 EFAFC 76
++
Sbjct: 150 DYVEL 154
Score = 29.6 bits (67), Expect = 0.78
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 50 DNELEETFAVFDLNQDGLIDREE 72
+ EL E F D + G I E
Sbjct: 26 NQELMEWFRAVDTDGSGAISVPE 48
Score = 26.5 bits (59), Expect = 7.4
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 52 ELEETFAVFDLNQDGLI--DREEF 73
+ FA +D + G + + F
Sbjct: 160 RVRNVFAFYDRERTGQVTFTFDTF 183
Score = 26.5 bits (59), Expect = 7.6
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFCWNRWIK 82
E+ ++D N G I +EF + +
Sbjct: 60 FSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILS 94
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 31.1 bits (70), Expect = 0.28
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
E+ + F N D + +EF
Sbjct: 160 EKIWKYFGKNDDDKLTEKEF 179
Score = 29.6 bits (66), Expect = 0.96
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 47 ALKDNELEETFAVFDLNQDGLIDREEF 73
+ +LE F+++D++ +G I + E
Sbjct: 103 GKTNQKLEWAFSLYDVDGNGTISKNEV 129
Score = 26.5 bits (58), Expect = 9.9
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 51 NELEETFAVF-DLNQDGLIDREEFAFCWNRWIKVVIEPINKLLDTVNFNAVFYSLDWHPS 109
EL + F G I +++F + + VF S D +
Sbjct: 33 EELCSWYQSFLKDCPTGRITQQQF-------QSIYAKFFPDTDPKAYAQHVFRSFDSNLD 85
Query: 110 NHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVVFDGD 145
+ F + + +H T+ + + ++D D
Sbjct: 86 GTLDFKEYV--IALHMTTAGKTNQKLEWAFSLYDVD 119
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 31.1 bits (70), Expect = 0.29
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 54 EETFAVFDLNQDGLIDREEF 73
+ F D N+DG++ +EF
Sbjct: 176 DVFFQKMDKNKDGIVTLDEF 195
Score = 30.3 bits (68), Expect = 0.51
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
+L TF ++D+N+DG I++EE
Sbjct: 123 VHEKLRWTFNLYDINKDGYINKEEM 147
Score = 29.9 bits (67), Expect = 0.66
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 37 LFRNDKGKIYALKDNELEET------FAVFDLNQDGLIDREEF 73
+ +IYA + + F FD Q G + E+F
Sbjct: 69 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDF 111
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 30.6 bits (70), Expect = 0.29
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
++ +E F +FD D I +
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQ 29
Score = 29.0 bits (66), Expect = 0.83
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ E VFD +G + E
Sbjct: 86 DFVEGLRVFDKEGNGTVMGAEL 107
Score = 26.7 bits (60), Expect = 5.0
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
+ + E+EE + + +G I+ E F
Sbjct: 118 MTEEEVEELMKGQE-DSNGCINYEAF 142
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 30.9 bits (70), Expect = 0.29
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 31 QNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNR 79
Q L K ++ D + G + EF W
Sbjct: 55 QRCLTQSGIAGGYK--PFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV 101
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 30.5 bits (70), Expect = 0.30
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
+E +E F +FD + G I +E
Sbjct: 6 SEFKEAFELFDSERTGFITKEG 27
Score = 29.4 bits (67), Expect = 0.73
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
L + F FD G I +
Sbjct: 80 ILRQAFRTFDPEGTGYIPKAAL 101
Score = 29.0 bits (66), Expect = 0.94
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
LK +E E + + G I + F
Sbjct: 112 LKPHEFAEFLGITETE-KGQIRYDNF 136
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 30.3 bits (68), Expect = 0.30
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFCW 77
L + L + + + D+++DGL+D EEFA
Sbjct: 81 LPNTVLGKIWKLADVDKDGLLDDEEFALAN 110
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 29.4 bits (66), Expect = 0.31
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
L+ L + + L+D E+ D N+D ++ +E+
Sbjct: 34 LKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEY 73
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 29.7 bits (67), Expect = 0.32
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L EL + + D + DG + EF
Sbjct: 53 LSIPELSYIWELSDADCDGALTLPEFC 79
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 30.5 bits (70), Expect = 0.34
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
E +E FA+FD + G I E
Sbjct: 11 AEFKEAFALFDKDNSGSISASE 32
