Query psy15610
Match_columns 237
No_of_seqs 146 out of 2004
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:06:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0333|consensus 100.0 1.9E-30 4E-35 218.9 14.9 163 1-221 468-630 (673)
2 KOG0328|consensus 100.0 8.3E-31 1.8E-35 206.3 11.8 159 2-218 217-376 (400)
3 KOG0331|consensus 100.0 8.9E-31 1.9E-35 224.9 12.4 162 1-217 287-450 (519)
4 KOG0326|consensus 100.0 1.6E-30 3.4E-35 207.8 8.4 159 2-219 275-433 (459)
5 COG0513 SrmB Superfamily II DN 100.0 3.3E-29 7.2E-34 221.3 15.7 157 1-215 221-380 (513)
6 PRK04837 ATP-dependent RNA hel 100.0 8.1E-28 1.8E-32 209.0 13.6 158 2-217 207-364 (423)
7 KOG0330|consensus 100.0 4E-28 8.7E-33 198.4 10.3 161 2-220 252-412 (476)
8 KOG0332|consensus 99.9 2.1E-27 4.6E-32 193.2 13.5 158 2-217 281-445 (477)
9 PRK11776 ATP-dependent RNA hel 99.9 6E-27 1.3E-31 205.6 16.3 157 2-217 195-351 (460)
10 PTZ00110 helicase; Provisional 99.9 2.2E-26 4.8E-31 205.0 17.4 161 2-218 325-487 (545)
11 PRK10590 ATP-dependent RNA hel 99.9 2.1E-26 4.5E-31 201.8 15.7 158 2-217 197-354 (456)
12 PRK04537 ATP-dependent RNA hel 99.9 1.9E-26 4E-31 206.3 15.6 157 2-216 209-365 (572)
13 PRK11192 ATP-dependent RNA hel 99.9 3E-26 6.4E-31 199.9 16.2 158 2-217 196-354 (434)
14 PRK11634 ATP-dependent RNA hel 99.9 2.6E-26 5.6E-31 206.7 16.2 158 2-217 197-354 (629)
15 PLN00206 DEAD-box ATP-dependen 99.9 2.9E-26 6.3E-31 203.4 15.8 164 2-221 317-481 (518)
16 PRK01297 ATP-dependent RNA hel 99.9 7.4E-26 1.6E-30 199.4 17.1 157 2-216 287-443 (475)
17 KOG0335|consensus 99.9 2.9E-26 6.4E-31 194.3 13.5 186 2-236 279-469 (482)
18 KOG0345|consensus 99.9 7.1E-26 1.5E-30 189.1 12.8 160 1-218 204-367 (567)
19 KOG0342|consensus 99.9 8.3E-26 1.8E-30 189.6 10.1 167 2-225 278-447 (543)
20 PTZ00424 helicase 45; Provisio 99.9 8.5E-25 1.8E-29 189.0 15.2 166 2-225 218-384 (401)
21 KOG0343|consensus 99.9 8.2E-25 1.8E-29 186.0 13.5 159 1-217 262-424 (758)
22 KOG0327|consensus 99.9 3.8E-25 8.3E-30 180.9 9.6 162 2-223 217-378 (397)
23 TIGR00614 recQ_fam ATP-depende 99.9 3.2E-24 6.9E-29 188.6 16.2 166 55-220 161-338 (470)
24 KOG0336|consensus 99.9 1.1E-24 2.3E-29 179.7 10.8 167 1-224 414-581 (629)
25 PLN03137 ATP-dependent DNA hel 99.9 4.1E-24 8.8E-29 197.4 15.6 164 55-219 615-791 (1195)
26 KOG0340|consensus 99.9 5.2E-24 1.1E-28 172.6 11.9 153 10-217 211-363 (442)
27 KOG0341|consensus 99.9 2E-24 4.3E-29 177.1 8.4 158 2-218 374-531 (610)
28 TIGR03817 DECH_helic helicase/ 99.9 2.1E-23 4.6E-28 191.2 15.1 188 29-218 160-389 (742)
29 PRK11057 ATP-dependent DNA hel 99.9 1.4E-23 3.1E-28 189.3 13.7 115 106-220 234-348 (607)
30 COG0514 RecQ Superfamily II DN 99.9 1.1E-22 2.3E-27 178.2 17.1 162 56-218 166-340 (590)
31 TIGR01389 recQ ATP-dependent D 99.9 5.2E-23 1.1E-27 185.7 13.9 113 108-220 224-336 (591)
32 KOG0346|consensus 99.9 1.6E-22 3.5E-27 168.0 11.8 164 2-222 218-417 (569)
33 KOG0344|consensus 99.9 2.3E-22 4.9E-27 172.3 11.8 166 2-225 338-505 (593)
34 KOG4284|consensus 99.9 9E-23 2E-27 176.4 8.7 164 2-223 216-388 (980)
35 KOG0347|consensus 99.9 8E-24 1.7E-28 179.9 1.8 156 8-222 422-577 (731)
36 KOG0348|consensus 99.9 2.7E-22 5.9E-27 170.2 10.9 167 1-221 347-560 (708)
37 KOG0338|consensus 99.9 5.1E-22 1.1E-26 167.7 9.9 163 1-221 374-539 (691)
38 cd00079 HELICc Helicase superf 99.9 9.4E-21 2E-25 138.3 13.3 104 108-211 28-131 (131)
39 PRK13767 ATP-dependent helicas 99.9 1.6E-20 3.4E-25 175.4 16.9 159 55-213 206-396 (876)
40 KOG0334|consensus 99.8 7.9E-21 1.7E-25 172.1 12.2 158 2-216 563-721 (997)
41 PRK04914 ATP-dependent helicas 99.8 1.2E-20 2.6E-25 175.0 13.6 110 107-216 492-604 (956)
42 KOG0339|consensus 99.8 1.1E-20 2.4E-25 159.6 11.0 177 1-234 417-598 (731)
43 PRK02362 ski2-like helicase; P 99.8 3E-20 6.4E-25 171.5 13.8 161 55-215 170-397 (737)
44 PRK09751 putative ATP-dependen 99.8 7.1E-20 1.5E-24 175.1 16.6 158 54-212 157-382 (1490)
45 PRK12898 secA preprotein trans 99.8 4.1E-20 8.8E-25 164.8 14.0 156 2-217 425-588 (656)
46 PHA02653 RNA helicase NPH-II; 99.8 7.5E-20 1.6E-24 164.9 13.3 186 29-217 294-516 (675)
47 PF00271 Helicase_C: Helicase 99.8 8E-20 1.7E-24 121.7 8.5 78 126-203 1-78 (78)
48 COG1111 MPH1 ERCC4-like helica 99.8 2.1E-19 4.4E-24 152.3 12.7 111 106-217 364-483 (542)
49 KOG0350|consensus 99.8 7.1E-20 1.5E-24 154.4 9.0 148 20-225 399-550 (620)
50 TIGR00580 mfd transcription-re 99.8 9.9E-19 2.1E-23 162.7 15.7 110 107-216 659-771 (926)
51 PRK10689 transcription-repair 99.8 1.5E-18 3.3E-23 164.6 16.4 108 108-215 809-919 (1147)
52 PRK00254 ski2-like helicase; P 99.8 5.3E-19 1.1E-23 162.9 12.8 162 55-216 168-389 (720)
53 COG1201 Lhr Lhr-like helicases 99.8 8.1E-19 1.7E-23 159.1 13.1 159 56-214 183-361 (814)
54 PRK10917 ATP-dependent DNA hel 99.8 4.8E-18 1E-22 155.2 17.8 108 106-213 469-587 (681)
55 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.5E-18 3.3E-23 159.9 13.8 109 108-217 209-338 (819)
56 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.5E-18 5.5E-23 156.6 14.8 102 108-214 272-390 (844)
57 PRK09200 preprotein translocas 99.8 1.1E-18 2.3E-23 158.7 12.3 108 108-217 428-543 (790)
58 KOG0351|consensus 99.8 1.4E-18 3E-23 160.4 12.6 164 57-220 421-597 (941)
59 PRK01172 ski2-like helicase; P 99.8 2.3E-18 4.9E-23 157.9 13.8 161 54-215 167-378 (674)
60 COG1202 Superfamily II helicas 99.8 1.6E-18 3.5E-23 148.7 11.8 177 37-218 358-556 (830)
61 TIGR01587 cas3_core CRISPR-ass 99.8 9.5E-18 2.1E-22 143.0 16.1 107 106-215 220-336 (358)
62 TIGR00643 recG ATP-dependent D 99.8 2E-17 4.3E-22 150.2 18.6 108 106-213 446-564 (630)
63 PRK11664 ATP-dependent RNA hel 99.8 2E-18 4.4E-23 159.2 12.2 109 108-217 212-341 (812)
64 PRK13766 Hef nuclease; Provisi 99.8 1.2E-17 2.6E-22 155.5 13.8 110 107-217 364-481 (773)
65 TIGR03714 secA2 accessory Sec 99.7 1.5E-17 3.2E-22 150.3 12.3 107 108-217 424-539 (762)
66 TIGR00631 uvrb excinuclease AB 99.7 2.7E-17 5.9E-22 148.7 13.4 108 108-216 442-554 (655)
67 KOG0337|consensus 99.7 4.1E-18 8.9E-23 141.3 6.8 165 2-223 212-376 (529)
68 smart00490 HELICc helicase sup 99.7 3E-17 6.5E-22 109.8 9.1 81 123-203 2-82 (82)
69 PRK05298 excinuclease ABC subu 99.7 5.2E-17 1.1E-21 147.5 13.3 106 108-214 446-556 (652)
70 PHA02558 uvsW UvsW helicase; P 99.7 6.3E-17 1.4E-21 143.4 13.0 111 107-217 343-454 (501)
71 TIGR00963 secA preprotein tran 99.7 1E-16 2.3E-21 144.1 13.8 108 108-217 405-519 (745)
72 KOG0352|consensus 99.7 2.2E-17 4.9E-22 137.4 7.1 113 109-221 256-368 (641)
73 PRK12906 secA preprotein trans 99.7 1.8E-16 3.8E-21 143.7 12.4 108 108-217 440-555 (796)
74 TIGR00603 rad25 DNA repair hel 99.7 1.9E-16 4E-21 143.1 12.1 109 107-220 495-612 (732)
75 PRK11131 ATP-dependent RNA hel 99.7 3.4E-16 7.4E-21 148.0 12.2 106 108-216 286-412 (1294)
76 TIGR01967 DEAH_box_HrpA ATP-de 99.7 7.7E-16 1.7E-20 146.0 14.2 158 55-216 210-405 (1283)
77 PLN03142 Probable chromatin-re 99.7 3.4E-16 7.3E-21 146.3 11.0 106 107-212 486-594 (1033)
78 KOG0354|consensus 99.7 5.6E-16 1.2E-20 138.2 11.4 107 105-213 410-527 (746)
79 COG1204 Superfamily II helicas 99.7 5.6E-16 1.2E-20 141.8 10.9 160 56-215 180-408 (766)
80 PRK12900 secA preprotein trans 99.7 7E-16 1.5E-20 141.2 11.1 108 108-217 598-713 (1025)
81 KOG0349|consensus 99.6 2.9E-15 6.2E-20 125.2 13.3 196 2-219 418-619 (725)
82 KOG0329|consensus 99.6 3.9E-17 8.5E-22 127.7 1.4 123 2-217 234-357 (387)
83 PRK14701 reverse gyrase; Provi 99.6 2.5E-15 5.3E-20 146.4 13.4 140 4-208 286-449 (1638)
84 KOG0948|consensus 99.6 4.7E-16 1E-20 137.0 5.3 182 53-236 263-558 (1041)
85 KOG0353|consensus 99.6 1.4E-15 3.1E-20 125.2 7.5 114 104-217 313-469 (695)
86 KOG0951|consensus 99.6 1.9E-15 4.1E-20 139.1 9.0 179 55-233 473-720 (1674)
87 PRK09401 reverse gyrase; Revie 99.6 1.2E-14 2.7E-19 138.5 12.6 131 5-201 286-430 (1176)
88 COG1200 RecG RecG-like helicas 99.5 1.5E-13 3.2E-18 121.4 13.7 182 29-216 387-592 (677)
89 KOG0392|consensus 99.5 8.2E-14 1.8E-18 128.3 12.5 168 38-215 1268-1454(1549)
90 KOG0952|consensus 99.5 2.1E-14 4.4E-19 130.7 8.0 198 36-233 253-509 (1230)
91 KOG0385|consensus 99.5 4.1E-14 8.9E-19 125.2 8.5 106 106-211 485-593 (971)
92 TIGR03158 cas3_cyano CRISPR-as 99.5 2E-13 4.3E-18 116.2 11.5 84 108-200 272-357 (357)
93 KOG0922|consensus 99.5 1.9E-13 4E-18 119.8 10.2 208 6-220 145-395 (674)
94 COG1197 Mfd Transcription-repa 99.5 4.8E-13 1E-17 124.2 12.9 112 106-217 801-915 (1139)
95 PRK12904 preprotein translocas 99.5 6.8E-13 1.5E-17 121.2 13.6 108 108-217 430-575 (830)
96 COG1061 SSL2 DNA or RNA helica 99.5 5.2E-13 1.1E-17 116.6 12.3 94 107-201 282-375 (442)
97 KOG0950|consensus 99.5 6E-13 1.3E-17 120.5 12.7 164 57-220 378-616 (1008)
98 PRK09694 helicase Cas3; Provis 99.5 2.2E-12 4.8E-17 119.7 16.7 96 106-204 558-664 (878)
99 TIGR01054 rgy reverse gyrase. 99.5 6.8E-13 1.5E-17 126.9 13.1 76 108-187 326-409 (1171)
100 PRK13104 secA preprotein trans 99.5 9.8E-13 2.1E-17 120.5 12.9 108 108-217 444-589 (896)
101 KOG0947|consensus 99.4 5.3E-13 1.1E-17 120.7 10.8 106 109-214 568-722 (1248)
102 COG1205 Distinct helicase fami 99.4 1.8E-12 3.8E-17 120.5 13.2 165 55-219 231-426 (851)
103 KOG0384|consensus 99.4 3.1E-13 6.6E-18 124.7 7.4 109 107-215 698-811 (1373)
104 PRK13107 preprotein translocas 99.4 2.8E-12 6.1E-17 117.3 12.4 108 108-217 449-593 (908)
105 COG1643 HrpA HrpA-like helicas 99.4 3.6E-12 7.9E-17 117.0 11.2 185 29-216 165-388 (845)
106 COG0556 UvrB Helicase subunit 99.4 1.3E-11 2.8E-16 106.0 13.3 157 56-214 386-556 (663)
107 COG4098 comFA Superfamily II D 99.3 5.8E-12 1.3E-16 102.8 9.6 110 105-216 302-417 (441)
108 KOG0923|consensus 99.3 1.2E-11 2.6E-16 108.4 10.4 183 29-213 381-604 (902)
109 KOG0391|consensus 99.3 1.1E-11 2.4E-16 114.0 9.5 107 108-214 1276-1386(1958)
110 TIGR00595 priA primosomal prot 99.3 1.1E-11 2.4E-16 109.8 9.2 159 54-212 196-378 (505)
111 KOG0387|consensus 99.3 1.1E-11 2.3E-16 110.5 8.5 105 107-211 545-652 (923)
112 PRK11448 hsdR type I restricti 99.3 2.4E-11 5.2E-16 115.8 11.3 95 107-203 697-801 (1123)
113 PRK05580 primosome assembly pr 99.3 2.6E-11 5.7E-16 111.0 10.2 163 53-215 363-549 (679)
114 COG1203 CRISPR-associated heli 99.2 1.9E-10 4.1E-15 106.3 13.9 160 55-217 369-552 (733)
115 KOG0388|consensus 99.2 2.5E-11 5.5E-16 107.1 6.9 104 108-211 1044-1148(1185)
116 KOG0390|consensus 99.2 2.8E-10 6E-15 103.1 10.8 103 111-213 598-703 (776)
117 KOG0389|consensus 99.1 1.9E-10 4.2E-15 102.6 8.7 108 108-215 777-888 (941)
118 KOG4150|consensus 99.1 1.5E-10 3.2E-15 100.4 7.4 179 35-216 433-641 (1034)
119 KOG0924|consensus 99.1 2.2E-10 4.8E-15 101.0 8.5 203 5-214 449-696 (1042)
120 KOG0953|consensus 99.1 7.4E-10 1.6E-14 95.7 11.0 144 59-204 307-463 (700)
121 COG4581 Superfamily II RNA hel 99.1 1.7E-10 3.7E-15 107.3 7.3 151 55-217 378-539 (1041)
122 COG0553 HepA Superfamily II DN 99.0 3.8E-09 8.3E-14 99.8 11.2 104 110-213 713-818 (866)
123 KOG0920|consensus 98.9 2.1E-08 4.5E-13 92.7 13.0 190 19-218 282-547 (924)
124 KOG1000|consensus 98.9 9.6E-09 2.1E-13 87.9 9.7 109 104-212 488-598 (689)
125 PRK12903 secA preprotein trans 98.9 1.4E-08 3.1E-13 92.8 10.4 107 108-217 426-541 (925)
126 KOG0386|consensus 98.9 4.8E-09 1E-13 96.0 6.6 106 108-213 726-834 (1157)
127 KOG0949|consensus 98.8 6.6E-09 1.4E-13 95.0 6.7 79 134-212 964-1045(1330)
128 PRK12326 preprotein translocas 98.8 5E-08 1.1E-12 88.1 11.7 109 107-217 426-549 (764)
129 KOG1015|consensus 98.7 3.8E-08 8.2E-13 89.9 8.1 107 108-214 1142-1274(1567)
130 KOG1123|consensus 98.7 8.3E-08 1.8E-12 82.5 8.6 112 108-224 543-662 (776)
131 PRK12901 secA preprotein trans 98.6 1.5E-07 3.2E-12 87.6 9.6 115 101-217 621-743 (1112)
132 PRK13103 secA preprotein trans 98.6 2.2E-07 4.8E-12 85.8 10.0 108 107-217 448-593 (913)
133 PRK12899 secA preprotein trans 98.6 3.4E-07 7.4E-12 84.8 10.4 114 101-217 561-683 (970)
134 COG4096 HsdR Type I site-speci 98.6 2.3E-07 4.9E-12 84.1 9.1 93 108-202 426-525 (875)
135 COG1198 PriA Primosomal protei 98.6 1.7E-07 3.6E-12 85.6 7.5 158 53-213 417-601 (730)
136 KOG1002|consensus 98.5 4.8E-07 1E-11 77.8 7.5 107 108-214 638-748 (791)
137 TIGR01407 dinG_rel DnaQ family 98.4 2.2E-06 4.7E-11 81.1 11.2 110 105-215 671-814 (850)
138 CHL00122 secA preprotein trans 98.4 5.9E-06 1.3E-10 76.3 11.9 114 101-217 417-633 (870)
139 KOG4439|consensus 98.3 4.9E-06 1.1E-10 74.3 9.7 108 104-211 742-852 (901)
140 COG1110 Reverse gyrase [DNA re 98.3 2.6E-06 5.6E-11 79.0 7.7 75 108-187 335-417 (1187)
141 TIGR00348 hsdR type I site-spe 98.3 6.2E-06 1.4E-10 75.9 10.3 94 108-202 514-634 (667)
142 KOG0925|consensus 98.3 1.2E-05 2.7E-10 69.2 10.8 202 5-215 140-387 (699)
143 PRK12902 secA preprotein trans 98.1 2.9E-05 6.4E-10 71.9 11.6 65 108-175 439-506 (939)
144 PF13307 Helicase_C_2: Helicas 98.1 1E-05 2.2E-10 61.6 7.1 105 108-214 9-149 (167)
145 KOG1016|consensus 98.1 1.6E-05 3.5E-10 71.9 8.8 105 108-212 719-844 (1387)
146 KOG0926|consensus 98.0 2.3E-06 5E-11 77.4 2.2 80 135-215 607-704 (1172)
147 KOG0951|consensus 97.9 2.4E-05 5.3E-10 74.0 6.5 169 54-229 1287-1508(1674)
148 COG4889 Predicted helicase [Ge 97.9 6.7E-06 1.5E-10 75.3 2.1 109 109-217 461-588 (1518)
149 COG1199 DinG Rad3-related DNA 97.8 0.00015 3.2E-09 67.0 10.6 156 57-215 404-617 (654)
150 TIGR00604 rad3 DNA repair heli 97.8 0.0002 4.4E-09 66.6 11.4 126 105-236 519-690 (705)
151 PRK08074 bifunctional ATP-depe 97.7 0.00016 3.4E-09 69.2 9.4 117 106-222 750-901 (928)
152 PF13871 Helicase_C_4: Helicas 97.7 0.00014 3.1E-09 59.3 7.1 67 147-213 50-125 (278)
153 PRK07246 bifunctional ATP-depe 97.6 0.00037 8.1E-09 65.7 9.2 107 106-215 645-783 (820)
154 PF06862 DUF1253: Protein of u 97.6 0.0011 2.5E-08 57.6 11.1 111 105-215 297-415 (442)
155 PRK11747 dinG ATP-dependent DN 97.6 0.00091 2E-08 62.1 11.2 105 107-215 533-674 (697)
156 KOG0331|consensus 97.5 0.00011 2.3E-09 64.7 4.6 97 18-124 309-405 (519)
157 COG0653 SecA Preprotein transl 97.5 0.00039 8.4E-09 64.3 7.8 114 101-216 422-546 (822)
158 KOG1001|consensus 97.4 1.4E-05 2.9E-10 73.0 -2.3 102 109-210 540-643 (674)
159 smart00492 HELICc3 helicase su 97.3 0.0048 1E-07 45.5 9.9 79 136-214 25-137 (141)
160 KOG0332|consensus 97.2 0.0019 4.2E-08 54.3 7.9 104 41-157 324-459 (477)
161 smart00491 HELICc2 helicase su 97.1 0.0042 9E-08 45.9 8.2 93 122-214 5-138 (142)
162 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.0067 1.5E-07 55.4 11.0 115 106-222 468-623 (636)
163 TIGR00596 rad1 DNA repair prot 97.0 0.0018 4E-08 60.7 7.2 46 33-78 267-317 (814)
164 TIGR02562 cas3_yersinia CRISPR 96.9 0.006 1.3E-07 58.1 9.2 91 111-204 759-881 (1110)
165 KOG0326|consensus 96.9 0.0013 2.8E-08 54.3 4.0 58 34-100 309-366 (459)
166 PRK10917 ATP-dependent DNA hel 96.6 0.0091 2E-07 55.5 7.9 76 107-182 309-389 (681)
167 KOG0333|consensus 96.6 0.004 8.8E-08 54.6 5.1 78 33-123 503-580 (673)
168 PRK05580 primosome assembly pr 96.3 0.022 4.7E-07 53.0 8.8 75 107-182 189-264 (679)
169 KOG0328|consensus 96.3 0.0056 1.2E-07 49.8 4.1 56 60-119 270-325 (400)
170 TIGR00595 priA primosomal prot 96.2 0.022 4.8E-07 51.0 8.2 74 108-182 25-99 (505)
171 TIGR00643 recG ATP-dependent D 96.0 0.021 4.5E-07 52.7 7.2 76 107-182 283-363 (630)
172 COG1202 Superfamily II helicas 96.0 0.094 2E-06 47.0 10.3 75 24-98 405-482 (830)
173 PRK14873 primosome assembly pr 96.0 0.025 5.4E-07 52.2 7.2 142 54-212 367-536 (665)
174 PRK14873 primosome assembly pr 95.8 0.05 1.1E-06 50.3 8.3 75 107-182 187-263 (665)
175 TIGR00580 mfd transcription-re 95.6 0.04 8.6E-07 52.8 7.4 76 107-182 499-579 (926)
176 COG1198 PriA Primosomal protei 95.4 0.046 9.9E-07 50.8 6.8 74 107-181 244-318 (730)
177 PRK10689 transcription-repair 95.3 0.067 1.5E-06 52.5 7.7 77 106-182 647-728 (1147)
178 COG1110 Reverse gyrase [DNA re 95.1 0.061 1.3E-06 51.1 6.5 64 104-167 121-190 (1187)
179 COG0513 SrmB Superfamily II DN 95.0 0.023 4.9E-07 51.1 3.6 79 33-124 259-337 (513)
180 COG1200 RecG RecG-like helicas 94.9 0.17 3.6E-06 46.3 8.5 78 105-182 308-390 (677)
181 KOG0342|consensus 94.6 0.027 5.8E-07 49.1 2.8 73 39-124 322-394 (543)
182 PRK14701 reverse gyrase; Provi 94.3 0.14 3.1E-06 51.9 7.4 61 107-167 121-187 (1638)
183 PF02399 Herpes_ori_bp: Origin 94.3 0.23 4.9E-06 46.5 8.0 104 107-217 281-390 (824)
184 COG1197 Mfd Transcription-repa 94.2 0.2 4.2E-06 48.5 7.7 77 106-182 641-722 (1139)
185 TIGR03817 DECH_helic helicase/ 94.0 0.15 3.3E-06 48.0 6.6 57 36-100 259-323 (742)
186 KOG0298|consensus 94.0 0.067 1.4E-06 51.8 4.2 96 107-207 1220-1316(1394)
187 KOG4284|consensus 94.0 0.038 8.3E-07 50.0 2.5 80 32-124 257-336 (980)
188 KOG0701|consensus 93.9 0.039 8.4E-07 55.0 2.5 95 109-203 293-399 (1606)
189 KOG1513|consensus 93.6 0.079 1.7E-06 49.1 3.7 56 150-205 849-912 (1300)
190 KOG0335|consensus 93.5 0.14 2.9E-06 45.1 4.8 91 28-122 309-399 (482)
191 PTZ00110 helicase; Provisional 93.4 0.089 1.9E-06 47.7 3.8 76 32-119 360-436 (545)
192 PHA02653 RNA helicase NPH-II; 93.3 0.52 1.1E-05 43.8 8.6 84 4-93 339-434 (675)
193 KOG0330|consensus 93.2 0.15 3.2E-06 43.5 4.5 59 59-121 303-361 (476)
194 PRK11776 ATP-dependent RNA hel 92.8 0.12 2.5E-06 45.9 3.6 57 35-100 230-286 (460)
195 TIGR01054 rgy reverse gyrase. 92.7 0.29 6.3E-06 48.4 6.4 62 106-167 119-187 (1171)
196 PLN03137 ATP-dependent DNA hel 92.7 0.26 5.6E-06 48.0 5.9 68 28-100 656-724 (1195)
197 PRK04837 ATP-dependent RNA hel 92.4 0.15 3.2E-06 44.7 3.7 42 59-100 258-299 (423)
198 TIGR01587 cas3_core CRISPR-ass 92.3 0.34 7.3E-06 41.3 5.8 84 36-124 207-292 (358)
199 KOG0327|consensus 92.3 0.2 4.2E-06 42.6 4.1 40 59-98 266-305 (397)
200 KOG0347|consensus 92.2 0.29 6.3E-06 43.7 5.2 52 111-166 266-321 (731)
201 TIGR00614 recQ_fam ATP-depende 92.2 0.54 1.2E-05 41.8 7.1 60 108-167 51-110 (470)
202 KOG0340|consensus 92.0 0.19 4.1E-06 42.4 3.6 61 59-123 257-317 (442)
203 PRK11192 ATP-dependent RNA hel 91.9 0.19 4.2E-06 44.1 3.8 42 59-100 248-289 (434)
204 PRK04537 ATP-dependent RNA hel 91.8 0.2 4.3E-06 45.8 3.9 42 59-100 260-301 (572)
205 KOG2340|consensus 91.7 0.51 1.1E-05 42.0 6.0 110 108-217 552-670 (698)
206 PRK10590 ATP-dependent RNA hel 91.3 0.2 4.4E-06 44.3 3.3 57 35-100 233-289 (456)
207 PRK11634 ATP-dependent RNA hel 91.2 0.23 5E-06 45.8 3.7 58 34-100 232-289 (629)
208 KOG0921|consensus 90.4 0.39 8.4E-06 45.4 4.3 105 108-213 643-772 (1282)
209 TIGR01389 recQ ATP-dependent D 90.4 1.1 2.4E-05 41.1 7.4 60 108-167 53-112 (591)
210 cd00268 DEADc DEAD-box helicas 89.9 1.8 3.9E-05 33.4 7.3 72 107-182 68-149 (203)
211 COG0514 RecQ Superfamily II DN 89.1 0.71 1.5E-05 42.0 4.9 46 55-100 229-274 (590)
212 PRK01297 ATP-dependent RNA hel 88.2 0.57 1.2E-05 41.7 3.7 40 59-98 338-377 (475)
213 KOG0338|consensus 88.1 2.3 5E-05 37.9 7.2 71 108-182 252-333 (691)
214 KOG0341|consensus 87.9 3.6 7.8E-05 35.5 7.9 42 59-100 424-465 (610)
215 PTZ00424 helicase 45; Provisio 87.4 0.69 1.5E-05 40.0 3.7 42 59-100 270-311 (401)
216 PRK09200 preprotein translocas 87.1 1 2.2E-05 42.5 4.8 119 29-158 405-527 (790)
217 PRK09401 reverse gyrase; Revie 86.3 5.8 0.00012 39.6 9.6 62 105-166 120-187 (1176)
218 TIGR02621 cas3_GSU0051 CRISPR- 85.9 1.2 2.6E-05 42.3 4.6 91 2-98 222-312 (844)
219 PF10593 Z1: Z1 domain; Inter 85.8 2.8 6.1E-05 33.8 6.2 82 132-218 110-196 (239)
220 PRK12898 secA preprotein trans 85.5 1.2 2.7E-05 41.1 4.4 93 59-158 476-572 (656)
221 PRK11057 ATP-dependent DNA hel 85.5 3.2 6.8E-05 38.3 7.1 59 108-166 65-123 (607)
222 TIGR00963 secA preprotein tran 84.8 1.8 4E-05 40.5 5.2 118 30-158 383-503 (745)
223 KOG0383|consensus 84.2 0.52 1.1E-05 43.6 1.4 65 106-171 629-696 (696)
224 TIGR03158 cas3_cyano CRISPR-as 83.8 1.1 2.5E-05 38.3 3.2 74 24-98 240-316 (357)
225 KOG0343|consensus 83.4 5.9 0.00013 35.8 7.4 99 59-160 316-437 (758)
226 cd01524 RHOD_Pyr_redox Member 83.4 2.1 4.5E-05 28.4 3.8 36 108-143 51-86 (90)
227 PRK12906 secA preprotein trans 83.0 3.1 6.7E-05 39.4 5.9 118 30-158 418-539 (796)
228 TIGR00631 uvrb excinuclease AB 81.1 1.7 3.8E-05 40.4 3.6 62 35-100 425-486 (655)
229 KOG1133|consensus 81.0 45 0.00097 31.3 12.1 107 108-217 629-782 (821)
230 KOG0349|consensus 80.5 3.2 6.9E-05 36.3 4.6 42 57-98 506-550 (725)
231 PRK04914 ATP-dependent helicas 80.5 3 6.6E-05 40.5 5.0 60 35-100 478-538 (956)
232 PRK05298 excinuclease ABC subu 80.1 1.9 4.1E-05 40.1 3.5 62 35-100 429-490 (652)
233 cd01523 RHOD_Lact_B Member of 80.0 3.3 7.1E-05 28.0 3.9 37 107-143 60-96 (100)
234 cd00079 HELICc Helicase superf 79.5 3 6.5E-05 29.3 3.7 69 25-98 2-70 (131)
235 PLN00206 DEAD-box ATP-dependen 79.3 2.2 4.7E-05 38.6 3.5 42 59-100 370-412 (518)
236 smart00115 CASc Caspase, inter 78.3 33 0.00072 27.5 11.6 109 107-223 7-134 (241)
237 KOG0339|consensus 77.7 2.6 5.6E-05 37.6 3.3 68 39-119 460-527 (731)
238 TIGR03714 secA2 accessory Sec 77.5 5 0.00011 37.9 5.3 88 29-126 401-488 (762)
239 TIGR01967 DEAH_box_HrpA ATP-de 77.0 11 0.00024 37.9 7.7 91 2-99 226-325 (1283)
240 PRK13104 secA preprotein trans 76.8 4.9 0.00011 38.5 5.1 66 29-98 421-486 (896)
241 PF11496 HDA2-3: Class II hist 76.5 13 0.00028 31.1 7.0 106 108-213 117-243 (297)
242 PF00270 DEAD: DEAD/DEAH box h 76.3 11 0.00024 27.7 6.2 71 108-182 44-125 (169)
243 PRK13766 Hef nuclease; Provisi 75.8 11 0.00023 36.0 7.2 72 108-184 58-139 (773)
244 cd00032 CASc Caspase, interleu 75.3 41 0.00089 27.0 12.1 108 108-223 9-135 (243)
245 smart00450 RHOD Rhodanese Homo 74.3 5.5 0.00012 26.2 3.8 39 106-144 54-93 (100)
246 KOG0350|consensus 73.7 10 0.00022 33.9 5.9 75 108-182 215-301 (620)
247 PF04364 DNA_pol3_chi: DNA pol 73.7 15 0.00033 26.7 6.1 68 108-186 29-96 (137)
248 PRK12904 preprotein translocas 73.5 7.2 0.00016 37.2 5.3 85 29-123 407-491 (830)
249 cd01529 4RHOD_Repeats Member o 73.4 6.3 0.00014 26.4 3.8 37 107-143 55-92 (96)
250 PRK09694 helicase Cas3; Provis 73.4 6.1 0.00013 38.1 4.9 46 55-100 559-607 (878)
251 KOG0334|consensus 72.9 4 8.6E-05 39.3 3.5 108 33-157 598-705 (997)
252 PRK09751 putative ATP-dependen 72.3 10 0.00022 38.7 6.3 71 108-182 37-130 (1490)
253 PRK12900 secA preprotein trans 72.2 9.2 0.0002 37.1 5.7 118 29-157 575-696 (1025)
254 cd01534 4RHOD_Repeat_3 Member 72.1 6.6 0.00014 26.2 3.7 36 108-143 56-91 (95)
255 PRK13767 ATP-dependent helicas 71.2 5.5 0.00012 38.5 4.1 45 56-100 284-334 (876)
256 cd01448 TST_Repeat_1 Thiosulfa 71.1 13 0.00028 26.0 5.2 36 108-143 79-116 (122)
257 COG1111 MPH1 ERCC4-like helica 70.9 29 0.00062 31.2 8.0 70 108-182 58-137 (542)
258 KOG0337|consensus 70.5 5.8 0.00013 34.6 3.7 66 59-128 264-329 (529)
259 cd01526 RHOD_ThiF Member of th 70.1 6.1 0.00013 27.9 3.3 38 107-144 71-110 (122)
260 COG1205 Distinct helicase fami 69.6 11 0.00025 36.2 5.8 58 106-167 113-176 (851)
261 PHA02558 uvsW UvsW helicase; P 69.5 7.8 0.00017 34.8 4.6 43 56-98 344-386 (501)
262 KOG0345|consensus 68.4 14 0.0003 32.8 5.5 70 110-182 81-163 (567)
263 PRK13107 preprotein translocas 67.9 10 0.00022 36.5 5.0 65 30-98 427-491 (908)
264 cd01518 RHOD_YceA Member of th 67.3 7.1 0.00015 26.4 3.1 37 107-143 60-97 (101)
265 KOG0336|consensus 66.9 5.6 0.00012 34.6 2.8 57 59-119 468-524 (629)
266 cd01521 RHOD_PspE2 Member of t 66.8 11 0.00024 26.0 4.0 38 107-144 63-102 (110)
267 cd01527 RHOD_YgaP Member of th 66.4 12 0.00026 25.1 4.0 37 107-143 53-90 (99)
268 cd01533 4RHOD_Repeat_2 Member 66.1 9.6 0.00021 26.2 3.6 38 107-144 65-104 (109)
269 cd01447 Polysulfide_ST Polysul 65.8 7.4 0.00016 26.2 2.9 37 107-143 60-97 (103)
270 cd00046 DEXDc DEAD-like helica 65.3 25 0.00053 24.3 5.8 56 108-167 30-88 (144)
271 PRK05728 DNA polymerase III su 64.5 36 0.00078 25.0 6.5 65 108-185 29-94 (142)
272 cd01520 RHOD_YbbB Member of th 64.3 11 0.00025 26.8 3.8 38 107-144 85-123 (128)
273 cd01528 RHOD_2 Member of the R 64.2 12 0.00026 25.2 3.7 38 107-144 57-95 (101)
274 cd01449 TST_Repeat_2 Thiosulfa 63.7 16 0.00034 25.4 4.3 36 107-142 77-113 (118)
275 cd01134 V_A-ATPase_A V/A-type 63.6 98 0.0021 26.7 11.3 36 109-144 219-265 (369)
276 cd01525 RHOD_Kc Member of the 62.5 17 0.00036 24.6 4.2 36 108-143 65-101 (105)
277 PRK11664 ATP-dependent RNA hel 61.8 16 0.00034 35.1 5.1 86 4-99 165-258 (812)
278 TIGR01970 DEAH_box_HrpB ATP-de 61.7 16 0.00035 35.1 5.2 86 4-99 162-255 (819)
279 cd01519 RHOD_HSP67B2 Member of 61.2 9.7 0.00021 25.8 2.8 37 107-143 65-102 (106)
280 KOG0346|consensus 60.6 11 0.00024 33.2 3.5 62 108-173 93-165 (569)
281 cd01444 GlpE_ST GlpE sulfurtra 60.5 15 0.00033 24.2 3.7 37 107-143 55-92 (96)
282 COG0610 Type I site-specific r 59.8 22 0.00048 34.9 5.8 48 154-202 589-636 (962)
283 KOG0329|consensus 59.4 17 0.00036 29.7 4.1 70 108-181 110-190 (387)
284 PRK02362 ski2-like helicase; P 58.6 13 0.00028 35.3 4.0 46 55-100 242-323 (737)
285 PRK15483 type III restriction- 58.5 11 0.00024 36.7 3.5 45 158-202 501-545 (986)
286 cd03031 GRX_GRX_like Glutaredo 58.4 73 0.0016 23.6 7.4 45 111-155 2-53 (147)
287 COG3587 Restriction endonuclea 57.9 12 0.00025 35.8 3.4 52 158-209 483-536 (985)
288 PRK12899 secA preprotein trans 57.6 29 0.00062 33.8 6.0 54 108-167 135-192 (970)
289 cd01445 TST_Repeats Thiosulfat 56.4 33 0.00071 24.9 5.0 36 108-143 95-134 (138)
290 cd01532 4RHOD_Repeat_1 Member 55.3 21 0.00046 23.6 3.7 36 108-143 50-88 (92)
291 COG0353 RecR Recombinational D 55.3 36 0.00078 26.5 5.2 63 108-171 78-149 (198)
292 KOG0352|consensus 55.2 23 0.0005 31.2 4.5 76 57-132 256-344 (641)
293 TIGR00696 wecB_tagA_cpsF bacte 53.5 99 0.0021 23.6 7.7 55 109-163 49-105 (177)
294 COG1203 CRISPR-associated heli 52.9 27 0.00059 33.1 5.1 52 53-104 437-488 (733)
295 PLN02723 3-mercaptopyruvate su 52.2 28 0.00061 29.3 4.7 37 107-143 268-305 (320)
296 cd03028 GRX_PICOT_like Glutare 52.2 66 0.0014 21.2 7.4 45 108-152 7-57 (90)
297 cd00158 RHOD Rhodanese Homolog 52.1 31 0.00067 22.0 4.1 38 106-143 48-86 (89)
298 cd01522 RHOD_1 Member of the R 52.1 27 0.00058 24.4 3.9 38 107-144 63-101 (117)
299 KOG0389|consensus 51.5 84 0.0018 30.1 7.7 61 107-170 447-511 (941)
300 COG1201 Lhr Lhr-like helicases 51.1 55 0.0012 31.5 6.7 73 37-119 242-315 (814)
301 PHA03371 circ protein; Provisi 51.0 12 0.00026 29.7 2.0 53 168-221 30-96 (240)
302 PF03808 Glyco_tran_WecB: Glyc 50.8 1.1E+02 0.0023 23.2 7.4 57 108-164 48-107 (172)
303 COG0556 UvrB Helicase subunit 50.5 1.7E+02 0.0038 26.8 9.2 46 55-100 445-490 (663)
304 TIGR00365 monothiol glutaredox 50.2 77 0.0017 21.4 7.6 46 108-153 11-62 (97)
305 PRK10287 thiosulfate:cyanide s 49.9 27 0.00059 24.0 3.6 36 108-143 60-95 (104)
306 KOG0348|consensus 49.6 25 0.00053 31.9 3.9 78 105-182 208-293 (708)
307 PF13380 CoA_binding_2: CoA bi 49.5 44 0.00095 23.4 4.6 90 69-161 16-105 (116)
308 PRK11493 sseA 3-mercaptopyruva 49.1 31 0.00068 28.3 4.4 37 107-143 230-267 (281)
309 COG2927 HolC DNA polymerase II 49.1 74 0.0016 23.5 5.8 33 108-140 29-61 (144)
310 cd06533 Glyco_transf_WecG_TagA 48.7 1.1E+02 0.0025 23.0 7.4 57 108-164 46-105 (171)
311 PF02142 MGS: MGS-like domain 48.5 17 0.00036 24.5 2.3 46 122-167 20-69 (95)
312 PRK01172 ski2-like helicase; P 48.2 22 0.00047 33.3 3.7 46 55-100 235-305 (674)
313 PRK06936 type III secretion sy 47.7 2E+02 0.0044 25.5 11.2 49 109-157 217-276 (439)
314 PRK05320 rhodanese superfamily 46.1 27 0.00058 28.5 3.5 38 107-144 174-212 (257)
315 PRK10329 glutaredoxin-like pro 46.0 81 0.0018 20.4 7.5 56 110-166 2-58 (81)
316 cd03027 GRX_DEP Glutaredoxin ( 45.4 74 0.0016 19.8 7.5 55 110-164 2-57 (73)
317 KOG0344|consensus 45.3 33 0.0007 31.3 4.1 41 59-99 390-431 (593)
318 KOG0948|consensus 45.2 31 0.00067 32.7 4.0 30 57-86 384-413 (1041)
319 PRK04192 V-type ATP synthase s 45.1 2.6E+02 0.0056 26.0 11.5 36 109-144 289-335 (586)
320 PRK00162 glpE thiosulfate sulf 45.0 39 0.00084 23.0 3.8 37 108-144 58-95 (108)
321 PLN02160 thiosulfate sulfurtra 44.8 29 0.00062 25.2 3.2 38 107-144 80-118 (136)
322 cd03418 GRX_GRXb_1_3_like Glut 44.7 75 0.0016 19.7 7.2 45 111-155 2-47 (75)
323 PRK00254 ski2-like helicase; P 44.4 43 0.00094 31.7 5.1 68 108-182 68-144 (720)
324 cd01523 RHOD_Lact_B Member of 44.4 30 0.00065 23.1 3.1 37 54-90 59-95 (100)
325 PF02670 DXP_reductoisom: 1-de 44.0 1.2E+02 0.0026 21.9 8.6 58 109-172 47-104 (129)
326 PRK13103 secA preprotein trans 43.4 68 0.0015 31.2 6.1 57 105-167 120-180 (913)
327 cd01535 4RHOD_Repeat_4 Member 42.5 40 0.00087 24.7 3.7 36 108-143 49-85 (145)
328 TIGR00096 probable S-adenosylm 42.3 66 0.0014 26.6 5.2 67 109-177 25-91 (276)
329 TIGR02981 phageshock_pspE phag 42.2 42 0.00092 22.9 3.5 35 108-142 58-92 (101)
330 PF03599 CdhD: CO dehydrogenas 41.2 1.6E+02 0.0035 25.7 7.5 58 56-141 120-178 (386)
331 PRK01415 hypothetical protein; 40.1 34 0.00073 27.8 3.2 38 107-144 170-208 (247)
332 COG0607 PspE Rhodanese-related 39.6 41 0.00089 22.6 3.2 36 108-143 61-97 (110)
333 PF00581 Rhodanese: Rhodanese- 39.1 46 0.001 22.3 3.4 38 107-144 66-109 (113)
334 PF02698 DUF218: DUF218 domain 38.8 68 0.0015 23.4 4.5 60 108-167 37-107 (155)
335 PRK06646 DNA polymerase III su 38.2 64 0.0014 24.1 4.2 33 108-140 29-61 (154)
336 KOG0351|consensus 37.9 63 0.0014 31.6 5.0 39 128-166 324-364 (941)
337 PRK11131 ATP-dependent RNA hel 37.6 57 0.0012 33.1 4.8 92 2-100 233-333 (1294)
338 cd01530 Cdc25 Cdc25 phosphatas 37.1 55 0.0012 23.0 3.6 37 107-143 67-117 (121)
339 PF07652 Flavi_DEAD: Flaviviru 36.9 36 0.00077 25.2 2.6 100 107-217 32-137 (148)
340 TIGR03865 PQQ_CXXCW PQQ-depend 36.7 56 0.0012 24.5 3.8 38 106-143 114-153 (162)
341 COG2247 LytB Putative cell wal 36.7 1.9E+02 0.0041 24.5 7.0 63 103-165 71-139 (337)
342 TIGR00615 recR recombination p 35.5 1.1E+02 0.0023 24.0 5.1 63 108-171 77-148 (195)
343 TIGR01042 V-ATPase_V1_A V-type 35.4 3.7E+02 0.008 25.0 11.1 36 109-144 290-336 (591)
344 PLN03142 Probable chromatin-re 34.5 1.6E+02 0.0034 29.4 7.2 64 33-100 468-531 (1033)
345 COG1204 Superfamily II helicas 33.6 1.6E+02 0.0035 28.2 7.0 68 108-182 76-152 (766)
346 TIGR03590 PseG pseudaminic aci 33.6 2.7E+02 0.0058 22.8 11.1 60 120-186 68-128 (279)
347 PRK06124 gluconate 5-dehydroge 33.5 2.4E+02 0.0052 22.2 8.7 30 57-86 12-41 (256)
348 smart00851 MGS MGS-like domain 33.1 64 0.0014 21.3 3.2 43 124-167 22-64 (90)
349 COG0300 DltE Short-chain dehyd 33.1 2.8E+02 0.006 22.8 8.8 81 57-165 7-91 (265)
350 PF11019 DUF2608: Protein of u 32.7 1.8E+02 0.0038 23.6 6.3 31 109-139 178-209 (252)
351 PF14617 CMS1: U3-containing 9 31.9 1.4E+02 0.0031 24.3 5.6 88 108-198 126-235 (252)
352 PF01751 Toprim: Toprim domain 31.5 42 0.00092 22.6 2.2 61 112-172 2-74 (100)
353 TIGR01043 ATP_syn_A_arch ATP s 31.4 4.3E+02 0.0093 24.5 10.6 36 109-144 284-330 (578)
354 PRK04196 V-type ATP synthase s 31.3 3.9E+02 0.0084 24.0 9.8 23 123-145 229-252 (460)
355 PF12683 DUF3798: Protein of u 31.3 69 0.0015 26.3 3.6 90 95-190 49-144 (275)
356 COG0240 GpsA Glycerol-3-phosph 31.1 3.4E+02 0.0073 23.2 8.6 104 59-168 74-180 (329)
357 PRK00142 putative rhodanese-re 31.0 62 0.0014 27.2 3.5 38 107-144 170-208 (314)
358 PRK09281 F0F1 ATP synthase sub 30.9 4.1E+02 0.0089 24.1 10.6 40 109-148 219-269 (502)
359 PF03668 ATP_bind_2: P-loop AT 30.9 29 0.00064 28.7 1.5 88 5-92 186-283 (284)
360 PRK10310 PTS system galactitol 30.7 1.7E+02 0.0037 19.6 6.0 63 110-179 4-72 (94)
361 PF13167 GTP-bdg_N: GTP-bindin 29.8 1.6E+02 0.0035 20.0 4.7 36 120-155 45-80 (95)
362 PRK01221 putative deoxyhypusin 29.7 1.2E+02 0.0025 25.7 4.8 49 119-167 42-91 (312)
363 cd01025 TOPRIM_recR TOPRIM_rec 29.6 1.3E+02 0.0029 21.1 4.4 60 111-171 2-70 (112)
364 PRK13844 recombination protein 29.5 1.5E+02 0.0034 23.2 5.1 62 108-170 81-151 (200)
365 PRK09280 F0F1 ATP synthase sub 29.5 4.2E+02 0.0091 23.8 10.1 50 109-158 202-263 (463)
366 PRK08972 fliI flagellum-specif 29.3 4.2E+02 0.009 23.7 11.9 50 109-158 217-277 (444)
367 PF00070 Pyr_redox: Pyridine n 29.1 1.5E+02 0.0033 18.7 5.6 55 113-167 3-63 (80)
368 COG0634 Hpt Hypoxanthine-guani 29.0 57 0.0012 24.9 2.6 68 109-176 35-111 (178)
369 KOG0385|consensus 28.8 2E+02 0.0044 27.7 6.4 60 105-166 214-275 (971)
370 KOG0390|consensus 27.8 3.7E+02 0.008 25.9 8.1 131 31-170 573-711 (776)
371 COG4087 Soluble P-type ATPase 27.8 2.5E+02 0.0054 20.6 5.8 55 111-165 46-101 (152)
372 TIGR01617 arsC_related transcr 27.7 2E+02 0.0043 20.0 5.2 54 113-166 4-59 (117)
373 smart00487 DEXDc DEAD-like hel 27.7 1.9E+02 0.0041 21.1 5.5 54 108-165 54-112 (201)
374 PF01113 DapB_N: Dihydrodipico 27.5 1.9E+02 0.004 20.4 5.0 55 110-166 69-123 (124)
375 PRK06827 phosphoribosylpyropho 27.5 2.8E+02 0.0062 24.1 6.9 61 107-168 263-329 (382)
376 PF02698 DUF218: DUF218 domain 26.1 2.6E+02 0.0056 20.2 6.3 89 35-130 23-119 (155)
377 PF00106 adh_short: short chai 25.9 2.6E+02 0.0055 20.1 7.9 58 108-165 24-87 (167)
378 cd01422 MGS Methylglyoxal synt 25.3 1.1E+02 0.0024 21.4 3.5 44 123-167 35-79 (115)
379 PRK09189 uroporphyrinogen-III 24.9 3.5E+02 0.0076 21.3 8.2 59 107-166 117-179 (240)
380 cd03030 GRX_SH3BGR Glutaredoxi 24.5 2.3E+02 0.0049 19.0 5.3 39 117-155 15-53 (92)
381 PRK11784 tRNA 2-selenouridine 23.9 3E+02 0.0064 23.6 6.4 48 107-155 87-135 (345)
382 TIGR01019 sucCoAalpha succinyl 23.9 4.3E+02 0.0092 22.0 7.5 104 54-158 4-114 (286)
383 PRK05597 molybdopterin biosynt 23.6 99 0.0021 26.5 3.5 37 107-143 313-350 (355)
384 PRK11493 sseA 3-mercaptopyruva 23.6 1.8E+02 0.0038 23.9 4.9 36 108-143 87-124 (281)
385 cd01423 MGS_CPS_I_III Methylgl 23.3 1.2E+02 0.0027 20.9 3.4 45 123-167 34-80 (116)
386 COG1922 WecG Teichoic acid bio 23.2 4.2E+02 0.0091 21.7 7.0 56 109-164 109-167 (253)
387 cd01294 DHOase Dihydroorotase 23.0 1E+02 0.0022 26.0 3.4 26 143-168 219-244 (335)
388 cd02066 GRX_family Glutaredoxi 22.8 1.8E+02 0.0038 17.2 7.2 53 111-163 2-55 (72)
389 KOG3424|consensus 22.8 2.2E+02 0.0048 20.2 4.4 34 125-158 15-52 (132)
390 TIGR01041 ATP_syn_B_arch ATP s 22.7 5.6E+02 0.012 23.0 9.9 38 109-146 202-251 (458)
391 KOG0025|consensus 22.3 4.8E+02 0.01 22.1 7.3 82 57-144 186-267 (354)
392 PRK09629 bifunctional thiosulf 22.1 1.7E+02 0.0037 27.3 4.9 38 106-143 221-259 (610)
393 PRK09548 PTS system ascorbate- 22.0 5.2E+02 0.011 24.1 7.7 78 109-193 507-589 (602)
394 PLN02723 3-mercaptopyruvate su 22.0 2.1E+02 0.0045 24.1 5.1 37 107-143 102-140 (320)
