BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15610
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 133/205 (64%), Gaps = 57/205 (27%)
Query: 1 LLAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTL 60
+LA++FL YIFLA+GRVGSTSENITQ++ WV+E DKRS LL
Sbjct: 226 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL------------------ 267
Query: 61 VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKG 120
D L+ G ++LTLVFVETKKG
Sbjct: 268 -------------DLLNATG--------------------------KDSLTLVFVETKKG 288
Query: 121 ADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHV 180
AD LEDFL+H GY TSIHGDR+Q++REEAL +FRSG++PILVATAVAARGLDI +VKHV
Sbjct: 289 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHV 348
Query: 181 INFDLPSDVEEYVHRIGRTGRMGNL 205
INFDLPSD+EEYVHRIGRTGR+GNL
Sbjct: 349 INFDLPSDIEEYVHRIGRTGRVGNL 373
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 119/187 (63%), Gaps = 57/187 (30%)
Query: 19 GSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78
GSTSENITQ++ WV+E DKRS LLDLL++ G ++LTLVFVETKKGAD LEDFL+H
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT-----GKDSLTLVFVETKKGADSLEDFLYH 68
Query: 79 HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSI 138
GY TSIHGDR+Q++REEA
Sbjct: 69 EGYACTSIHGDRSQRDREEA---------------------------------------- 88
Query: 139 HGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGR 198
L +FRSG++PILVATAVAARGLDI +VKHVINFDLPSD+EEYVHRIGR
Sbjct: 89 ------------LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 136
Query: 199 TGRMGNL 205
TGR+GNL
Sbjct: 137 TGRVGNL 143
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 110/203 (54%), Gaps = 59/203 (29%)
Query: 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLV 61
+A EFL Y+F+AIG VG ++ Q I V++ KRS L+++LS E D T+V
Sbjct: 253 MAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILS-----EQADG--TIV 305
Query: 62 FVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGA 121
FVETK+GAD L FL +P TSIHGDR Q +RE+A
Sbjct: 306 FVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQA----------------------- 342
Query: 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI 181
LR F++G +L+AT+VA+RGLDI ++KHVI
Sbjct: 343 -----------------------------LRDFKNGSMKVLIATSVASRGLDIKNIKHVI 373
Query: 182 NFDLPSDVEEYVHRIGRTGRMGN 204
N+D+PS +++YVHRIGRTGR+GN
Sbjct: 374 NYDMPSKIDDYVHRIGRTGRVGN 396
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 95 REEAQQYTLISCDEAL---TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAL 151
+EEA+ L+ C + L+F E K D + ++L G +IHG + Q+ER +A+
Sbjct: 38 KEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 97
Query: 152 RRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
FR G+ +LVAT VA++GLD P ++HVIN+D+P ++E YVHRIGRTG GN
Sbjct: 98 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGN 150
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT+ +F TK+ D L + + + V+S+HGD QKERE
Sbjct: 259 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 318
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 319 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 372
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT+ +F TK+ D L + + + V+S+HGD QKERE
Sbjct: 222 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 281
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 282 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 335
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT+ +F TK+ D L + + + V+S+HGD QKERE
Sbjct: 259 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 318
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 319 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 372
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT+ +F TK+ D L + + + V+S+HGD QKERE
Sbjct: 258 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 317
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 318 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 371
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT+ +F TK+ D L + + + V+S+HGD QKERE
Sbjct: 222 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 281
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 282 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 335
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL + LT+ +F TK+ D L + + + V+S+HGD QKERE
Sbjct: 237 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 296
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ FRSG + +L++T V ARGLD+P V +IN+DLP++ E Y+HRIGR+GR G
Sbjct: 297 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 350
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 61/94 (64%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++F TK+ +QL D L GYP IHG Q++R + + F+ GE LVAT VAAR
Sbjct: 38 CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 97
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