Score = 30.1 bits (69), Expect = 0.46
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL E F VFD N DGLI E
Sbjct: 85 ELLEAFKVFDKNGDGLISAAEL 106
Score = 28.2 bits (64), Expect = 1.7
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
L D E++E + G I+ ++F
Sbjct: 117 LTDAEVDEMLREVS-DGSGEINIKQF 141
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule
2, metal-binding protein; 2.15A {Homo sapiens} PDB:
2jjz_B 2vtg_A
Length = 150
Score = 30.2 bits (68), Expect = 0.36
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 49 KDNELEETFAVFDLNQDGLIDREE 72
K +E + FDLN +G ID
Sbjct: 48 KLTAFKEKYMEFDLNNEGEIDLMS 71
Score = 26.7 bits (59), Expect = 6.6
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
E+++ + I +F
Sbjct: 83 KTHLEMKKMISEVTGGVSDTISYRDF 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.36
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 18/44 (40%)
Query: 168 KDLKVVDNAIKVYKGTDPEVDSYSVFWDNKKLKGTSLA--KQLE 209
+ LK + ++K+Y DS +LA +E
Sbjct: 20 QALKKLQASLKLYA---D--DS-----------APALAIKATME 47
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 29.8 bits (67), Expect = 0.37
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFA 74
L L + +A+ D+N DG +D+ EF+
Sbjct: 63 LPQPVLAQIWALADMNNDGRMDQVEFS 89
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 30.0 bits (68), Expect = 0.47
Identities = 8/49 (16%), Positives = 11/49 (22%), Gaps = 2/49 (4%)
Query: 31 QNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNR 79
Q L N A+ D + G + F W
Sbjct: 22 QRCLTQSGINGTYS--PFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA 68
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.49
Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 57/163 (34%)
Query: 85 IEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQP--EDAQTYDTVVF 142
IEP +L + Y+ + ++ + E A+ +
Sbjct: 907 IEP--ELFNG-------YNPEKKEMIQEVIVE-------EDLEPFEASKETAEQF--KHQ 948
Query: 143 DGD-TPIRQRLWPRHCVQDSW-----GAELHKDLKVVDNAIK----VYKGTDPEVDSYSV 192
GD I + + GA L+ K + + G + +
Sbjct: 949 HGDKVDI----FEIPETGEYSVKLLKGATLYIP-KALRFDRLVAGQIPTGWNAK-----T 998
Query: 193 FWDNKKLKGTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAI 235
+ + +V D + + S ++A
Sbjct: 999 YGISDD----------IISQV-DPIT---LFVL---VSVVEAF 1024
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 29.9 bits (68), Expect = 0.53
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
+ + F +D + G+ID+ E
Sbjct: 74 TDWQNVFRTYDRDNSGMIDKNEL 96
Score = 28.7 bits (65), Expect = 1.5
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 20/78 (25%)
Query: 19 SGTLNLS---QCSAKQNGLQALFR-NDK---GKI-------------YALKDNELEETFA 58
+N S Q +FR D+ G I Y L D +
Sbjct: 58 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 117
Query: 59 VFDLNQDGLIDREEFAFC 76
FD G I ++F
Sbjct: 118 KFDRQGRGQIAFDDFIQG 135
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNR 79
LQ N + ++FD ++ EF W
Sbjct: 29 LQQALSNGTWT--PFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY 72
Score = 26.8 bits (60), Expect = 6.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 51 NELEETFAVFDLNQDGLI--DREEFAFC 76
L + F +D +QDG I E++
Sbjct: 140 QRLTDIFRRYDTDQDGWIQVSYEQYLSM 167
Score = 26.4 bits (59), Expect = 8.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 50 DNELEETFAVFDLNQDGLIDREE 72
+ L F D ++ G+I E
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTE 28
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 30.2 bits (68), Expect = 0.53
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 48 LKDNELEE----TFAVFDLNQDGLIDREEF 73
L +E+++ D+++DG I+ EF
Sbjct: 167 LSASEMKQLIDNILEESDIDRDGTINLSEF 196
Score = 30.2 bits (68), Expect = 0.53
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 49 KDNELEETFAVFDLNQDGLIDREE 72
D + F +FD + DG ++RE+
Sbjct: 127 PDIKSHYAFRIFDFDDDGTLNRED 150
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 29.8 bits (68), Expect = 0.55
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
+ E F FD G I E
Sbjct: 85 DYMEAFKTFDREGQGFISGAEL 106
Score = 29.0 bits (66), Expect = 0.89
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 48 LKDNELEETFAVFDLNQD--GLIDREEF 73
L D +++E + DL +D G + E+F
Sbjct: 117 LSDEDVDEIIKLTDLQEDLEGNVKYEDF 144
Score = 27.1 bits (61), Expect = 3.8