395 COG1736 DPH2 Diphthamide synth 21.8 1.5E+02 0.0033 25.4 4.1 53 67-119 135-189 (347)
396 PF02617 ClpS: ATP-dependent C 21.8 1.7E+02 0.0037 18.9 3.6 25 108-132 47-71 (82)
397 KOG1529|consensus 21.7 2.1E+02 0.0045 23.8 4.7 37 108-144 236-272 (286)
398 COG4581 Superfamily II RNA hel 21.6 1.1E+02 0.0023 30.4 3.5 41 54-94 258-299 (1041)
399 PRK07097 gluconate 5-dehydroge 21.5 4.1E+02 0.009 21.0 8.4 29 58-86 12-40 (265)
400 cd01446 DSP_MapKP N-terminal r 21.2 1.5E+02 0.0034 20.8 3.7 37 107-143 74-122 (132)
401 COG0052 RpsB Ribosomal protein 21.0 4.6E+02 0.01 21.4 7.2 53 143-200 165-220 (252)
402 PF04273 DUF442: Putative phos 20.6 2.9E+02 0.0062 19.2 4.7 59 69-127 46-105 (110)
403 smart00115 CASc Caspase, inter 20.5 3.3E+02 0.0072 21.8 5.8 48 55-102 7-65 (241)
404 TIGR01040 V-ATPase_V1_B V-type 20.3 6.4E+02 0.014 22.7 10.0 37 109-145 211-259 (466)
405 PF14824 Sirohm_synth_M: Siroh 20.0 63 0.0014 16.9 1.0 12 156-167 2-13 (30)
No 1
>KOG0333|consensus
Probab=99.97 E-value=1.9e-30 Score=218.85 Aligned_cols=163 Identities=42% Similarity=0.735 Sum_probs=155.1
Q ss_pred ChHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 1 LLAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
.||+.||.+|+.+.+...+.+...++|.++.+++++|...|..+|....
T Consensus 468 rlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~------------------------------- 516 (673)
T KOG0333|consen 468 RLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF------------------------------- 516 (673)
T ss_pred HHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC-------------------------------
Confidence 3899999999999998888999999999999999999999999998772
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++|||+|+.+.|+.+++.|.+.|+.+..+||+-++++|+..+..|++|..+
T Consensus 517 ---------------------------~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d 569 (673)
T KOG0333|consen 517 ---------------------------DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD 569 (673)
T ss_pred ---------------------------CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
|||||+++++|+|+|++.+||+||++++.+.|.||+||+||.|+.|.+++|+.+.+...|-
T Consensus 570 IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 570 ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFY 630 (673)
T ss_pred EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999866443
No 2
>KOG0328|consensus
Probab=99.97 E-value=8.3e-31 Score=206.27 Aligned_cols=159 Identities=33% Similarity=0.569 Sum_probs=150.8
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+.++||+||+.|-+.+.+.++++|+++|+.+++++ |.+.|.+|-+....
T Consensus 217 mt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtI------------------------------ 266 (400)
T KOG0328|consen 217 MTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI------------------------------ 266 (400)
T ss_pred HHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhheh------------------------------
Confidence 46799999999999999999999999999999887 99999999998853
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
.+++|||+|+..++-+.+-+....+.+...||+|++++|+++...|++|..+
T Consensus 267 ----------------------------tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr 318 (400)
T KOG0328|consen 267 ----------------------------TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR 318 (400)
T ss_pred ----------------------------heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce
Confidence 5799999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
||++||+-++|+|+|.+++||+||.|.+.+.|+||+||+||.|++|.++-|+...+..
T Consensus 319 vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 319 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877654
No 3
>KOG0331|consensus
Probab=99.97 E-value=8.9e-31 Score=224.93 Aligned_cols=162 Identities=43% Similarity=0.689 Sum_probs=150.5
Q ss_pred ChHHHHhhcceeEEEeecc--CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh
Q psy15610 1 LLAKEFLYRYIFLAIGRVG--STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
.||++||.+|+.+.+.... ..+.+|.|....+++..|...|.++|.....
T Consensus 287 ~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~---------------------------- 338 (519)
T KOG0331|consen 287 QLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISS---------------------------- 338 (519)
T ss_pred HHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhc----------------------------
Confidence 4899999999999997543 7889999999999999999999999987642
Q ss_pred cCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 79 HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
.++.++||||.|.+.|++++..++..++++..+||+.++.+|+.+++.|++|.
T Consensus 339 ---------------------------~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 339 ---------------------------DSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred ---------------------------cCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCC
Confidence 22679999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 159 TPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 159 ~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
..|||||+++++|+|+|++++||+||+|.+.+.|+||+||+||.|+.|.+++|+...+.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654
No 4
>KOG0326|consensus
Probab=99.97 E-value=1.6e-30 Score=207.82 Aligned_cols=159 Identities=30% Similarity=0.485 Sum_probs=152.1
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
++.+||++|+.|+++ ++.++.++.|+|..|++++|..+|..|+.+.+
T Consensus 275 Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLntLfskLq-------------------------------- 321 (459)
T KOG0326|consen 275 FMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNTLFSKLQ-------------------------------- 321 (459)
T ss_pred HHHHhccCcceeehh-hhhhhcchhhheeeechhhhhhhHHHHHHHhc--------------------------------
Confidence 688999999999998 77899999999999999999999999999987
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
-+++||||++...++.++.-+.+.|+++.++|+.|.+++|-+++..|++|..+.
T Consensus 322 --------------------------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crn 375 (459)
T KOG0326|consen 322 --------------------------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRN 375 (459)
T ss_pred --------------------------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccce
Confidence 368999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGS 219 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 219 (237)
|||||.+.+|+|+|.+++||+||.|.+++.|+||+||+||.|-.|.++.++..++.-.
T Consensus 376 LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 376 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999877643
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.3e-29 Score=221.26 Aligned_cols=157 Identities=43% Similarity=0.671 Sum_probs=148.2
Q ss_pred ChHHHHhhcceeEEEeeccC--CCCCceeEEEEeechh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhh
Q psy15610 1 LLAKEFLYRYIFLAIGRVGS--TSENITQRIAWVDEQD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLH 77 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~ 77 (237)
+|+++||.+|..+.+..+.. +...|.|+|+.++..+ |+..|..+|....
T Consensus 221 ~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~---------------------------- 272 (513)
T COG0513 221 ELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDED---------------------------- 272 (513)
T ss_pred HHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCC----------------------------
Confidence 37899999999998875555 8899999999999876 9999999999874
Q ss_pred hcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 78 HHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
..++||||+|...++.++..|...|+.+..+||++++++|.+.++.|++|
T Consensus 273 ------------------------------~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g 322 (513)
T COG0513 273 ------------------------------EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG 322 (513)
T ss_pred ------------------------------CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 35799999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 158 ETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 158 ~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
..+||||||++++|+|+|++++||+||.|.+++.|+||+||+||.|..|.++.|+.+.
T Consensus 323 ~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 323 ELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred CCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999999999999999999999999999999999999974
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=8.1e-28 Score=209.03 Aligned_cols=158 Identities=36% Similarity=0.554 Sum_probs=143.6
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
++..++.+|..+.+.+.......+.+.+..+...+|...|.+++....
T Consensus 207 ~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-------------------------------- 254 (423)
T PRK04837 207 LAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW-------------------------------- 254 (423)
T ss_pred HHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcC--------------------------------
Confidence 456788899988887666677788888877777889888888886542
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 255 --------------------------~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~v 308 (423)
T PRK04837 255 --------------------------PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDI 308 (423)
T ss_pred --------------------------CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcE
Confidence 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+.
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 99999999999999999999999999999999999999999999999999987643
No 7
>KOG0330|consensus
Probab=99.95 E-value=4e-28 Score=198.39 Aligned_cols=161 Identities=32% Similarity=0.497 Sum_probs=149.3
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
|...-+++|..+.+...-.+.+.++|.|+.++...|..+|+.+|+...
T Consensus 252 L~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~-------------------------------- 299 (476)
T KOG0330|consen 252 LQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELA-------------------------------- 299 (476)
T ss_pred HHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhc--------------------------------
Confidence 344567899999887666888999999999999999999999999764
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
+.++||||+|....+.++-+|+.+|+.+..+||.|+++.|.-.++.|++|...|
T Consensus 300 --------------------------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~i 353 (476)
T KOG0330|consen 300 --------------------------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSI 353 (476)
T ss_pred --------------------------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcE
Confidence 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~ 220 (237)
|+|||++++|+|+|.+++|||||.|.+..+|+||+||++|.|.+|.++.+++.-+.+.|
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELV 412 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHH
Confidence 99999999999999999999999999999999999999999999999999987554433
No 8
>KOG0332|consensus
Probab=99.95 E-value=2.1e-27 Score=193.25 Aligned_cols=158 Identities=32% Similarity=0.499 Sum_probs=146.7
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeech-hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQ-DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+|.+++++|..+-+.++..++.+|.|+|+.|..+ +|.+.|.+|-...-
T Consensus 281 Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~t------------------------------- 329 (477)
T KOG0332|consen 281 FALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLT------------------------------- 329 (477)
T ss_pred HHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhh-------------------------------
Confidence 6889999999999999999999999999999964 69999999665542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
-+++||||.|++.+..++..+...|..+..+||.|.-++|..+++.|++|..+
T Consensus 330 ---------------------------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k 382 (477)
T KOG0332|consen 330 ---------------------------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK 382 (477)
T ss_pred ---------------------------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce
Confidence 37899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCC------CHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPS------DVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
|||+|+++++|+|++.+++||+||.|. +.+.|+||+||+||+|+.|.++.|+..+..
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 999999999999999999999999995 789999999999999999999999876543
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=6e-27 Score=205.60 Aligned_cols=157 Identities=34% Similarity=0.519 Sum_probs=143.7
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+++.|+.+|..+.+... .....+.+.++.++..+|...|..++....
T Consensus 195 l~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-------------------------------- 241 (460)
T PRK11776 195 ISQRFQRDPVEVKVEST-HDLPAIEQRFYEVSPDERLPALQRLLLHHQ-------------------------------- 241 (460)
T ss_pred HHHHhcCCCEEEEECcC-CCCCCeeEEEEEeCcHHHHHHHHHHHHhcC--------------------------------
Confidence 57788999999887543 345669999999998889999999887542
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+++..++.+++.|...++.+..+||+|++.+|+.+++.|++|..+|
T Consensus 242 --------------------------~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~v 295 (460)
T PRK11776 242 --------------------------PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSV 295 (460)
T ss_pred --------------------------CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||||+++++|+|+|++++||+++.|.++..|+||+||+||.|..|.+++|+.+.+.
T Consensus 296 LVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 296 LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred EEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 99999999999999999999999999999999999999999999999999988754
No 10
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=2.2e-26 Score=205.00 Aligned_cols=161 Identities=43% Similarity=0.706 Sum_probs=143.6
Q ss_pred hHHHHhh-cceeEEEeecc-CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc
Q psy15610 2 LAKEFLY-RYIFLAIGRVG-STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH 79 (237)
Q Consensus 2 ~~~~~l~-~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~ 79 (237)
+++.++. +|+.+.+.... ....++.+.+..+++.+|...|.++|.....
T Consensus 325 l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~----------------------------- 375 (545)
T PTZ00110 325 LARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR----------------------------- 375 (545)
T ss_pred HHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-----------------------------
Confidence 5667776 68888776444 4567889998888888899988888876421
Q ss_pred CCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC
Q psy15610 80 GYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 159 (237)
+..++||||++++.++.++..|...++.+..+||++++++|+.+++.|++|..
T Consensus 376 ---------------------------~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 376 ---------------------------DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred ---------------------------cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 15799999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 160 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 160 ~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|..|.+++|+.+.+..
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 99999999999999999999999999999999999999999999999999999987653
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=2.1e-26 Score=201.79 Aligned_cols=158 Identities=39% Similarity=0.614 Sum_probs=142.1
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
++.+++.+|..+.+.........+.+.+..++..+|...|..++....
T Consensus 197 l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~-------------------------------- 244 (456)
T PRK10590 197 LAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGN-------------------------------- 244 (456)
T ss_pred HHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCC--------------------------------
Confidence 567888899888877666667788888888888888877777765432
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+++..++.+++.|...++.+..+||+|++.+|.++++.|++|.++|
T Consensus 245 --------------------------~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~i 298 (456)
T PRK10590 245 --------------------------WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298 (456)
T ss_pred --------------------------CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||||+++++|+|+|++++||+|++|.++..|+||+||+||.|..|.+++|+...+.
T Consensus 299 LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred EEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999976653
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.9e-26 Score=206.25 Aligned_cols=157 Identities=44% Similarity=0.620 Sum_probs=141.6
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
++..+|.+|..+.+..+......+.+.++.+...+|...|..++....
T Consensus 209 l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~-------------------------------- 256 (572)
T PRK04537 209 LAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSE-------------------------------- 256 (572)
T ss_pred HHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhccc--------------------------------
Confidence 466788888777766566667788888888887888888888886542
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+|+..++.+++.|...++.+..+||+|++.+|..+++.|++|.++|
T Consensus 257 --------------------------~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~V 310 (572)
T PRK04537 257 --------------------------GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEI 310 (572)
T ss_pred --------------------------CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
||||+++++|+|+|++++||+|+.|.+...|+||+||+||.|..|.+++|+.+.+
T Consensus 311 LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999997653
No 13
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=3e-26 Score=199.94 Aligned_cols=158 Identities=34% Similarity=0.548 Sum_probs=143.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
++..++.+|+.+.+.+......++.+++..++. ..|...|..++....
T Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~------------------------------- 244 (434)
T PRK11192 196 FAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPE------------------------------- 244 (434)
T ss_pred HHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCC-------------------------------
Confidence 567788899999887766777889998887775 568888888887542
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 245 ---------------------------~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~ 297 (434)
T PRK11192 245 ---------------------------VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN 297 (434)
T ss_pred ---------------------------CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc
Confidence 47899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|..|.+++|+...+.
T Consensus 298 vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 298 VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 999999999999999999999999999999999999999999999999999976554
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=2.6e-26 Score=206.73 Aligned_cols=158 Identities=33% Similarity=0.517 Sum_probs=146.3
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
++++|+.+|..+.+.........+.+.|+.+...+|...|..+|....
T Consensus 197 i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~-------------------------------- 244 (629)
T PRK11634 197 ITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED-------------------------------- 244 (629)
T ss_pred HHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcC--------------------------------
Confidence 578899999999887666777889999999988899999998887542
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+|+..++.+++.|...++.+..+||+|++.+|+++++.|++|.++|
T Consensus 245 --------------------------~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~I 298 (629)
T PRK11634 245 --------------------------FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 (629)
T ss_pred --------------------------CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCE
Confidence 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||||+++++|+|+|++++||+||.|.++..|+||+||+||.|..|.+++|+.+.+.
T Consensus 299 LVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999999999999999999999999999999999987654
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=2.9e-26 Score=203.45 Aligned_cols=164 Identities=33% Similarity=0.612 Sum_probs=145.4
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+++.++.+++.+.+.........+.+.++.++..+|...|.+++......
T Consensus 317 l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~------------------------------ 366 (518)
T PLN00206 317 FASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHF------------------------------ 366 (518)
T ss_pred HHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhccc------------------------------
Confidence 57788889999988766677788889888888888888888888654211
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhh-CCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|..+
T Consensus 367 --------------------------~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ 420 (518)
T PLN00206 367 --------------------------KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP 420 (518)
T ss_pred --------------------------CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 25799999999999999999975 588999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|..|.+++|+...+...+.
T Consensus 421 ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~ 481 (518)
T PLN00206 421 VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFP 481 (518)
T ss_pred EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987754443
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=7.4e-26 Score=199.37 Aligned_cols=157 Identities=34% Similarity=0.537 Sum_probs=141.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+++.++.+|..+.+..+.....++.+.+..+...+|...|.+++....
T Consensus 287 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~-------------------------------- 334 (475)
T PRK01297 287 LAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNP-------------------------------- 334 (475)
T ss_pred HHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcC--------------------------------
Confidence 567788888888777666666778888777777888888887776432
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..++||||+++..++.+++.|...++.+..+||++++++|..+++.|++|.+++
T Consensus 335 --------------------------~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~v 388 (475)
T PRK01297 335 --------------------------WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRV 388 (475)
T ss_pred --------------------------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
||||+++++|+|+|++++||++++|.+...|+||+||+||.|..|.+++|+...+
T Consensus 389 LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 389 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999998664
No 17
>KOG0335|consensus
Probab=99.94 E-value=2.9e-26 Score=194.33 Aligned_cols=186 Identities=56% Similarity=0.870 Sum_probs=162.2
Q ss_pred hHHHHhhc-ceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYR-YIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~-~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
++..|+.+ .+++.+..-+.+..+|.|.+..|.+.+|...|+++|....... +.
T Consensus 279 l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~------------~~-------------- 332 (482)
T KOG0335|consen 279 LAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPP------------SD-------------- 332 (482)
T ss_pred hHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCc------------cc--------------
Confidence 67788886 9999999999999999999999999999999999998663110 00
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
.......++|||.|.+.+..++.+|...++++..+||..++.+|++.++.|++|...
T Consensus 333 -----------------------~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 333 -----------------------GEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred -----------------------CCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 000124899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCC----CCCCCCCCCCCccC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGG----SSSQNSNAPDWWND 236 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 236 (237)
+||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+..|++......-.. +..+....|+|+.+
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999555543333 55567778888764
No 18
>KOG0345|consensus
Probab=99.93 E-value=7.1e-26 Score=189.11 Aligned_cols=160 Identities=29% Similarity=0.429 Sum_probs=146.7
Q ss_pred ChHHHHhhcceeEEEeeccC--CCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh
Q psy15610 1 LLAKEFLYRYIFLAIGRVGS--TSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
+|++..|.||+.|.+..++. +...+.-.|+.|+..+|+..|+.+|....
T Consensus 204 dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~----------------------------- 254 (567)
T KOG0345|consen 204 DLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNK----------------------------- 254 (567)
T ss_pred HHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccc-----------------------------
Confidence 37888999999999976664 67779999999999999999999998864
Q ss_pred cCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhc
Q psy15610 79 HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRS 156 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~ 156 (237)
..++|||.+|...++.....+... ...+..+||.|.+..|.++++.|++
T Consensus 255 -----------------------------~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 255 -----------------------------DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred -----------------------------cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 578999999999999998888765 6789999999999999999999999
Q ss_pred CCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 157 GETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 157 g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
..-.+|+|||++++|+|+|++++||+||+|.+++.|+||+||++|.|+.|.+++|+.+.+..
T Consensus 306 ~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 306 LSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred ccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 88899999999999999999999999999999999999999999999999999999995543
No 19
>KOG0342|consensus
Probab=99.93 E-value=8.3e-26 Score=189.61 Aligned_cols=167 Identities=32% Similarity=0.440 Sum_probs=151.3
Q ss_pred hHHHHhh-cceeEEEeecc--CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh
Q psy15610 2 LAKEFLY-RYIFLAIGRVG--STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 2 ~~~~~l~-~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
|+.--|+ +|++|++..++ .+...+.|-|++++...++..+..+|.+...
T Consensus 278 l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~---------------------------- 329 (543)
T KOG0342|consen 278 LARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIK---------------------------- 329 (543)
T ss_pred HHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcC----------------------------
Confidence 3444444 69999997665 6778999999999999999999999988741
Q ss_pred cCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 79 HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
..++||||+|......++++|....+++.-+||++++..|..+...|++.+
T Consensus 330 -----------------------------~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae 380 (543)
T KOG0342|consen 330 -----------------------------RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE 380 (543)
T ss_pred -----------------------------CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc
Confidence 268999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC
Q psy15610 159 TPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 159 ~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
..||+|||++++|+|+|++++||+|++|.++.+|+||+||+||.|..|.+++|..|.+.......++
T Consensus 381 sgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 381 SGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred cceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999998877666554
No 20
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=8.5e-25 Score=188.98 Aligned_cols=166 Identities=31% Similarity=0.524 Sum_probs=139.0
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeech-hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQ-DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+..+|+.+|..+.+........++.+.+..++.. .+...+.+++....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 266 (401)
T PTZ00424 218 LTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLT------------------------------- 266 (401)
T ss_pred HHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcC-------------------------------
Confidence 3456777777766554455666777777666542 35555665554331
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|.++
T Consensus 267 ---------------------------~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~ 319 (401)
T PTZ00424 267 ---------------------------ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR 319 (401)
T ss_pred ---------------------------CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|..|.|+.|+.+.+...+....+
T Consensus 320 vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 320 VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887665555433
No 21
>KOG0343|consensus
Probab=99.92 E-value=8.2e-25 Score=185.95 Aligned_cols=159 Identities=31% Similarity=0.461 Sum_probs=148.0
Q ss_pred ChHHHHhhcceeEEEeec--cCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh
Q psy15610 1 LLAKEFLYRYIFLAIGRV--GSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
+||+--|+||..|.+-.. .++..++.|+|++++..+|+.+|...|..+.
T Consensus 262 dLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl----------------------------- 312 (758)
T KOG0343|consen 262 DLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL----------------------------- 312 (758)
T ss_pred HHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhcc-----------------------------
Confidence 467778899999998633 3778899999999999999999999998874
Q ss_pred cCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhc
Q psy15610 79 HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRS 156 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~ 156 (237)
..++|||..|.+++..+.+.+.+. |+++..+||.|++..|..+...|-.
T Consensus 313 -----------------------------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 313 -----------------------------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred -----------------------------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH
Confidence 578999999999999999999875 8999999999999999999999999
Q ss_pred CCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 157 GETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 157 g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
....||+|||++++|+|||.+++||++|+|.+...|+||+||+.|.+..|.+++++.|.+.
T Consensus 364 ~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 364 KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 22
>KOG0327|consensus
Probab=99.92 E-value=3.8e-25 Score=180.86 Aligned_cols=162 Identities=33% Similarity=0.581 Sum_probs=152.9
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
++++||.+|+.+.+...+.++.+|+|+|+.+.+.+|+.+|.++.+.
T Consensus 217 vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~---------------------------------- 262 (397)
T KOG0327|consen 217 VTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRR---------------------------------- 262 (397)
T ss_pred HHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHh----------------------------------
Confidence 6789999999999998889999999999999999999999999982
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..+++|||||+..++.+.+.|...++.+..+||.|.+.+|..+.+.|+.|..+|
T Consensus 263 --------------------------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrv 316 (397)
T KOG0327|consen 263 --------------------------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRV 316 (397)
T ss_pred --------------------------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceE
Confidence 368999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
||+|+.+++|+|+..+..|++|+.|.+.+.|+||.||+||.|.+|.++.|+...+....+..
T Consensus 317 lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 317 LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDI 378 (397)
T ss_pred EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999998776655543
No 23
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.2e-24 Score=188.60 Aligned_cols=166 Identities=19% Similarity=0.301 Sum_probs=129.4
Q ss_pred cccceeEEeecccc--hhhHHHHhhhcCCCcee----------ecCCcchhhHHHHhhhhhhccCCceEEEEeecccchH
Q psy15610 55 DEALTLVFVETKKG--ADQLEDFLHHHGYPVTS----------IHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGAD 122 (237)
Q Consensus 55 ~~~~~i~f~~t~~~--~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~ 122 (237)
++.+++++++|... .+++.+.+.-....... ...............+.....++.++||||+|++.++
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 45679999999876 34566655332211110 0000000111111112222344566799999999999
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
.++..|...++.+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||++++|.|.+.|+||+||+||.