G+DI ++ VIN+DLP + E YVHR GRTGR GN
Sbjct: 98 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGN 131
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++FV TKK A+ L L G+ V+ +HGD +ER+ + FR G + +L+ T V AR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 171 GLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMG 203
G+DIP V V+N+DLP+ D Y+HRIGRTGR G
Sbjct: 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFG 344
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++FV TKK A+ L L G+ V+ +HGD +ER+ + FR G + +L+ T V AR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 171 GLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMG 203
G+DIP V V+N+DLP+ D Y+HRIGRTGR G
Sbjct: 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFG 344
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++FV TKK A+ L L G+ V+ +HGD +ER+ + FR G + +L+ T V AR
Sbjct: 38 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 97
Query: 171 GLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMG 203
G+DIP V V+N+DLP+ D Y+HRIGRTGR G
Sbjct: 98 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFG 136
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 91 TQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 150
+ ER EA L+ E LVF +TK+ +L L G+ +IHGD +Q +RE+
Sbjct: 222 NENERFEAL-CRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKV 280
Query: 151 LRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
+R F+ + IL+AT V +RG+D+ + VIN+ LP + E Y HRIGRTGR G
Sbjct: 281 IRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAG 333
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++FV TKK A+ L L G+ V+ +HGD +ER+ + FR G + +L+ T V AR
Sbjct: 40 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 99
Query: 171 GLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMG 203
G+DIP V V+N+DLP+ D Y+HRIGRTGR G
Sbjct: 100 GIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFG 138
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++FV TKK A+ L L G+ V+ +HGD +ER+ + FR G + +L+ T V AR
Sbjct: 39 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 98
Query: 171 GLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMG 203
G+DIP V V+N+DLP+ D Y+HRIGRTGR G
Sbjct: 99 GIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFG 137
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL E LT+ +F+ T++ D L + +H + V+++HGD QKER+
Sbjct: 236 EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDV 295
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 195
+R FRSG + +L+ T + ARG+D+ V VIN+DLP++ E Y+HR
Sbjct: 296 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 341
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 52/135 (38%)
Query: 60 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKK 119
++F+ T++ D L + +H + V+++HGD QKER+ ++ E +
Sbjct: 258 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERD---------------VIMREFRS 302
Query: 120 GADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKH 179
G+ + +L+ T + ARG+D+ V
Sbjct: 303 GSSR-------------------------------------VLITTDLLARGIDVQQVSL 325
Query: 180 VINFDLPSDVEEYVH 194
VIN+DLP++ E Y+H
Sbjct: 326 VINYDLPTNRENYIH 340
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 94 EREEAQQYTLISCDEALTL----VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 149
EREE + TL E LT+ +F+ T++ D L + +H + V+++HGD QKER+
Sbjct: 262 EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDV 321
Query: 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 195
+R FRSG + +L+ T + ARG+D+ V VIN+DLP++ E Y+HR
Sbjct: 322 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 367
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 59/194 (30%)
Query: 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTL 60
+ K+F+ I + + + T E I Q V+ ++ K L DL + + + +
Sbjct: 231 VTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ------AV 284
Query: 61 VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKG 120
+F+ T++ D L + +H + V+++HGD QKER+ ++ E + G
Sbjct: 285 IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERD---------------VIMREFRSG 329
Query: 121 ADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHV 180
+ + +L+ T + ARG+D+ V V
Sbjct: 330 SSR-------------------------------------VLITTDLLARGIDVQQVSLV 352
Query: 181 INFDLPSDVEEYVH 194
IN+DLP++ E Y+H
Sbjct: 353 INYDLPTNRENYIH 366
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++VFV ++ +L ++L G + G+ Q +R EA++R G +LVAT VAAR
Sbjct: 33 SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
G+DIP V HV NFD+P + Y+HRIGRT R G
Sbjct: 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 125
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 112 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARG 171
++F +T++ A L + G+ V+ + G+ T ++R ++RFR G+ +L+ T V ARG
Sbjct: 38 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97