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 51 NELEETFAVFDL--NQDGLIDREE 72
++L++ F +FD +DG +D +
Sbjct: 9 DDLKDVFELFDFWDGRDGAVDAFK 32
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 29.6 bits (66), Expect = 0.60
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 48 LKDNELE----ETFAVFDLNQDGLIDREEFA 74
+ ++EL D N DG ID EFA
Sbjct: 109 MSEDELINIIDGVLRDDDKNNDGYIDYAEFA 139
Score = 28.8 bits (64), Expect = 1.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 57 FAVFDLNQDGLIDREEF 73
F + D + + L+D E
Sbjct: 74 FKMHDYDGNNLLDGLEL 90
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 29.5 bits (67), Expect = 0.65
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 51 NELEETFAVFDLNQDGLIDREE 72
+E + + + G I +
Sbjct: 15 DESDVRIYFNEKSSGGKISIDN 36
Score = 29.1 bits (66), Expect = 0.93
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
EL + FA FD N G + + +
Sbjct: 85 ELIKMFAHFDNNCTGYLTKSQM 106
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 29.7 bits (67), Expect = 0.72
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 31 QNGLQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNR 79
Q L K ++ D + G + EF W
Sbjct: 24 QRCLTQSGIAGGYK--PFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV 70
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 29.1 bits (66), Expect = 0.97
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 52 ELEETFAVFDLNQDGLIDREEF 73
E E F FD GLI E
Sbjct: 86 EFMEAFKTFDREGQGLISSAEI 107
Score = 28.3 bits (64), Expect = 1.7
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 48 LKDNELEETFAVFDL--NQDGLIDREEF 73
+ +++ + F D+ + DG I E+
Sbjct: 118 ITEDQCNDIFTFCDIREDIDGNIKYEDL 145
Score = 27.2 bits (61), Expect = 4.4
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 51 NELEETFAVFDL--NQDGLIDREE 72
E+ E F +FD +DG +D +
Sbjct: 9 EEVREVFDLFDFWDGRDGDVDAAK 32
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 27.7 bits (62), Expect = 1.1
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 48 LKD-NELEETFAVFDLNQDGLIDREEF 73
LK L++ F D N DG + EEF
Sbjct: 43 LKGPRTLDDLFQELDKNGDGEVSFEEF 69
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 27.8 bits (62), Expect = 1.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEF 73
++ + F D+N DG ++ +EF
Sbjct: 46 IRKKGADVWFKELDINTDGAVNFQEF 71
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 29.0 bits (65), Expect = 1.3
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 51 NELEETFAVFDLNQDGLIDREEF 73
F + + G ++ E
Sbjct: 117 ELAYNLFVMNARARSGTLEPHEI 139
Score = 27.1 bits (60), Expect = 5.3
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFCWN 78
L +FD + +G I EF +
Sbjct: 84 LSPQTALRMMRIFDTDFNGHISFYEFMAMYK 114
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 29.1 bits (64), Expect = 2.1
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 24 LSQCSAKQNGL--QALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEFAFCWNRWI 81
L+ + N + Q L R+ KG I + NE +F FD + G++D E+F C
Sbjct: 697 LTTIARTINEVENQILTRDAKG-ISQEQMNEFRASFNHFDRKKTGMMDCEDFRAC----- 750
Query: 82 KVVIEPINKLLDTVNFNAVFYSLDWHPSNHVSFIDNIKLRKIHHTSTIQPEDAQTYDTVV 141
+ + + F + +D + V+F I T D T D V+
Sbjct: 751 ---LISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDF-MSRET-----ADTDTADQVM 801
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 26.7 bits (59), Expect = 3.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ ++ + D N+D +D +E+
Sbjct: 52 EAAFQKLMSNLDSNRDNEVDFQEY 75
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 26.8 bits (59), Expect = 3.6
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ ++ + D N+D +D +E+
Sbjct: 64 EAAFQKLMSNLDSNRDNEVDFQEY 87
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 26.8 bits (59), Expect = 3.7
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ ++ + D N+D +D +E+
Sbjct: 55 EAAFQKLMSNLDSNRDNEVDFQEY 78
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 27.4 bits (61), Expect = 3.9
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 29 AKQNG------LQALFRNDKGKIYALKDNEL-EET----FAVFDLNQDGLIDREEFAFCW 77
A + L + + LK + +T AV D + G + EEF + W
Sbjct: 14 AGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW 73
Query: 78 NR 79
N
Sbjct: 74 NN 75