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeecCCCCCCC
Q psy15610 203 GNLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 203 g~~~~~~~~~~~~~~~~~ 220 (237)
|.+|.|++|+.+.+....
T Consensus 321 G~~~~~~~~~~~~d~~~~ 338 (470)
T TIGR00614 321 GLPSECHLFYAPADINRL 338 (470)
T ss_pred CCCceEEEEechhHHHHH
Confidence 999999999998765433
No 24
>KOG0336|consensus
Probab=99.92 E-value=1.1e-24 Score=179.68 Aligned_cols=167 Identities=34% Similarity=0.543 Sum_probs=149.7
Q ss_pred ChHHHHhhcceeEEEeecc-CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc
Q psy15610 1 LLAKEFLYRYIFLAIGRVG-STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH 79 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~ 79 (237)
+||..||++|+.+-+..-. .....++|.+++-.+.+|+..+..++...+.
T Consensus 414 rLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~----------------------------- 464 (629)
T KOG0336|consen 414 RLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSS----------------------------- 464 (629)
T ss_pred HHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCC-----------------------------
Confidence 4899999999999876555 5566888888777788899888888776642
Q ss_pred CCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC
Q psy15610 80 GYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 159 (237)
..++||||.....++.+...|.-.|+..-.+||+-++.+|+..++.|++|..
T Consensus 465 ----------------------------ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v 516 (629)
T KOG0336|consen 465 ----------------------------NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV 516 (629)
T ss_pred ----------------------------CceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce
Confidence 4799999999999999998888889999999999999999999999999999
Q ss_pred CEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCC
Q psy15610 160 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSS 224 (237)
Q Consensus 160 ~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 224 (237)
+|||+||++++|+|+|++++|++||.|.+.+.|+||+||.||.|+.|..+.|+...+....+.++
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876665543
No 25
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=4.1e-24 Score=197.37 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=128.4
Q ss_pred cccceeEEeecccc--hhhHHHHhhhcCCCceeecCCcch-----------hhHHHHhhhhhhccCCceEEEEeecccch
Q psy15610 55 DEALTLVFVETKKG--ADQLEDFLHHHGYPVTSIHGDRTQ-----------KEREEAQQYTLISCDEALTLVFVETKKGA 121 (237)
Q Consensus 55 ~~~~~i~f~~t~~~--~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~iIF~~t~~~~ 121 (237)
+..++++|++|... .+++...|.-.+.. ....+..+. .....+..+........+.||||.|++.+
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~-vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~ 693 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCV-VFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDC 693 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcE-EeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHH
Confidence 35678999999665 34566666433211 111111111 11111111222222356799999999999
Q ss_pred HHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhccccc
Q psy15610 122 DQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGR 201 (237)
Q Consensus 122 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R 201 (237)
+.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||+++++|||+|++++||+|++|.+.+.|+|++|||||
T Consensus 694 E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGR 773 (1195)
T PLN03137 694 EKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 773 (1195)
T ss_pred HHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeecCCCCCC
Q psy15610 202 MGNLDFPFSYNQPGYGGS 219 (237)
Q Consensus 202 ~g~~~~~~~~~~~~~~~~ 219 (237)
.|.++.|++|++..+...
T Consensus 774 DG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 774 DGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred CCCCceEEEEecHHHHHH
Confidence 999999999998765533
No 26
>KOG0340|consensus
Probab=99.91 E-value=5.2e-24 Score=172.61 Aligned_cols=153 Identities=36% Similarity=0.478 Sum_probs=139.3
Q ss_pred ceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCC
Q psy15610 10 YIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGD 89 (237)
Q Consensus 10 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~ 89 (237)
+.+++..+...+.+.+.+.|+.++...|-.+|..+|......
T Consensus 211 a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~-------------------------------------- 252 (442)
T KOG0340|consen 211 AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK-------------------------------------- 252 (442)
T ss_pred ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc--------------------------------------
Confidence 344555445577889999999999999999999999887521
Q ss_pred cchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccc
Q psy15610 90 RTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAA 169 (237)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 169 (237)
....++||+++...|+.++..|...++++..+|+-|++.+|...+.+|+++..+||||||+++
T Consensus 253 -----------------~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs 315 (442)
T KOG0340|consen 253 -----------------ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS 315 (442)
T ss_pred -----------------cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh
Confidence 147899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 170 RGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 170 ~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+|+|+|.++.|+++|.|.+|..|+||+||..|.|+.|.++.|+.+.+-
T Consensus 316 RGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 316 RGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred cCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 999999999999999999999999999999999999999999986553
No 27
>KOG0341|consensus
Probab=99.91 E-value=2e-24 Score=177.06 Aligned_cols=158 Identities=36% Similarity=0.677 Sum_probs=146.4
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+|+.-|-.|+.|++.+.++..-++.|.+-+|....|+-+|++-|.+.
T Consensus 374 FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--------------------------------- 420 (610)
T KOG0341|consen 374 FAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--------------------------------- 420 (610)
T ss_pred HHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC---------------------------------
Confidence 56777889999999999988888888877778888988888888776
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..+++|||.....++.+.+||.-+|..+..+||+.++++|...++.|+.|+-+|
T Consensus 421 --------------------------~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDV 474 (610)
T KOG0341|consen 421 --------------------------SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDV 474 (610)
T ss_pred --------------------------CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCce
Confidence 489999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
||+||+++.|+|||++.+||+||+|...+.|+||+||.||.|..|.+-+|++.....
T Consensus 475 LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 475 LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEE 531 (610)
T ss_pred EEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchH
Confidence 999999999999999999999999999999999999999999999999999876543
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=2.1e-23 Score=191.21 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=138.7
Q ss_pred EEEeechhHHH-----HHHHhhcCch--hhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcc----------
Q psy15610 29 IAWVDEQDKRS-----CLLDLLSSPS--QEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT---------- 91 (237)
Q Consensus 29 ~~~~~~~~k~~-----~l~~ll~~~~--~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~---------- 91 (237)
+++++|.+++. .+..+++... ....+.+.+.++||+|..+..++++.+....+. .+..+..
T Consensus 160 ~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~--~i~~~~~~~~~~~~~~~ 237 (742)
T TIGR03817 160 YVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVV--AVTEDGSPRGARTVALW 237 (742)
T ss_pred EEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeE--EECCCCCCcCceEEEEe
Confidence 67788877542 2222332221 112345678999999999988888777554322 1111100
Q ss_pred -h---------------h-hHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhC--------CCceEEEeCCCCHHH
Q psy15610 92 -Q---------------K-EREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHH--------GYPVTSIHGDRTQKE 146 (237)
Q Consensus 92 -~---------------~-~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~ 146 (237)
. . ..............+.++||||+|++.++.++..+... +..+..+||++++++
T Consensus 238 ~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 238 EPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred cCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 0 0 00111111111124679999999999999999987653 567889999999999
Q ss_pred HHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 147 REEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 147 r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
|.++++.|++|++++||||+++++|+|+|++++||+++.|.+...|+||+||+||.|..|.++++......+
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLD 389 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988754443
No 29
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=1.4e-23 Score=189.33 Aligned_cols=115 Identities=21% Similarity=0.409 Sum_probs=109.2
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
..+.++||||+|++.++.++..|...++.+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||++++
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCCCceEEeecCCCCCCC
Q psy15610 186 PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~ 220 (237)
|.|.+.|+||+||+||.|.+|.|++|+++.+...+
T Consensus 314 P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~ 348 (607)
T PRK11057 314 PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL 348 (607)
T ss_pred CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHH
Confidence 99999999999999999999999999998775443
No 30
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-22 Score=178.20 Aligned_cols=162 Identities=22% Similarity=0.326 Sum_probs=133.8
Q ss_pred ccceeEEeecccc--hhhHHHHhhhcCCCceeecCCcchhhHHHHhh-------hhhh----ccCCceEEEEeecccchH
Q psy15610 56 EALTLVFVETKKG--ADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ-------YTLI----SCDEALTLVFVETKKGAD 122 (237)
Q Consensus 56 ~~~~i~f~~t~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~iIF~~t~~~~~ 122 (237)
+-+++.+++|-.. ..++.+.|.-... ...+.+..+++.+-.+.. ..++ .....+.||||.|++.++
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l~~~-~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E 244 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGLQDA-NIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVE 244 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHHHhcCCCc-ceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHH
Confidence 5579999777544 6677777765543 233334444443322222 1122 344566899999999999
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
.++++|+..|+.+..||++|+.++|+.+.++|.+++++|+|||.++++|+|-|++.+||||+.|.|.+.|+|-+|||||.
T Consensus 245 ~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRD 324 (590)
T COG0514 245 ELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRD 324 (590)
T ss_pred HHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeecCCCCC
Q psy15610 203 GNLDFPFSYNQPGYGG 218 (237)
Q Consensus 203 g~~~~~~~~~~~~~~~ 218 (237)
|.+..|++|+++.+..
T Consensus 325 G~~a~aill~~~~D~~ 340 (590)
T COG0514 325 GLPAEAILLYSPEDIR 340 (590)
T ss_pred CCcceEEEeeccccHH
Confidence 9999999999998853
No 31
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=5.2e-23 Score=185.71 Aligned_cols=113 Identities=25% Similarity=0.438 Sum_probs=107.7
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS 187 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~ 187 (237)
+.++||||+|++.++.+++.|...++++..+||+|+.++|..+++.|.+|.++|||||+++++|+|+|++++||++++|.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~ 303 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG 303 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhcccccCCCCCceEEeecCCCCCCC
Q psy15610 188 DVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 188 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~ 220 (237)
|.+.|+|++||+||.|.++.|++|+++.+...+
T Consensus 304 s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~ 336 (591)
T TIGR01389 304 NLESYYQEAGRAGRDGLPAEAILLYSPADIALL 336 (591)
T ss_pred CHHHHhhhhccccCCCCCceEEEecCHHHHHHH
Confidence 999999999999999999999999988765443
No 32
>KOG0346|consensus
Probab=99.88 E-value=1.6e-22 Score=167.97 Aligned_cols=164 Identities=29% Similarity=0.420 Sum_probs=148.9
Q ss_pred hHHHHhhcceeEEEeecc-CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVG-STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
|-+.||.+|+.+.+..++ ....++.|+++.|++.+|+..+..+|.-.-+
T Consensus 218 LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI------------------------------ 267 (569)
T KOG0346|consen 218 LKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLI------------------------------ 267 (569)
T ss_pred HHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHh------------------------------
Confidence 557899999999998666 5567999999999999999999988876532
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
.+++|||+||.+.|..+.=+|..-|++..+++|++|..-|..++.+|+.|.++
T Consensus 268 ---------------------------~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd 320 (569)
T KOG0346|consen 268 ---------------------------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD 320 (569)
T ss_pred ---------------------------cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee
Confidence 37999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------------------------ccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCC
Q psy15610 161 ILVATA-----------------------------------VAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL 205 (237)
Q Consensus 161 vlv~T~-----------------------------------~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~ 205 (237)
++|+|| -+.+|+||.++.+|++||+|.+...|+||+||++|.+++
T Consensus 321 ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~ 400 (569)
T KOG0346|consen 321 IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNK 400 (569)
T ss_pred EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCC
Confidence 999998 146899999999999999999999999999999999999
Q ss_pred CceEEeecCCCCCCCCC
Q psy15610 206 DFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (237)
|.++.|+.|.+.-+..+
T Consensus 401 GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 401 GTALSFVSPKEEFGKES 417 (569)
T ss_pred CceEEEecchHHhhhhH
Confidence 99999999987765543
No 33
>KOG0344|consensus
Probab=99.88 E-value=2.3e-22 Score=172.34 Aligned_cols=166 Identities=31% Similarity=0.462 Sum_probs=146.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
.++..+.+++.|-+..-++....|.|..+.|.. ..|+-.+.+++..--
T Consensus 338 ~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~------------------------------- 386 (593)
T KOG0344|consen 338 WAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF------------------------------- 386 (593)
T ss_pred HHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-------------------------------
Confidence 456677788888776666667888888777765 458888888887652
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHH-hhCCCceEEEeCCCCHHHHHHHHHHhhcCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFL-HHHGYPVTSIHGDRTQKEREEALRRFRSGET 159 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 159 (237)
..+++||+.+.+.|..+...| ...++++.++||+.++.+|+.++++|+.|.+
T Consensus 387 ---------------------------~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 387 ---------------------------KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred ---------------------------CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 478999999999999999999 6778999999999999999999999999999
Q ss_pred CEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC
Q psy15610 160 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 160 ~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
++|+||+++++|+|+.+++.||+||.|.+...|+||+||+||.|+.|.+|+|+...+.+..+..++
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999977776665443
No 34
>KOG4284|consensus
Probab=99.88 E-value=9e-23 Score=176.36 Aligned_cols=164 Identities=28% Similarity=0.368 Sum_probs=145.9
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec--------hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHH
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE--------QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLE 73 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~--------~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~ 73 (237)
+..+||.+|..|........+-+|+|+|+.+.. +.|++.|..+++...
T Consensus 216 ~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ip------------------------ 271 (980)
T KOG4284|consen 216 LLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP------------------------ 271 (980)
T ss_pred HHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCc------------------------
Confidence 456899999999887667889999999876543 237777777776652
Q ss_pred HHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHH
Q psy15610 74 DFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRR 153 (237)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 153 (237)
..++||||+....|+-++.+|...|+++.++.|.|++.+|....+.
T Consensus 272 ----------------------------------y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 272 ----------------------------------YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred ----------------------------------hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999
Q ss_pred hhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC-CCCCCC
Q psy15610 154 FRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG-GSYGGS 223 (237)
Q Consensus 154 f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~-~~~~~~ 223 (237)
+++-..+|||+||..++|+|-+++++||+.|+|.+.+.|+||+|||||+|..|.+++|+..++. ..|.++
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987766 665554
No 35
>KOG0347|consensus
Probab=99.88 E-value=8e-24 Score=179.88 Aligned_cols=156 Identities=29% Similarity=0.430 Sum_probs=147.2
Q ss_pred hcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeec
Q psy15610 8 YRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIH 87 (237)
Q Consensus 8 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~ 87 (237)
-.|.+|++.+.+.+...+.+..+.|+..+|--+|..+|..+
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------------------------------------- 462 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--------------------------------------- 462 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec---------------------------------------
Confidence 36799999989999999999999999889998888888877
Q ss_pred CCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 88 GDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
++++|||||+.+.+..++-+|...+++...+|+.|.+.+|.+.++.|++....||||||+
T Consensus 463 --------------------PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDV 522 (731)
T KOG0347|consen 463 --------------------PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDV 522 (731)
T ss_pred --------------------CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehh
Confidence 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCC
Q psy15610 168 AARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 168 ~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 222 (237)
+++|+|+|.+.+||+|..|.+.+.|+||.||+.|.+..|..+.++.|.+-..|..
T Consensus 523 AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~K 577 (731)
T KOG0347|consen 523 AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKK 577 (731)
T ss_pred hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999998766654
No 36
>KOG0348|consensus
Probab=99.88 E-value=2.7e-22 Score=170.16 Aligned_cols=167 Identities=25% Similarity=0.397 Sum_probs=133.9
Q ss_pred ChHHHHhhcceeEEEeec-------------------------cCCCCCceeEEEEeechhHHHHHHHhhcCchhhhccc
Q psy15610 1 LLAKEFLYRYIFLAIGRV-------------------------GSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGD 55 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~-------------------------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~ 55 (237)
+||+--|+||+.|.+... -...+++.|.|.+|+.+-++-+|..+|......
T Consensus 347 rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~---- 422 (708)
T KOG0348|consen 347 RLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKF---- 422 (708)
T ss_pred HHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhh----
Confidence 467777888888872211 122345677888888888888888888765322
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhC----
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHH---- 131 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~---- 131 (237)
....++|||..+.+.++..++.|...
T Consensus 423 --------------------------------------------------~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 423 --------------------------------------------------EEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred --------------------------------------------------hhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 11346777777777777666655321
Q ss_pred ------------------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHH
Q psy15610 132 ------------------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYV 193 (237)
Q Consensus 132 ------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~ 193 (237)
+.++..+||+|++++|..++..|....-.||+|||++++|+|+|++++||+||+|.++.+|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 34688999999999999999999999888999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 194 HRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 194 Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
||+||..|.|..|..++|..|.+.++.+
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHH
Confidence 9999999999999999999999987433
No 37
>KOG0338|consensus
Probab=99.87 E-value=5.1e-22 Score=167.69 Aligned_cols=163 Identities=33% Similarity=0.478 Sum_probs=144.9
Q ss_pred ChHHHHhhcceeEEEeeccCCCCCceeEEEEee-ch--hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhh
Q psy15610 1 LLAKEFLYRYIFLAIGRVGSTSENITQRIAWVD-EQ--DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLH 77 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~-~~--~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~ 77 (237)
+|++--|+.|+.|-+.+.......+.|-|+-+- .+ ++-..|..|+....
T Consensus 374 dL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf---------------------------- 425 (691)
T KOG0338|consen 374 DLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTF---------------------------- 425 (691)
T ss_pred HHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhc----------------------------
Confidence 367788999999988877788888888876444 33 47788888887653
Q ss_pred hcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 78 HHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
...++||+.|.++|..|.-+|--.|+.+.-+||++++++|...++.|+++
T Consensus 426 ------------------------------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~ 475 (691)
T KOG0338|consen 426 ------------------------------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE 475 (691)
T ss_pred ------------------------------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc
Confidence 36799999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 158 ETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 158 ~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
++++|||||++++|+|++.+.+||+|++|.+...|+||+||..|.|+.|..++|+...+....+
T Consensus 476 eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK 539 (691)
T KOG0338|consen 476 EIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLK 539 (691)
T ss_pred cCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987664443
No 38
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.86 E-value=9.4e-21 Score=138.27 Aligned_cols=104 Identities=45% Similarity=0.753 Sum_probs=99.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS 187 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~ 187 (237)
+.++||||++...++.+.+.|...+.++..+||++++.+|..+.+.|+++...++++|..+++|+|+|.+++||.+++|+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 57899999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhcccccCCCCCceEEe
Q psy15610 188 DVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 188 s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
+...+.|++||++|.|+.|.+++|
T Consensus 108 ~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 108 SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CHHHheecccccccCCCCceEEeC
Confidence 999999999999999998887654
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.85 E-value=1.6e-20 Score=175.43 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=121.4
Q ss_pred cccceeEEeecccchhhHHHHhhhcC-----CCceeecCCcch-------------------hhHHHHhh-hhhhccCCc
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHG-----YPVTSIHGDRTQ-------------------KEREEAQQ-YTLISCDEA 109 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~-----~~~~~~~~~~~~-------------------~~~~~~~~-~~~~~~~~~ 109 (237)
...+.|.+|+|..+.+++++++.... -++..+.....+ ........ ..-...+..
T Consensus 206 ~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~ 285 (876)
T PRK13767 206 GEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHR 285 (876)
T ss_pred CCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCC
Confidence 45678999999999999999997641 122222111000 00000011 111123467
Q ss_pred eEEEEeecccchHHHHHHHhhC------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 110 LTLVFVETKKGADQLEDFLHHH------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 110 ~~iIF~~t~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
++||||+|+..++.++..|... +..+..+||++++++|..+++.|++|.+++||||+++++|+|+|++++||++
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~ 365 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL 365 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe
Confidence 8999999999999999999763 4679999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccC-CCCCceEEeec
Q psy15610 184 DLPSDVEEYVHRIGRTGRM-GNLDFPFSYNQ 213 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~~ 213 (237)
+.|.+...|+||+||+||. |..+.++++..
T Consensus 366 ~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 366 GSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999986 44455555543
No 40
>KOG0334|consensus
Probab=99.85 E-value=7.9e-21 Score=172.10 Aligned_cols=158 Identities=34% Similarity=0.590 Sum_probs=149.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEee-chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVD-EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
||.+.|+-|+.+-+...+.....+.+.+.++. +.+|...|+.||.....
T Consensus 563 la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e------------------------------ 612 (997)
T KOG0334|consen 563 LARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE------------------------------ 612 (997)
T ss_pred HHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh------------------------------
Confidence 68899999999999877888999999999999 89999999999988753
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
..++||||.....|+.+.+-|++.|+++..+||+.++.+|..++..|+++...
T Consensus 613 ---------------------------~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 613 ---------------------------DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred ---------------------------cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce
Confidence 37999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
+|++|+++++|+|+++..+||+|+.|...+.|+||+||+||.|..|.+++|+.+.+
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999843
No 41
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=1.2e-20 Score=174.99 Aligned_cols=110 Identities=24% Similarity=0.294 Sum_probs=101.9
Q ss_pred CCceEEEEeecccchHHHHHHH-hhCCCceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFL-HHHGYPVTSIHGDRTQKEREEALRRFRSG--ETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
...++||||+++..+..+++.| ...|+++..+||+|++.+|.+.++.|+++ ..+|||||+++++|+|++.+++||+|
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 3679999999999999999999 45699999999999999999999999974 58999999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|.||++..|.||+||++|.|+++.+.+++....
T Consensus 572 DlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 572 DLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred cCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 999999999999999999999998877775444
No 42
>KOG0339|consensus
Probab=99.84 E-value=1.1e-20 Score=159.63 Aligned_cols=177 Identities=37% Similarity=0.579 Sum_probs=154.9
Q ss_pred ChHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc
Q psy15610 1 LLAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH 79 (237)
Q Consensus 1 ~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~ 79 (237)
+||..+|.+|+.+-....+.....|.|.+.+++. ..|+.+|+.-|....
T Consensus 417 ~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~------------------------------ 466 (731)
T KOG0339|consen 417 KLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS------------------------------ 466 (731)
T ss_pred HHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhc------------------------------
Confidence 3789999999999776666778899999887775 569999887776653
Q ss_pred CCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC
Q psy15610 80 GYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET 159 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 159 (237)
+.+++|||+.....++.++..|.-.++++..+||+|.+.+|-.++..|+.+..
T Consensus 467 ---------------------------S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~ 519 (731)
T KOG0339|consen 467 ---------------------------SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK 519 (731)
T ss_pred ---------------------------cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC
Confidence 24799999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC----CCCCCCCCc
Q psy15610 160 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS----QNSNAPDWW 234 (237)
Q Consensus 160 ~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 234 (237)
.||++||+..+|+|+|.+..||+||.-.+.+.+.||+||.||.|..|..++++...+...-+.+.+ ..-++||-|
T Consensus 520 ~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l 598 (731)
T KOG0339|consen 520 PVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDEL 598 (731)
T ss_pred ceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHH
Confidence 999999999999999999999999999999999999999999999999999999998875554333 233455544
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=99.84 E-value=3e-20 Score=171.50 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=122.4
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCce-------e-e--------cC---CcchhhHHHHhhhhh-hccCCceEEEE
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVT-------S-I--------HG---DRTQKEREEAQQYTL-ISCDEALTLVF 114 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~-------~-~--------~~---~~~~~~~~~~~~~~~-~~~~~~~~iIF 114 (237)
++.+++.+|+|..+.+++++|+...-+... . + .. .+............. ...++.++|||
T Consensus 170 ~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF 249 (737)
T PRK02362 170 PDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVF 249 (737)
T ss_pred CCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEE
Confidence 457899999999999999999975432110 0 0 00 000000011111111 12356899999
Q ss_pred eecccchHHHHHHHhhC------------------------------------CCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 115 VETKKGADQLEDFLHHH------------------------------------GYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 115 ~~t~~~~~~l~~~L~~~------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
|+|+..++.++..|... ...+.++|++|++++|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 99999999888777532 136889999999999999999999999
Q ss_pred CCEEEEcCccccccCCCCCcEEEE----ec-----CCCCHHHHHHhhcccccCCCC--CceEEeecCC
Q psy15610 159 TPILVATAVAARGLDIPHVKHVIN----FD-----LPSDVEEYVHRIGRTGRMGNL--DFPFSYNQPG 215 (237)
Q Consensus 159 ~~vlv~T~~~~~Gvdl~~~~~Vi~----~~-----~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 215 (237)
++|||||+.+++|+|+|..++||. |+ .|.+...|.||+|||||.|.. |.+++++...
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999999999999996 65 578999999999999998865 8889988764
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.84 E-value=7.1e-20 Score=175.14 Aligned_cols=158 Identities=24% Similarity=0.302 Sum_probs=118.4
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeec---------------CCcchh-------------hHH-----HHh-
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIH---------------GDRTQK-------------ERE-----EAQ- 99 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~-------------~~~-----~~~- 99 (237)
+.+.+.|.+|+|..+.++++++|..... +..+. .++.+. .+. ...
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~p-v~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRP-VTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCC-EEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 3567899999999999999999965311 11110 000000 000 000
Q ss_pred hhhhhccCCceEEEEeecccchHHHHHHHhhCC---------------------------------CceEEEeCCCCHHH
Q psy15610 100 QYTLISCDEALTLVFVETKKGADQLEDFLHHHG---------------------------------YPVTSIHGDRTQKE 146 (237)
Q Consensus 100 ~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~~ 146 (237)
..........++||||||+..|+.++..|++.. ..+..|||+++.++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 011112346789999999999999998887531 12568999999999
Q ss_pred HHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC-CCCCceEEee
Q psy15610 147 REEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM-GNLDFPFSYN 212 (237)
Q Consensus 147 r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~ 212 (237)
|..+++.|++|.+++||||+.+++|||++++++||+++.|.+...|+||+||+||. |..+.++++.
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999995 4445555443
No 45
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=4.1e-20 Score=164.76 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=127.1
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
|.+.|..+++.|... ......+.+.++.+.+.+|...|.+++......
T Consensus 425 l~~~y~l~vv~IPt~--kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~------------------------------ 472 (656)
T PRK12898 425 LWSVYGLPVVRIPTN--RPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQ------------------------------ 472 (656)
T ss_pred HHHHHCCCeEEeCCC--CCccceecCCEEEeCHHHHHHHHHHHHHHHHhc------------------------------
Confidence 456677787777432 222334556677788888999999988764211
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
+.++||||+|...++.++..|.+.|+++..+||+++ +|+..+..+..+...|
T Consensus 473 --------------------------~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~V 524 (656)
T PRK12898 473 --------------------------GRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRI 524 (656)
T ss_pred --------------------------CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcE
Confidence 468999999999999999999999999999999865 4555555566566679
Q ss_pred EEEcCccccccCCC---CCc-----EEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 162 LVATAVAARGLDIP---HVK-----HVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 162 lv~T~~~~~Gvdl~---~~~-----~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+|||+++++|+|++ ++. +||+++.|.|...|.|++||+||.|.+|.+++|++..+.
T Consensus 525 lVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 525 TVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred EEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999 555 899999999999999999999999999999999997664
No 46
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.83 E-value=7.5e-20 Score=164.94 Aligned_cols=186 Identities=16% Similarity=0.303 Sum_probs=127.7
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeeccc-chhhHHHHhhhcC---------CCceeec--CCcc-----
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKK-GADQLEDFLHHHG---------YPVTSIH--GDRT----- 91 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~-~~~~~~~~l~~~~---------~~~~~~~--~~~~----- 91 (237)
+++++|.+.+....+++........+...++++||+|.. .++.+.+++.... +++.... ....
T Consensus 294 ~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~ 373 (675)
T PHA02653 294 TVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKR 373 (675)
T ss_pred EEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccch
Confidence 566677655433333332211111223347999999986 3677777664211 1111111 1000
Q ss_pred ---hhhHHHHhhhhh--hccCCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHh-hcCCCCEEE
Q psy15610 92 ---QKEREEAQQYTL--ISCDEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRF-RSGETPILV 163 (237)
Q Consensus 92 ---~~~~~~~~~~~~--~~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f-~~g~~~vlv 163 (237)
............ ....++++|||+++...++.+.+.|.+. ++.+..+||++++. ++.++.| ++|+.+|||
T Consensus 374 ~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILV 451 (675)
T PHA02653 374 AYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIII 451 (675)
T ss_pred hhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEe
Confidence 001111111111 1224568999999999999999999876 68999999999985 4666676 789999999
Q ss_pred EcCccccccCCCCCcEEEEec---CCC---------CHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 164 ATAVAARGLDIPHVKHVINFD---LPS---------DVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 164 ~T~~~~~Gvdl~~~~~Vi~~~---~p~---------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||+++++|+|+|++++||+++ .|. |.+.|.||+||+||. ++|.|+.|++....
T Consensus 452 ATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 452 STPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999999998 554 888999999999999 79999999987654
No 47
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.82 E-value=8e-20 Score=121.72 Aligned_cols=78 Identities=50% Similarity=0.905 Sum_probs=75.4
Q ss_pred HHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCC
Q psy15610 126 DFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203 (237)
Q Consensus 126 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 203 (237)
.+|+..++++..+||+++..+|..+++.|+++...+||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999987
No 48
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.1e-19 Score=152.33 Aligned_cols=111 Identities=32% Similarity=0.474 Sum_probs=100.4
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceE--EE-------eCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVT--SI-------HGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPH 176 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~--~~-------h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~ 176 (237)
.++.++|||++.++.++.+.++|.+.+..+. ++ ..||++.++..+++.|++|..+|||||+++++|+|+|+
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~ 443 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPE 443 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCc
Confidence 3457999999999999999999998877663 33 25799999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 177 VKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 177 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+|.||+|++-.|+..++||.||+||. ++|.+++++..+..
T Consensus 444 vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 444 VDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred ccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 99999999999999999999999998 78999998887733
No 49
>KOG0350|consensus
Probab=99.81 E-value=7.1e-20 Score=154.44 Aligned_cols=148 Identities=26% Similarity=0.454 Sum_probs=130.3
Q ss_pred CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHh
Q psy15610 20 STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 20 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (237)
.....+.++++.++..-|.-++..++....
T Consensus 399 slp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------------------------------------------------- 428 (620)
T KOG0350|consen 399 SLPSSLSHRLVVTEPKFKPLAVYALITSNK-------------------------------------------------- 428 (620)
T ss_pred ecChhhhhceeecccccchHhHHHHHHHhh--------------------------------------------------
Confidence 445567777777777777777777776653
Q ss_pred hhhhhccCCceEEEEeecccchHHHHHHHh----hCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC
Q psy15610 100 QYTLISCDEALTLVFVETKKGADQLEDFLH----HHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP 175 (237)
Q Consensus 100 ~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~ 175 (237)
..++|+|+++...+..+...|. .....+..+.|+++...|-+.++.|+.|.+++|||||++++|+|+-
T Consensus 429 --------~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~ 500 (620)
T KOG0350|consen 429 --------LNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVN 500 (620)
T ss_pred --------cceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccc
Confidence 5799999999999999998887 2355667789999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCC
Q psy15610 176 HVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 176 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
++++||+||+|.+...|+||+||.+|.|+.|.++++....+...|..+..
T Consensus 501 ~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 501 DVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999988877544
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.80 E-value=9.9e-19 Score=162.68 Aligned_cols=110 Identities=21% Similarity=0.316 Sum_probs=102.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
.+++++|||++.+.++.+++.|.+. +.++..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 3678999999999999999999875 78899999999999999999999999999999999999999999999999999
Q ss_pred CCC-CHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 185 LPS-DVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 185 ~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
.|. +...|+||+||+||.|..|.|++++.+..
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 875 78899999999999999999999997654
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.80 E-value=1.5e-18 Score=164.57 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=99.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
+++++|||++.+.++.+++.|.+. +.++..+||+|++.+|++++..|++|+++|||||+++++|+|+|++++||..+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~a 888 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecC
Confidence 578999999999999999999886 788999999999999999999999999999999999999999999999997655
Q ss_pred C-CCHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 186 P-SDVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 186 p-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
+ .+..+|+|++||+||.|..|.|++++...
T Consensus 889 d~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 3 46788999999999999999999988654
No 52
>PRK00254 ski2-like helicase; Provisional
Probab=99.80 E-value=5.3e-19 Score=162.88 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=117.9
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceee----------cCCc------chhhHHHHhh-hhhhccCCceEEEEeec
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSI----------HGDR------TQKEREEAQQ-YTLISCDEALTLVFVET 117 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~----------~~~~------~~~~~~~~~~-~~~~~~~~~~~iIF~~t 117 (237)
...+++.+|+|..+.+++++|+....+..... .+.. .......... ..-....+.++||||+|
T Consensus 168 ~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~s 247 (720)
T PRK00254 168 GRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNT 247 (720)
T ss_pred cCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcC
Confidence 45789999999999999999997543321100 0000 0000000000 00011246789999999
Q ss_pred ccchHHHHHHHhh---------------------------------CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEE
Q psy15610 118 KKGADQLEDFLHH---------------------------------HGYPVTSIHGDRTQKEREEALRRFRSGETPILVA 164 (237)
Q Consensus 118 ~~~~~~l~~~L~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 164 (237)
+..++.++..|.. ....+.++|++|++++|..+++.|++|.++||||
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 9999877655531 1235899999999999999999999999999999
Q ss_pred cCccccccCCCCCcEEEE-------ecCCC-CHHHHHHhhcccccCC--CCCceEEeecCCC
Q psy15610 165 TAVAARGLDIPHVKHVIN-------FDLPS-DVEEYVHRIGRTGRMG--NLDFPFSYNQPGY 216 (237)
Q Consensus 165 T~~~~~Gvdl~~~~~Vi~-------~~~p~-s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~ 216 (237)
|+.+++|+|+|..++||. ++.|. +...|.||+|||||.| ..|.+++++...+
T Consensus 328 T~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 328 TPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999999984 44433 5779999999999965 6689999987654
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.79 E-value=8.1e-19 Score=159.11 Aligned_cols=159 Identities=24% Similarity=0.368 Sum_probs=129.5
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhh------------------HHHHhhhhhhccCCceEEEEeec
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE------------------REEAQQYTLISCDEALTLVFVET 117 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~iIF~~t 117 (237)
+.+.|..|+|..+.+++++||...+.++..+.....+.. ............+...++||+||
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NT 262 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNT 262 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeC
Confidence 788999999999999999999988743333321111111 11111111223334589999999
Q ss_pred ccchHHHHHHHhhCC-CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhh
Q psy15610 118 KKGADQLEDFLHHHG-YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI 196 (237)
Q Consensus 118 ~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~ 196 (237)
+..++.++..|.+.. ..+..+||+++.++|..++++|++|.++++|||+.++.|+|+.+++.||+++.|.+...++||+
T Consensus 263 R~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRi 342 (814)
T COG1201 263 RSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRI 342 (814)
T ss_pred hHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhc
Confidence 999999999999885 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCCCceEEeecC
Q psy15610 197 GRTGR-MGNLDFPFSYNQP 214 (237)
Q Consensus 197 GR~~R-~g~~~~~~~~~~~ 214 (237)
||+|. .|....++++...
T Consensus 343 GRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 343 GRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccccccCCcccEEEEecC
Confidence 99996 6666777777654
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.79 E-value=4.8e-18 Score=155.20 Aligned_cols=108 Identities=21% Similarity=0.321 Sum_probs=96.5
Q ss_pred cCCceEEEEeeccc--------chHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC
Q psy15610 106 CDEALTLVFVETKK--------GADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP 175 (237)
Q Consensus 106 ~~~~~~iIF~~t~~--------~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~ 175 (237)
.++.+++|||+..+ .++.+++.|.+. ++++..+||+|++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip 548 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVP 548 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccC
Confidence 46789999999654 345566666654 57899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-CHHHHHHhhcccccCCCCCceEEeec
Q psy15610 176 HVKHVINFDLPS-DVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 176 ~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
++++||+++.|. +...+.|+.||+||.|..|.|++++.
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999986 68899999999999999999999995
No 55
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.79 E-value=1.5e-18 Score=159.85 Aligned_cols=109 Identities=18% Similarity=0.302 Sum_probs=99.4
Q ss_pred CceEEEEeecccchHHHHHHHhh---CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH---HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
.+++|||+++...++.+.+.|.+ .++.+..+||+|++++|.++++.|++|..+|+|||+++++|+++|++++||+++
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~G 288 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSG 288 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcC
Confidence 57899999999999999999986 378899999999999999999999999999999999999999999999999998
Q ss_pred CCC------------------CHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 185 LPS------------------DVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 185 ~p~------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
.|. |..++.||+||+||. .+|.||.+++..+.
T Consensus 289 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 289 LARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred cccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 764 345689999999999 79999999987643
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=2.5e-18 Score=156.64 Aligned_cols=102 Identities=27% Similarity=0.388 Sum_probs=88.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHH-----HHHHHhhc----CC-------CCEEEEcCccccc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKERE-----EALRRFRS----GE-------TPILVATAVAARG 171 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~-----~~~~~f~~----g~-------~~vlv~T~~~~~G 171 (237)
+.++||||+|++.++.+++.|.+.++ ..+||.|++.+|. ++++.|++ +. ..|||||+++++|
T Consensus 272 g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerG 349 (844)
T TIGR02621 272 GGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVG 349 (844)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhc
Confidence 57899999999999999999988775 8999999999999 77889987 43 6799999999999
Q ss_pred cCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCce-EEeecC
Q psy15610 172 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFP-FSYNQP 214 (237)
Q Consensus 172 vdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~-~~~~~~ 214 (237)
+|++. ++||+...| .+.|+||+||+||.|..+.+ +.++..
T Consensus 350 LDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 350 VNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99986 888887777 78999999999999976443 555543
No 57
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.1e-18 Score=158.74 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=101.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCC---CCCc-----E
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDI---PHVK-----H 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl---~~~~-----~ 179 (237)
+.++||||+|.+.++.++..|.+.++++..+||.+.+.++..+...++.| .|+|||++++||+|+ |.+. +
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 57999999999999999999999999999999999998888888887765 799999999999999 6888 9
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||+++.|.+...|.||+||+||.|.+|.+++|++..+.