Query: 172 LDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMGNLDFPF 209
+D+ V V+NFDLP D E Y+HRIGRTGR G F
Sbjct: 98 IDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 141
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA 168
A ++F T+K A L L G+ V + G+ ++R + RFR G+ +LV T V
Sbjct: 334 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 393
Query: 169 ARGLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMG 203
ARG+D+ V VINFDLP D E Y+HRIGRTGR G
Sbjct: 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG 434
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA 168
A ++F T+K A L L G+ V + G+ ++R + RFR G+ +LV T V
Sbjct: 304 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 363
Query: 169 ARGLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMG 203
ARG+D+ V VINFDLP D E Y+HRIGRTGR G
Sbjct: 364 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG 404
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA 168
A ++F T+K A L L G+ V + G+ ++R + RFR G+ +LV T V
Sbjct: 283 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 342
Query: 169 ARGLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMG 203
ARG+D+ V VINFDLP D E Y+HRIGRTGR G
Sbjct: 343 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG 383
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA 168
A ++F T+K A L L G+ V + G+ ++R + RFR G+ +LV T V
Sbjct: 267 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 326
Query: 169 ARGLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMG 203
ARG+D+ V VINFDLP D E Y+HRIGRTGR G
Sbjct: 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG 367
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+VFV T+ +L + + GD Q R + FR GE +L+ T VA+R
Sbjct: 223 VIVFVRTRNRVAKLVRLFDN----AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASR 278
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
GLDIP V+ VINFD P D+ Y+HRIGRTGRMG
Sbjct: 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMG 311
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Query: 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160
Y IS +A+ +F T++ ++L L + + V++I+ D Q+ER+ ++ FRSG +
Sbjct: 25 YDSISVTQAV--IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82
Query: 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 195
IL++T + ARG+D+ V VIN+DLP++ E Y+HR
Sbjct: 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 117
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+VF TK +++ L G+P ++HGD +Q ERE L FR GE +LVAT VAAR
Sbjct: 34 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93
Query: 171 GLDIPHVKHVINFDLPSDVEEYVH 194
GLDIP V V+++ LP E Y H
Sbjct: 94 GLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 103 LISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL 162
+ S D A+ VF TK +++ L G+P ++HGD +Q ERE + FR GE +L
Sbjct: 25 VASPDRAM--VFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82
Query: 163 VATAVAARGLDIPHVKHVINFDLPSDVEEYVH 194
VAT VAARGLDIP V V+++ +P E Y H
Sbjct: 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKERE 96
+VF TK +++ L G+P ++HGD +Q ERE
Sbjct: 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERE 68
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Query: 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160
Y IS +A+ +F T++ ++L L + + V++I+ D Q+ER+ ++ FRSG +
Sbjct: 255 YDSISVTQAV--IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 312
Query: 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 195
IL++T + ARG+D+ V VIN+DLP++ E Y+HR
Sbjct: 313 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 347
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 111 TLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167
++F T K L L + P+ HG TQ +R ++RF+ E+ ILV T V
Sbjct: 36 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 95
Query: 168 AARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
ARG+D P+V V+ +PS++ Y+HRIGRT R G
Sbjct: 96 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 132
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 111 TLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167
++F T K L L + P+ HG TQ +R ++RF+ E+ ILV T V
Sbjct: 36 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 95
Query: 168 AARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
ARG+D P+V V+ +PS++ Y+HRIGRT R G
Sbjct: 96 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 132
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 111 TLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167
++F T K L L + P+ HG TQ +R ++RF+ E+ ILV T V
Sbjct: 36 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 95
Query: 168 AARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
ARG+D P+V V+ +PS++ Y+HRIGRT R G
Sbjct: 96 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGK 132
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 111 TLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167