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 27.3 bits (60), Expect = 4.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
DN L F + D N DG + EE
Sbjct: 97 DNRLRTFFDMVDKNADGRLTAEEV 120
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 28.0 bits (62), Expect = 4.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 224 DVCVG--ASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCV 271
D C+ ASA + IT+G + D T T+ N+G CV
Sbjct: 169 DACLYSPASAPEVITVG-----------ATNAQDQPVTLGTLGTNFGRCV 207
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 26.7 bits (59), Expect = 4.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 48 LKDNE-LEETFAVFDLNQDGLIDREEF 73
LKD L+E D+NQD + E+
Sbjct: 58 LKDVGSLDEKMKSLDVNQDSELKFNEY 84
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 26.3 bits (58), Expect = 4.7
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ L++ D N D +D +E+
Sbjct: 53 EEGLKKLMGSLDENSDQQVDFQEY 76
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 26.4 bits (58), Expect = 4.7
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 49 KDNELEETFAVFDLNQDGLIDREEF 73
++ + + +V D N+D +D E+
Sbjct: 51 RECDYNKFMSVLDTNKDCEVDFVEY 75
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 27.6 bits (61), Expect = 5.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 224 DVCVG--ASAIDAITIGYRTILIEDCCRGVDMDDMERTRNTILENYGSCV 271
D C+ ASA + IT+G + D T T+ N+G CV
Sbjct: 321 DACLYSPASAPEVITVG-----------ATNAQDQPVTLGTLGTNFGRCV 359
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 26.3 bits (58), Expect = 5.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 34 LQALFRNDKGKIYALKDNE--LEETFAVFDLNQDGLIDREEF 73
L+ L + ++ ++E F D NQD +D +EF
Sbjct: 36 LKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEF 77
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase,
hydrolase, glycosidase, family GH16, tropaeolum majus
xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A
2uwb_A 2vh9_A*
Length = 274
Score = 27.3 bits (60), Expect = 5.5
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 102 YSLDWHPSNHVSFIDNIKLRKIHHTSTI-QPEDAQTYDTVVFDGDTPIRQRLWPRHCVQD 160
Y++ W PS + F+D++ +R+ S P + +W
Sbjct: 147 YAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLW-----------VYGSVWDASSWAT 195
Query: 161 SWG 163
G
Sbjct: 196 ENG 198
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 26.3 bits (58), Expect = 5.6
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 34 LQALFRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
++ F N N L + F D N+D ID EF
Sbjct: 35 MKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEF 74
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 26.4 bits (58), Expect = 5.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ +E D N D + EEF
Sbjct: 55 EKVIEHIMEDLDTNADKQLSFEEF 78
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 25.9 bits (57), Expect = 6.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ +++ D N DG +D +EF
Sbjct: 51 ADAVDKIMKELDENGDGEVDFQEF 74
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 25.9 bits (57), Expect = 6.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
++ D N DG I +E+
Sbjct: 54 RKAADKLIQNLDANHDGRISFDEY 77
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 25.9 bits (57), Expect = 7.1
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+++ D +DG + + F
Sbjct: 48 PLAVDKIMKDLDQCRDGKVGFQSF 71
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 26.2 bits (57), Expect = 8.0
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 38 FRNDKGKIYALKDNELEETFAVFDLNQDGLIDREEF 73
R D K D E+E F +D + D + E
Sbjct: 68 LRQDL-KGKGHTDAEIEAIFTKYDQDGDQELTEHEH 102
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 27.1 bits (59), Expect = 8.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 48 LKDNELEETFAVFDLNQDGLIDREEFAFC 76
L ++ L + + D+++DG++D EEFA
Sbjct: 488 LPNSVLGRIWKLSDVDRDGMLDDEEFALA 516
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.5 bits (56), Expect = 9.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 50 DNELEETFAVFDLNQDGLIDREEF 73
+ +++ D N D +D EF
Sbjct: 51 KDAVDKLLKDLDANGDAQVDFSEF 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,517,455
Number of extensions: 274380
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 412
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)