T Consensus 506 VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 506 VIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred EEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999999999999999999997665
No 58
>KOG0351|consensus
Probab=99.78 E-value=1.4e-18 Score=160.35 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=133.9
Q ss_pred cceeEEeecc--cchhhHHHHhhhcCCCc-----------eeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHH
Q psy15610 57 ALTLVFVETK--KGADQLEDFLHHHGYPV-----------TSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQ 123 (237)
Q Consensus 57 ~~~i~f~~t~--~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~ 123 (237)
.++|..++|- ...+++.+.|+-.+... .+.+....+..................+||||.++..|+.
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~ 500 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQ 500 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHH
Confidence 6788888886 55788888886655331 1111111111111122233334557789999999999999
Q ss_pred HHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCC
Q psy15610 124 LEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 203 (237)
Q Consensus 124 l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 203 (237)
++..|...++....||+||++.+|+.+.+.|..++++|+++|-++++|+|.|++..||+|+.|.+.+.|+|-+|||||.|
T Consensus 501 vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG 580 (941)
T KOG0351|consen 501 VSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDG 580 (941)
T ss_pred HHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEeecCCCCCCC
Q psy15610 204 NLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 204 ~~~~~~~~~~~~~~~~~ 220 (237)
....|++|+...+....
T Consensus 581 ~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 581 LPSSCVLLYGYADISEL 597 (941)
T ss_pred CcceeEEecchhHHHHH
Confidence 99999999998865433
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=2.3e-18 Score=157.85 Aligned_cols=161 Identities=23% Similarity=0.286 Sum_probs=116.8
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCcee---------ecCC-c-c-hhhHH--HHhhh-hhhccCCceEEEEeecc
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTS---------IHGD-R-T-QKERE--EAQQY-TLISCDEALTLVFVETK 118 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~---------~~~~-~-~-~~~~~--~~~~~-~~~~~~~~~~iIF~~t~ 118 (237)
+.+.++|++|+|..+.+++++|+....+.... .+.. . . ...+. ..... .....++.++||||+++
T Consensus 167 ~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr 246 (674)
T PRK01172 167 NPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSR 246 (674)
T ss_pred CcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccH
Confidence 35678999999999999999999654332110 0000 0 0 00000 00011 11124567999999999
Q ss_pred cchHHHHHHHhhC-------------------------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccC
Q psy15610 119 KGADQLEDFLHHH-------------------------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLD 173 (237)
Q Consensus 119 ~~~~~l~~~L~~~-------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvd 173 (237)
+.++.++..|... ...+.++||++++++|..+++.|++|.++|||||+++++|+|
T Consensus 247 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvn 326 (674)
T PRK01172 247 KNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVN 326 (674)
T ss_pred HHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCC
Confidence 9999998888542 124789999999999999999999999999999999999999
Q ss_pred CCCCcEEEEec---------CCCCHHHHHHhhcccccCCC--CCceEEeecCC
Q psy15610 174 IPHVKHVINFD---------LPSDVEEYVHRIGRTGRMGN--LDFPFSYNQPG 215 (237)
Q Consensus 174 l~~~~~Vi~~~---------~p~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~ 215 (237)
+|...+|| .+ .|.+..+|.||+|||||.|. .|.+++++...
T Consensus 327 ipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 327 LPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred CcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99875555 33 25688999999999999884 56677776544
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=148.72 Aligned_cols=177 Identities=21% Similarity=0.262 Sum_probs=134.8
Q ss_pred HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCcee----------ecCCcchhhHHHHhh--hhh-
Q psy15610 37 KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTS----------IHGDRTQKEREEAQQ--YTL- 103 (237)
Q Consensus 37 k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~- 103 (237)
+++-|..=|++.. ++.|.|-+|+|..+.++++..|+..-..+.. +...-.+..+..... ..+
T Consensus 358 RLdGLI~RLr~l~-----~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 358 RLDGLIGRLRYLF-----PGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred chhhHHHHHHHhC-----CCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 6666666666653 3567999999999999999999654332111 111112222211111 112
Q ss_pred -hccC--CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEE
Q psy15610 104 -ISCD--EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHV 180 (237)
Q Consensus 104 -~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~V 180 (237)
.++. .+++|||++++..|..++++|..+|+++..||+|+++.+|..+.+.|.++.+.++|+|-+++.|+|||...+|
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVI 512 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVI 512 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHH
Confidence 1222 3689999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred EE---ecCCC-CHHHHHHhhcccccCC--CCCceEEeecCCCCC
Q psy15610 181 IN---FDLPS-DVEEYVHRIGRTGRMG--NLDFPFSYNQPGYGG 218 (237)
Q Consensus 181 i~---~~~p~-s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~ 218 (237)
+- .+..| |+..|.||+|||||-+ ..|++++++.++..-
T Consensus 513 FEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y 556 (830)
T COG1202 513 FESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY 556 (830)
T ss_pred HHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhh
Confidence 42 44455 8999999999999966 678888888887653
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.78 E-value=9.5e-18 Score=143.00 Aligned_cols=107 Identities=22% Similarity=0.325 Sum_probs=91.6
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC--ceEEEeCCCCHHHHHHH----HHHhhcCCCCEEEEcCccccccCCCCCcE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY--PVTSIHGDRTQKEREEA----LRRFRSGETPILVATAVAARGLDIPHVKH 179 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~----~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~ 179 (237)
.++.++||||+|.+.++.++..|.+.+. .+..+||++++.+|.+. ++.|+++...+||||+++++|+|++ ++.
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCE
Confidence 3568999999999999999999987765 48999999999999774 7889999999999999999999996 788
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCC----ceEEeecCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLD----FPFSYNQPG 215 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~----~~~~~~~~~ 215 (237)
||++..| +..|+||+||+||.|... .+++|....
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 8888766 889999999999988543 455555543
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.77 E-value=2e-17 Score=150.16 Aligned_cols=108 Identities=26% Similarity=0.384 Sum_probs=96.1
Q ss_pred cCCceEEEEeeccc--------chHHHHHHHhh--CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC
Q psy15610 106 CDEALTLVFVETKK--------GADQLEDFLHH--HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP 175 (237)
Q Consensus 106 ~~~~~~iIF~~t~~--------~~~~l~~~L~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~ 175 (237)
.++.+++|||+..+ .++.+++.|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP 525 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVP 525 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccC
Confidence 35678999998764 34556666654 367899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-CHHHHHHhhcccccCCCCCceEEeec
Q psy15610 176 HVKHVINFDLPS-DVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 176 ~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
++++||+++.|. +...|.|++||+||.|..|.|++++.
T Consensus 526 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 526 NATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999986 78899999999999999999999983
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.77 E-value=2e-18 Score=159.23 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=99.3
Q ss_pred CceEEEEeecccchHHHHHHHhh---CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH---HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
.+++|||+++...++.+++.|.. .++.+..+||++++++|.+.+..|++|..+|+|||+++++|+++|++++||+++
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~G 291 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSG 291 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECC
Confidence 57899999999999999999986 477899999999999999999999999999999999999999999999999977
Q ss_pred CCC------------------CHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 185 LPS------------------DVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 185 ~p~------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
.+. |..++.||+||+||. .+|.||.+++....
T Consensus 292 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 292 LERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 653 446899999999999 59999999986644
No 64
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=1.2e-17 Score=155.47 Aligned_cols=110 Identities=33% Similarity=0.492 Sum_probs=101.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCC--------CCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCc
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGD--------RTQKEREEALRRFRSGETPILVATAVAARGLDIPHVK 178 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~ 178 (237)
++.++||||+++..++.+.++|...++.+..+||. |++.+|..++..|++|..++||+|+++++|+|+|.++
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~ 443 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVD 443 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC
Confidence 46899999999999999999999889998889886 9999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 179 HVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 179 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+||+||+|+++..|+||+||+||.|. |.+++++..+..
T Consensus 444 ~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 444 LVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred EEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 99999999999999999999999874 778888776554
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.74 E-value=1.5e-17 Score=150.30 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=99.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC---------CCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP---------HVK 178 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~---------~~~ 178 (237)
+.++||||+|.+.++.++..|.+.|+++.++||.+.+.++..+..+++.| .|+|||+++++|+|++ .+.
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~ 501 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLA 501 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeE
Confidence 57999999999999999999999999999999999999988887777766 7999999999999999 889
Q ss_pred EEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 179 HVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 179 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+|+++++|..... .|+.||+||.|.+|.+++|++..+.
T Consensus 502 vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 502 VIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred EEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999988766 9999999999999999999998665
No 66
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.74 E-value=2.7e-17 Score=148.67 Aligned_cols=108 Identities=31% Similarity=0.399 Sum_probs=102.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec---
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD--- 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~--- 184 (237)
+.+++|||+|...++.++++|...|+++..+||+++..+|..+++.|++|.+.|+|||+.+.+|+|+|++++|++++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dadi 521 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK 521 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 185 --LPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 185 --~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
.|.+...|+||+||+||. ..|.+++|+....
T Consensus 522 fG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~ 554 (655)
T TIGR00631 522 EGFLRSERSLIQTIGRAARN-VNGKVIMYADKIT 554 (655)
T ss_pred ccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCC
Confidence 788999999999999998 5899999988653
No 67
>KOG0337|consensus
Probab=99.73 E-value=4.1e-18 Score=141.29 Aligned_cols=165 Identities=32% Similarity=0.435 Sum_probs=150.3
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+|+.=+.+|..|.+.-+......++..+..+.+.+|..+|+.++.....
T Consensus 212 fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~------------------------------- 260 (529)
T KOG0337|consen 212 FAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK------------------------------- 260 (529)
T ss_pred HHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc-------------------------------
Confidence 4555677898888877778888899999999999999999999987631
Q ss_pred CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 82 PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
..+++|||+|..+++.+...|...|+....++|+++++-|..-...|+.+...+
T Consensus 261 --------------------------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~ 314 (529)
T KOG0337|consen 261 --------------------------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSI 314 (529)
T ss_pred --------------------------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccce
Confidence 358999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
+|.|+++.+|+|+|..+.||+||.|.+..-|+||+||+.|.|+.|..|.++.+.+.++.--.
T Consensus 315 lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 315 LVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred EEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999888765443
No 68
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.73 E-value=3e-17 Score=109.75 Aligned_cols=81 Identities=48% Similarity=0.828 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 123 QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
.+++.|...++.+..+||++++.+|...++.|+++...++++|+++++|+|+|.++.||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy15610 203 G 203 (237)
Q Consensus 203 g 203 (237)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 69
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.72 E-value=5.2e-17 Score=147.49 Aligned_cols=106 Identities=32% Similarity=0.417 Sum_probs=100.8
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC--
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL-- 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~-- 185 (237)
+.+++|||+|...++.+++.|...|+++..+||++++.+|..++..|++|.+.|+|||+.+++|+|+|++++||+++.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ei 525 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADK 525 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ---CCCHHHHHHhhcccccCCCCCceEEeecC
Q psy15610 186 ---PSDVEEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 186 ---p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
|.+...|+||+||+||. ..|.+++|+..
T Consensus 526 fG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 526 EGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred cccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 67999999999999996 68999999984
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.72 E-value=6.3e-17 Score=143.41 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=99.4
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc-CccccccCCCCCcEEEEecC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT-AVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
.+.+.+|||.+.++++.+++.|.+.+.++..+||+++.++|..+++.|++|...+||+| +.+++|+|+|.+++||++.+
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p 422 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP 422 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC
Confidence 35788999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 186 PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+.|...|+||+||++|.+..+...++++-.+.
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred CcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 99999999999999998866555555544443
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.72 E-value=1e-16 Score=144.12 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=103.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCC-------CcEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPH-------VKHV 180 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~-------~~~V 180 (237)
+.++||||+|...++.++..|.+.|++...+|++ +.+|+..+..|+.+...|+|||++++||.|++. ..+|
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~V 482 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYV 482 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEE
Confidence 6899999999999999999999999999999998 889999999999999999999999999999998 5599
Q ss_pred EEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 181 INFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 181 i~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
|+++.|.|...+.|+.||+||.|.+|.+.+|++..+.
T Consensus 483 I~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred EecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999999999999999998765
No 72
>KOG0352|consensus
Probab=99.70 E-value=2.2e-17 Score=137.36 Aligned_cols=113 Identities=25% Similarity=0.441 Sum_probs=108.1
Q ss_pred ceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPSD 188 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s 188 (237)
+-.||||.|++.|++++..|...|+++..||.|+...+|..+.+.+-++++.|+++|..+++|+|-|++..||++++|.|
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 189 VEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 189 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
...|+|-.|||||.|.++.|-+|++..+.+..+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred hHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 999999999999999999999999988776543
No 73
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.8e-16 Score=143.74 Aligned_cols=108 Identities=25% Similarity=0.281 Sum_probs=101.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC---CCc-----E
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP---HVK-----H 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~---~~~-----~ 179 (237)
+.++||||.|...++.++..|.+.+++...+|+++...+++.+..+++.|. |+|+|++++||.|++ ++. +
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLh 517 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLA 517 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcE
Confidence 689999999999999999999999999999999999888888888887776 999999999999995 788 9
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||+++.|.|...+.|+.||+||.|.+|.+.+|++..+.
T Consensus 518 VI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 518 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred EEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 99999999999999999999999999999999998865
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.9e-16 Score=143.06 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=95.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC-CCCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG-ETPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
.+.++||||.+...++.++..| + +.++||+++..+|.++++.|+++ .+++||+|+++++|+|+|++++||+++.
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 3689999999999888888877 2 45799999999999999999975 7899999999999999999999999998
Q ss_pred CC-CHHHHHHhhcccccCCCCCce-------EEeecCCCCCCC
Q psy15610 186 PS-DVEEYVHRIGRTGRMGNLDFP-------FSYNQPGYGGSY 220 (237)
Q Consensus 186 p~-s~~~~~Q~~GR~~R~g~~~~~-------~~~~~~~~~~~~ 220 (237)
|. |..+|+||+||++|.+..+.+ |.+++++..+.+
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 85 999999999999998866554 777877766544
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.67 E-value=3.4e-16 Score=148.01 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=94.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCc---eEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYP---VTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
.+.+|||+++...++.+++.|...+++ +..+||++++++|.++++. .|..+|+|||+++++|+++|++++||+++
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECC
Confidence 578999999999999999999887654 6789999999999999876 47789999999999999999999999985
Q ss_pred ---------------CC---CCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 185 ---------------LP---SDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 185 ---------------~p---~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
.| .|..+|.||+||+||. .+|.||.+++..+
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 23 4668999999999999 6999999998654
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.67 E-value=7.7e-16 Score=146.01 Aligned_cols=158 Identities=16% Similarity=0.247 Sum_probs=117.9
Q ss_pred cccceeEEeecccchhhHHHHhhhc--------CCCceeecCCcch-------hhHHHHhh--hhhhccCCceEEEEeec
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHH--------GYPVTSIHGDRTQ-------KEREEAQQ--YTLISCDEALTLVFVET 117 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~--------~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~iIF~~t 117 (237)
++.++|+||+|.. .+.+++++... .+++...+..... .....+.. ..+.....+.+|||+++
T Consensus 210 pdLKlIlmSATld-~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 210 PDLKIIITSATID-PERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred CCCeEEEEeCCcC-HHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 5678999999996 57788888532 2333332222111 01111111 11122356789999999
Q ss_pred ccchHHHHHHHhhCC---CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC---------
Q psy15610 118 KKGADQLEDFLHHHG---YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL--------- 185 (237)
Q Consensus 118 ~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~--------- 185 (237)
...++.+.+.|...+ ..+..+||++++++|.++++.+ +..+|++||+++++|+++|++++||+++.
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 999999999998764 4588999999999999886654 23689999999999999999999999873
Q ss_pred ---------CCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 186 ---------PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 186 ---------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|.|..++.||+||+||.| +|.||.+++..+
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 336789999999999998 999999998654
No 77
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.67 E-value=3.4e-16 Score=146.26 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=97.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
.+.++|||+.....++.++++|...++.+..++|+++..+|...++.|++.. ..+|++|.+++.|+|++.+++||+|
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 4689999999999999999999999999999999999999999999998643 3578999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEee
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSYN 212 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~ 212 (237)
|+||+|....|+.||++|+|+...+.+|.
T Consensus 566 D~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 566 DSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999987665543
No 78
>KOG0354|consensus
Probab=99.66 E-value=5.6e-16 Score=138.16 Aligned_cols=107 Identities=37% Similarity=0.517 Sum_probs=91.3
Q ss_pred ccCCceEEEEeecccchHHHHHHHhh-C--CCceEEE--------eCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccC
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHH-H--GYPVTSI--------HGDRTQKEREEALRRFRSGETPILVATAVAARGLD 173 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~-~--~~~~~~~--------h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvd 173 (237)
..+..++||||.++..+..+..+|.. . +++...+ ..+|++.+...++++|++|+++|||||+++++|+|
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLD 489 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLD 489 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCC
Confidence 45567899999999999999998873 2 2232222 24799999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 174 IPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 174 l~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
+++|+.||.||.-.|+..++||+|| ||.. .|.++++..
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t 527 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTT 527 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEc
Confidence 9999999999999999999999999 9984 677777776
No 79
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.66 E-value=5.6e-16 Score=141.80 Aligned_cols=160 Identities=21% Similarity=0.231 Sum_probs=119.5
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCc-eeecCCcchh-------------------hHHHHhh-hhhhccCCceEEEE
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPV-TSIHGDRTQK-------------------EREEAQQ-YTLISCDEALTLVF 114 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~-~~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~~iIF 114 (237)
..+++..|+|.+++++++.|++...+.. ....+.+++. ..+.... ......++++++||
T Consensus 180 ~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvF 259 (766)
T COG1204 180 LIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVF 259 (766)
T ss_pred ceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 3689999999999999999998875411 1111111111 1111111 22234567899999
Q ss_pred eecccchHHHHHHHhhC-------------------------------------CCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 115 VETKKGADQLEDFLHHH-------------------------------------GYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 115 ~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
|+++..+...+..+... ...+.++|++++.++|..+.+.|++|
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g 339 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG 339 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC
Confidence 99999988887777620 12478999999999999999999999
Q ss_pred CCCEEEEcCccccccCCCCCcEEEE----ec-----CCCCHHHHHHhhcccccCC--CCCceEEeecCC
Q psy15610 158 ETPILVATAVAARGLDIPHVKHVIN----FD-----LPSDVEEYVHRIGRTGRMG--NLDFPFSYNQPG 215 (237)
Q Consensus 158 ~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~-----~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 215 (237)
.++||+||+.+++|+|+|.-.+||- |+ .+.+.-++.||.|||||.| ..|.++++....
T Consensus 340 ~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 340 KIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred CceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 9999999999999999999888773 55 3457889999999999987 446666666333
No 80
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=7e-16 Score=141.19 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=100.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCC---CCc-----E
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIP---HVK-----H 179 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~---~~~-----~ 179 (237)
+.++||||+|...++.++.+|...+++..++|+ .+.+|+..+..|..+...|+|||++++||.|++ .+. +
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~ 675 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLF 675 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCce
Confidence 689999999999999999999999999999997 688999999999999999999999999999999 343 4
Q ss_pred EEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 180 VINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 180 Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
||.++.|.|...|.|+.||+||.|.+|.+++|++..+.
T Consensus 676 VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 676 ILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 58889999999999999999999999999999998765
No 81
>KOG0349|consensus
Probab=99.65 E-value=2.9e-15 Score=125.19 Aligned_cols=196 Identities=24% Similarity=0.361 Sum_probs=140.2
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec-hh-HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh-
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE-QD-KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH- 78 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~-k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~- 78 (237)
++++.|-=|..+++..+....+.+.|....+.. -+ -...|...|..... ...--...--.++++..+-...|..
T Consensus 418 ~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~v---h~kdn~~pg~~Spe~~s~a~kilkgE 494 (725)
T KOG0349|consen 418 VGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKV---HTKDNLLPGQVSPENPSSATKILKGE 494 (725)
T ss_pred hhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCc---ccccccccccCCCCChhhhhHHhcCc
Confidence 567788889999998888888888888765443 22 33444444443321 0000111112222222222221111
Q ss_pred cCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhC---CCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 79 HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
.+..+ +..-...++||||.|...|+.+++++... .+.+.++||+..|.+|.+.++.|+
T Consensus 495 y~v~a-------------------i~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fk 555 (725)
T KOG0349|consen 495 YGVVA-------------------IRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFK 555 (725)
T ss_pred hhhhh-------------------hhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhh
Confidence 11110 11122578999999999999999999886 468899999999999999999999
Q ss_pred cCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCCCC
Q psy15610 156 SGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGS 219 (237)
Q Consensus 156 ~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 219 (237)
.+..+.||||+++++|+|+..+-++|+...|.+...|+||+||+||..+-|.+|.++.......
T Consensus 556 k~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekv 619 (725)
T KOG0349|consen 556 KFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKV 619 (725)
T ss_pred hcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchhe
Confidence 9999999999999999999999999999999999999999999999877788888776554433
No 82
>KOG0329|consensus
Probab=99.64 E-value=3.9e-17 Score=127.74 Aligned_cols=123 Identities=28% Similarity=0.477 Sum_probs=106.8
Q ss_pred hHHHHhhcceeEEEeecc-CCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC
Q psy15610 2 LAKEFLYRYIFLAIGRVG-STSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG 80 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~ 80 (237)
+.++||.||+.|-+..|. .+++++.|+|+...+++|...|.+||+...
T Consensus 234 vC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~Le------------------------------- 282 (387)
T KOG0329|consen 234 VCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLE------------------------------- 282 (387)
T ss_pred HHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhh-------------------------------
Confidence 468999999999888777 889999999999999998888888888764
Q ss_pred CCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 81 YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
.++++||+.+... | . |. -+
T Consensus 283 ---------------------------FNQVvIFvKsv~R-------l-----------------------~-f~---kr 301 (387)
T KOG0329|consen 283 ---------------------------FNQVVIFVKSVQR-------L-----------------------S-FQ---KR 301 (387)
T ss_pred ---------------------------hcceeEeeehhhh-------h-----------------------h-hh---hh
Confidence 5789999988764 0 0 21 12
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+++|+.+++|+|+-.++.+++||+|.++..|+||+|||||.|..|.++.|++....
T Consensus 302 -~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 302 -LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred -hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 78999999999999999999999999999999999999999999999999986543
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.63 E-value=2.5e-15 Score=146.37 Aligned_cols=140 Identities=20% Similarity=0.321 Sum_probs=117.4
Q ss_pred HHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCc
Q psy15610 4 KEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPV 83 (237)
Q Consensus 4 ~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~ 83 (237)
.+++.++..+.+........+|.|.|+.++..+| ..|.+++...
T Consensus 286 ~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----------------------------------- 329 (1638)
T PRK14701 286 VKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL----------------------------------- 329 (1638)
T ss_pred HHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-----------------------------------
Confidence 3556788888877666778889999887766555 5677777654
Q ss_pred eeecCCcchhhHHHHhhhhhhccCCceEEEEeecccc---hHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC
Q psy15610 84 TSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKG---ADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP 160 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 160 (237)
+.++||||+|++. ++.++..|...|+++..+||+ |...++.|++|+.+
T Consensus 330 ------------------------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~ 380 (1638)
T PRK14701 330 ------------------------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID 380 (1638)
T ss_pred ------------------------CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC
Confidence 3679999999886 489999999999999999995 88999999999999
Q ss_pred EEEEc----CccccccCCCC-CcEEEEecCCC---CHHHHHHhh-------------cccccCCCCCce
Q psy15610 161 ILVAT----AVAARGLDIPH-VKHVINFDLPS---DVEEYVHRI-------------GRTGRMGNLDFP 208 (237)
Q Consensus 161 vlv~T----~~~~~Gvdl~~-~~~Vi~~~~p~---s~~~~~Q~~-------------GR~~R~g~~~~~ 208 (237)
|||+| ++++||+|+|+ +++||++++|. +.+.|.|-. ||++|.|.+..+
T Consensus 381 VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 381 YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 99999 58999999999 99999999999 777666655 999999977666
No 84
>KOG0948|consensus
Probab=99.61 E-value=4.7e-16 Score=136.99 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=134.3
Q ss_pred cccccceeEEeecccchhhHHHHhhh-cCCCceeecCCcchhhHHHHhh-------------------------------
Q psy15610 53 LGDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKEREEAQQ------------------------------- 100 (237)
Q Consensus 53 ~~~~~~~i~f~~t~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------- 100 (237)
+|.+-+.+.+|+|.+++.++++|+.. +..+|.....+.+..+..+-+.
T Consensus 263 lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 46678899999999999999999977 4556666666655555433322
Q ss_pred ---------------------------------hhhhccCCceEEEEeecccchHHHHHHHhhCC---------------
Q psy15610 101 ---------------------------------YTLISCDEALTLVFVETKKGADQLEDFLHHHG--------------- 132 (237)
Q Consensus 101 ---------------------------------~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~--------------- 132 (237)
..+...+..++|||+-+++.|+..+--+.+..
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 11123345789999999999998855443321
Q ss_pred ------------------------CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE----ec
Q psy15610 133 ------------------------YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN----FD 184 (237)
Q Consensus 133 ------------------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~ 184 (237)
..++++|+|+-|--++-+.-.|++|-+++|++|..++.|+|+|.-++|+- ||
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 24889999999999999999999999999999999999999998877764 33
Q ss_pred CC----CCHHHHHHhhcccccCC--CCCceEEeecCCCCCCCCCCCCCCCCCCCCccC
Q psy15610 185 LP----SDVEEYVHRIGRTGRMG--NLDFPFSYNQPGYGGSYGGSSSQNSNAPDWWND 236 (237)
Q Consensus 185 ~p----~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
-. .|..+|+||.|||||-| ..|.||++++.... +.-.++-.+|.+|.+++
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~--~~~ak~m~kG~aD~LnS 558 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKME--PQVAKDMLKGSADPLNS 558 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecCcCC--HHHHHHHhcCCCcchhh
Confidence 22 16788999999999988 45777777765443 33333445555665554
No 85
>KOG0353|consensus
Probab=99.61 E-value=1.4e-15 Score=125.23 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=107.6
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
....++..||||-+++.++.++..|+.+|+.+..||..|.|+++.-..+.+..|+++|+|+|-++++|+|-|+++.||+.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH-------------------------------------------hhcccccCCCCCceEEeecCCCC
Q psy15610 184 DLPSDVEEYVH-------------------------------------------RIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 184 ~~p~s~~~~~Q-------------------------------------------~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
++|.|.+.|+| -.||+||.|.+..|++|+.-++.
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999 67999999999999999875543
No 86
>KOG0951|consensus
Probab=99.61 E-value=1.9e-15 Score=139.14 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=140.6
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhh--------------------HHHHhhhhhhccCCceEEEE
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE--------------------REEAQQYTLISCDEALTLVF 114 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~iIF 114 (237)
.+.+.+.+|+|.++.++++.+|.......+++.+..++.+ -+...+.++...+.+++|||
T Consensus 473 e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVF 552 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVF 552 (1674)
T ss_pred cCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3678899999999999999988776633333322222211 12333356667788999999
Q ss_pred eecccchHHHHHHHhhC-------------------------------------CCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 115 VETKKGADQLEDFLHHH-------------------------------------GYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 115 ~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
+.+++.....++.++.. .+.++.+|+||+..+|..+.+.|++|
T Consensus 553 VHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g 632 (1674)
T KOG0951|consen 553 VHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG 632 (1674)
T ss_pred EEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC
Confidence 99999777665555410 24689999999999999999999999
Q ss_pred CCCEEEEcCccccccCCCCCcEEEE----ecC------CCCHHHHHHhhcccccCC--CCCceEEeecCCCCCCCCCCCC
Q psy15610 158 ETPILVATAVAARGLDIPHVKHVIN----FDL------PSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGYGGSYGGSSS 225 (237)
Q Consensus 158 ~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~~------p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~~~ 225 (237)
.++|+++|..++||+|+|.-+++|- |++ +.++.+.+||.|||||.+ +.|.+++.....+.++|-+.-+
T Consensus 633 ~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn 712 (1674)
T KOG0951|consen 633 HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMN 712 (1674)
T ss_pred ceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhh
Confidence 9999999999999999999888884 554 338999999999999955 6788999999999999999877
Q ss_pred CCCCCCCC
Q psy15610 226 QNSNAPDW 233 (237)
Q Consensus 226 ~~~~~~~~ 233 (237)
.+.+.++.
T Consensus 713 ~qLpiesq 720 (1674)
T KOG0951|consen 713 QQLPIESQ 720 (1674)
T ss_pred hcCCChHH
Confidence 77776544
No 87
>PRK09401 reverse gyrase; Reviewed
Probab=99.59 E-value=1.2e-14 Score=138.53 Aligned_cols=131 Identities=22% Similarity=0.340 Sum_probs=109.3
Q ss_pred HHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCce
Q psy15610 5 EFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVT 84 (237)
Q Consensus 5 ~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~ 84 (237)
.++.+++.+.+........+|.|.|+.++ +|...|..++...
T Consensus 286 ~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l------------------------------------ 327 (1176)
T PRK09401 286 KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL------------------------------------ 327 (1176)
T ss_pred HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc------------------------------------
Confidence 34567777777666667788888887665 5667777777654
Q ss_pred eecCCcchhhHHHHhhhhhhccCCceEEEEeecccc---hHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCE
Q psy15610 85 SIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKG---ADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPI 161 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 161 (237)
+.++||||+++.. ++.++.+|...|+++..+||+| .+.++.|++|+++|
T Consensus 328 -----------------------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~V 379 (1176)
T PRK09401 328 -----------------------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDV 379 (1176)
T ss_pred -----------------------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCE
Confidence 3579999999888 9999999999999999999999 23459999999999
Q ss_pred EEE----cCccccccCCCC-CcEEEEecCCC------CHHHHHHhhccccc
Q psy15610 162 LVA----TAVAARGLDIPH-VKHVINFDLPS------DVEEYVHRIGRTGR 201 (237)
Q Consensus 162 lv~----T~~~~~Gvdl~~-~~~Vi~~~~p~------s~~~~~Q~~GR~~R 201 (237)
||+ |++++||+|+|+ +++||+|+.|. ....+.++.||...
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999 689999999999 89999999998 56778899998853
No 88
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.53 E-value=1.5e-13 Score=121.37 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=126.2
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCc-------------eeecCCcchhhH
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPV-------------TSIHGDRTQKER 95 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~~ 95 (237)
+++++|.++.-+.....-...-.+ .-=.++|++|+=+-.-....++..+.+. ..+.........
T Consensus 387 LVIiDEQHRFGV~QR~~L~~KG~~---~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 387 LVIIDEQHRFGVHQRLALREKGEQ---NPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred EEEEeccccccHHHHHHHHHhCCC---CCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHH
Confidence 467788776644443322211000 1127899999655333333333333332 222222222222
Q ss_pred HHHhhhhhhccCCceEEEEeecccch--------HHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc
Q psy15610 96 EEAQQYTLISCDEALTLVFVETKKGA--------DQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVAT 165 (237)
Q Consensus 96 ~~~~~~~~~~~~~~~~iIF~~t~~~~--------~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 165 (237)
..+ .-...++.++.+.|+-.+.. ..+.+.|... +.++..+||.|++.+++.+.+.|++|+++|||||
T Consensus 464 e~i---~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 464 ERI---REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT 540 (677)
T ss_pred HHH---HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 211 11234688899999876644 4455666533 6679999999999999999999999999999999
Q ss_pred CccccccCCCCCcEEEEecCCC-CHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 166 AVAARGLDIPHVKHVINFDLPS-DVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 166 ~~~~~Gvdl~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
.+.+.|||+|+++++|..+... ..+++.|-.||+||.+..+.|++++.+..
T Consensus 541 TVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 541 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999988888764 79999999999999999999999998877
No 89
>KOG0392|consensus
Probab=99.53 E-value=8.2e-14 Score=128.29 Aligned_cols=168 Identities=17% Similarity=0.256 Sum_probs=131.9
Q ss_pred HHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCc-eeecCCcchhhHHHHhhhhhhcc----------
Q psy15610 38 RSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPV-TSIHGDRTQKEREEAQQYTLISC---------- 106 (237)
Q Consensus 38 ~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 106 (237)
++++.++++++ .++.+.-.+....+...+...+-.. ...|+......++....+.+..+
T Consensus 1268 LqYlrKLcnHp----------aLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~ 1337 (1549)
T KOG0392|consen 1268 LQYLRKLCNHP----------ALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSD 1337 (1549)
T ss_pred HHHHHHhcCCc----------ceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcch
Confidence 55666666655 6777766666777777776666555 34466666777777766666422
Q ss_pred -CCceEEEEeecccchHHHHHHHhhC---CCceEEEeCCCCHHHHHHHHHHhhcC-CCCEE-EEcCccccccCCCCCcEE
Q psy15610 107 -DEALTLVFVETKKGADQLEDFLHHH---GYPVTSIHGDRTQKEREEALRRFRSG-ETPIL-VATAVAARGLDIPHVKHV 180 (237)
Q Consensus 107 -~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~~~Gvdl~~~~~V 180 (237)
.+++++|||.-...++.+++-|.+. ......+.|+.++.+|.++.++|+++ .++|| ++|.+++.|+|+..+|.|
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 4678999999999999998888665 34456899999999999999999998 67876 567999999999999999
Q ss_pred EEecCCCCHHHHHHhhcccccCCCCCce--EEeecCC
Q psy15610 181 INFDLPSDVEEYVHRIGRTGRMGNLDFP--FSYNQPG 215 (237)
Q Consensus 181 i~~~~p~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~~ 215 (237)
|+++.+|+|..-+|.+.||+|.||+..+ |-++..+
T Consensus 1418 VFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9999999999999999999999998663 4444443
No 90
>KOG0952|consensus
Probab=99.53 E-value=2.1e-14 Score=130.68 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=142.3
Q ss_pred hHHHHHHHhhcCchhhh--cccccceeEEeecccchhhHHHHhhhcCC-CceeecCCcchhh------------------
Q psy15610 36 DKRSCLLDLLSSPSQEE--LGDEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRTQKE------------------ 94 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~--~~~~~~~i~f~~t~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~------------------ 94 (237)
++=..|-.++....... -+..-+++..|+|.++.+++++||.-... -..++....++.+
T Consensus 253 ~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~ 332 (1230)
T KOG0952|consen 253 DRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKK 332 (1230)
T ss_pred cccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhh
Confidence 34444444444333111 13467899999999999999999987521 2222222222211
Q ss_pred --HHHHhh-hhhhccCCceEEEEeecccchHHHHHHHhhC-----------------------CCceEEEeCCCCHHHHH
Q psy15610 95 --REEAQQ-YTLISCDEALTLVFVETKKGADQLEDFLHHH-----------------------GYPVTSIHGDRTQKERE 148 (237)
Q Consensus 95 --~~~~~~-~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~-----------------------~~~~~~~h~~~~~~~r~ 148 (237)
.+.... ..-....+.+++|||.++......++.|.+. ...+.++|+||..++|.
T Consensus 333 ~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 333 NIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 111111 1223456899999999999888888777532 13478999999999999
Q ss_pred HHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE----ecCCC------CHHHHHHhhccccc--CCCCCceEEeecCCC
Q psy15610 149 EALRRFRSGETPILVATAVAARGLDIPHVKHVIN----FDLPS------DVEEYVHRIGRTGR--MGNLDFPFSYNQPGY 216 (237)
Q Consensus 149 ~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~~p~------s~~~~~Q~~GR~~R--~g~~~~~~~~~~~~~ 216 (237)
-..+.|..|.++||+||..++||+|+|+--++|- ||... +.-+.+|..||||| .+..|.++++.....
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 9999999999999999999999999998776663 44432 56688999999999 557899999999999
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy15610 217 GGSYGGSSSQNSNAPDW 233 (237)
Q Consensus 217 ~~~~~~~~~~~~~~~~~ 233 (237)
...|-.+..+....++.
T Consensus 493 l~~Y~sLl~~~~piES~ 509 (1230)
T KOG0952|consen 493 LDHYESLLTGQNPIESQ 509 (1230)
T ss_pred HHHHHHHHcCCChhHHH
Confidence 99998877776665543
No 91
>KOG0385|consensus
Probab=99.51 E-value=4.1e-14 Score=125.24 Aligned_cols=106 Identities=23% Similarity=0.382 Sum_probs=98.4
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC---CCEEEEcCccccccCCCCCcEEEE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE---TPILVATAVAARGLDIPHVKHVIN 182 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gvdl~~~~~Vi~ 182 (237)
.++.+++||..-....+.+.+|+.-.++.+..+.|+++.++|...++.|.+.. +-.|++|.+++.|+|+..+++||.
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 34799999999999999999999999999999999999999999999998765 457899999999999999999999
Q ss_pred ecCCCCHHHHHHhhcccccCCCCCceEEe
Q psy15610 183 FDLPSDVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 183 ~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
||..|+|..-+|.+.||+|+|+..-+.+|
T Consensus 565 yDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 565 YDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred ecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 99999999999999999999998766555
No 92
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.50 E-value=2e-13 Score=116.23 Aligned_cols=84 Identities=26% Similarity=0.464 Sum_probs=73.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCC--CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHG--YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
+.+++|||+|...++.++..|...+ ..+..+||.+++.+|++. ++..+||||+++++|+|++.. +|| ++
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~- 342 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS- 342 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-
Confidence 5789999999999999999998764 567889999999988754 378999999999999999976 555 45
Q ss_pred CCCHHHHHHhhcccc
Q psy15610 186 PSDVEEYVHRIGRTG 200 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~ 200 (237)
|.+.+.|+||+||+|
T Consensus 343 p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHhhhcccCC
Confidence 889999999999987
No 93
>KOG0922|consensus
Probab=99.48 E-value=1.9e-13 Score=119.81 Aligned_cols=208 Identities=16% Similarity=0.263 Sum_probs=149.5
Q ss_pred HhhcceeEEEeeccCCCCCceeE-EEEeechhHH----HHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh--
Q psy15610 6 FLYRYIFLAIGRVGSTSENITQR-IAWVDEQDKR----SCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH-- 78 (237)
Q Consensus 6 ~l~~~~~i~~~~~~~~~~~i~~~-~~~~~~~~k~----~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~-- 78 (237)
||+|-+.+ +|......++++ +++++|.+-+ +.|+.+|++.. +-.+++++|+.|+|.+ ++.+.++|..