++F T K L L + P+ HG TQ +R ++RF+ E+ ILV T V
Sbjct: 291 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 350
Query: 168 AARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
ARG+D P+V V+ +PS++ Y+HRIGRT R G
Sbjct: 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 386
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 111 TLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167
++F T K L L + P+ HG TQ +R ++RF+ E+ ILV T V
Sbjct: 291 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 350
Query: 168 AARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
ARG+D P+V V+ +PS++ Y+HRIGRT R G
Sbjct: 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 386
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 112 LVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA 168
++F T K L L + P+ HG TQ +R ++RF+ E+ ILV T V
Sbjct: 343 IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG 402
Query: 169 ARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
ARG+D P+V V+ +PS++ Y+HRIGRT R G
Sbjct: 403 ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 437
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160
Y IS +A+ +F T++ ++L L + + V++I+ D Q+ER+ + FRSG +
Sbjct: 254 YDSISVTQAV--IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSR 311
Query: 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 195
IL++T + ARG+D+ V VIN+DLP++ E Y+HR
Sbjct: 312 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++F + + + L + GY IH Q+ R FR+G LV T + R
Sbjct: 47 SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTR 106
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 205
G+DI V VINFD P E Y+HRIGR+GR G+L
Sbjct: 107 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 141
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%)
Query: 112 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARG 171
++F + + L + GY H Q+ER + FR G+ LV + + RG
Sbjct: 262 IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321
Query: 172 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 205
+DI V VINFD P E Y+HRIGR+GR G+L
Sbjct: 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL 355
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
+++F + K A+++ + G+ V + G+ +R+ + FR G + +LV T V AR
Sbjct: 360 SIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419
Query: 171 GLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMGNL 205
G+D+ V V+N+D+P D + Y+HRIGRTGR G +
Sbjct: 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV 460
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++FV++ + L L +P +IH Q+ER ++F+ + ILVAT + R
Sbjct: 34 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
G+DI V N+D+P D + Y+HR+ R GR G
Sbjct: 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 126
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++FV++ + L L +P +IH Q+ER ++F+ + ILVAT + R
Sbjct: 253 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 312
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
G+DI V N+D+P D + Y+HR+ R GR G
Sbjct: 313 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++FV++ + L L +P +IH Q+ER ++F+ + ILVAT + R
Sbjct: 252 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 311
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
G+DI V N+D+P D + Y+HR+ R GR G
Sbjct: 312 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 344
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
++FV++ + L L +P +IH Q+ER ++F+ + ILVAT + R
Sbjct: 253 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 312
Query: 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
G+DI V N+D+P D + Y+HR+ R GR G
Sbjct: 313 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 112 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARG 171
+++ ++ + L G + H R + +F+ + I+VAT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXG 299
Query: 172 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ P+V+ V++FD+P ++E Y GR GR G
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 112 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARG 171
+++ ++ + L G + H R + +F+ + I+VAT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299
Query: 172 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
++ P+V+ V++FD+P ++E Y GR GR G
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV TKK A+ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGN 204
GLDIP V V D +D E + + IGR R N
Sbjct: 508 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARNAN 546
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97
TLV TKK A+ L D+L G V +H + ER E
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIE 486
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV TKK A+ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGN 204
GLDIP V V D +D E + + IGR R N
Sbjct: 508 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARNAN 546
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97
TLV TKK A+ L D+L G V +H + ER E
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIE 486
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV TKK A+ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 447 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 506
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGN 204
GLDIP V V D +D E + + IGR R N
Sbjct: 507 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARNAN 545
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97
TLV TKK A+ L D+L G V +H + ER E
Sbjct: 447 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIE 485
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV TKK A+ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGN 204
GLDIP V V D +D E + + IGR R N
Sbjct: 508 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARNAN 546
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97
TLV TKK A+ L D+L G V +H + ER E
Sbjct: 448 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIE 486
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV TKK A+ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 473 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 532
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGN 204
GLDIP V V D +D E + + IGR R N
Sbjct: 533 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARNAN 571
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97
TLV TKK A+ L D+L G V +H + ER E
Sbjct: 473 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIE 511
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Query: 31 WVDEQDKRSCLL-DLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGD 89
+ +E+DK+ ++ D L P + + D L +F E K +L + + +T +
Sbjct: 330 YNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNT 389
Query: 90 RTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFL------------HHH--GYPV 135
+ QYT + A ++F +T++ A L ++ HH G
Sbjct: 390 IME-------QYTRTE-ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGH 441
Query: 136 TSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 195
+S TQ E++E + +FR+G+ +L+AT VA GLDI VI + L ++ V
Sbjct: 442 SSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQA 501
Query: 196 IGR 198
GR
Sbjct: 502 RGR 504
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%)
Query: 112 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARG 171
+++ ++K ++Q+ L + G + H + +++ R++ + E ++VAT G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330
Query: 172 LDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201
+D P V+ VI+ + +E Y GR GR
Sbjct: 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGR 360
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
LV TKK ++ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 454 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 513
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGR 201
GLDIP V V D +D E + + IGR R
Sbjct: 514 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAAR 549
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
LV TKK ++ L D+L G V +H + ER E +R R G+ +LV +
Sbjct: 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGR 201
GLDIP V V D +D E + + IGR R
Sbjct: 508 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAAR 543
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 112 LVFVETKKGADQLEDFLHHHGYPVTSIHG------DR--TQKEREEALRRFRSGETPILV 163
+VF ++ A ++ + L G G DR +Q+E++ L F GE +LV
Sbjct: 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLV 424
Query: 164 ATAVAARGLDIPHVKHVINFD-LPSDVEEYVHRIGRTGR 201
AT+V GLD+P V V+ ++ +PS + + R GRTGR
Sbjct: 425 ATSVGEEGLDVPEVDLVVFYEPVPSAIRS-IQRRGRTGR 462
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 25/169 (14%)
Query: 31 WVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 90
+ DE++K+ ++LS + D L +F+ KK +L + + +T +
Sbjct: 84 YNDEKEKK---FEVLSGSGSLDESDIFLXTLFLRNKKILKKLAENPEYENEKLTKL---- 136
Query: 91 TQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFL------------HHH--GYPVT 136
R ++ + + A ++F +T++ A L ++ HH G +
Sbjct: 137 ----RNTIXEHFTRTEESARGIIFTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHS 192
Query: 137 SIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL 185
S TQ E+ E + +FR+G+ +L+AT VA GLDI VI + L
Sbjct: 193 SEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL 241
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 2 LAKEFLYRYIFLAIGRVGSTSENITQRI 29
LA +FLY YIF+ +GRVGSTS++I Q I
Sbjct: 226 LAADFLYNYIFMTVGRVGSTSDSIKQEI 253
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV V T + A++L FL HG +H + +R+ +R R G LV +
Sbjct: 443 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLRE 502
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGR 201
GLDIP V V D +D E + + IGR R
Sbjct: 503 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAAR 538