T Consensus 145 ymTDG~LL---RE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~--~~R~~LklIimSATld-a~kfS~yF~~a~ 218 (674)
T KOG0922|consen 145 YMTDGMLL---REILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKIL--KKRPDLKLIIMSATLD-AEKFSEYFNNAP 218 (674)
T ss_pred EecchHHH---HHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHH--hcCCCceEEEEeeeec-HHHHHHHhcCCc
Confidence 44444444 244444556666 5677776543 45555555432 2246789999999987 6677777755
Q ss_pred ------cCCCceeecCCc-chhhHHHHhhhhh---hccCCceEEEEeecccchHHHHHHHhhC----C--C--ceEEEeC
Q psy15610 79 ------HGYPVTSIHGDR-TQKEREEAQQYTL---ISCDEALTLVFVETKKGADQLEDFLHHH----G--Y--PVTSIHG 140 (237)
Q Consensus 79 ------~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~iIF~~t~~~~~~l~~~L~~~----~--~--~~~~~h~ 140 (237)
..|++..+...- ...+........+ ...+.+.++||...+++.+.+.+.|.+. + . -+..+||
T Consensus 219 i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 219 ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 556776555442 3333333322222 2366778999999999998888888654 1 1 2568999
Q ss_pred CCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec------------------CCCCHHHHHHhhcccccC
Q psy15610 141 DRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD------------------LPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 141 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~------------------~p~s~~~~~Q~~GR~~R~ 202 (237)
+++.++..++++.-..|.-+|+++|++++..+.++.+.+||..+ .|.|..+-.||.|||||.
T Consensus 299 aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt 378 (674)
T KOG0922|consen 299 ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT 378 (674)
T ss_pred cCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC
Confidence 99999999999888889999999999999999999999999633 256889999999999999
Q ss_pred CCCCceEEeecCCCCCCC
Q psy15610 203 GNLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 203 g~~~~~~~~~~~~~~~~~ 220 (237)
| +|.||-+++..+-+.+
T Consensus 379 ~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 379 G-PGKCYRLYTESAYDKM 395 (674)
T ss_pred C-CceEEEeeeHHHHhhc
Confidence 7 9999999987665433
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.48 E-value=4.8e-13 Score=124.17 Aligned_cols=112 Identities=20% Similarity=0.326 Sum_probs=103.3
Q ss_pred cCCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
..++++-...|..+..+.+++.|... ..++.+.||-|++.+-+.++..|.+|.++|||||.+.+.|+|+|+++.+|.-
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe
Confidence 45789888899999999999999987 6789999999999999999999999999999999999999999999999987
Q ss_pred cCCC-CHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 184 DLPS-DVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 184 ~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+... ..++++|..||+||....+.||+++.+.+.
T Consensus 881 ~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~ 915 (1139)
T COG1197 881 RADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA 915 (1139)
T ss_pred ccccccHHHHHHhccccCCccceEEEEEeecCccc
Confidence 7764 899999999999999999999999987554
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=6.8e-13 Score=121.20 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=100.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC----------
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV---------- 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~---------- 177 (237)
+.++||||+|...++.++..|...+++...+|+. +.+|+..+..|+.+...|+|||++++||+|++--
T Consensus 430 grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~ 507 (830)
T PRK12904 430 GQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAL 507 (830)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhh
Confidence 6899999999999999999999999999999995 7899999999999999999999999999999763
Q ss_pred ----------------------------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 ----------------------------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 ----------------------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-+||....|.|...-.|-.||+||.|.+|.+-+|++..+.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 508 LEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 3688888999999999999999999999999999997765
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=5.2e-13 Score=116.56 Aligned_cols=94 Identities=30% Similarity=0.509 Sum_probs=90.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
.+.+++|||.+..+++.++..+...+. +..+.++.+..+|+.+++.|+.|.+++|+++.++.+|+|+|+++++|...+.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 467999999999999999999988877 8899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHhhccccc
Q psy15610 187 SDVEEYVHRIGRTGR 201 (237)
Q Consensus 187 ~s~~~~~Q~~GR~~R 201 (237)
.|+..|.||+||..|
T Consensus 361 ~S~~~~~Q~lGR~LR 375 (442)
T COG1061 361 GSRRLFIQRLGRGLR 375 (442)
T ss_pred CcHHHHHHHhhhhcc
Confidence 999999999999999
No 97
>KOG0950|consensus
Probab=99.47 E-value=6e-13 Score=120.49 Aligned_cols=164 Identities=25% Similarity=0.321 Sum_probs=121.3
Q ss_pred cceeEEeecccchhhHHHHhhhcCCC----ceee-----------cCCcchhhHHHHhh----------------hhhhc
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYP----VTSI-----------HGDRTQKEREEAQQ----------------YTLIS 105 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~----~~~~-----------~~~~~~~~~~~~~~----------------~~~~~ 105 (237)
.++|.+|+|.++++.+..||..--+. .+.+ .....+..++.... +....
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~ 457 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETA 457 (1008)
T ss_pred eeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhh
Confidence 67999999999999999999743221 1111 11112222222210 11223
Q ss_pred cCCceEEEEeecccchHHHHHHHhhC--------------------------------------CCceEEEeCCCCHHHH
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHH--------------------------------------GYPVTSIHGDRTQKER 147 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~~~h~~~~~~~r 147 (237)
..+.++||||++++.|+.++..+... ...++++|+|++.++|
T Consensus 458 ~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 458 PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEER 537 (1008)
T ss_pred hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchH
Confidence 34667999999999998875443210 1358999999999999
Q ss_pred HHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC----CCCHHHHHHhhcccccCC--CCCceEEeecCCCCCCC
Q psy15610 148 EEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL----PSDVEEYVHRIGRTGRMG--NLDFPFSYNQPGYGGSY 220 (237)
Q Consensus 148 ~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~----p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~ 220 (237)
..+...|++|.+.|+++|+.+..|+|+|...+++-+.+ ..+.-.|.||+|||||.| ..|.+++++.+.+...+
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~ 616 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRV 616 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHH
Confidence 99999999999999999999999999999998886432 347889999999999987 56889999998886433
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.47 E-value=2.2e-12 Score=119.70 Aligned_cols=96 Identities=25% Similarity=0.349 Sum_probs=82.8
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCC---CceEEEeCCCCHHHHH----HHHHHh-hcCC---CCEEEEcCccccccCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHG---YPVTSIHGDRTQKERE----EALRRF-RSGE---TPILVATAVAARGLDI 174 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~----~~~~~f-~~g~---~~vlv~T~~~~~Gvdl 174 (237)
.++.+++|||||.+.++.+++.|.+.. ..+..+||.++..+|. ++++.| ++|. ..|||+|+++++|+|+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 457789999999999999999998764 5799999999999994 456677 5565 4699999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHhhcccccCCC
Q psy15610 175 PHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204 (237)
Q Consensus 175 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 204 (237)
+.+++|....| ...++||+||++|.+.
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 57988887778 7899999999999875
No 99
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.46 E-value=6.8e-13 Score=126.89 Aligned_cols=76 Identities=26% Similarity=0.583 Sum_probs=70.7
Q ss_pred CceEEEEeecc---cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEE----cCccccccCCCC-CcE
Q psy15610 108 EALTLVFVETK---KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVA----TAVAARGLDIPH-VKH 179 (237)
Q Consensus 108 ~~~~iIF~~t~---~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gvdl~~-~~~ 179 (237)
+.++||||+++ +.++.++..|.+.|+++..+||+++. ..++.|++|+++|||+ |+++++|+|+|+ +++
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccE
Confidence 36799999999 99999999999999999999999973 6899999999999999 489999999999 899
Q ss_pred EEEecCCC
Q psy15610 180 VINFDLPS 187 (237)
Q Consensus 180 Vi~~~~p~ 187 (237)
||+|++|.
T Consensus 402 vI~~~~P~ 409 (1171)
T TIGR01054 402 AVFLGVPK 409 (1171)
T ss_pred EEEECCCC
Confidence 99999996
No 100
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=9.8e-13 Score=120.48 Aligned_cols=108 Identities=20% Similarity=0.185 Sum_probs=100.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC----------
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV---------- 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~---------- 177 (237)
+.++||||.|.+.++.++.+|.+.|++..++|+.+.+.+++.+.++|+.| .|+|||+++++|+|+.--
T Consensus 444 g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~ 521 (896)
T PRK13104 444 KQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANL 521 (896)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhcc
Confidence 78999999999999999999999999999999999999999999999999 499999999999998632
Q ss_pred ----------------------------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 ----------------------------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 ----------------------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-+||....+.|...-.|-.||+||.|.+|.+-+|++-.+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 522 PADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred ccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 3688888999999999999999999999999999997765
No 101
>KOG0947|consensus
Probab=99.45 E-value=5.3e-13 Score=120.67 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=88.5
Q ss_pred ceEEEEeecccchHHHHHHHhhCC---------------------------------------CceEEEeCCCCHHHHHH
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHG---------------------------------------YPVTSIHGDRTQKEREE 149 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~---------------------------------------~~~~~~h~~~~~~~r~~ 149 (237)
-++||||-+++.|++.+++|.... ..++++|||.-|--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 478999999999999988886431 23899999999999999
Q ss_pred HHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC--------CCCHHHHHHhhcccccCC--CCCceEEeecC
Q psy15610 150 ALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL--------PSDVEEYVHRIGRTGRMG--NLDFPFSYNQP 214 (237)
Q Consensus 150 ~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~--------p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~ 214 (237)
+.-.|+.|-++||++|..+++|+|+|.-++|+..-. -..|.+|.||+|||||-| ..|.+++.+..
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 999999999999999999999999998887775221 237899999999999988 44666655543
No 102
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=120.49 Aligned_cols=165 Identities=22% Similarity=0.291 Sum_probs=128.5
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCce-eecC----------Ccc-----------hhhHHHHhhhhhhccCCceEE
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVT-SIHG----------DRT-----------QKEREEAQQYTLISCDEALTL 112 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~-~~~~----------~~~-----------~~~~~~~~~~~~~~~~~~~~i 112 (237)
...++|..|+|..+..+.++-+....+... ...+ ... +..............++-++|
T Consensus 231 ~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL 310 (851)
T COG1205 231 SPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTL 310 (851)
T ss_pred CCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEE
Confidence 567899999999999998888877777652 1111 011 111122222334455788999
Q ss_pred EEeecccchHHHH----HHHhhCC----CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec
Q psy15610 113 VFVETKKGADQLE----DFLHHHG----YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 113 IF~~t~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
+|+.++..++.+. ..+...+ ..+..+++++.+++|.++.+.|++|++.++++|.+++.|+|+..++.||.++
T Consensus 311 ~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g 390 (851)
T COG1205 311 VFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYG 390 (851)
T ss_pred EEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcC
Confidence 9999999999986 3333334 5789999999999999999999999999999999999999999999999999
Q ss_pred CCC-CHHHHHHhhcccccCCCCCceEEeecCCCCCC
Q psy15610 185 LPS-DVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGS 219 (237)
Q Consensus 185 ~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 219 (237)
.|. +..++.|+.||+||.++.+..+........+.
T Consensus 391 ~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~ 426 (851)
T COG1205 391 YPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDS 426 (851)
T ss_pred CCCchHHHHHHhhhhccCCCCCceEEEEeCCCccch
Confidence 999 89999999999999997777666666444433
No 103
>KOG0384|consensus
Probab=99.42 E-value=3.1e-13 Score=124.74 Aligned_cols=109 Identities=20% Similarity=0.376 Sum_probs=100.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC---CCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG---ETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
+++++|||..-+...+.+++||...++++-.+.|++..+.|.+.++.|.+. .+..|+||.+++.|||+..++.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 479999999999999999999999999999999999999999999999865 46689999999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCc--eEEeecCC
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDF--PFSYNQPG 215 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~--~~~~~~~~ 215 (237)
|..|+|+.-+|..-||+|+||... +|-|++.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999998865 45555543
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2.8e-12 Score=117.29 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=100.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC----------
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV---------- 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~---------- 177 (237)
+.++||||.|...++.++.+|...+++...+|+.++..+++.+.++|+.|. |+|||+++++|.|+.--
T Consensus 449 GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~ 526 (908)
T PRK13107 449 GQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEAL 526 (908)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhh
Confidence 789999999999999999999999999999999999999999999999988 99999999999998632
Q ss_pred ---------------------------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 ---------------------------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 ---------------------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-+||....+.|...-.|-.||+||.|.+|...+|++..+.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 527 ENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 3688899999999999999999999999999999997776
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.37 E-value=3.6e-12 Score=117.00 Aligned_cols=185 Identities=18% Similarity=0.308 Sum_probs=135.6
Q ss_pred EEEeechhHH----HHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh--------cCCCceeec-CCcchhhH
Q psy15610 29 IAWVDEQDKR----SCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH--------HGYPVTSIH-GDRTQKER 95 (237)
Q Consensus 29 ~~~~~~~~k~----~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~--------~~~~~~~~~-~~~~~~~~ 95 (237)
.++++|-+-. +.++.++.... ....+++++|++|+|... +.++++|.. ..|++.... .......+
T Consensus 165 ~vIiDEaHERSl~tDilLgllk~~~-~~rr~DLKiIimSATld~-~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~ 242 (845)
T COG1643 165 VVIIDEAHERSLNTDILLGLLKDLL-ARRRDDLKLIIMSATLDA-ERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYI 242 (845)
T ss_pred EEEEcchhhhhHHHHHHHHHHHHHH-hhcCCCceEEEEecccCH-HHHHHHcCCCCEEEecCCccceEEEecCCCCcchh
Confidence 3456664433 34444443321 223557999999999874 567777763 557776665 33322221
Q ss_pred --HHHhh--hhhhccCCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 96 --EEAQQ--YTLISCDEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 96 --~~~~~--~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
..... ........+.++||.+-....+...+.|++ ....+..+||.++.++..++++.-..|.-+|+++|++
T Consensus 243 l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNI 322 (845)
T COG1643 243 LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccc
Confidence 11111 222345578999999999999999999987 3477899999999999999888888887779999999
Q ss_pred cccccCCCCCcEEEEec------------------CCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 168 AARGLDIPHVKHVINFD------------------LPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 168 ~~~Gvdl~~~~~Vi~~~------------------~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
++.++.+|++.+||..+ .|.|..+..||.|||||.+ +|.||-+|+..+
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 99999999999999733 2558889999999999996 999999998643
No 106
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.37 E-value=1.3e-11 Score=105.97 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=122.5
Q ss_pred ccceeEEeecccchh-hHHH-Hh-----hhcCC--CceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHH
Q psy15610 56 EALTLVFVETKKGAD-QLED-FL-----HHHGY--PVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLED 126 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~-~~~~-~l-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~ 126 (237)
-.++|..|+|+...| +.+. .+ +..|. +...+.+...|.. +....+......+.+++|-+-|.+.++.+.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ievRp~~~Qvd-DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~ 464 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVD-DLLSEIRKRVAKNERVLVTTLTKKMAEDLTE 464 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCceeeecCCCcHH-HHHHHHHHHHhcCCeEEEEeehHHHHHHHHH
Confidence 477899999998854 2221 11 22222 3333333333332 2222233334556899999999999999999
Q ss_pred HHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC-----CHHHHHHhhccccc
Q psy15610 127 FLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS-----DVEEYVHRIGRTGR 201 (237)
Q Consensus 127 ~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~-----s~~~~~Q~~GR~~R 201 (237)
+|.+.|+++..+|++...-+|..+++.++.|.++|||.-+.+-+|+|+|.+..|..+|..+ |-.+++|-+|||.|
T Consensus 465 Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAAR 544 (663)
T COG0556 465 YLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 (663)
T ss_pred HHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999888654 88999999999999
Q ss_pred CCCCCceEEeecC
Q psy15610 202 MGNLDFPFSYNQP 214 (237)
Q Consensus 202 ~g~~~~~~~~~~~ 214 (237)
-- .|.++.|.+.
T Consensus 545 N~-~GkvIlYAD~ 556 (663)
T COG0556 545 NV-NGKVILYADK 556 (663)
T ss_pred cc-CCeEEEEchh
Confidence 73 7888888753
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.35 E-value=5.8e-12 Score=102.79 Aligned_cols=110 Identities=20% Similarity=0.334 Sum_probs=88.9
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEE-
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI- 181 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi- 181 (237)
...+.+++||.++.+..+.+++.|+.. ...+..+|+. ...|....++|++|.+++||+|.++++|+.+|++++.+
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 445789999999999999999999543 3456788874 45688889999999999999999999999999999854
Q ss_pred EecCC-CCHHHHHHhhcccccCCC--CCceEEeecCCC
Q psy15610 182 NFDLP-SDVEEYVHRIGRTGRMGN--LDFPFSYNQPGY 216 (237)
Q Consensus 182 ~~~~p-~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~~ 216 (237)
....+ .+.+.++|.+||+||.-. .|.+++|.....
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 44443 488999999999999542 477777765443
No 108
>KOG0923|consensus
Probab=99.32 E-value=1.2e-11 Score=108.39 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=136.8
Q ss_pred EEEeechhHHHHHHHhhcCchhh--hcccccceeEEeecccchhhHHHHhhh--------cCCCceeecCCcc-hhhHHH
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQE--ELGDEALTLVFVETKKGADQLEDFLHH--------HGYPVTSIHGDRT-QKEREE 97 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~--~~~~~~~~i~f~~t~~~~~~~~~~l~~--------~~~~~~~~~~~~~-~~~~~~ 97 (237)
++++++.+-...-.++|-..... ...++++.++-|+|.+ ++++..+|.. ..+++..+...-. -.+...
T Consensus 381 ViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~D-AekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldA 459 (902)
T KOG0923|consen 381 VIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMD-AEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDA 459 (902)
T ss_pred EEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccC-HHHHHHhccCCcEEeccCcccceeeecccCCchhHHHH
Confidence 67788877665555555444322 2357888999999876 5677777743 3456655544333 333333
Q ss_pred Hhhhhh---hccCCceEEEEeecccchHHHHHHHhhC---------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc
Q psy15610 98 AQQYTL---ISCDEALTLVFVETKKGADQLEDFLHHH---------GYPVTSIHGDRTQKEREEALRRFRSGETPILVAT 165 (237)
Q Consensus 98 ~~~~~~---~~~~~~~~iIF~~t~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 165 (237)
++.-++ ...+.+.+|||..-.+..+.+.+.|..+ .+-+..+|+.+|.+...++++.--+|--+|+++|
T Consensus 460 ai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLAT 539 (902)
T KOG0923|consen 460 AIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLAT 539 (902)
T ss_pred HHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEee
Confidence 333222 2445688999999999888887777643 3457899999999999999999999999999999
Q ss_pred CccccccCCCCCcEEEEec------------------CCCCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 166 AVAARGLDIPHVKHVINFD------------------LPSDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 166 ~~~~~Gvdl~~~~~Vi~~~------------------~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
++++..+.++++.+||.-+ .|.|..+-.||+|||||.| +|+|+-++.
T Consensus 540 NIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 540 NIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred cchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 9999999999999999633 2668888999999999998 999999988
No 109
>KOG0391|consensus
Probab=99.30 E-value=1.1e-11 Score=114.04 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=97.7
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC--CCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE--TPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
+++++||+.-.+..+-++.+|+.+|+-+..+.|...-++|+...++|+.+. +..+++|...+.|||+..+|.||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 689999999999999999999999999999999999999999999999875 456788999999999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCCCce--EEeecC
Q psy15610 186 PSDVEEYVHRIGRTGRMGNLDFP--FSYNQP 214 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~ 214 (237)
+|++..-.|.-.|++|+|+...+ |-|++.
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 99999999999999999987654 444443
No 110
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=1.1e-11 Score=109.76 Aligned_cols=159 Identities=20% Similarity=0.243 Sum_probs=105.0
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh---hhhh-----ccCCceEEEEeecccchHHHH
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ---YTLI-----SCDEALTLVFVETKKGADQLE 125 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~iIF~~t~~~~~~l~ 125 (237)
..+.++|+|++++.....+...-...-..|......+.-........ +... ..+....--+.....-.+.++
T Consensus 196 ~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~ 275 (505)
T TIGR00595 196 AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE 275 (505)
T ss_pred HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHH
Confidence 44568999999988765555444444444444444433221111110 0000 000000101222223457777
Q ss_pred HHHhhC--CCceEEEeCCCCHHHH--HHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC------------CH
Q psy15610 126 DFLHHH--GYPVTSIHGDRTQKER--EEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS------------DV 189 (237)
Q Consensus 126 ~~L~~~--~~~~~~~h~~~~~~~r--~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~------------s~ 189 (237)
+.|.+. +.++..+|++++...+ +.+++.|++|+++|||+|+++++|+|+|++++|+.++.+. ..
T Consensus 276 e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~ 355 (505)
T TIGR00595 276 EELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGF 355 (505)
T ss_pred HHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHH
Confidence 777765 7889999999987766 8899999999999999999999999999999886544431 24
Q ss_pred HHHHHhhcccccCCCCCceEEee
Q psy15610 190 EEYVHRIGRTGRMGNLDFPFSYN 212 (237)
Q Consensus 190 ~~~~Q~~GR~~R~g~~~~~~~~~ 212 (237)
+.|+|++||+||.+..|.+++..
T Consensus 356 ~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 356 QLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HHHHHHHhccCCCCCCCEEEEEe
Confidence 67899999999999888887543
No 111
>KOG0387|consensus
Probab=99.28 E-value=1.1e-11 Score=110.49 Aligned_cols=105 Identities=26% Similarity=0.379 Sum_probs=96.3
Q ss_pred CCceEEEEeecccchHHHHHHHh-hCCCceEEEeCCCCHHHHHHHHHHhhcCCC-C-EEEEcCccccccCCCCCcEEEEe
Q psy15610 107 DEALTLVFVETKKGADQLEDFLH-HHGYPVTSIHGDRTQKEREEALRRFRSGET-P-ILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~-~-vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
.+.+++.|..++...+.++.+|. ..++.+..+.|..+...|..+++.|+++.. . .|++|.+++.|+|+..++.||.|
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf 624 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF 624 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEE
Confidence 36799999999999999999999 589999999999999999999999998763 3 56889999999999999999999
Q ss_pred cCCCCHHHHHHhhcccccCCCCCceEEe
Q psy15610 184 DLPSDVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 184 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
|+.|+|+.-.|..-||-|+|++..+.+|
T Consensus 625 DPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 625 DPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred CCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9999999999999999999998776554
No 112
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.28 E-value=2.4e-11 Score=115.79 Aligned_cols=95 Identities=24% Similarity=0.411 Sum_probs=82.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhC------C---CceEEEeCCCCHHHHHHHHHHhhcCCC-CEEEEcCccccccCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH------G---YPVTSIHGDRTQKEREEALRRFRSGET-PILVATAVAARGLDIPH 176 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~------~---~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gvdl~~ 176 (237)
...++||||.+.++|+.+.+.|.+. + ..+..++|+++ ++..+++.|+++.. .|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3479999999999999998887642 2 24567888875 46789999999886 58999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHhhcccccCC
Q psy15610 177 VKHVINFDLPSDVEEYVHRIGRTGRMG 203 (237)
Q Consensus 177 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 203 (237)
+.+||++.++.|...|.||+||+.|..
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 999999999999999999999999964
No 113
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.26 E-value=2.6e-11 Score=110.98 Aligned_cols=163 Identities=21% Similarity=0.192 Sum_probs=112.8
Q ss_pred cccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh---hhh-----hccCCceEEEEeecccchHHH
Q psy15610 53 LGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ---YTL-----ISCDEALTLVFVETKKGADQL 124 (237)
Q Consensus 53 ~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~iIF~~t~~~~~~l 124 (237)
+..+.++++|++++.....+...-...-..|......+.-........ +.. ..++......|......++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 345668999999988765555555554444444443332111100000 000 001112223466667788889
Q ss_pred HHHHhhC--CCceEEEeCCCC--HHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCC--CC----------
Q psy15610 125 EDFLHHH--GYPVTSIHGDRT--QKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLP--SD---------- 188 (237)
Q Consensus 125 ~~~L~~~--~~~~~~~h~~~~--~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p--~s---------- 188 (237)
++.|.+. +.++..+|++++ ..+++++++.|++|+.+|||+|+++++|+|+|+++.|+.++.+ .+
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 9999875 789999999987 4679999999999999999999999999999999998665543 22
Q ss_pred HHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 189 VEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 189 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
...|+|++||+||.+..|.+++.....
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 367999999999999999888665443
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.23 E-value=1.9e-10 Score=106.34 Aligned_cols=160 Identities=26% Similarity=0.281 Sum_probs=113.4
Q ss_pred cccceeEEeecccc--hhhHHHHhhhcCCCcee-------ecCCcchh----hHHH-----HhhhhhhccCCceEEEEee
Q psy15610 55 DEALTLVFVETKKG--ADQLEDFLHHHGYPVTS-------IHGDRTQK----EREE-----AQQYTLISCDEALTLVFVE 116 (237)
Q Consensus 55 ~~~~~i~f~~t~~~--~~~~~~~l~~~~~~~~~-------~~~~~~~~----~~~~-----~~~~~~~~~~~~~~iIF~~ 116 (237)
.+.++|+.++|.+. .+.+-..+...+..... -.....+. .... ..........+.+++|.||
T Consensus 369 ~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~N 448 (733)
T COG1203 369 AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVN 448 (733)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEe
Confidence 47889999999998 33455555444332221 01111111 1111 1111223456789999999
Q ss_pred cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh----cCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHH
Q psy15610 117 TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR----SGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEY 192 (237)
Q Consensus 117 t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~ 192 (237)
|+..|..+++.|+..+..+..+||.++..+|...++.+. .+...|+|+|.+.+.|+|+. .+++|-=-.| ...+
T Consensus 449 TV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aP--idSL 525 (733)
T COG1203 449 TVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAP--IDSL 525 (733)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCC--HHHH
Confidence 999999999999998767999999999999999988655 45778999999999999985 6666554344 8999
Q ss_pred HHhhcccccCC--CCCceEEeecCCCC
Q psy15610 193 VHRIGRTGRMG--NLDFPFSYNQPGYG 217 (237)
Q Consensus 193 ~Q~~GR~~R~g--~~~~~~~~~~~~~~ 217 (237)
+||+||++|-| ..|..+++......
T Consensus 526 IQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 526 IQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred HHHHHHHhhcccccCCceeEeecccCC
Confidence 99999999999 55666666554444
No 115
>KOG0388|consensus
Probab=99.21 E-value=2.5e-11 Score=107.14 Aligned_cols=104 Identities=20% Similarity=0.374 Sum_probs=96.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC-CCEEEEcCccccccCCCCCcEEEEecCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE-TPILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
++++++|..-.+..+.+++||...++....+.|+....+|..+++.|+... +-.|++|.+++.|+|+..++.||+||..
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSD 1123 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSD 1123 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCC
Confidence 789999999999999999999999999999999999999999999999855 4567899999999999999999999999
Q ss_pred CCHHHHHHhhcccccCCCCCceEEe
Q psy15610 187 SDVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 187 ~s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
|+|..-.|.+.||+|.|+...+-+|
T Consensus 1124 WNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1124 WNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCcchhhHHHHHHHhccCccceeee
Confidence 9999999999999999988665443
No 116
>KOG0390|consensus
Probab=99.15 E-value=2.8e-10 Score=103.10 Aligned_cols=103 Identities=20% Similarity=0.366 Sum_probs=86.4
Q ss_pred EEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCC---EEEEcCccccccCCCCCcEEEEecCCC
Q psy15610 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETP---ILVATAVAARGLDIPHVKHVINFDLPS 187 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gvdl~~~~~Vi~~~~p~ 187 (237)
+.+..|-....+.++....-.|+.+..+||.|+..+|+++++.|++.... .|.+|.+++.|+|+-.++.||.+|++|
T Consensus 598 ~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW 677 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW 677 (776)
T ss_pred EEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC
Confidence 33334444556666666666799999999999999999999999975433 567789999999999999999999999
Q ss_pred CHHHHHHhhcccccCCCCCceEEeec
Q psy15610 188 DVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 188 s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
+|+.-.|++.||-|.||...|++|--
T Consensus 678 NPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 678 NPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred CchhHHHHHHHhccCCCcceEEEEEe
Confidence 99999999999999999988877643
No 117
>KOG0389|consensus
Probab=99.13 E-value=1.9e-10 Score=102.63 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=97.6
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC--CCEEEEcCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE--TPILVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
+.+++||.......+.++-+|..+++.+..+.|++.-.+|+.+++.|.+.+ +-.|++|.+++.|+|+..+++||.+|.
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~ 856 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDI 856 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeec
Confidence 689999999999999999999999999999999999999999999999765 346788999999999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCCCc--eEEeecCC
Q psy15610 186 PSDVEEYVHRIGRTGRMGNLDF--PFSYNQPG 215 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~~~--~~~~~~~~ 215 (237)
..+|-.-.|.-.||+|.|+... ++-+++.+
T Consensus 857 dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 857 DFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred CCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 9999999999999999997654 44555544
No 118
>KOG4150|consensus
Probab=99.12 E-value=1.5e-10 Score=100.37 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=125.4
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecc-cchhhHHHHhhhcCCCceeecCC--------------cchhhH----
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETK-KGADQLEDFLHHHGYPVTSIHGD--------------RTQKER---- 95 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~-~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~---- 95 (237)
...+..|.+|+....++ -+.+++-=+++- ..+....+.++-.......+.+. ..+..+
T Consensus 433 ~~~~R~L~~L~~~F~~~---~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEAS---INMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHhh---cCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 35677788887765433 244444444443 33555555554443333222221 122222
Q ss_pred ---HHHhhhhhhccCCceEEEEeecccchHHHHHHHhh----CC----CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEE
Q psy15610 96 ---EEAQQYTLISCDEALTLVFVETKKGADQLEDFLHH----HG----YPVTSIHGDRTQKEREEALRRFRSGETPILVA 164 (237)
Q Consensus 96 ---~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 164 (237)
+....+.-....+-++|-||++++.|+.+-...++ .+ -.+..|.||...++|.++.+.+=-|.+.-+|+
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 11212333345678999999999999987444332 22 24678899999999999999988899999999
Q ss_pred cCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 165 TAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 165 T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
|.+++.|+|+...+.|+..+.|.|...+.|+.|||||-..++..++.++...
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccc
Confidence 9999999999999999999999999999999999999988877766665443
No 119
>KOG0924|consensus
Probab=99.12 E-value=2.2e-10 Score=100.96 Aligned_cols=203 Identities=20% Similarity=0.287 Sum_probs=138.2
Q ss_pred HHhhcceeEEEeeccCCCCCceeE-EEEeechh----HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhh--
Q psy15610 5 EFLYRYIFLAIGRVGSTSENITQR-IAWVDEQD----KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLH-- 77 (237)
Q Consensus 5 ~~l~~~~~i~~~~~~~~~~~i~~~-~~~~~~~~----k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~-- 77 (237)
+||.|.+.+ +|......+.++ +++.++.+ -.+.|+.+|+...+. ..+++.|+.++|.. +++++.+|+
T Consensus 449 kymTDGiLL---rEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar--RrdlKliVtSATm~-a~kf~nfFgn~ 522 (1042)
T KOG0924|consen 449 KYMTDGILL---RESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR--RRDLKLIVTSATMD-AQKFSNFFGNC 522 (1042)
T ss_pred EEeccchHH---HHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh--hccceEEEeecccc-HHHHHHHhCCC
Confidence 345555544 344444555555 33444433 235555555544322 34788899998875 678888887
Q ss_pred ------hcCCCceeecCCc-chhhHHHHhh-hhh--hccCCceEEEEeecccchHHH----HHHHhhC------CCceEE
Q psy15610 78 ------HHGYPVTSIHGDR-TQKEREEAQQ-YTL--ISCDEALTLVFVETKKGADQL----EDFLHHH------GYPVTS 137 (237)
Q Consensus 78 ------~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~iIF~~t~~~~~~l----~~~L~~~------~~~~~~ 137 (237)
...|++..++... .+.+...+.. ..- .....+..+||..-.+..+-. .+.|.+. ++.+..
T Consensus 523 p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlp 602 (1042)
T KOG0924|consen 523 PQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLP 602 (1042)
T ss_pred ceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEe
Confidence 3445666555433 2333332222 111 233457799999888765544 4444332 567889
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC------------------CCCHHHHHHhhccc
Q psy15610 138 IHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL------------------PSDVEEYVHRIGRT 199 (237)
Q Consensus 138 ~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~------------------p~s~~~~~Q~~GR~ 199 (237)
+++-++..-..+++..-..|.-+++|+|.+++..+.+|.+.+||..+. |.|...--||+|||
T Consensus 603 iYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRA 682 (1042)
T KOG0924|consen 603 IYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRA 682 (1042)
T ss_pred ehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhcccc
Confidence 999999999998888888888899999999999999999999997442 66778888999999
Q ss_pred ccCCCCCceEEeecC
Q psy15610 200 GRMGNLDFPFSYNQP 214 (237)
Q Consensus 200 ~R~g~~~~~~~~~~~ 214 (237)
||.| +|.||-+|..
T Consensus 683 GRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 683 GRTG-PGTCYRLYTE 696 (1042)
T ss_pred CCCC-Ccceeeehhh
Confidence 9997 9999998875
No 120
>KOG0953|consensus
Probab=99.11 E-value=7.4e-10 Score=95.67 Aligned_cols=144 Identities=21% Similarity=0.263 Sum_probs=101.5
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhh-HHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCc-eE
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE-REEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYP-VT 136 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~ 136 (237)
.|..|..+..+.-+...+.-.|-.+...+=+..... ......-.+...+.+.+ |.|-+++..-.+...+.+.+.. +.
T Consensus 307 EiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 307 EIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred hhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceE
Confidence 467787777777776666655554433322111111 11111111222233434 5677888888888888877654 99
Q ss_pred EEeCCCCHHHHHHHHHHhhc--CCCCEEEEcCccccccCCCCCcEEEEecC---------CCCHHHHHHhhcccccCCC
Q psy15610 137 SIHGDRTQKEREEALRRFRS--GETPILVATAVAARGLDIPHVKHVINFDL---------PSDVEEYVHRIGRTGRMGN 204 (237)
Q Consensus 137 ~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~---------p~s~~~~~Q~~GR~~R~g~ 204 (237)
+++|++||+.|.+-...|++ ++.+|||+||+.++|+|+ +++.||+++. |.+..+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 99999999999999999997 789999999999999998 5677777765 3368899999999999874
No 121
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.10 E-value=1.7e-10 Score=107.29 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=102.6
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccch-HHHHHHHhhCCC
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGA-DQLEDFLHHHGY 133 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~-~~l~~~L~~~~~ 133 (237)
+..++|.|+-++..|++.+..+...+.....-...- .+..+ ...+.. +..+.... -.+..+..-+..
T Consensus 378 ~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~---i~~ii-~~~i~~--------L~~ed~~lp~~~~~~~~~L~R 445 (1041)
T COG4581 378 NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA---IREII-DHAIGD--------LAEEDRELPLQILEISALLLR 445 (1041)
T ss_pred cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH---HHHHH-HHHHhh--------cChhhhcCcccHHHHHHHHhh
Confidence 357899999999999999999987665443322110 11111 100111 11122212 122222222234
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE----ec----CCCCHHHHHHhhcccccCCCC
Q psy15610 134 PVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN----FD----LPSDVEEYVHRIGRTGRMGNL 205 (237)
Q Consensus 134 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~----~~----~p~s~~~~~Q~~GR~~R~g~~ 205 (237)
.++++|+||-|..++.+...|..|..+|+++|..++.|+|+|.-++|+- ++ ...++.+|.|+.|||||-|.+
T Consensus 446 GiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD 525 (1041)
T COG4581 446 GIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD 525 (1041)
T ss_pred hhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhcccccc
Confidence 4569999999999999999999999999999999999999998777663 22 234799999999999998855
Q ss_pred --CceEEeecCCCC
Q psy15610 206 --DFPFSYNQPGYG 217 (237)
Q Consensus 206 --~~~~~~~~~~~~ 217 (237)
|.+++...+...
T Consensus 526 ~~G~vI~~~~~~~~ 539 (1041)
T COG4581 526 VLGTVIVIEPPFES 539 (1041)
T ss_pred ccceEEEecCCCCC
Confidence 666666554444
No 122
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.97 E-value=3.8e-09 Score=99.77 Aligned_cols=104 Identities=26% Similarity=0.360 Sum_probs=95.3
Q ss_pred eEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEcCccccccCCCCCcEEEEecCCC
Q psy15610 110 LTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG--ETPILVATAVAARGLDIPHVKHVINFDLPS 187 (237)
Q Consensus 110 ~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~ 187 (237)
+++||++.....+.+..++...++.+..++|+++..+|...++.|.++ ....++++.+++.|+|+..++.||.+|+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999998999999999999999999999986 344667789999999999999999999999
Q ss_pred CHHHHHHhhcccccCCCCCceEEeec
Q psy15610 188 DVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 188 s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
++....|...|++|.|+...+.++-.