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170
TLV V T + A++L FL HG +H + +R+ +R R G LV +
Sbjct: 442 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLRE 501
Query: 171 GLDIPHVKHVINFDLPSDVEEY-------VHRIGRTGR 201
GLDIP V V D +D E + + IGR R
Sbjct: 502 GLDIPEVSLVAILD--ADKEGFLRSERSLIQTIGRAAR 537
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 96 EEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHG--------YPVTSIHGDRTQKER 147
EEA++ S ++ L + + D++ F H+ + + +I +++ER
Sbjct: 324 EEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREER 383
Query: 148 EEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201
EE L FR+G +V++ V G+D+P + EY+ R+GR R
Sbjct: 384 EEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 437
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 96 EEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHG--------YPVTSIHGDRTQKER 147
EEA++ S ++ L + + D++ F H+ + + +I +++ER
Sbjct: 89 EEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREER 148
Query: 148 EEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201
EE L FR+G +V++ V G+D+P + EY+ R+GR R
Sbjct: 149 EEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 202
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 37/211 (17%)
Query: 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQ 92
+++ R C L + + D + K D L+DF + I D TQ
Sbjct: 291 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 350
Query: 93 KEREEAQQYTLISCD-----------------------EALTLVFVETKKGADQLEDFLH 129
+ E+ Q+ +S D E +T++FV+T+ D L++++
Sbjct: 351 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE 410
Query: 130 HH------------GYPVTSIHGDRTQKEREEALRRFR-SGETPILVATAVAARGLDIPH 176
+ G T+ + T ++ L F+ SG+ IL+AT+VA G+DI
Sbjct: 411 GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 470
Query: 177 VKHVINFDLPSDVEEYVHRIGRTGRMGNLDF 207
VI ++ +V + + GR G+ F
Sbjct: 471 CNLVILYEYVGNVIKMIQTRGRGRARGSKCF 501
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 37/211 (17%)
Query: 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQ 92
+++ R C L + + D + K D L+DF + I D TQ
Sbjct: 300 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 359
Query: 93 KEREEAQQYTLISCD-----------------------EALTLVFVETKKGADQLEDFLH 129
+ E+ Q+ +S D E +T++FV+T+ D L++++
Sbjct: 360 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE 419
Query: 130 HH------------GYPVTSIHGDRTQKEREEALRRFR-SGETPILVATAVAARGLDIPH 176
+ G T+ + T ++ L F+ SG+ IL+AT+VA G+DI
Sbjct: 420 GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479
Query: 177 VKHVINFDLPSDVEEYVHRIGRTGRMGNLDF 207
VI ++ +V + + GR G+ F
Sbjct: 480 CNLVILYEYVGNVIKMIQTRGRGRARGSKCF 510
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 37/211 (17%)
Query: 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQ 92
+++ R C L + + D + K D L+DF + I D TQ
Sbjct: 299 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 358
Query: 93 KEREEAQQYTLISCD-----------------------EALTLVFVETKKGADQLEDFLH 129
+ E+ Q+ +S D E +T++FV+T+ D L++++
Sbjct: 359 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE 418
Query: 130 HH------------GYPVTSIHGDRTQKEREEALRRFR-SGETPILVATAVAARGLDIPH 176
+ G T+ + T ++ L F+ SG+ IL+AT+VA G+DI
Sbjct: 419 GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 478
Query: 177 VKHVINFDLPSDVEEYVHRIGRTGRMGNLDF 207
VI ++ +V + + GR G+ F
Sbjct: 479 CNLVILYEYVGNVIKMIQTRGRGRARGSKCF 509
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 119 KGADQLEDFLHHHGYP---VTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP 175
K A ++ ++L +P + +HG +Q+E++ + F G ILV+T V G+D+P
Sbjct: 597 KSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVP 656
Query: 176 HVKHVINFDLPSDVE-EYVHRI-GRTGRMGNLDFPF 209
+V+ + P +H++ GR GR G + F
Sbjct: 657 RA-NVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 691
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 100 QYTLISCDEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRFRSGE 158
Q L+ C +A T A QLE L G H + ER+ A F +
Sbjct: 504 QKVLVICAKAAT---------ALQLEQVLREREGIRAAVFHEGXSIIERDRAAAWFAEED 554
Query: 159 T--PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
T +L+ + + + G + H + FDLP + + RIGR R+G
Sbjct: 555 TGAQVLLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIG 601
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 108 EALTLVFVETKKGADQLEDFLHHH------------GYPVTSIHGDRTQKEREEALRRFR 155
E T++FV+T+ D L+ ++ + G T+ T ++ L FR
Sbjct: 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFR 448
Query: 156 -SGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201
SG+ IL+AT+VA G+DI VI ++ +V + + GR GR
Sbjct: 449 ASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GR 494
>pdb|3H1T|A Chain A, The Fragment Structure Of A Putative Hsdr Subunit Of A
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 590
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA-------LRRFRSGET-- 159
A T+VF ++ AD+ L++ ++ H D + E L RF+ ET
Sbjct: 440 AKTIVFCVDQEHADEXRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETST 499
Query: 160 PILVATA-VAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202
P+++ T+ + G+D P K+V+ + + E+ +GR R+
Sbjct: 500 PVILTTSQLLTTGVDAPTCKNVVLARVVNSXSEFKQIVGRGTRL 543
>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine
Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex
With An Indirubin Ligand
Length = 429
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 30/101 (29%)
Query: 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYP----VTS--- 85
DE D+ +C+++LL PSQ+ L + + ++F+ GYP VT+
Sbjct: 303 DEGDQLACMIELLGMPSQKLL-------------DASKRAKNFVSXKGYPRYCTVTTLSD 349
Query: 86 ----IHGDRTQKER----EEAQQY--TLISCDEALTLVFVE 116
++G R+++ + E++++ L CD+ L L F++
Sbjct: 350 GSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLK 390
>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41
Length = 417
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 30/101 (29%)
Query: 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYP----VTS--- 85
DE D+ +C+++LL PSQ+ L + + ++F+ GYP VT+
Sbjct: 303 DEGDQLACMIELLGMPSQKLL-------------DASKRAKNFVSXKGYPRYCTVTTLSD 349
Query: 86 ----IHGDRTQKER----EEAQQY--TLISCDEALTLVFVE 116
++G R+++ + E++++ L CD+ L L F++
Sbjct: 350 GSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLK 390
>pdb|2BVB|A Chain A, The C-Terminal Domain From Micronemal Protein 1 (Mic1)
From Toxoplasma Gondii
Length = 137
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 84 TSIHGDRTQKEREEAQQYTLISCDEALTLVFVETK 118
T IHGD T+ EE QQ LTL F+ TK
Sbjct: 2 TEIHGDSTKATLEEGQQ---------LTLTFISTK 27
>pdb|2K2S|A Chain A, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
Length = 136
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 84 TSIHGDRTQKEREEAQQYTLISCDEALTLVFVETK 118
T IHGD T+ EE QQ LTL F+ TK
Sbjct: 2 TEIHGDSTKATLEEGQQ---------LTLTFISTK 27
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 156 SGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
S + +L+AT+VA G+DI V+ ++ +V + + GR G+
Sbjct: 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGS 740
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 156 SGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204
S + +L+AT+VA G+DI V+ ++ +V + + GR G+
Sbjct: 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGS 740
>pdb|4FPP|A Chain A, Bacterial Phosphotransferase
pdb|4FPP|B Chain B, Bacterial Phosphotransferase
pdb|4FPP|C Chain C, Bacterial Phosphotransferase
Length = 247
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 42 LDLLSSPSQEELGDEALTLVFVETKKGADQLE 73
LDLL PS +++ D+A+ L+ +K AD L+
Sbjct: 68 LDLLEDPSAQDMRDDAMNLIASSARKLADLLQ 99
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 99 QQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE 158
Q T + D L+F + + D L D+L G + G +R ++ F S +
Sbjct: 563 QLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622
Query: 159 TP---ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203
+ L++T G+++ V+ FD + + + + R R+G
Sbjct: 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670
>pdb|4FMT|A Chain A, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
pdb|4FMT|B Chain B, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
pdb|4FMT|C Chain C, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
pdb|4FMT|D Chain D, Crystal Structure Of A Chpt Protein (Cc_3470) From
Caulobacter Crescentus Cb15 At 2.30 A Resolution
Length = 228
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 42 LDLLSSPSQEELGDEALTLVFVETKKGADQLE 73
LDLL PS +++ D+A+ L+ +K AD L+
Sbjct: 49 LDLLEDPSAQDMRDDAMNLIASSARKLADLLQ 80
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 156 SGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201
S + +L+AT+VA G+DI V+ ++ +V + + GR GR
Sbjct: 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 495
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 133 YPVTSIHGDRTQKEREEALRRFRSGETPIL 162
+PV+S++ + R AL ++R GETP+L
Sbjct: 203 HPVSSVNKKQDPVIRVAALAQYRKGETPVL 232
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 139 HGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI-----NFDLPSDVEEYV 193
HG ++E E + F +LV T + G+DIP +I +F L + + +
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL-AQLHQLR 903
Query: 194 HRIGRT 199
R+GR+
Sbjct: 904 GRVGRS 909
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 QLEDFLHHHGYPVTSI--HGDRTQKER-----EEAQQYTLISCDEALTLVFVETKKGADQ 123
Q+ +FL ++G PV I D+ K + + +Q I ++ L L ETKKG D+
Sbjct: 125 QMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,913,313
Number of Sequences: 62578
Number of extensions: 269725
Number of successful extensions: 977
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 135
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)