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 99999999999999998877655543
No 123
>KOG0920|consensus
Probab=98.91 E-value=2.1e-08 Score=92.70 Aligned_cols=190 Identities=23% Similarity=0.308 Sum_probs=134.7
Q ss_pred cCCCCCceeEEE-Eeechh-----HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcch
Q psy15610 19 GSTSENITQRIA-WVDEQD-----KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQ 92 (237)
Q Consensus 19 ~~~~~~i~~~~~-~~~~~~-----k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (237)
.....++.|.++ .+.+++ -+-++..+|... +++++|++|+|.. ++.+..+++ +.++..+.+..-.
T Consensus 282 ~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~------p~LkvILMSAT~d-ae~fs~YF~--~~pvi~i~grtfp 352 (924)
T KOG0920|consen 282 DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN------PDLKVILMSATLD-AELFSDYFG--GCPVITIPGRTFP 352 (924)
T ss_pred CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC------CCceEEEeeeecc-hHHHHHHhC--CCceEeecCCCcc
Confidence 345556666643 344433 334444444443 7889999999998 888888886 3232222221100
Q ss_pred ---------------------------------------------hhHHHHhhhhhhccCCceEEEEeecccchHHHHHH
Q psy15610 93 ---------------------------------------------KEREEAQQYTLISCDEALTLVFVETKKGADQLEDF 127 (237)
Q Consensus 93 ---------------------------------------------~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~ 127 (237)
................+.+|||.+....+..+...
T Consensus 353 V~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~ 432 (924)
T KOG0920|consen 353 VKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKEL 432 (924)
T ss_pred hHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHH
Confidence 01111111222334567899999999999999888
Q ss_pred HhhC-------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE--------ecCC------
Q psy15610 128 LHHH-------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN--------FDLP------ 186 (237)
Q Consensus 128 L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~--------~~~p------ 186 (237)
|... ..-+..+|+.|+.++...+...--.|.-+|+++|.+++..+.++++-+||. ||+-
T Consensus 433 L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l 512 (924)
T KOG0920|consen 433 LEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCL 512 (924)
T ss_pred hhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchh
Confidence 8642 256788999999999999999999999999999999999999999999997 3331
Q ss_pred ----CCHHHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 187 ----SDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 187 ----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
.|...-.||.|||||. .+|.||-+++....+
T Consensus 513 ~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 513 LLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred heeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 2666778999999998 599999998866543
No 124
>KOG1000|consensus
Probab=98.90 E-value=9.6e-09 Score=87.88 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=96.6
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC-CCCEE-EEcCccccccCCCCCcEEE
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG-ETPIL-VATAVAARGLDIPHVKHVI 181 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~~~Gvdl~~~~~Vi 181 (237)
...++.+.+|||.-....+.+..++.++++....+.|+.++.+|....+.|+.. +..|. ++-.+++.|+++..+++|+
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEE
Confidence 356778999999999999999999999999999999999999999999999965 45554 4558899999999999999
Q ss_pred EecCCCCHHHHHHhhcccccCCCCCceEEee
Q psy15610 182 NFDLPSDVEEYVHRIGRTGRMGNLDFPFSYN 212 (237)
Q Consensus 182 ~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~ 212 (237)
+...+|+|..++|.-.|++|.|++..+.+.+
T Consensus 568 FaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 568 FAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEecCCCceEEechhhhhhccccceeeEEE
Confidence 9999999999999999999999886644433
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=1.4e-08 Score=92.81 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=90.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC-CCEEEEcCccccccCCCCCc--------
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE-TPILVATAVAARGLDIPHVK-------- 178 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gvdl~~~~-------- 178 (237)
++++||.|.|.+..+.++.+|.+.|++..++++... +++..+-. ++|. -.|.|+|..++||.|+.--.
T Consensus 426 gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGL 502 (925)
T PRK12903 426 GQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGL 502 (925)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCc
Confidence 689999999999999999999999999999988643 33333322 4564 45889999999999996433
Q ss_pred EEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 179 HVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 179 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
+||....|.|...--|..||+||.|.+|.+.+|++-.+.
T Consensus 503 hVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 503 YVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred EEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 899999999999999999999999999999999997765
No 126
>KOG0386|consensus
Probab=98.85 E-value=4.8e-09 Score=95.99 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=98.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCccccccCCCCCcEEEEec
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET---PILVATAVAARGLDIPHVKHVINFD 184 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~Gvdl~~~~~Vi~~~ 184 (237)
+++++.|+.-..-...++++|.-.++.+..+.|....++|-..++.|..... ..|.+|.+.+.|+|++.++.||.||
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifd 805 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFD 805 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEec
Confidence 7899999999999999999999999999999999999999999999997653 4778999999999999999999999
Q ss_pred CCCCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 185 LPSDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 185 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
..|+|....|+-.||+|.|+...+-++..
T Consensus 806 sdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 806 SDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred CCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 99999999999999999998877766543
No 127
>KOG0949|consensus
Probab=98.83 E-value=6.6e-09 Score=94.96 Aligned_cols=79 Identities=27% Similarity=0.296 Sum_probs=68.0
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecC-CCCHHHHHHhhcccccCCC--CCceEE
Q psy15610 134 PVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDL-PSDVEEYVHRIGRTGRMGN--LDFPFS 210 (237)
Q Consensus 134 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~-p~s~~~~~Q~~GR~~R~g~--~~~~~~ 210 (237)
.+.++|++++...|..++-.|+.|...||++|..++.|+|+|.-++|+.-|. -.++-.|.||+|||||-|- .|.+++
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 5789999999999999999999999999999999999999998877776654 3478999999999999883 355554
Q ss_pred ee
Q psy15610 211 YN 212 (237)
Q Consensus 211 ~~ 212 (237)
+-
T Consensus 1044 mg 1045 (1330)
T KOG0949|consen 1044 MG 1045 (1330)
T ss_pred Ee
Confidence 43
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=5e-08 Score=88.06 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC---------
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV--------- 177 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~--------- 177 (237)
.+.++||.|.+....+.++..|.+.+++..++++.-...+-+.+.++-+ .-.|.|+|..+++|.|+.--
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~ 503 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDR 503 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHH
Confidence 3789999999999999999999999999999998755444333333322 23588999999999998632
Q ss_pred ------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 ------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 ------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-+||....|.|...-.|-.||+||.|.+|.+.+|++-.+.
T Consensus 504 V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 504 VAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred HHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 3799999999999999999999999999999999997765
No 129
>KOG1015|consensus
Probab=98.73 E-value=3.8e-08 Score=89.91 Aligned_cols=107 Identities=23% Similarity=0.302 Sum_probs=93.9
Q ss_pred CceEEEEeecccchHHHHHHHhhC----------------------CCceEEEeCCCCHHHHHHHHHHhhcCC---C-CE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH----------------------GYPVTSIHGDRTQKEREEALRRFRSGE---T-PI 161 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~---~-~v 161 (237)
+.+.|||..+....+.|..+|... |.....+.|+....+|.++...|++.. . -.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 678999999999999999888531 456889999999999999999998753 2 27
Q ss_pred EEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecC
Q psy15610 162 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 162 lv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
||+|.+++.|+|+-.++.||.||..|+|+.-.|.+=|+-|+|+..-||+|=.-
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 89999999999999999999999999999999999999999998888776443
No 130
>KOG1123|consensus
Probab=98.69 E-value=8.3e-08 Score=82.46 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=85.7
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC-CCCEEEEcCccccccCCCCCcEEEEecCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG-ETPILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
+.++|||..+.-.....+-.| + -.+++|..++.+|.++++.|+.. .++.++.+.++...+|+|.++++|+.+..
T Consensus 543 gDKiIVFsDnvfALk~YAikl---~--KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH 617 (776)
T KOG1123|consen 543 GDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 617 (776)
T ss_pred CCeEEEEeccHHHHHHHHHHc---C--CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccc
Confidence 789999999877666655544 2 34789999999999999999955 68899999999999999999999998876
Q ss_pred C-CHHHHHHhhcccccCC---CCCceEEee---cCCCCCCCCCCC
Q psy15610 187 S-DVEEYVHRIGRTGRMG---NLDFPFSYN---QPGYGGSYGGSS 224 (237)
Q Consensus 187 ~-s~~~~~Q~~GR~~R~g---~~~~~~~~~---~~~~~~~~~~~~ 224 (237)
. |..+-.||.||..|.- .++.-.+|+ +....+.|-+.+
T Consensus 618 ~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 618 GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhh
Confidence 4 7888899999988842 233334444 444444444433
No 131
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.64 E-value=1.5e-07 Score=87.60 Aligned_cols=115 Identities=22% Similarity=0.165 Sum_probs=94.6
Q ss_pred hhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCC----
Q psy15610 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPH---- 176 (237)
Q Consensus 101 ~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~---- 176 (237)
..-....++++||-|.|.+..+.++++|...|++..++++.....+-+.+.++-+. -.|-|+|..++||.|+.-
T Consensus 621 i~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V 698 (1112)
T PRK12901 621 ITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEV 698 (1112)
T ss_pred HHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhh
Confidence 44446789999999999999999999999999998888886554444444443332 358889999999999862
Q ss_pred ----CcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 177 ----VKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 177 ----~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
=-+||....+.|...-.|-.||+||.|.+|.+.+|++..+.
T Consensus 699 ~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 699 KAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred HHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 24789999999999999999999999999999999997765
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=2.2e-07 Score=85.84 Aligned_cols=108 Identities=23% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC-CCEEEEcCccccccCCCC---------
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE-TPILVATAVAARGLDIPH--------- 176 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gvdl~~--------- 176 (237)
.+.++||-|.|.+..+.++.+|...+++..+++......+-+.+. +.|. -.|.|+|..++||.|+.-
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~ 524 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVA 524 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHH
Confidence 378999999999999999999999999988888765444333333 3453 458899999999999841
Q ss_pred ----------------------------CcEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 177 ----------------------------VKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 177 ----------------------------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
=-+||....+.|...-.|-.||+||.|.+|.+-+|++..+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 525 ALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 13788899999999999999999999999999999998665
No 133
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=3.4e-07 Score=84.85 Aligned_cols=114 Identities=20% Similarity=0.161 Sum_probs=93.4
Q ss_pred hhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC-CCEEEEcCccccccCCCCC--
Q psy15610 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE-TPILVATAVAARGLDIPHV-- 177 (237)
Q Consensus 101 ~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gvdl~~~-- 177 (237)
.......+.+++|-|.+....+.++..|...|++..+++..-...+-+.+.+ +|. -.|.|+|..+++|.|+.--
T Consensus 561 i~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~ 637 (970)
T PRK12899 561 IASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEE 637 (970)
T ss_pred HHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccCCcccccCch
Confidence 3334567899999999999999999999999999999988644443333333 343 4588999999999998532
Q ss_pred ------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 ------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 ------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-+||....|.|...-.|-.||+||.|.+|.+.+|++..+.
T Consensus 638 v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 638 AVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred HHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 3688899999999999999999999999999999997765
No 134
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.59 E-value=2.3e-07 Score=84.14 Aligned_cols=93 Identities=19% Similarity=0.353 Sum_probs=75.1
Q ss_pred CceEEEEeecccchHHHHHHHhhC-----CCceEEEeCCCCHHHHHHHHHHhhc--CCCCEEEEcCccccccCCCCCcEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-----GYPVTSIHGDRTQKEREEALRRFRS--GETPILVATAVAARGLDIPHVKHV 180 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gvdl~~~~~V 180 (237)
..++||||.+..+|+.|...|.+. +--+..+.|+- ++-.+.++.|.. .-..|.++.+.+..|+|+|.|.++
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 479999999999999999998764 33355666643 334445566654 346788999999999999999999
Q ss_pred EEecCCCCHHHHHHhhcccccC
Q psy15610 181 INFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 181 i~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
+++..-.|...|.||+||+-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999989999999999999994
No 135
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.57 E-value=1.7e-07 Score=85.55 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=108.6
Q ss_pred cccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhh-----------hccCCceEEEEeecccch
Q psy15610 53 LGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTL-----------ISCDEALTLVFVETKKGA 121 (237)
Q Consensus 53 ~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~iIF~~t~~~~ 121 (237)
+..+.++|+|.+.+.....+...=...-..|......+.-........+-. -.+. ...|+++.. -.
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cg-s~~L~~~G~--Gt 493 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG-SEHLRAVGP--GT 493 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCC-CCeeEEecc--cH
Confidence 356778999999998876665555555555655555554433332222111 1112 224555443 45
Q ss_pred HHHHHHHhhC--CCceEEEeCCCCHHH--HHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCCC----------
Q psy15610 122 DQLEDFLHHH--GYPVTSIHGDRTQKE--REEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLPS---------- 187 (237)
Q Consensus 122 ~~l~~~L~~~--~~~~~~~h~~~~~~~--r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~---------- 187 (237)
+.+++.|... +.++..+.++.+... -+..+..|.+|+.+|||.|.++..|.|+|+++.|...+.+.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 6777777654 778888888766533 56779999999999999999999999999999877655432
Q ss_pred --CHHHHHHhhcccccCCCCCceEEeec
Q psy15610 188 --DVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 188 --s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
....++|-+|||||.+.+|.+++=..
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 45677899999999988887765443
No 136
>KOG1002|consensus
Probab=98.48 E-value=4.8e-07 Score=77.80 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=94.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC-CCE-EEEcCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE-TPI-LVATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~v-lv~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
..++|||.......+.+.=.|.+.|+.+..+.|+|++..|...++.|.+.. ..| |++-.+++..+|+..+..|+..|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 468999999999999999999999999999999999999999999999875 444 455699999999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCC--CceEEeecC
Q psy15610 186 PSDVEEYVHRIGRTGRMGNL--DFPFSYNQP 214 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~ 214 (237)
-|++..-.|...|.+|+|+. -.++.|+-.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 99999999999999999964 455666543
No 137
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.42 E-value=2.2e-06 Score=81.07 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=81.5
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcE--E
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKH--V 180 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~--V 180 (237)
....++++||+++.+.++.++..|... .....++..+.. ..|.++++.|+++...||++|+.+.+|+|+|+... |
T Consensus 671 ~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 671 AITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 345678999999999999999998752 112334444433 57889999999999999999999999999998764 5
Q ss_pred EEecCCC----C--------------------------HHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 181 INFDLPS----D--------------------------VEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 181 i~~~~p~----s--------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
|....|. + ...+.|.+||.-|..+...++++++..
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 5555442 1 134578999999988776666666654
No 138
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.35 E-value=5.9e-06 Score=76.31 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=88.6
Q ss_pred hhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC--HHHHHHHHHHhhcCC-CCEEEEcCccccccCCCCC
Q psy15610 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT--QKEREEALRRFRSGE-TPILVATAVAARGLDIPHV 177 (237)
Q Consensus 101 ~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~--~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gvdl~~~ 177 (237)
.......+.+++|-|.|.+..+.++..|...|++..++++.-. ..|-+.+.+ +|. -.|.|+|..++||.|+.--
T Consensus 417 i~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~Lg 493 (870)
T CHL00122 417 CLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDIILG 493 (870)
T ss_pred HHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCeecC
Confidence 3344667899999999999999999999999999999998642 333333333 344 4588999999999876321
Q ss_pred --------------------------------------------------------------------------------
Q psy15610 178 -------------------------------------------------------------------------------- 177 (237)
Q Consensus 178 -------------------------------------------------------------------------------- 177 (237)
T Consensus 494 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (870)
T CHL00122 494 GNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLKNDLKFLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNEL 573 (870)
T ss_pred CchhHHHHHHHhhhhcccccccccccccccchhhhhhcccchhhhcccccccccccccccccccccchhhhhhhhHHHHH
Confidence
Q ss_pred --------------------cEEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 178 --------------------KHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 178 --------------------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-+||......|...--|-.||+||.|.+|..-+|++-.+.
T Consensus 574 ~~~~~~~~~~e~e~V~~~GGL~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 574 LEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred HHHHHHHhhhhHHHHHHcCCCEEEecCcCchHHHHHHHhccccCCCCCCcceEEEEeccH
Confidence 1355556666777888999999999999999999997765
No 139
>KOG4439|consensus
Probab=98.30 E-value=4.9e-06 Score=74.35 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=94.6
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc--CCCCEEE-EcCccccccCCCCCcEE
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS--GETPILV-ATAVAARGLDIPHVKHV 180 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv-~T~~~~~Gvdl~~~~~V 180 (237)
..+...+++|...-......+...|.+.|.....+||.....+|+.+++.|.. |..+|++ +-.+.+.|+|+...+++
T Consensus 742 ~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 742 LTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred hhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 45667788888888888888999999999999999999999999999999974 4456654 45889999999999999
Q ss_pred EEecCCCCHHHHHHhhcccccCCCCCceEEe
Q psy15610 181 INFDLPSDVEEYVHRIGRTGRMGNLDFPFSY 211 (237)
Q Consensus 181 i~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 211 (237)
|..|+.|+|.---|.+.|..|+|+...+++.
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999999999877654
No 140
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.27 E-value=2.6e-06 Score=78.96 Aligned_cols=75 Identities=36% Similarity=0.710 Sum_probs=67.1
Q ss_pred CceEEEEeec---ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc----CccccccCCCC-CcE
Q psy15610 108 EALTLVFVET---KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVAT----AVAARGLDIPH-VKH 179 (237)
Q Consensus 108 ~~~~iIF~~t---~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T----~~~~~Gvdl~~-~~~ 179 (237)
+.-.|||+++ ++.+++++++|...|+++..+|++ .+..++.|..|++++||.. ..+.+|+|+|. +.+
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirY 409 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRY 409 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeE
Confidence 5679999999 889999999999999999999984 3678899999999999875 57999999998 678
Q ss_pred EEEecCCC
Q psy15610 180 VINFDLPS 187 (237)
Q Consensus 180 Vi~~~~p~ 187 (237)
+|+++.|.
T Consensus 410 aIF~GvPk 417 (1187)
T COG1110 410 AVFYGVPK 417 (1187)
T ss_pred EEEecCCc
Confidence 99999984
No 141
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.27 E-value=6.2e-06 Score=75.91 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=73.4
Q ss_pred CceEEEEeecccchHHHHHHHhhC-----CCceEEEeCCCCHH---------------------HHHHHHHHhhc-CCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-----GYPVTSIHGDRTQK---------------------EREEALRRFRS-GETP 160 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~---------------------~r~~~~~~f~~-g~~~ 160 (237)
..+++|||.++.+|..+.+.|.+. +....+++++.+.+ ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999998887654 23455666554332 12467888876 5789
Q ss_pred EEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 161 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 161 vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
+||+++.+..|+|.|.+++++...+-.+. .++|++||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999988877665554 489999999994
No 142
>KOG0925|consensus
Probab=98.25 E-value=1.2e-05 Score=69.17 Aligned_cols=202 Identities=17% Similarity=0.207 Sum_probs=124.2
Q ss_pred HHhhcceeEEEeeccCCCCCceeE-EEEeechhHHHHHHHhhcCchhhh--cccccceeEEeecccchhhHHHHhhhc--
Q psy15610 5 EFLYRYIFLAIGRVGSTSENITQR-IAWVDEQDKRSCLLDLLSSPSQEE--LGDEALTLVFVETKKGADQLEDFLHHH-- 79 (237)
Q Consensus 5 ~~l~~~~~i~~~~~~~~~~~i~~~-~~~~~~~~k~~~l~~ll~~~~~~~--~~~~~~~i~f~~t~~~~~~~~~~l~~~-- 79 (237)
+|+.|.+.+ +|.-+..-+..+ +++.++.+.+....++|.-.-... ..+++++|++++|.. ++++..++...
T Consensus 140 ky~tDgmLl---rEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~-a~Kfq~yf~n~Pl 215 (699)
T KOG0925|consen 140 KYCTDGMLL---REAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLD-AEKFQRYFGNAPL 215 (699)
T ss_pred HHhcchHHH---HHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccc-hHHHHHHhCCCCe
Confidence 455555544 234334444444 456666655544444444332222 246889999998865 45666666443
Q ss_pred -----CCCceeecCC-cchhhHHHHhhhhhh---ccCCceEEEEeecccchHHHHHHHh----hC-----CCceEEEeCC
Q psy15610 80 -----GYPVTSIHGD-RTQKEREEAQQYTLI---SCDEALTLVFVETKKGADQLEDFLH----HH-----GYPVTSIHGD 141 (237)
Q Consensus 80 -----~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~iIF~~t~~~~~~l~~~L~----~~-----~~~~~~~h~~ 141 (237)
.+++..+... .....-+.++..++. ....+.+++|....+..+..-+.+. .. ...+..+|
T Consensus 216 l~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy-- 293 (699)
T KOG0925|consen 216 LAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY-- 293 (699)
T ss_pred eecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC--
Confidence 2345444433 333333333332222 3347789999999886655544443 22 24566677
Q ss_pred CCHHHHHHHHHHhhc---C--CCCEEEEcCccccccCCCCCcEEEEec------------------CCCCHHHHHHhhcc
Q psy15610 142 RTQKEREEALRRFRS---G--ETPILVATAVAARGLDIPHVKHVINFD------------------LPSDVEEYVHRIGR 198 (237)
Q Consensus 142 ~~~~~r~~~~~~f~~---g--~~~vlv~T~~~~~Gvdl~~~~~Vi~~~------------------~p~s~~~~~Q~~GR 198 (237)
|.+..++++.-.. | .-+|+|+|.+++..+.++.+.+||.-+ .|.|..+-.||.||
T Consensus 294 --P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gr 371 (699)
T KOG0925|consen 294 --PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGR 371 (699)
T ss_pred --chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhh
Confidence 5555555444332 2 246999999999999999999999633 36788889999999
Q ss_pred cccCCCCCceEEeecCC
Q psy15610 199 TGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 199 ~~R~g~~~~~~~~~~~~ 215 (237)
+||. .+|+|+-++...
T Consensus 372 agrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 372 AGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ccCC-CCCceEEeecHH
Confidence 9998 589999888743
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.14 E-value=2.9e-05 Score=71.92 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=51.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC--HHHHHHHHHHhhcCC-CCEEEEcCccccccCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT--QKEREEALRRFRSGE-TPILVATAVAARGLDIP 175 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~--~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gvdl~ 175 (237)
+.+++|-|.|.+..+.++..|...|++..+++.... ..+-+.+.+ +|. -.|-|+|..++||.|+.
T Consensus 439 GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 439 GRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 789999999999999999999999999999998633 233333333 454 35889999999997763
No 144
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.12 E-value=1e-05 Score=61.56 Aligned_cols=105 Identities=26% Similarity=0.313 Sum_probs=72.6
Q ss_pred CceEEEEeecccchHHHHHHHhhCCC--ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC--ccccccCCCC--CcEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGY--PVTSIHGDRTQKEREEALRRFRSGETPILVATA--VAARGLDIPH--VKHVI 181 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gvdl~~--~~~Vi 181 (237)
++.++||+++...++.+.+.+..... .+.++.- ...++...++.|+++.-.||+++. .+.+|+|+|+ +..||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 68899999999999999999976532 2233333 355678889999999989999998 9999999996 66788
Q ss_pred EecCCC----CH--------------------------HHHHHhhcccccCCCCCceEEeecC
Q psy15610 182 NFDLPS----DV--------------------------EEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 182 ~~~~p~----s~--------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
....|. ++ ..+.|.+||+-|..++-.++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 877663 21 1335889999998877666666654
No 145
>KOG1016|consensus
Probab=98.10 E-value=1.6e-05 Score=71.93 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=91.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCC------------------CceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHG------------------YPVTSIHGDRTQKEREEALRRFRSGET---PILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~------------------~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~ 166 (237)
+.++|||..+....+.+++.|.+.. .....+.|..+..+|++++.+|.+..- -++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 6789999999999999999997652 235577889999999999999987542 3678899
Q ss_pred ccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCCCCceEEee
Q psy15610 167 VAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYN 212 (237)
Q Consensus 167 ~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~ 212 (237)
+.+.|+|+-.++.++.|+..|++---.|.+-|+.|.|+..-|++|-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999999988764
No 146
>KOG0926|consensus
Probab=98.03 E-value=2.3e-06 Score=77.43 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=67.6
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEec--------C---------CC-CHHHHHHhh
Q psy15610 135 VTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFD--------L---------PS-DVEEYVHRI 196 (237)
Q Consensus 135 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~--------~---------p~-s~~~~~Q~~ 196 (237)
+..+++-++.+...+++..-..|.--++|+|.+++..+.+|++.+||..+ . .| |..+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 67778889999999998888888888999999999999999999999733 2 22 555667999
Q ss_pred cccccCCCCCceEEeecCC
Q psy15610 197 GRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 197 GR~~R~g~~~~~~~~~~~~ 215 (237)
|||||.| +|.||-+|+..
T Consensus 687 GRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCCC-CCceeehhhhH
Confidence 9999998 99999988753
No 147
>KOG0951|consensus
Probab=97.90 E-value=2.4e-05 Score=74.01 Aligned_cols=169 Identities=13% Similarity=0.062 Sum_probs=113.8
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh---------------------hhhhccCCceEE
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ---------------------YTLISCDEALTL 112 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~i 112 (237)
.+.-+++..+.+..++.++ ++.....++.+.+..+..+-..-++ ...-.....+++
T Consensus 1287 ~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred HhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 3445566666666666665 3333344455555555544322222 111234567899
Q ss_pred EEeecccchHHHHHHHhhC----------------------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcccc
Q psy15610 113 VFVETKKGADQLEDFLHHH----------------------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAAR 170 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 170 (237)
||+++++++..++.-+... ..+..+-|-+++..+...+...|..|.++|+|.+.. ++
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 9999999998874433210 123333389999999999999999999999999877 88
Q ss_pred ccCCCCCcEEEE----ecC------CCCHHHHHHhhcccccCCCCCceEEeecCCCCCCCCCCCCCCCC
Q psy15610 171 GLDIPHVKHVIN----FDL------PSDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYGGSSSQNSN 229 (237)
Q Consensus 171 Gvdl~~~~~Vi~----~~~------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (237)
|+....--+|+. ||. +.....++||+|+|+| .|.|++++...++.+|+.-...-.+
T Consensus 1443 ~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1443 GTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred cccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 887654444442 332 3468999999999998 5689999999999988875554333
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=97.86 E-value=6.7e-06 Score=75.31 Aligned_cols=109 Identities=21% Similarity=0.344 Sum_probs=81.1
Q ss_pred ceEEEEeecccchHHHHHHHh---------------hCCCceEEEeCCCCHHHHHHHHHH---hhcCCCCEEEEcCcccc
Q psy15610 109 ALTLVFVETKKGADQLEDFLH---------------HHGYPVTSIHGDRTQKEREEALRR---FRSGETPILVATAVAAR 170 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~---------------~~~~~~~~~h~~~~~~~r~~~~~~---f~~g~~~vlv~T~~~~~ 170 (237)
.++|-||.+.+....+++.+. .+.+.+..+.|.|+..+|++.+.. |...+.+||---.++.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 566777777776665544432 124456677799999999776654 45566777777789999
Q ss_pred ccCCCCCcEEEEecCCCCHHHHHHhhcccccCC-CCCceEEeecCCCC
Q psy15610 171 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG-NLDFPFSYNQPGYG 217 (237)
Q Consensus 171 Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g-~~~~~~~~~~~~~~ 217 (237)
|+|+|..+-||++++-.+....+|.+||+.|-. ++..+|++.+-.-.
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalp 588 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALP 588 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccC
Confidence 999999999999999999999999999999954 34456666654333
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00015 Score=66.98 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=103.1
Q ss_pred cceeEEeecccchhhHHHHhhhcCCCcee--e--cC--------------Ccch----hhHHHHhh--hhhhccCCceEE
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYPVTS--I--HG--------------DRTQ----KEREEAQQ--YTLISCDEALTL 112 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~~~~--~--~~--------------~~~~----~~~~~~~~--~~~~~~~~~~~i 112 (237)
..+|++|+|......+..++...+..... + .+ .... ........ ..+....++.++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 483 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPGGVL 483 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCCCEE
Confidence 45899999999988888877766654332 1 11 0000 01111111 222344455899
Q ss_pred EEeecccchHHHHHHHhhCCCc-eEEEeCCCCHHHHHHHHHHhhcCCC-CEEEEcCccccccCCCCC--cEEEEecCCC-
Q psy15610 113 VFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQKEREEALRRFRSGET-PILVATAVAARGLDIPHV--KHVINFDLPS- 187 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gvdl~~~--~~Vi~~~~p~- 187 (237)
||+++-+.++.+.+.+...... ....+|..+.+ ..++.|.++.- .++|+|..+.+|+|+|.- ..||....|.
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999876542 34455554444 67777776555 899999999999999985 5566655432
Q ss_pred -----------------------------CHHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 188 -----------------------------DVEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 188 -----------------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
-...+.|.+||+-|.-+....+++++..
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 2335679999999976665566666543
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=0.0002 Score=66.58 Aligned_cols=126 Identities=18% Similarity=0.283 Sum_probs=87.4
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCC-------ceEEEeCCCCHHHHHHHHHHhhc----CCCCEEEEc--Cccccc
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGY-------PVTSIHGDRTQKEREEALRRFRS----GETPILVAT--AVAARG 171 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~G 171 (237)
..-++.++||.++-...+.+.+.+...+. ...++-+. ...++..+++.|++ +.-.||+++ ..+.+|
T Consensus 519 ~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 519 KIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred hcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 33457799999999999998888765432 12233232 22577888999964 455699998 889999
Q ss_pred cCCCC--CcEEEEecCCC----CH---------------------------HHHHHhhcccccCCCCCceEEeecCCCCC
Q psy15610 172 LDIPH--VKHVINFDLPS----DV---------------------------EEYVHRIGRTGRMGNLDFPFSYNQPGYGG 218 (237)
Q Consensus 172 vdl~~--~~~Vi~~~~p~----s~---------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 218 (237)
+|+++ +..||..+.|. ++ ..+.|.+||+-|--.+-.++++++..-..
T Consensus 598 IDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R~~~ 677 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKRYAR 677 (705)
T ss_pred cccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehhcCC
Confidence 99997 57788887764 11 13458899999987776677777655222
Q ss_pred CCCCCCCCCCCCCCCccC
Q psy15610 219 SYGGSSSQNSNAPDWWND 236 (237)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ 236 (237)
.+..+..|+||..
T Consensus 678 -----~~~~~~lp~W~~~ 690 (705)
T TIGR00604 678 -----SNKRKKLPKWIQD 690 (705)
T ss_pred -----cchhhhcCHHHHh
Confidence 2345667888854
No 151
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.75 E-value=0.00016 Score=69.17 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=83.4
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC--ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC--cEEE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY--PVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV--KHVI 181 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~--~~Vi 181 (237)
..++.++||.++.+..+.+++.|..... ....+.=+++...|.++++.|+++.-.||++|..+.+|||+|+- .+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3467899999999999999999875421 12233324444557889999999888899999999999999975 5677
Q ss_pred EecCCC----C--------------------------HHHHHHhhcccccCCCCCceEEeecCC-CCCCCCC
Q psy15610 182 NFDLPS----D--------------------------VEEYVHRIGRTGRMGNLDFPFSYNQPG-YGGSYGG 222 (237)
Q Consensus 182 ~~~~p~----s--------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~ 222 (237)
....|. + ...+.|.+||.-|..+...++++++.. ....|+.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~ 901 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGK 901 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHH
Confidence 655442 1 224478889999988665566666655 2344543
No 152
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.69 E-value=0.00014 Score=59.28 Aligned_cols=67 Identities=18% Similarity=0.413 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCCEEEEcCccccccCCCC--------CcEEEEecCCCCHHHHHHhhcccccCCCCCce-EEeec
Q psy15610 147 REEALRRFRSGETPILVATAVAARGLDIPH--------VKHVINFDLPSDVEEYVHRIGRTGRMGNLDFP-FSYNQ 213 (237)
Q Consensus 147 r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~--------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~-~~~~~ 213 (237)
.....+.|.+|+..|+|.|++++.|+.++. -.+-|...+|||....+|..||++|.|+.... |.++.
T Consensus 50 N~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 50 NIAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred cHHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 345668999999999999999999998874 24677899999999999999999999986443 44333
No 153
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.58 E-value=0.00037 Score=65.70 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=77.8
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCC--CcEEEEe
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPH--VKHVINF 183 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~--~~~Vi~~ 183 (237)
..+++++|+.+|.+..+.+++.|......+ ...|... .+.++++.|+++.-.||++|..+.+|+|+|. ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 456789999999999999999997655444 4545322 2456899999988899999999999999974 4445554
Q ss_pred cCC----CC--------------------------HHHHHHhhcccccCCCCCceEEeecCC
Q psy15610 184 DLP----SD--------------------------VEEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 184 ~~p----~s--------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
..| .+ ...+.|.+||.-|......++++++..
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 433 22 224678899999987665566666655
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.56 E-value=0.0011 Score=57.58 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=92.5
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC--ccccccCCCCCcEEEE
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA--VAARGLDIPHVKHVIN 182 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gvdl~~~~~Vi~ 182 (237)
......++||+++--.--.+..+|.+.++.+..+|.-.+..+..+.-..|..|+.++|+.|. ..=+-..+..+..||+
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999995 3334556778999999
Q ss_pred ecCCCCHHHHHHhhcccccCCC------CCceEEeecCC
Q psy15610 183 FDLPSDVEEYVHRIGRTGRMGN------LDFPFSYNQPG 215 (237)
Q Consensus 183 ~~~p~s~~~~~Q~~GR~~R~g~------~~~~~~~~~~~ 215 (237)
|++|..+.-|...++..+...+ ...|.++++.-
T Consensus 377 Y~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 377 YGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred ECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 9999999999888865554433 45666666643
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.55 E-value=0.00091 Score=62.13 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCHHHHHHHHHHhh----cCCCCEEEEcCccccccCCCC--CcE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRFR----SGETPILVATAVAARGLDIPH--VKH 179 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gvdl~~--~~~ 179 (237)
..+.++||.++....+.++..|... +.. ...+|.. .+.++++.|+ .+.-.||++|..+.+|||+|+ +.+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3445899999999999999988643 333 3445643 4566776666 466779999999999999987 567
Q ss_pred EEEecCCC----CH--------------------------HHHHHhhcccccCCCCCceEEeecCC
Q psy15610 180 VINFDLPS----DV--------------------------EEYVHRIGRTGRMGNLDFPFSYNQPG 215 (237)
Q Consensus 180 Vi~~~~p~----s~--------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~ 215 (237)
||....|. ++ ..+.|.+||.-|...+..+++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 87765442 22 13468889999987665566666654
No 156
>KOG0331|consensus
Probab=97.54 E-value=0.00011 Score=64.70 Aligned_cols=97 Identities=31% Similarity=0.424 Sum_probs=77.0
Q ss_pred ccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHH
Q psy15610 18 VGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREE 97 (237)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (237)
.+.....|....-...+..|+..++.-.......+ +||||+|+..++++.+.+...++++..+|++.+|..|..
T Consensus 309 a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~K------vIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 309 ANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGK------VIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred hhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCc------EEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 44455566666667788888866666665444443 999999999999999999999999999999999999998
Q ss_pred HhhhhhhccCCceEEEEeecccchHHH
Q psy15610 98 AQQYTLISCDEALTLVFVETKKGADQL 124 (237)
Q Consensus 98 ~~~~~~~~~~~~~~iIF~~t~~~~~~l 124 (237)
. +..+..++.-|.+.|...++.+
T Consensus 383 ~----L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 383 V----LKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred H----HHhcccCCcceEEEcccccccC
Confidence 8 5557778888888887766654
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.00039 Score=64.29 Aligned_cols=114 Identities=21% Similarity=0.183 Sum_probs=86.6
Q ss_pred hhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCc--
Q psy15610 101 YTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVK-- 178 (237)
Q Consensus 101 ~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~-- 178 (237)
.......++++||-+.+.+..+.+.+.|.+.|++..++...-...+-+.+..+-+ .-.|-|+|..+++|-|+.--.
T Consensus 422 I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~ 499 (822)
T COG0653 422 IKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNP 499 (822)
T ss_pred HHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCH
Confidence 4455678999999999999999999999999999888887655433333333222 234778999999999985433
Q ss_pred ---------EEEEecCCCCHHHHHHhhcccccCCCCCceEEeecCCC
Q psy15610 179 ---------HVINFDLPSDVEEYVHRIGRTGRMGNLDFPFSYNQPGY 216 (237)
Q Consensus 179 ---------~Vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 216 (237)
+||-.....|..---|-.||+||.|-+|...+|++..+
T Consensus 500 ~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 500 EFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 46666666666666699999999999999888887544
No 158
>KOG1001|consensus
Probab=97.43 E-value=1.4e-05 Score=73.03 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=91.5
Q ss_pred ceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCC-C-EEEEcCccccccCCCCCcEEEEecCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGET-P-ILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~-~-vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
.+++||+.-...+..+...|...++....+.|.|+...|.+.+..|.++.. . .+++..+++.|+|+..+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999999999999999998889999999999999999999999996653 3 44667999999999999999999999
Q ss_pred CCHHHHHHhhcccccCCCCCceEE
Q psy15610 187 SDVEEYVHRIGRTGRMGNLDFPFS 210 (237)
Q Consensus 187 ~s~~~~~Q~~GR~~R~g~~~~~~~ 210 (237)
|++...-|.+.|++|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998765544
No 159
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.26 E-value=0.0048 Score=45.49 Aligned_cols=79 Identities=24% Similarity=0.224 Sum_probs=54.6
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCC-CEEEEcCccccccCCCCC--cEEEEecCCC----C--------------------
Q psy15610 136 TSIHGDRTQKEREEALRRFRSGET-PILVATAVAARGLDIPHV--KHVINFDLPS----D-------------------- 188 (237)
Q Consensus 136 ~~~h~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gvdl~~~--~~Vi~~~~p~----s-------------------- 188 (237)
..+.-+....+...+++.|++..- .||+++..+.+|+|+|+- ..||....|. +
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 444444566667888999987543 799999889999999974 5677766542 1
Q ss_pred -------HHHHHHhhcccccCCCCCceEEeecC
Q psy15610 189 -------VEEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 189 -------~~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
...+.|.+||+-|...+-.++++++.
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12345888999997766556666544
No 160
>KOG0332|consensus
Probab=97.20 E-value=0.0019 Score=54.27 Aligned_cols=104 Identities=23% Similarity=0.339 Sum_probs=80.3
Q ss_pred HHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccc
Q psy15610 41 LLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKG 120 (237)
Q Consensus 41 l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~ 120 (237)
|..++.--+ .||||.|+..+..++..+...|+.+..+|+++....|..+ +..++.++.-|...|..-
T Consensus 324 lyg~~tigq---------siIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~i----i~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 324 LYGLLTIGQ---------SIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAI----IDRFREGKEKVLITTNVC 390 (477)
T ss_pred HHhhhhhhh---------eEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHH----HHHHhcCcceEEEEechh
Confidence 555555555 8999999999999999999999999999999999998877 444445555555555554
Q ss_pred hHHH-----------------------HHHHhhC---------CCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 121 ADQL-----------------------EDFLHHH---------GYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 121 ~~~l-----------------------~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
++.+ +.||++. |..+.++|.+-+.+.-.++.+.|...
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 4444 6777754 55678899999998888888988653
No 161
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.09 E-value=0.0042 Score=45.89 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCC---ceEEEeCCCCHHHHHHHHHHhhcCCC---CEEEEcCc--cccccCCCC--CcEEEEecCCC----
Q psy15610 122 DQLEDFLHHHGY---PVTSIHGDRTQKEREEALRRFRSGET---PILVATAV--AARGLDIPH--VKHVINFDLPS---- 187 (237)
Q Consensus 122 ~~l~~~L~~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlv~T~~--~~~Gvdl~~--~~~Vi~~~~p~---- 187 (237)
+.+.+.+...+. ...++.-+....+...+++.|++..- .||+++.- +.+|+|+|+ ++.||....|.
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~ 84 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPD 84 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCC
Confidence 444555544332 22233323333345678888886543 58888866 999999998 46777766552
Q ss_pred CH---------------------------HHHHHhhcccccCCCCCceEEeecC
Q psy15610 188 DV---------------------------EEYVHRIGRTGRMGNLDFPFSYNQP 214 (237)
Q Consensus 188 s~---------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~ 214 (237)
++ ..+.|.+||+-|..++-.++++++.
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 85 SPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 11 2345888999998777666666654
No 162
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.09 E-value=0.0067 Score=55.42 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=80.1
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC----CCCEEEEcCccccccCC-------
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG----ETPILVATAVAARGLDI------- 174 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gvdl------- 174 (237)
..++.++|.+.+...++.+++.|...---...+.|+.+ .+..+++.|++. .-.||++|+.+.+|+|+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 34678999999999999999998654223345556443 345577888764 68899999999999999
Q ss_pred -CC--CcEEEEecCCC-------------------------CHHHHHHhhcccccCCCC--CceEEeecCCCCCCCCC
Q psy15610 175 -PH--VKHVINFDLPS-------------------------DVEEYVHRIGRTGRMGNL--DFPFSYNQPGYGGSYGG 222 (237)
Q Consensus 175 -~~--~~~Vi~~~~p~-------------------------s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~~~~~ 222 (237)
|. +.+||....|. ..-.+.|-+||.-|.... ...+.++++.-...|+.
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~ 623 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYME 623 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHH
Confidence 22 66777655441 122456888998887766 56667777665555654
No 163
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.04 E-value=0.0018 Score=60.67 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=31.2
Q ss_pred echhHHHHHHHhhcCchhh-----hcccccceeEEeecccchhhHHHHhhh
Q psy15610 33 DEQDKRSCLLDLLSSPSQE-----ELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~-----~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
++..|...|.++|..-... ...++.++|+||.....+.++.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 5677888888888553222 113456688888888888888887743
No 164
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.91 E-value=0.006 Score=58.06 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=65.0
Q ss_pred EEEEeecccchHHHHHHHhhC------CCceEEEeCCCCHHHHHHHHHHh----------------------hc----CC
Q psy15610 111 TLVFVETKKGADQLEDFLHHH------GYPVTSIHGDRTQKEREEALRRF----------------------RS----GE 158 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f----------------------~~----g~ 158 (237)
.+|=.++.+.+-.++..|... .+.+.+||+..+-..|..+++.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 345566666676776666543 24578899999877777766543 11 35
Q ss_pred CCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCCC
Q psy15610 159 TPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGN 204 (237)
Q Consensus 159 ~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 204 (237)
..|+|+|.+.+.|+|+ +.+++|- -|.+...++|++||+.|-|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 6799999999999996 3444443 45669999999999999774
No 165
>KOG0326|consensus
Probab=96.86 E-value=0.0013 Score=54.26 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=50.6
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+-.=+..|+.-|.-.+ .|+||++...+|.++..+.+.|++|+++|..|.|..|+++++
T Consensus 309 KvhCLntLfskLqINQ---------sIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFH 366 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQINQ---------SIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFH 366 (459)
T ss_pred hhhhHHHHHHHhcccc---------eEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhh
Confidence 3344566776676677 899999999999999999999999999999999999999976
No 166
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.57 E-value=0.0091 Score=55.48 Aligned_cols=76 Identities=25% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-cccccCCCCCcEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARGLDIPHVKHVI 181 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gvdl~~~~~Vi 181 (237)
.+.+++|.+||+.-+.++++.+.+ .++++..+||+++..+|...+....+|..+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 467899999999988887776654 4789999999999999999999999999999999965 44466788888766
Q ss_pred E
Q psy15610 182 N 182 (237)
Q Consensus 182 ~ 182 (237)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 167
>KOG0333|consensus
Probab=96.56 E-value=0.004 Score=54.58 Aligned_cols=78 Identities=33% Similarity=0.527 Sum_probs=60.0
Q ss_pred echhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEE
Q psy15610 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTL 112 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 112 (237)
++..|+.-+++-...+. +|+|+|++.+++.++..|...++.+..+|+...|..|..++ ..+..+..=
T Consensus 503 ~k~kkL~eil~~~~~pp---------iIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL----~~fr~~t~d 569 (673)
T KOG0333|consen 503 EKRKKLIEILESNFDPP---------IIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL----ADFREGTGD 569 (673)
T ss_pred HHHHHHHHHHHhCCCCC---------EEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH----HHHHhcCCC
Confidence 44566655555444444 99999999999999999999999999999999999998884 444455566
Q ss_pred EEeecccchHH
Q psy15610 113 VFVETKKGADQ 123 (237)
Q Consensus 113 IF~~t~~~~~~ 123 (237)
||+.|...++.
T Consensus 570 IlVaTDvAgRG 580 (673)
T KOG0333|consen 570 ILVATDVAGRG 580 (673)
T ss_pred EEEEecccccC
Confidence 77777665443
No 168
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.33 E-value=0.022 Score=52.97 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=62.2
Q ss_pred CCceEEEEeecccchHHHHHHHhh-CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN 182 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~ 182 (237)
.+.+++|.+|+...+.++.+.+.+ .+..+..+||+++..+|.+.+....+|..+|+|+|.... -..+.+...||.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVv 264 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIV 264 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEE
Confidence 467899999999999999888876 477899999999999999999999999999999997432 244566666664
No 169
>KOG0328|consensus
Probab=96.29 E-value=0.0056 Score=49.78 Aligned_cols=56 Identities=29% Similarity=0.498 Sum_probs=45.7
Q ss_pred eEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeeccc
Q psy15610 60 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKK 119 (237)
Q Consensus 60 i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~ 119 (237)
++||+|+..+..+.+.+...+|.+...|+++.|.+|+.+ ...+..+++-|...|..
T Consensus 270 vIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~i----m~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 270 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKI----MNDFRSGKSRVLITTDV 325 (400)
T ss_pred EEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHH----HHHhhcCCceEEEEech
Confidence 789999999999999999999999999999999999877 44444455445555544
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.25 E-value=0.022 Score=51.03 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=61.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN 182 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~ 182 (237)
+.+++|.+|+...+.++.+.|.+. +..+.++||+++..+|........+|..+|+|+|...-. ..+++...||.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 578999999999999998888754 678999999999999999999999999999999965332 34566666664
No 171
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.05 E-value=0.021 Score=52.71 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=63.2
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcc-ccccCCCCCcEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA-ARGLDIPHVKHVI 181 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~-~~Gvdl~~~~~Vi 181 (237)
.+.++++.+||+.-+.++++.+.+ .++++..++|+++..+|...++...+|..+|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 466899999999998888776654 37899999999999999999999999999999999653 3456777777766
Q ss_pred E
Q psy15610 182 N 182 (237)
Q Consensus 182 ~ 182 (237)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 172
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=95.97 E-value=0.094 Score=47.00 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=62.7
Q ss_pred CceeEEEEee-chhHHHHHHHhhcCchhhh--cccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 24 NITQRIAWVD-EQDKRSCLLDLLSSPSQEE--LGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 24 ~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~--~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
.++...+.+. +.+|.+.+..|.+....+. -+..+|.|+|++++.++.+++..|...|.++.-.|..+....|..+
T Consensus 405 plErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 405 PLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred ChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHH
Confidence 4444455555 6789999999998765444 4678999999999999999999999999999999999998888766
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.96 E-value=0.025 Score=52.22 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=84.4
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh---hhh-------hccCCceEEEEeecccchHH
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ---YTL-------ISCDEALTLVFVETKKGADQ 123 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~iIF~~t~~~~~~ 123 (237)
..+ ++|+|.+.+.....+...=...-..|......+.-........ +.. -.+++. -|-....-.+.
T Consensus 367 ~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~---~l~~~g~Gter 442 (665)
T PRK14873 367 EHG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD---RLRAVVVGARR 442 (665)
T ss_pred hcC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC---cceeeeccHHH
Confidence 345 9999999999877655555555555555554444322111111 111 111111 12233345667
Q ss_pred HHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC----ccccccCCCCCcEEEEecC------CC----
Q psy15610 124 LEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILVATA----VAARGLDIPHVKHVINFDL------PS---- 187 (237)
Q Consensus 124 l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~~Gvdl~~~~~Vi~~~~------p~---- 187 (237)
+++.|.+. +.++....+ ..+++.|. ++.+|||+|. ++. ++++.|+..|. |.
T Consensus 443 ~eeeL~~~FP~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~ 509 (665)
T PRK14873 443 TAEELGRAFPGVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAA 509 (665)
T ss_pred HHHHHHHHCCCCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChH
Confidence 77777654 555655443 24788887 5899999998 444 35566665443 21
Q ss_pred --CHHHHHHhhcccccCCCCCceEEee
Q psy15610 188 --DVEEYVHRIGRTGRMGNLDFPFSYN 212 (237)
Q Consensus 188 --s~~~~~Q~~GR~~R~g~~~~~~~~~ 212 (237)
....++|.+||+||.+..|.+++-.
T Consensus 510 Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 510 EDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 3556789999999988888887764
No 174
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.75 E-value=0.05 Score=50.29 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhC-C-CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH-G-YPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVIN 182 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~ 182 (237)
.+.++||.++......++.+.|... + ..+.++|+++++.+|.+.+....+|+.+|+|.|..+- =.-+++.-.||.
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLIIv 263 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVAI 263 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEEE
Confidence 4678999999999999998888764 4 6799999999999999999999999999999996542 123445555554
No 175
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.64 E-value=0.04 Score=52.84 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=63.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-cccccCCCCCcEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARGLDIPHVKHVI 181 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gvdl~~~~~Vi 181 (237)
.+.+++|.+||+.-+.++.+.+.+. ++++..++|..+..++.+..+.+++|..+|+|+|.. +...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999988877653 667889999999999999999999999999999964 44456777887766
Q ss_pred E
Q psy15610 182 N 182 (237)
Q Consensus 182 ~ 182 (237)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 176
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.44 E-value=0.046 Score=50.76 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVI 181 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi 181 (237)
++.++||.+|......++...+... +.++..+|+++++.+|...+.+..+|+.+|+|.|..+- =.-+++.-.||
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEEE
Confidence 3689999999999888887777654 88999999999999999999999999999999996431 12334444444
No 177
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.28 E-value=0.067 Score=52.52 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=62.2
Q ss_pred cCCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-cccccCCCCCcEE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-AARGLDIPHVKHV 180 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gvdl~~~~~V 180 (237)
.++.+++|.+||+..+.++...+.+. ++.+..++|..+..++.++++..++|..+|+|+|.. +...+.+.++.++
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 35678999999999999998877642 467788999999999999999999999999999964 3334566677765
Q ss_pred EE
Q psy15610 181 IN 182 (237)
Q Consensus 181 i~ 182 (237)
|.
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 53
No 178
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.061 Score=51.07 Aligned_cols=64 Identities=30% Similarity=0.376 Sum_probs=52.8
Q ss_pred hccCCceEEEEeecccchHHHHHHHhhC----C-CceEE-EeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 104 ISCDEALTLVFVETKKGADQLEDFLHHH----G-YPVTS-IHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 104 ~~~~~~~~iIF~~t~~~~~~l~~~L~~~----~-~~~~~-~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
...++.++.+.+||..-+.+..+-|... + ..+.+ ||+.++..+++...++|.+|.++|+|+|..
T Consensus 121 ~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 121 LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3455789999999999888887777654 2 44433 999999999999999999999999999964
No 179
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.023 Score=51.09 Aligned_cols=79 Identities=29% Similarity=0.406 Sum_probs=61.9
Q ss_pred echhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEE
Q psy15610 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTL 112 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 112 (237)
++.+-+..+++.....+ +|+||+|+..++.++..|...|+.+..+|+++.|..|..... .+..++.-
T Consensus 259 ~k~~~L~~ll~~~~~~~---------~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~----~F~~g~~~ 325 (513)
T COG0513 259 EKLELLLKLLKDEDEGR---------VIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE----KFKDGELR 325 (513)
T ss_pred HHHHHHHHHHhcCCCCe---------EEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH----HHHcCCCC
Confidence 46677777777776666 899999999999999999999999999999999999998844 33345555
Q ss_pred EEeecccchHHH
Q psy15610 113 VFVETKKGADQL 124 (237)
Q Consensus 113 IF~~t~~~~~~l 124 (237)
|.+.|...++.+
T Consensus 326 vLVaTDvaaRGi 337 (513)
T COG0513 326 VLVATDVAARGL 337 (513)
T ss_pred EEEEechhhccC
Confidence 555565554443
No 180
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.91 E-value=0.17 Score=46.27 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=64.8
Q ss_pred ccCCceEEEEeecccchH----HHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcc-ccccCCCCCcE
Q psy15610 105 SCDEALTLVFVETKKGAD----QLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVA-ARGLDIPHVKH 179 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~----~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~-~~Gvdl~~~~~ 179 (237)
...+.++...+||---|+ .+.++|...++++..+.|++....|..++....+|.++++|.|.++ ...+++.+.-+
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 455778999999966555 4556666679999999999999999999999999999999999875 45888888777
Q ss_pred EEE
Q psy15610 180 VIN 182 (237)
Q Consensus 180 Vi~ 182 (237)
||.
T Consensus 388 VIi 390 (677)
T COG1200 388 VII 390 (677)
T ss_pred EEE
Confidence 665
No 181
>KOG0342|consensus
Probab=94.64 E-value=0.027 Score=49.14 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=57.5
Q ss_pred HHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecc
Q psy15610 39 SCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETK 118 (237)
Q Consensus 39 ~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~ 118 (237)
..|.+-+..+. +|+|+.|...+..+++.|...+.++.+||+...|+.|+.. ...+......|.+.|.
T Consensus 322 ~~LKk~~~~~K---------iiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~----~~~F~kaesgIL~cTD 388 (543)
T KOG0342|consen 322 TFLKKNIKRYK---------IIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST----FFEFCKAESGILVCTD 388 (543)
T ss_pred HHHHHhcCCce---------EEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH----HHHHhhcccceEEecc
Confidence 45566666344 9999999999999999999999999999999999999877 3334455566666676
Q ss_pred cchHHH
Q psy15610 119 KGADQL 124 (237)
Q Consensus 119 ~~~~~l 124 (237)
..|+.+
T Consensus 389 VaARGl 394 (543)
T KOG0342|consen 389 VAARGL 394 (543)
T ss_pred hhhccC
Confidence 666655
No 182
>PRK14701 reverse gyrase; Provisional
Probab=94.32 E-value=0.14 Score=51.90 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=53.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhC------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
++.+++|.+||+.-+.++.+.+... +..+..+||+++..++...++.+.+|..+|+|+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5668999999999999888887752 456788999999999999999999999999999964
No 183
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.26 E-value=0.23 Score=46.48 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCc--EEEEec
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVK--HVINFD 184 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~--~Vi~~~ 184 (237)
.+..+-||+.|...++.++++....+..+..+++..+..+.+ . =++.+|++=|.++..|+++-+.. -++.|=
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 456677999999999999999998888888888876665321 1 24688999999999999886543 344442
Q ss_pred CC----CCHHHHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 185 LP----SDVEEYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 185 ~p----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
-| .+..+..|++||+-... ....++++++...
T Consensus 355 k~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDASGA 390 (824)
T ss_pred cCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecccc
Confidence 22 24556789999997765 4566677765433
No 184
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.20 E-value=0.2 Score=48.51 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=66.4
Q ss_pred cCCceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc-CccccccCCCCCcEE
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVAT-AVAARGLDIPHVKHV 180 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gvdl~~~~~V 180 (237)
.++.++.|.+||.--+++..+-+.++ .+++..++.-.+..+...+++..++|.++|+|.| ..+..++.+.+.-.+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 45789999999999998887777654 6678899999999999999999999999999999 567888888888776
Q ss_pred EE
Q psy15610 181 IN 182 (237)
Q Consensus 181 i~ 182 (237)
|.
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 64
No 185
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=94.02 E-value=0.15 Score=47.95 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=43.9
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhc--------CCCceeecCCcchhhHHHHhh
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHH--------GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~ 100 (237)
++...+.+++.. +.++|+||+|+..++.+++.+... +..+..+|+.+.+..|..+..
T Consensus 259 ~~~~~l~~l~~~--------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 259 EAADLLADLVAE--------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred HHHHHHHHHHHC--------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 355556555542 357999999999999999988653 567788999999999887744
No 186
>KOG0298|consensus
Probab=94.02 E-value=0.067 Score=51.77 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=69.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEE-EEcCccccccCCCCCcEEEEecC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPIL-VATAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl-v~T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
...++|+|+.-....+-++..+.-.++....--+ -++-...+..|++ ++++ +-+...+-|+|+-++.+|+..++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 3467999999888888777766544433222211 1223344555554 6554 55788899999999999999999
Q ss_pred CCCHHHHHHhhcccccCCCCCc
Q psy15610 186 PSDVEEYVHRIGRTGRMGNLDF 207 (237)
Q Consensus 186 p~s~~~~~Q~~GR~~R~g~~~~ 207 (237)
-.++..-.|.+||++|.|+..-
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccc
Confidence 9999999999999999997643
No 187
>KOG4284|consensus
Probab=94.02 E-value=0.038 Score=49.98 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=66.0
Q ss_pred eechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceE
Q psy15610 32 VDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALT 111 (237)
Q Consensus 32 ~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (237)
..+-+++.-+++-|-..+ +|+||.....++.++..|...|+++..+.+.|.|+.|..+.. ......+
T Consensus 257 rlklq~L~~vf~~ipy~Q---------AlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~----~lr~f~~ 323 (980)
T KOG4284|consen 257 RLKLQKLTHVFKSIPYVQ---------ALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVD----QLRAFRV 323 (980)
T ss_pred HHHHHHHHHHHhhCchHH---------HHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHH----HhhhceE
Confidence 456789999999999999 899999999999999999999999999999999999987733 3334556
Q ss_pred EEEeecccchHHH
Q psy15610 112 LVFVETKKGADQL 124 (237)
Q Consensus 112 iIF~~t~~~~~~l 124 (237)
-|.+.|.-.++.+
T Consensus 324 rILVsTDLtaRGI 336 (980)
T KOG4284|consen 324 RILVSTDLTARGI 336 (980)
T ss_pred EEEEecchhhccC
Confidence 6666666655554
No 188
>KOG0701|consensus
Probab=93.88 E-value=0.039 Score=54.96 Aligned_cols=95 Identities=28% Similarity=0.446 Sum_probs=76.7
Q ss_pred ceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCH-----------HHHHHHHHHhhcCCCCEEEEcCccccccCCCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQ-----------KEREEALRRFRSGETPILVATAVAARGLDIPH 176 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~-----------~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~ 176 (237)
-..++||+.+..+....+.+.+. ...+..+-|.+.+ ..+..++..|......+|+.|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 46889999998888877777654 2333345554332 33667788899999999999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHhhcccccCC
Q psy15610 177 VKHVINFDLPSDVEEYVHRIGRTGRMG 203 (237)
Q Consensus 177 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 203 (237)
++.++.++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997764
No 189
>KOG1513|consensus
Probab=93.56 E-value=0.079 Score=49.14 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=47.1
Q ss_pred HHHHhhcCCCCEEEEcCccccccCCCCCcE--------EEEecCCCCHHHHHHhhcccccCCCC
Q psy15610 150 ALRRFRSGETPILVATAVAARGLDIPHVKH--------VINFDLPSDVEEYVHRIGRTGRMGNL 205 (237)
Q Consensus 150 ~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~--------Vi~~~~p~s~~~~~Q~~GR~~R~g~~ 205 (237)
--++|-.|+-.|.|-+.+++-|+.++.-.. -|-+..|||...-+|..||.+|..+.
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQV 912 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQV 912 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccccc
Confidence 345788899899999999999999886544 45588999999999999999998754
No 190
>KOG0335|consensus
Probab=93.47 E-value=0.14 Score=45.06 Aligned_cols=91 Identities=42% Similarity=0.540 Sum_probs=64.7
Q ss_pred EEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccC
Q psy15610 28 RIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCD 107 (237)
Q Consensus 28 ~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (237)
++..-++..++-.++.-..-.....-+....+++|++|+..+.+++.+|...++++..+|++..|..|... +-.+.
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a----l~~Fr 384 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA----LNDFR 384 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH----HHHhh
Confidence 44455666666555554442222223344469999999999999999999999999999999999999877 45555
Q ss_pred CceEEEEeecccchH
Q psy15610 108 EALTLVFVETKKGAD 122 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~ 122 (237)
..+.-|++.|.-.++
T Consensus 385 ~g~~pvlVaT~VaaR 399 (482)
T KOG0335|consen 385 NGKAPVLVATNVAAR 399 (482)
T ss_pred cCCcceEEEehhhhc
Confidence 666667776654433
No 191
>PTZ00110 helicase; Provisional
Probab=93.38 E-value=0.089 Score=47.72 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=54.6
Q ss_pred eechhHHHHHHHhhc-CchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCce
Q psy15610 32 VDEQDKRSCLLDLLS-SPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEAL 110 (237)
Q Consensus 32 ~~~~~k~~~l~~ll~-~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (237)
.++..++..++.-+. ... ++|+||+|+..++.+++.|...++++..+|+++.+..|..+.. .+..++
T Consensus 360 ~~k~~~L~~ll~~~~~~~~--------k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~----~F~~G~ 427 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGD--------KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN----EFKTGK 427 (545)
T ss_pred hhHHHHHHHHHHHhcccCC--------eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH----HHhcCC
Confidence 355566655555443 222 2899999999999999999999999999999999999987643 333344
Q ss_pred EEEEeeccc
Q psy15610 111 TLVFVETKK 119 (237)
Q Consensus 111 ~iIF~~t~~ 119 (237)
.-|.+.|..
T Consensus 428 ~~ILVaTdv 436 (545)
T PTZ00110 428 SPIMIATDV 436 (545)
T ss_pred CcEEEEcch
Confidence 445555543
No 192
>PHA02653 RNA helicase NPH-II; Provisional
Probab=93.27 E-value=0.52 Score=43.81 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=58.3
Q ss_pred HHHhhcceeEEEeeccCCCCCceeEEEEeec----------hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHH
Q psy15610 4 KEFLYRYIFLAIGRVGSTSENITQRIAWVDE----------QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLE 73 (237)
Q Consensus 4 ~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~ 73 (237)
++|+.+|..+.+. +.+..+|++.|+.... .++...+ ..+.... ......+|+|+++...++.++
T Consensus 339 ~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l-~~L~~~~---~~~~g~iLVFlpg~~ei~~l~ 412 (675)
T PHA02653 339 KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIV-TALKKYT---PPKGSSGIVFVASVSQCEEYK 412 (675)
T ss_pred HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHHH-HHHHHhh---cccCCcEEEEECcHHHHHHHH
Confidence 4788899888874 4456788888875331 1222222 2222110 112357999999999999999
Q ss_pred HHhhhc--CCCceeecCCcchh
Q psy15610 74 DFLHHH--GYPVTSIHGDRTQK 93 (237)
Q Consensus 74 ~~l~~~--~~~~~~~~~~~~~~ 93 (237)
+.|... ++.+..+|+.+.+.
T Consensus 413 ~~L~~~~~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 413 KYLEKRLPIYDFYIIHGKVPNI 434 (675)
T ss_pred HHHHhhcCCceEEeccCCcCHH
Confidence 999887 68999999999875
No 193
>KOG0330|consensus
Probab=93.17 E-value=0.15 Score=43.50 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=46.4
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccch
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGA 121 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~ 121 (237)
+|+||+|..+...++-.|...|+.+..+|++|.|..|.-. +..++.+..=|.+.|.-..
T Consensus 303 ~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~----l~~Fk~~~r~iLv~TDVaS 361 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGA----LNKFKAGARSILVCTDVAS 361 (476)
T ss_pred EEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHH----HHHHhccCCcEEEecchhc
Confidence 8999999999999999999999999999999999998766 3333344333444444433
No 194
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=92.82 E-value=0.12 Score=45.88 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=46.8
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.+.+..++....... +|+||+|+..++.+++.|...++.+..+|+.+.+..|..+..
T Consensus 230 ~~~l~~ll~~~~~~~---------~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~ 286 (460)
T PRK11776 230 LPALQRLLLHHQPES---------CVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLV 286 (460)
T ss_pred HHHHHHHHHhcCCCc---------eEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 344545555554445 899999999999999999999999999999999999887744
No 195
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.72 E-value=0.29 Score=48.37 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=51.0
Q ss_pred cCCceEEEEeecccchHHHHHHHhhC----CCc---eEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHH----GYP---VTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
.++.+++|.+||+.-+.++.+.+... ++. +..+||+++..++....+.+.+|..+|+|+|+.
T Consensus 119 ~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 119 KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 34678999999999999988777653 333 346899999999999899999999999999963
No 196
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=92.71 E-value=0.26 Score=48.03 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=50.8
Q ss_pred EEEEeechhH-HHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 28 RIAWVDEQDK-RSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 28 ~~~~~~~~~k-~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.|..+++..+ ...+.+++.... .+...||||.|+..++.++..|...++.+..+|+.+.+..|..++.
T Consensus 656 ~y~Vv~k~kk~le~L~~~I~~~~-----~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 656 WYSVVPKTKKCLEDIDKFIKENH-----FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred EEEEeccchhHHHHHHHHHHhcc-----cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 3444444333 345555554321 2345899999999999999999999999999999999999988755
No 197
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.38 E-value=0.15 Score=44.70 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=38.9
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||+|+..++.+++.|...++.+..+|+++.+..|..+..
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~ 299 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE 299 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHH
Confidence 899999999999999999999999999999999998877643
No 198
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=92.35 E-value=0.34 Score=41.30 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=56.1
Q ss_pred hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC--CceeecCCcchhhHHHHhhhhhhccCCceEEE
Q psy15610 36 DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY--PVTSIHGDRTQKEREEAQQYTLISCDEALTLV 113 (237)
Q Consensus 36 ~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI 113 (237)
.+...+..++... ..+.++|+|++|+..++.+++.|...+. .+..+|+.+.+..|.......+...+.++.-|
T Consensus 207 ~~~~~l~~l~~~~-----~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~i 281 (358)
T TIGR01587 207 GEISSLERLLEFI-----KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFV 281 (358)
T ss_pred cCHHHHHHHHHHh-----hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeE
Confidence 4555666555322 2356899999999999999999988766 48899999999888765333333333444445
Q ss_pred EeecccchHHH
Q psy15610 114 FVETKKGADQL 124 (237)
Q Consensus 114 F~~t~~~~~~l 124 (237)
.+.|......+
T Consensus 282 lvaT~~~~~Gi 292 (358)
T TIGR01587 282 IVATQVIEASL 292 (358)
T ss_pred EEECcchhcee
Confidence 55554433333
No 199
>KOG0327|consensus
Probab=92.32 E-value=0.2 Score=42.57 Aligned_cols=40 Identities=40% Similarity=0.761 Sum_probs=38.3
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
.++|+||+..+..+..+|..+++.+..+|+++.|..|...
T Consensus 266 ~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~ 305 (397)
T KOG0327|consen 266 AVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTL 305 (397)
T ss_pred ceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHH
Confidence 5899999999999999999999999999999999999877
No 200
>KOG0347|consensus
Probab=92.24 E-value=0.29 Score=43.71 Aligned_cols=52 Identities=29% Similarity=0.363 Sum_probs=45.7
Q ss_pred EEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 111 TLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
++|+++|++-+-++...|... ++.+..+.||++....++++.. ..+|+|+|+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 999999999999988877653 8999999999999888888777 688999997
No 201
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.19 E-value=0.54 Score=41.83 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=53.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
...+||.+|+++-+......|...++.+..++++.+..++..+......+..+++++|+.
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 467999999999988888888888999999999999999999999999999999999863
No 202
>KOG0340|consensus
Probab=91.96 E-value=0.19 Score=42.41 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=49.8
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQ 123 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~ 123 (237)
+++|++|...++.++..|...++.+..+|+.+.|.+|... +..+..+.+-|...|....+.
T Consensus 257 imIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a----LsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA----LSRFRSNAARILIATDVASRG 317 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH----HHHHhhcCccEEEEechhhcC
Confidence 8999999999999999999999999999999999999877 444445555566666554443
No 203
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.89 E-value=0.19 Score=44.09 Aligned_cols=42 Identities=29% Similarity=0.527 Sum_probs=39.3
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||+++..++.+++.|...++.+..+|+++.+..|.....
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~ 289 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIK 289 (434)
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999987744
No 204
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.78 E-value=0.2 Score=45.77 Aligned_cols=42 Identities=40% Similarity=0.596 Sum_probs=39.1
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||+|+..++.+++.|...++.+..+|+.+.+..|.....
T Consensus 260 ~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~ 301 (572)
T PRK04537 260 TMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLN 301 (572)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999877644
No 205
>KOG2340|consensus
Probab=91.65 E-value=0.51 Score=42.00 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=84.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC--ccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA--VAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gvdl~~~~~Vi~~~~ 185 (237)
..-++||.|+--.--.+..++.+.++.+..+|.-.+.+.-.+.-..|-.|+..+|+-|. ..-+-.++..+..||+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 34579999999988999999999888888888777777777778889999999999885 3445678889999999999
Q ss_pred CCCHHHH---HHhhcccccCCC----CCceEEeecCCCC
Q psy15610 186 PSDVEEY---VHRIGRTGRMGN----LDFPFSYNQPGYG 217 (237)
Q Consensus 186 p~s~~~~---~Q~~GR~~R~g~----~~~~~~~~~~~~~ 217 (237)
|..|.=| +.|.+|+.-.|+ ...|.++++.-+.
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9987654 556666554442 2346666665444
No 206
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.28 E-value=0.2 Score=44.35 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=46.6
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.+-+..++.-..... +|+||+|+..++.+++.|...++.+..+|+.+.+..|.....
T Consensus 233 ~~~l~~l~~~~~~~~---------~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 233 RELLSQMIGKGNWQQ---------VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred HHHHHHHHHcCCCCc---------EEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 344445555555445 899999999999999999999999999999999999887744
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.22 E-value=0.23 Score=45.83 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=47.4
Q ss_pred chhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 34 EQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 34 ~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.+.+..+++...... +|+||+|+..++++++.|...++.+..+|+++.+..|..+..
T Consensus 232 k~~~L~~~L~~~~~~~---------~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~ 289 (629)
T PRK11634 232 KNEALVRFLEAEDFDA---------AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLE 289 (629)
T ss_pred HHHHHHHHHHhcCCCC---------EEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHH
Confidence 4444555555555444 899999999999999999999999999999999999887754
No 208
>KOG0921|consensus
Probab=90.40 E-value=0.39 Score=45.37 Aligned_cols=105 Identities=25% Similarity=0.351 Sum_probs=79.1
Q ss_pred CceEEEEeecccchHHHHHHHhhC-------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHV 180 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~V 180 (237)
.+.+++|.+--...-.+-.++... .+.+...|+-.+-.+..++.+....|..+++++|.+....+.+-++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 456788888877766666665432 4578888998888888899999999999999999998888877776665
Q ss_pred EEec------------------CCCCHHHHHHhhcccccCCCCCceEEeec
Q psy15610 181 INFD------------------LPSDVEEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 181 i~~~------------------~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
+..+ .-.+.....|+.||+||. ++|.|+..++
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 5422 112677888999999997 4777766554
No 209
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=90.40 E-value=1.1 Score=41.12 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=53.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
.+.++|.+|+..-+....+.|...|+.+..+|++++..++..+.+....|..++++.|+.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 456899999999888888888888999999999999999999999999999999988853
No 210
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.86 E-value=1.8 Score=33.41 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----c-ccccCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----A-ARGLDIPH 176 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gvdl~~ 176 (237)
++.+++|.+++...+.++...+.. .++.+..++|+.+..+..... . +...|+|+|.. + ....++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 356899999999988887666544 367788899998876554332 2 56789999952 2 22245666
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
.+.+|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777664
No 211
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=89.15 E-value=0.71 Score=41.97 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=42.2
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.....|++|.|+..+++++++|...|+.+...|+.+....|...++
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 3456899999999999999999999999999999999999988866
No 212
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.18 E-value=0.57 Score=41.73 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=37.5
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
+|+||+++..++.+++.|...++.+..+++.+.+..|...
T Consensus 338 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~ 377 (475)
T PRK01297 338 VMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKT 377 (475)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence 8999999999999999999999999999999999888766
No 213
>KOG0338|consensus
Probab=88.12 E-value=2.3 Score=37.90 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=54.9
Q ss_pred CceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC-------ccccccCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA-------VAARGLDIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-------~~~~Gvdl~~ 176 (237)
-.++||.|||++.+.++.....+ ..+.+...-||++-...++.++. ..+|+|+|+ --+.++|+.+
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~lds 327 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDS 327 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccc
Confidence 46799999999988877666554 37889999999999888877664 478999996 2456777777
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
+.+.|.
T Consensus 328 iEVLvl 333 (691)
T KOG0338|consen 328 IEVLVL 333 (691)
T ss_pred eeEEEe
Confidence 776664
No 214
>KOG0341|consensus
Probab=87.86 E-value=3.6 Score=35.50 Aligned_cols=42 Identities=31% Similarity=0.597 Sum_probs=39.5
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+++|+..+..++.+.++|.-.|.++..+|+...|..|...+.
T Consensus 424 VLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred eEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 799999999999999999999999999999999999987754
No 215
>PTZ00424 helicase 45; Provisional
Probab=87.36 E-value=0.69 Score=40.00 Aligned_cols=42 Identities=26% Similarity=0.593 Sum_probs=38.5
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+||+|...++.+++.+...++.+..+|+++.+..|..+..
T Consensus 270 ~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~ 311 (401)
T PTZ00424 270 AIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMR 311 (401)
T ss_pred EEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHH
Confidence 799999999999999999999999999999999998877644
No 216
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=87.08 E-value=1 Score=42.53 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=80.2
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCC
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDE 108 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (237)
.+.+...+|...+.+.+.... ....++|+||+|+..++.++..|...++++..+|+.+.+..+...... ...
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~----~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~a----g~~ 476 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERH----ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEA----GQK 476 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHH----hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHc----CCC
Confidence 455677889999998886531 236789999999999999999999999999999999877665544222 122
Q ss_pred ceEEEEeecccchHHHHHHH----hhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 109 ALTLVFVETKKGADQLEDFL----HHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
++ |.+.|.-.++.+.-.| .+.| ...+++-+++...|.-....-++|+
T Consensus 477 g~--VlIATdmAgRG~DI~l~~~V~~~G-GL~VI~~d~p~s~r~y~qr~GRtGR 527 (790)
T PRK09200 477 GA--VTVATNMAGRGTDIKLGEGVHELG-GLAVIGTERMESRRVDLQLRGRSGR 527 (790)
T ss_pred Ce--EEEEccchhcCcCCCccccccccc-CcEEEeccCCCCHHHHHHhhccccC
Confidence 23 5555655555443322 1112 2367777777766666666555554
No 217
>PRK09401 reverse gyrase; Reviewed
Probab=86.32 E-value=5.8 Score=39.60 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=48.3
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhC----CCceEE--EeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHH----GYPVTS--IHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~--~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
..++.+++|.+||+.-+.++.+.+... +..+.. .|++++..++......+..+..+|+|+|+
T Consensus 120 ~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 120 AKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 345678999999999999998888764 334433 35556677888888899989999999995
No 218
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=85.89 E-value=1.2 Score=42.35 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCC
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGY 81 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~ 81 (237)
+++.++.++..+.+.........+.++ +.++...|+..+...+..... ....++|+||+|+..++.+++.|...++
T Consensus 222 l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~---e~g~~vLVF~NTv~~Aq~L~~~L~~~g~ 297 (844)
T TIGR02621 222 RTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMK---DSGGAILVFCRTVKHVRKVFAKLPKEKF 297 (844)
T ss_pred HHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHHHHh---hCCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 456788888877776666677777775 344555566555544432211 1346799999999999999999998887
Q ss_pred CceeecCCcchhhHHHH
Q psy15610 82 PVTSIHGDRTQKEREEA 98 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (237)
..+|+.+.+..|...
T Consensus 298 --~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 298 --ELLTGTLRGAERDDL 312 (844)
T ss_pred --eEeeCCCCHHHHhhH
Confidence 899999999999843
No 219
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.77 E-value=2.8 Score=33.76 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred CCceEEEeCCCCHHHHHHHHHHhhcCC----CCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccc-cCCCCC
Q psy15610 132 GYPVTSIHGDRTQKEREEALRRFRSGE----TPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG-RMGNLD 206 (237)
Q Consensus 132 ~~~~~~~h~~~~~~~r~~~~~~f~~g~----~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~-R~g~~~ 206 (237)
++.+..++++.+... -.+.++. ..|+|.=..+++|+.+....+-.+...+.....++||.-=-| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 688999997765543 3343333 678888899999999999999999998988888888874443 555566
Q ss_pred ceEEeecCCCCC
Q psy15610 207 FPFSYNQPGYGG 218 (237)
Q Consensus 207 ~~~~~~~~~~~~ 218 (237)
.|-+|.++.-..
T Consensus 185 l~Ri~~~~~l~~ 196 (239)
T PF10593_consen 185 LCRIYMPEELYD 196 (239)
T ss_pred ceEEecCHHHHH
Confidence 788877654433
No 220
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=85.53 E-value=1.2 Score=41.12 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHH----hhCCCc
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFL----HHHGYP 134 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~ 134 (237)
+|+||+|+..++.++..|...++++..+|+...+..+... ...+.+.-|.+.|.-.++.+.-.+ .+.| .
T Consensus 476 vLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii------~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~G-G 548 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIV------ARAGQRGRITVATNMAGRGTDIKLEPGVAARG-G 548 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHH------HHcCCCCcEEEEccchhcccCcCCccchhhcC-C
Confidence 8999999999999999999999999999998654444332 122222235566665555543322 1112 2
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 135 VTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 135 ~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
..+++-+++...|.-....=++|+
T Consensus 549 LhVI~~d~P~s~r~y~hr~GRTGR 572 (656)
T PRK12898 549 LHVILTERHDSARIDRQLAGRCGR 572 (656)
T ss_pred CEEEEcCCCCCHHHHHHhcccccC
Confidence 357777787776666655555554
No 221
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=85.53 E-value=3.2 Score=38.33 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=52.6
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
...+||.+|++.-+....+.+...++.+..++++.+.++...+.....+|.++++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 35789999999998888888888899999999999999999888889999999998884
No 222
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=84.75 E-value=1.8 Score=40.50 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=78.7
Q ss_pred EEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCc
Q psy15610 30 AWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEA 109 (237)
Q Consensus 30 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (237)
+...+.+|...+.+.+.... ..+.++|+||+|....+.++..|...+++...+++. +..++.. +....++
T Consensus 383 i~~t~~~k~~ai~~~i~~~~----~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~----ii~~ag~ 452 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERH----AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAE----IIAQAGR 452 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHH----hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHH----HHHhcCC
Confidence 34456678888877664432 357899999999999999999999999999999988 4444433 4444455
Q ss_pred eEEEEeecccchHHHHHHH---hhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 110 LTLVFVETKKGADQLEDFL---HHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 110 ~~iIF~~t~~~~~~l~~~L---~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
+.-|.+.|.-..+.+.-.+ .+.| ...+++-.++.+.|......=++|+
T Consensus 453 ~g~VtIATnmAgRGtDI~l~~V~~~G-Gl~VI~t~~p~s~ri~~q~~GRtGR 503 (745)
T TIGR00963 453 KGAVTIATNMAGRGTDIKLEEVKELG-GLYVIGTERHESRRIDNQLRGRSGR 503 (745)
T ss_pred CceEEEEeccccCCcCCCccchhhcC-CcEEEecCCCCcHHHHHHHhccccC
Confidence 5555555655444433222 2222 3466777777777776666666543
No 223
>KOG0383|consensus
Probab=84.17 E-value=0.52 Score=43.58 Aligned_cols=65 Identities=29% Similarity=0.405 Sum_probs=57.1
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC---CCCEEEEcCccccc
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG---ETPILVATAVAARG 171 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlv~T~~~~~G 171 (237)
..+.+++||..-....+.+++++...+ .+..+.|..+-.+|...+..|+.. .+..|.+|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 347899999999999999999999888 899999999999999999999843 45688999988765
No 224
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=83.77 E-value=1.1 Score=38.29 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=50.0
Q ss_pred CceeEEEEeechhHHHHHHHhhcCchhhh-cccccceeEEeecccchhhHHHHhhhcC--CCceeecCCcchhhHHHH
Q psy15610 24 NITQRIAWVDEQDKRSCLLDLLSSPSQEE-LGDEALTLVFVETKKGADQLEDFLHHHG--YPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 24 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~-~~~~~~~i~f~~t~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 98 (237)
.+.+.+.. ....|...+..++....... ...+.++++|++|+..++.+++.|...+ +.+..+++.+.+..|...
T Consensus 240 ~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 240 PVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred ceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh
Confidence 45555544 33445555544444332111 1245679999999999999999999864 567889999999888755
No 225
>KOG0343|consensus
Probab=83.41 E-value=5.9 Score=35.83 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=67.9
Q ss_pred eeEEeecccchhhHHHHhhh--cCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEe----------------ecccc
Q psy15610 59 TLVFVETKKGADQLEDFLHH--HGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFV----------------ETKKG 120 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~----------------~t~~~ 120 (237)
.|+|..|...+..+++.+.. .|.+...+|+.+.|..|..+...-. ....++.|| -..+.
T Consensus 316 ~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~---~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC 392 (758)
T KOG0343|consen 316 SIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFV---RKRAVVLFCTDVAARGLDFPAVDWVIQVDC 392 (758)
T ss_pred eEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHH---HhcceEEEeehhhhccCCCcccceEEEecC
Confidence 79999999999999999966 6678899999999999877754110 012233333 33444
Q ss_pred hHHHHHHHhhCCCceEEEeCC-----CCHHHHHHHHHHhhcCCCC
Q psy15610 121 ADQLEDFLHHHGYPVTSIHGD-----RTQKEREEALRRFRSGETP 160 (237)
Q Consensus 121 ~~~l~~~L~~~~~~~~~~h~~-----~~~~~r~~~~~~f~~g~~~ 160 (237)
.+.+..|++..|..+.....| +.|.+.+..+..+++..+.
T Consensus 393 Pedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~ 437 (758)
T KOG0343|consen 393 PEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIP 437 (758)
T ss_pred chhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCC
Confidence 567788888877655544444 4577777777777765433
No 226
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=83.39 E-value=2.1 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=30.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
..++++||.+...+...+..|...|+.+..+.||++
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 467899999887888889999999988888999874
No 227
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=83.04 E-value=3.1 Score=39.39 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=78.9
Q ss_pred EEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCc
Q psy15610 30 AWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEA 109 (237)
Q Consensus 30 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (237)
+...+.+|...+.+.+.... ....++|+||+|....+.+++.|...+++...+++...+..+..+. .....+
T Consensus 418 i~~t~~~K~~al~~~i~~~~----~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~----~ag~~g 489 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERH----AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIM----NAGQRG 489 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHH----hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHH----hcCCCc
Confidence 44566789999988885432 2467899999999999999999999999999999987766655442 222233
Q ss_pred eEEEEeecccchHHHHHHH----hhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 110 LTLVFVETKKGADQLEDFL----HHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 110 ~~iIF~~t~~~~~~l~~~L----~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
. |.+.|.-.++.+.-.| .+.| ...+++-.++...|......=++|+
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~G-GLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELG-GLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhC-CcEEEeeecCCcHHHHHHHhhhhcc
Confidence 3 5555544444433222 2222 3466667777766666666555543
No 228
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.09 E-value=1.7 Score=40.36 Aligned_cols=62 Identities=27% Similarity=0.306 Sum_probs=49.1
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..++..|.+-|.... ..+.++++|++|+..++.+++.|...++++..+|+++.+..|.....
T Consensus 425 ~~qi~~Ll~eI~~~~----~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~ 486 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV----ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIR 486 (655)
T ss_pred cchHHHHHHHHHHHH----cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHH
Confidence 346666666555432 34567999999999999999999999999999999998887766644
No 229
>KOG1133|consensus
Probab=81.02 E-value=45 Score=31.29 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=70.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCC-------ceEEEeCCCCHHHHHHHHHHhh----cCCCCEEEEc--CccccccCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGY-------PVTSIHGDRTQKEREEALRRFR----SGETPILVAT--AVAARGLDI 174 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~----~g~~~vlv~T--~~~~~Gvdl 174 (237)
++-+++|.++-+-...+.+.....|+ +..++....+ -+.+++.|. .|.-.+|++- .=+++|+||
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 46799999999988888887765543 3344444444 344555554 4554566664 668899999
Q ss_pred CC--CcEEEEecCCCC----HH----------------------------HHHHhhcccccCCCCCceEEeecCCCC
Q psy15610 175 PH--VKHVINFDLPSD----VE----------------------------EYVHRIGRTGRMGNLDFPFSYNQPGYG 217 (237)
Q Consensus 175 ~~--~~~Vi~~~~p~s----~~----------------------------~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 217 (237)
.+ ++.|+..++|.. ++ ..-|-+|||-|=-.+-.++++++..-.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~ 782 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYA 782 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhc
Confidence 87 667887776541 11 234788888887667777777765443
No 230
>KOG0349|consensus
Probab=80.50 E-value=3.2 Score=36.33 Aligned_cols=42 Identities=33% Similarity=0.704 Sum_probs=35.5
Q ss_pred cceeEEeecccchhhHHHHhhhcC---CCceeecCCcchhhHHHH
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHG---YPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~ 98 (237)
-+.|+||.|+..++.+.+++.+.+ +.|..+|++....+|..-
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHH
Confidence 359999999999999999998766 588999999977776654
No 231
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=80.47 E-value=3 Score=40.47 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=50.8
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHh-hhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFL-HHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+.|...|.++|.... ..++|+||+++..+..+.+.| ...|+++..+|+++.+..|.....
T Consensus 478 d~Ki~~L~~~L~~~~------~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 478 DPRVEWLIDFLKSHR------SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred CHHHHHHHHHHHhcC------CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 457888888887542 457999999999999999999 567999999999999999987754
No 232
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=80.13 E-value=1.9 Score=40.14 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=48.9
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..++..|.+-|.... ..+.++++||+|+..++.+++.|...++++..+|+++.+..|..+..
T Consensus 429 ~~q~~~L~~~L~~~~----~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~ 490 (652)
T PRK05298 429 KGQVDDLLSEIRKRV----AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIR 490 (652)
T ss_pred cccHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHH
Confidence 345666666665432 24567999999999999999999999999999999999887776544
No 233
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=79.95 E-value=3.3 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+..+++++|.+-......+..|...|+.+..+.||+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4578999999988889999999999999888888874
No 234
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=79.50 E-value=3 Score=29.27 Aligned_cols=69 Identities=36% Similarity=0.557 Sum_probs=52.4
Q ss_pred ceeEEEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 25 ITQRIAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 25 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
|.+.|...+ ..|...+.+++..... .+.+.|+|+++...++.+.+.|...+..+..+++......+...
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~----~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLK----KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEV 70 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhccc----CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHH
Confidence 344444433 3688888888776532 45679999999999999999999988899999998887666554
No 235
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=79.28 E-value=2.2 Score=38.58 Aligned_cols=42 Identities=38% Similarity=0.638 Sum_probs=37.6
Q ss_pred eeEEeecccchhhHHHHhhh-cCCCceeecCCcchhhHHHHhh
Q psy15610 59 TLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
+|+|++|+..++.+++.|.. .++.+..+|+.+.+..|..+..
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~ 412 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMK 412 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHH
Confidence 89999999999999999975 6899999999999999887744
No 236
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=78.35 E-value=33 Score=27.54 Aligned_cols=109 Identities=19% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCceEEEEeecc-----------cchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC----CCCEEEEcCccccc
Q psy15610 107 DEALTLVFVETK-----------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG----ETPILVATAVAARG 171 (237)
Q Consensus 107 ~~~~~iIF~~t~-----------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~G 171 (237)
+.+-+||+.+.. ..++.+++.|...|+.+.. +-..+..+-.+.++.|.+. ..+++++. .++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~-~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHV-KNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 346678887763 3689999999999998865 5668888888888888763 24454444 56666
Q ss_pred cCCCCCcEEEEecC-CCCHHHHHHhhcc--ccc-CCCCCceEEeecCCCCCCCCCC
Q psy15610 172 LDIPHVKHVINFDL-PSDVEEYVHRIGR--TGR-MGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 172 vdl~~~~~Vi~~~~-p~s~~~~~Q~~GR--~~R-~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
. .+.++-.|. +.+...+.....- +-- .|.+ -++|+..++++.+...
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kP--KlffiqACRg~~~~~g 134 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKP--KLFFIQACRGDELDGG 134 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhccccCChhhcCCC--cEEEEeCCCCCCCCCC
Confidence 3 366776665 5567777777632 211 2333 5788888887765543
No 237
>KOG0339|consensus
Probab=77.68 E-value=2.6 Score=37.63 Aligned_cols=68 Identities=29% Similarity=0.463 Sum_probs=51.9
Q ss_pred HHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecc
Q psy15610 39 SCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETK 118 (237)
Q Consensus 39 ~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~ 118 (237)
..|...+..-. +|+|+.-+.+.++++..|.-.++.+..+|+++.|..|+..+. .++....-|.+.|.
T Consensus 460 ~~L~~f~S~gk---------vlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls----~fKkk~~~VlvatD 526 (731)
T KOG0339|consen 460 RHLVEFSSEGK---------VLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLS----KFKKKRKPVLVATD 526 (731)
T ss_pred HHhhhhccCCc---------EEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHH----HHhhcCCceEEEee
Confidence 55666666554 899999999999999999999999999999999999998743 33333333444444
Q ss_pred c
Q psy15610 119 K 119 (237)
Q Consensus 119 ~ 119 (237)
-
T Consensus 527 v 527 (731)
T KOG0339|consen 527 V 527 (731)
T ss_pred H
Confidence 3
No 238
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=77.48 E-value=5 Score=37.89 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCC
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDE 108 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (237)
.+.+...+|...+.+.+.... ....++|+||+|...++.+++.|...++++..+++.+.+..+..+.. . +
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~----~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~----a--g 470 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYH----ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAE----A--G 470 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHh----hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHH----c--C
Confidence 456677889999998886531 23568999999999999999999999999999999988777654422 2 2
Q ss_pred ceEEEEeecccchHHHHH
Q psy15610 109 ALTLVFVETKKGADQLED 126 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~ 126 (237)
.+.-|.+.|.-.++.+.-
T Consensus 471 ~~g~VlIATdmAgRGtDI 488 (762)
T TIGR03714 471 QKGAVTVATSMAGRGTDI 488 (762)
T ss_pred CCCeEEEEccccccccCC
Confidence 332355566555555433
No 239
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=77.03 E-value=11 Score=37.88 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=57.0
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeec------hhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHH
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDE------QDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDF 75 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~ 75 (237)
+++.|...|+ |.+.. ....++..|..... .++...+.+.+..... ...+.+++|+++...++.+++.
T Consensus 226 fa~~F~~apv-I~V~G---r~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~---~~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 226 FSRHFNNAPI-IEVSG---RTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA---EGPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred HHHHhcCCCE-EEECC---CcccceeEEecccccccchhhhHHHHHHHHHHHHHh---hCCCCEEEeCCCHHHHHHHHHH
Confidence 3455544553 44431 22345666654432 1344555555443221 1346799999999999999999
Q ss_pred hhhcCC---CceeecCCcchhhHHHHh
Q psy15610 76 LHHHGY---PVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 76 l~~~~~---~~~~~~~~~~~~~~~~~~ 99 (237)
|...++ .+..+|+.+.+..+..++
T Consensus 299 L~~~~~~~~~VlpLhg~Ls~~eQ~~vf 325 (1283)
T TIGR01967 299 LRKRNLRHTEILPLYARLSNKEQQRVF 325 (1283)
T ss_pred HHhcCCCCcEEEeccCCCCHHHHHHHh
Confidence 988754 356789999998887763
No 240
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=76.81 E-value=4.9 Score=38.51 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=55.7
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
.+.....+|...+.+.+... ...+.|+|+||+|....+.++..|...+++...+++...+..+..+
T Consensus 421 ~v~~t~~~k~~av~~~i~~~----~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~ii 486 (896)
T PRK13104 421 LVYLTQADKFQAIIEDVREC----GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQII 486 (896)
T ss_pred eEEcCHHHHHHHHHHHHHHH----HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHH
Confidence 34556778998888776543 2457899999999999999999999999999999999998888866
No 241
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=76.50 E-value=13 Score=31.09 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=50.8
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHH-------------HhhcC--CCCEEEEcCc-cccc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALR-------------RFRSG--ETPILVATAV-AARG 171 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~-------------~f~~g--~~~vlv~T~~-~~~G 171 (237)
+..++|.+...+..+.++.+|.-.++.+..+.|.+...+....-. .-..+ ...|-++|.. +...
T Consensus 117 ~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~ 196 (297)
T PF11496_consen 117 PLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNN 196 (297)
T ss_dssp SEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TT
T ss_pred CceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCcccccc
Confidence 468999999999999999999998888989988776655554431 11112 2334444433 3221
Q ss_pred ----cCCCCCcEEEEecCCCCH-HHHHHhhcccccCCCCCceEEeec
Q psy15610 172 ----LDIPHVKHVINFDLPSDV-EEYVHRIGRTGRMGNLDFPFSYNQ 213 (237)
Q Consensus 172 ----vdl~~~~~Vi~~~~p~s~-~~~~Q~~GR~~R~g~~~~~~~~~~ 213 (237)
..-..++.||.+|+-.++ ...+|++-..+|.+..--.+.++.
T Consensus 197 ~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~ 243 (297)
T PF11496_consen 197 KPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVP 243 (297)
T ss_dssp TS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEE
T ss_pred CCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEee
Confidence 223356889999986532 234566544444332233344433
No 242
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=76.28 E-value=11 Score=27.75 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=49.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCHH-HHHHHHHHhhcCCCCEEEEcCc------cccccCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQK-EREEALRRFRSGETPILVATAV------AARGLDIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~-~r~~~~~~f~~g~~~vlv~T~~------~~~Gvdl~~ 176 (237)
..++++.+|++..++.+.+.+... +..+..++++.+.. +....+ .+..+|+|+|.. .....++..
T Consensus 44 ~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~ 119 (169)
T PF00270_consen 44 DARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISR 119 (169)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTT
T ss_pred CceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhcccccccccccc
Confidence 458999999999988888777654 45788899988854 222222 677899999942 222346666
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
.++||.
T Consensus 120 ~~~iVi 125 (169)
T PF00270_consen 120 LSLIVI 125 (169)
T ss_dssp ESEEEE
T ss_pred ceeecc
Confidence 666664
No 243
>PRK13766 Hef nuclease; Provisional
Probab=75.80 E-value=11 Score=35.95 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=50.5
Q ss_pred CceEEEEeecccchHHHHHHHhhC-C---CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc------cccccCCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-G---YPVTSIHGDRTQKEREEALRRFRSGETPILVATAV------AARGLDIPHV 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gvdl~~~ 177 (237)
+.+++|.|||...+.+..+.+... + ..+..++|+.+..+|..... ..+|+|+|+- ...-+++..+
T Consensus 58 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~ 132 (773)
T PRK13766 58 GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDV 132 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 578999999999888777777653 3 37888999999988765443 3578999852 2233455667
Q ss_pred cEEEEec
Q psy15610 178 KHVINFD 184 (237)
Q Consensus 178 ~~Vi~~~ 184 (237)
+++|.=+
T Consensus 133 ~liVvDE 139 (773)
T PRK13766 133 SLLIFDE 139 (773)
T ss_pred cEEEEEC
Confidence 7766533
No 244
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=75.31 E-value=41 Score=27.01 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=72.8
Q ss_pred CceEEEEeec------------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc---CCCCEEEEcCcccccc
Q psy15610 108 EALTLVFVET------------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS---GETPILVATAVAARGL 172 (237)
Q Consensus 108 ~~~~iIF~~t------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~~Gv 172 (237)
.+.++|+.+. ...++.+++.|+..|+.+. ++...+..+-.+.++.|.+ .....+++- .++.|.
T Consensus 9 ~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~ 86 (243)
T cd00032 9 RGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGE 86 (243)
T ss_pred CCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCC
Confidence 4667777774 2458899999999999876 4667888888888888875 223333332 455665
Q ss_pred CCCCCcEEEEec-CCCCHHHHHHhhc--cccc-CCCCCceEEeecCCCCCCCCCC
Q psy15610 173 DIPHVKHVINFD-LPSDVEEYVHRIG--RTGR-MGNLDFPFSYNQPGYGGSYGGS 223 (237)
Q Consensus 173 dl~~~~~Vi~~~-~p~s~~~~~Q~~G--R~~R-~g~~~~~~~~~~~~~~~~~~~~ 223 (237)
. +.++-.| .+.+...+.+... ++-- .|.+ -++|+..++++.+...
T Consensus 87 ~----~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kP--Kl~~iqACRg~~~~~~ 135 (243)
T cd00032 87 E----GGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP--KLFFIQACRGDELDLG 135 (243)
T ss_pred C----CEEEEecCcEEEHHHHHHhhccCCCccccCCC--cEEEEECCCCCcCCCc
Confidence 4 6677777 5567788887775 3322 2333 4788888888777654
No 245
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=74.34 E-value=5.5 Score=26.20 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=32.1
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
.+...+++||.+...+..++..|...|+. +..+.|++..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 34678999998888888999999998887 8888888743
No 246
>KOG0350|consensus
Probab=73.68 E-value=10 Score=33.86 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=52.8
Q ss_pred CceEEEEeecccchHHHHHHHhhC----CCceEEEeCCCCH-HHHHHHHHHhhcCCCCEEEEcCc-------cccccCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH----GYPVTSIHGDRTQ-KEREEALRRFRSGETPILVATAV-------AARGLDIP 175 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~-~~r~~~~~~f~~g~~~vlv~T~~-------~~~Gvdl~ 175 (237)
--+++|.++++.-+-++++.+... |..+....|.-+- .+-.+....-....++|||+|+- ...|+++.
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk 294 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLK 294 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchh
Confidence 357999999999999998888765 5556666554442 33334444444456799999962 36789999
Q ss_pred CCcEEEE
Q psy15610 176 HVKHVIN 182 (237)
Q Consensus 176 ~~~~Vi~ 182 (237)
...+.|.
T Consensus 295 ~LrfLVI 301 (620)
T KOG0350|consen 295 HLRFLVI 301 (620)
T ss_pred hceEEEe
Confidence 9887664
No 247
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=73.67 E-value=15 Score=26.73 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=33.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
+.+++|+|++.+.++.+.+.|=...-...+-|+-.... ......|+|+++... -..+..+++|+.+..
T Consensus 29 g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~~~~~~vLinL~~~ 96 (137)
T PF04364_consen 29 GQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NPNNHADVLINLSGE 96 (137)
T ss_dssp T--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS------S--SEEEE--SS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CCCCCCCEEEECCCC
Confidence 68899999999999999999855444445555531110 112247888886532 122336788887653
No 248
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=73.54 E-value=7.2 Score=37.23 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=61.7
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCC
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDE 108 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (237)
.+...+.+|..++.+.+.... ....|+|+||+|....+.++..|...+++...+++. +..++.. +..+.+
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~----~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~----Iia~Ag 476 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERH----KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAE----IIAQAG 476 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHH----hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHH----HHHhcC
Confidence 445567789999999885531 246789999999999999999999999999999995 4444433 444445
Q ss_pred ceEEEEeecccchHH
Q psy15610 109 ALTLVFVETKKGADQ 123 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~ 123 (237)
++.-|.+.|.-..+.
T Consensus 477 ~~g~VtIATNmAGRG 491 (830)
T PRK12904 477 RPGAVTIATNMAGRG 491 (830)
T ss_pred CCceEEEecccccCC
Confidence 555555555544443
No 249
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=73.37 E-value=6.3 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=30.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+..+++++|.+...+...+..|...|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 356799999998888888888988887 5788888863
No 250
>PRK09694 helicase Cas3; Provisional
Probab=73.37 E-value=6.1 Score=38.11 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=38.7
Q ss_pred cccceeEEeecccchhhHHHHhhhcC---CCceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHG---YPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~ 100 (237)
.+.++++|+||...++++++.|.... .++..+|+.+....|.....
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~ 607 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQ 607 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHH
Confidence 35679999999999999999998765 57899999999888865554
No 251
>KOG0334|consensus
Probab=72.89 E-value=4 Score=39.29 Aligned_cols=108 Identities=23% Similarity=0.263 Sum_probs=68.8
Q ss_pred echhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEE
Q psy15610 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTL 112 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 112 (237)
++-.|+..|+........ +|+||.....+..+.+.|...++.+..+|++..|..|... +..++...+.
T Consensus 598 eKf~kL~eLl~e~~e~~~--------tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~st----i~dfK~~~~~ 665 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGK--------TIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSST----IEDFKNGVVN 665 (997)
T ss_pred HHHHHHHHHHHHHhhcCC--------EEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhH----HHHHhccCce
Confidence 444555555544433222 8999999999999999999999999999999999999887 4445556666
Q ss_pred EEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 113 VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
+...|...++.+ .-.. -..++|-+.+.....-+-+.-++|
T Consensus 666 LLvaTsvvarGL----dv~~-l~Lvvnyd~pnh~edyvhR~gRTg 705 (997)
T KOG0334|consen 666 LLVATSVVARGL----DVKE-LILVVNYDFPNHYEDYVHRVGRTG 705 (997)
T ss_pred EEEehhhhhccc----cccc-ceEEEEcccchhHHHHHHHhcccc
Confidence 666665533322 1111 123355555544444444444444
No 252
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=72.29 E-value=10 Score=38.75 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=51.8
Q ss_pred CceEEEEeecccchHHHHHHHhh----------------CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc----
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH----------------HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV---- 167 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~----------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~---- 167 (237)
+.++|+.+|+++-+..+.+.|+. .++.+...||+++..+|.+.++ ...+|||+|+.
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 46899999999988887776642 3678899999999998876433 45789999953
Q ss_pred -cc-cc-cCCCCCcEEEE
Q psy15610 168 -AA-RG-LDIPHVKHVIN 182 (237)
Q Consensus 168 -~~-~G-vdl~~~~~Vi~ 182 (237)
+. .+ ..+.++++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 12 25677888775
No 253
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=72.19 E-value=9.2 Score=37.14 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=77.2
Q ss_pred EEEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCC
Q psy15610 29 IAWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDE 108 (237)
Q Consensus 29 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (237)
.+.....+|...+.+.+.... ..+.++|+||+|+...+.+++.|...+++...++. .+..++.. +....+
T Consensus 575 ~vy~t~~eK~~Ali~~I~~~~----~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~----Iia~AG 644 (1025)
T PRK12900 575 LVYKTRREKYNAIVLKVEELQ----KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAE----IVAEAG 644 (1025)
T ss_pred eEecCHHHHHHHHHHHHHHHh----hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHH----HHHhcC
Confidence 344566789999999886542 23678999999999999999999999999999996 34444333 455555
Q ss_pred ceEEEEeecccchHHHHHHHh----hCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 109 ALTLVFVETKKGADQLEDFLH----HHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
++.-|.+.|.-.++.+.--|. ..| ...+++...+.+.|.-....=++|
T Consensus 645 ~~g~VtIATNMAGRGtDIkl~~~V~~vG-GL~VIgterhes~Rid~Ql~GRtG 696 (1025)
T PRK12900 645 QKGAVTIATNMAGRGTDIKLGEGVRELG-GLFILGSERHESRRIDRQLRGRAG 696 (1025)
T ss_pred CCCeEEEeccCcCCCCCcCCccchhhhC-CceeeCCCCCchHHHHHHHhhhhh
Confidence 666666666655555433321 111 234555556665555554444443
No 254
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=72.07 E-value=6.6 Score=26.24 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=29.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
+.+++++|.+-..+...+..|...|+.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 467999999988888888889888988777888763
No 255
>PRK13767 ATP-dependent helicase; Provisional
Probab=71.19 E-value=5.5 Score=38.51 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=37.8
Q ss_pred ccceeEEeecccchhhHHHHhhhc------CCCceeecCCcchhhHHHHhh
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHH------GYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~ 100 (237)
..++|+||+|+..++.++..|... +..+...|+.+.+..|..+..
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 356999999999999999998763 457888999999999887755
No 256
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=71.12 E-value=13 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=28.8
Q ss_pred CceEEEEeec-ccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 108 EALTLVFVET-KKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t-~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
...+++||.+ ...+......|...|+. +..+.|++.
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 5678999988 47787888888888865 778888874
No 257
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=70.94 E-value=29 Score=31.16 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=52.8
Q ss_pred CceEEEEeecccchHHHHHHHhhC-CC---ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC-----ccccc-cCCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH-GY---PVTSIHGDRTQKEREEALRRFRSGETPILVATA-----VAARG-LDIPHV 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-vdl~~~ 177 (237)
++++|+.+||+.-+.+.+..+.+. ++ .+..+.|+.++++|...+. ..+|+|+|+ .+-.| +|+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHc
Confidence 448999999999888888887653 44 4779999999999986654 357899985 23334 477777
Q ss_pred cEEEE
Q psy15610 178 KHVIN 182 (237)
Q Consensus 178 ~~Vi~ 182 (237)
.++|+
T Consensus 133 ~~lif 137 (542)
T COG1111 133 SLLIF 137 (542)
T ss_pred eEEEe
Confidence 77775
No 258
>KOG0337|consensus
Probab=70.51 E-value=5.8 Score=34.60 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=53.6
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHH
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFL 128 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L 128 (237)
.++|++|++.++.+...+...++.+..+.+.+.+.-|..- +..+...+.-+.+.|+-.++.+..-+
T Consensus 264 t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~----~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 264 TIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKIN----GRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred eeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhc----cccccCCccceEEEehhhhccCCCcc
Confidence 7999999999999999999999999999999999887744 44555677777777777776664433
No 259
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=70.14 E-value=6.1 Score=27.90 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=32.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC--ceEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY--PVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~~h~~~~~ 144 (237)
+..+++++|.+...+...+..|...|+ .+..+.||+..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 457899999998888889999999999 58899998743
No 260
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=69.64 E-value=11 Score=36.23 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=45.5
Q ss_pred cCCceEEEEeeccc----chHHHHHHHhhCC--CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 106 CDEALTLVFVETKK----GADQLEDFLHHHG--YPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 106 ~~~~~~iIF~~t~~----~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
.+..++|++-||++ +.+.+.+++...+ +.+..|+|+.++++|+ .+..+..+||+|+..
T Consensus 113 ~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpd 176 (851)
T COG1205 113 DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPD 176 (851)
T ss_pred CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHH
Confidence 34557899999977 5556667776665 7899999999999987 566688999999853
No 261
>PHA02558 uvsW UvsW helicase; Provisional
Probab=69.54 E-value=7.8 Score=34.84 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
+...++|+.....++.+++.|...+.++..+++.+.+..|...
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i 386 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEM 386 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 3557777778889999999999999999999999999988865
No 262
>KOG0345|consensus
Probab=68.44 E-value=14 Score=32.82 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=50.3
Q ss_pred eEEEEeecccchHHHHHHHhh-----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC-----cccc---ccCCCC
Q psy15610 110 LTLVFVETKKGADQLEDFLHH-----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA-----VAAR---GLDIPH 176 (237)
Q Consensus 110 ~~iIF~~t~~~~~~l~~~L~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~---Gvdl~~ 176 (237)
-++|.+||++-+.++...+.. ..+++..+-||.+.++ -++.|++...+|+|+|+ ++.+ ++++-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 589999999998888665532 2567788888876654 45788888999999995 3443 455556
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
+.++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 666553
No 263
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=67.88 E-value=10 Score=36.46 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=54.4
Q ss_pred EEeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHH
Q psy15610 30 AWVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 30 ~~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (237)
+.....+|...+.+-+.... ..+.++|+||.|....+.++..|...+++...+++...+..+..+
T Consensus 427 iy~t~~~K~~Aii~ei~~~~----~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii 491 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCR----ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIV 491 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHH----HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHH
Confidence 44556788888887665442 357899999999999999999999999999999999988888766
No 264
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=67.26 E-value=7.1 Score=26.38 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=29.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++|+|.+-......+..|...|+. +..+.||+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4568999999887778888889888884 777888764
No 265
>KOG0336|consensus
Probab=66.94 E-value=5.6 Score=34.64 Aligned_cols=57 Identities=32% Similarity=0.426 Sum_probs=49.0
Q ss_pred eeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeeccc
Q psy15610 59 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKK 119 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~ 119 (237)
+|+|+..+.-++++..-|.-.|+....+|+...|..|+.+ +...+.+.+-|.+.|.-
T Consensus 468 vIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~a----l~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 468 VIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMA----LEDFKSGEVRILVATDL 524 (629)
T ss_pred EEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHH----HHhhhcCceEEEEEech
Confidence 8999999999999999999999999999999999999877 44455666777777754
No 266
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=66.78 E-value=11 Score=25.97 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.0
Q ss_pred CCceEEEEeeccc--chHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 107 DEALTLVFVETKK--GADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~--~~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
+..+++++|.+.. .+..++..|...|+++..+.|++..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 4578999998763 6778888888889988888888743
No 267
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=66.44 E-value=12 Score=25.08 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+..+++++|.+-..+...+..|.+.|+ .+..+.|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 356899999998888888888988777 5777888763
No 268
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=66.09 E-value=9.6 Score=26.17 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc--eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP--VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~--~~~~h~~~~~ 144 (237)
+..++++||.+.......+..|...|+. +..+.|+++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3568999999988777788899999984 7888898743
No 269
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=65.85 E-value=7.4 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++|||.+...+...+..|...|+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3578999998877788888889888876 778888764
No 270
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=65.26 E-value=25 Score=24.32 Aligned_cols=56 Identities=29% Similarity=0.328 Sum_probs=40.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCC---CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHG---YPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
..+++++|++...+..+.+.+.... ..+..++++....... ........++++|..
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 5789999999999888877776543 7788888876665544 222356788888864
No 271
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=64.52 E-value=36 Score=24.95 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=39.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEE-cCccccccCCCCCcEEEEecC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVA-TAVAARGLDIPHVKHVINFDL 185 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~-T~~~~~Gvdl~~~~~Vi~~~~ 185 (237)
+.+++|+|++.+.++.+.+.|=...-...+-|+-.... ......|+++ ++. -+.+..+++|+.+.
T Consensus 29 g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~----~~~~~~~~LinL~~ 94 (142)
T PRK05728 29 GWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGK----RNANHRDLLINLDG 94 (142)
T ss_pred CCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCC----CCCCCCcEEEECCC
Confidence 68999999999999999999854433444555521110 0124568877 221 13344566776653
No 272
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=64.35 E-value=11 Score=26.81 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCceEEEEee-cccchHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 107 DEALTLVFVE-TKKGADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~-t~~~~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
+..+++|||. +-..+......|...|+.+..+.||++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4578999997 4566777778888889999999998754
No 273
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=64.21 E-value=12 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..+++++|.+...+......|...|+. +..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 3568999999988888888888888884 7788888654
No 274
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=63.70 E-value=16 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDR 142 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~ 142 (237)
+..+++++|.+-..+..+...|...|+ ++..+.|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 356899999987778888888988887 477778776
No 275
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=63.61 E-value=98 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=26.2
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
.+++++++|... +-.+++++...|..+.++-.+++.
T Consensus 219 ~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 219 KRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 578888888663 334588888888888888777654
No 276
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=62.49 E-value=17 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=29.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
..+++++|.+...+...+..|...|+. +..+.||++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 467889998877888888889888885 778888874
No 277
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=61.83 E-value=16 Score=35.11 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHHhhcceeEEEeeccCCCCCceeEEEEeechhHHH-----HHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh
Q psy15610 4 KEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKRS-----CLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 4 ~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
.+|+.++..|.+. + ....|++.|..++..++.. .+..++.. ....+|+|+++...++.+++.|..
T Consensus 165 ~~~~~~~~~I~~~--g-r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-------~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 165 QQLLPDAPVIVSE--G-RSFPVERRYQPLPAHQRFDEAVARATAELLRQ-------ESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred HHhcCCCCEEEec--C-ccccceEEeccCchhhhHHHHHHHHHHHHHHh-------CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 4567766666543 2 2345888887776666553 33333322 246799999999999999999986
Q ss_pred ---cCCCceeecCCcchhhHHHHh
Q psy15610 79 ---HGYPVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~ 99 (237)
.++.+..+|+.+.+..+....
T Consensus 235 ~~~~~~~v~~Lhg~l~~~eq~~~~ 258 (812)
T PRK11664 235 RVASDVLLCPLYGALSLAEQQKAI 258 (812)
T ss_pred hccCCceEEEeeCCCCHHHHHHHh
Confidence 577888899999998877663
No 278
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=61.70 E-value=16 Score=35.06 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=59.7
Q ss_pred HHHhhcceeEEEeeccCCCCCceeEEEEeechhHH-----HHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhh
Q psy15610 4 KEFLYRYIFLAIGRVGSTSENITQRIAWVDEQDKR-----SCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHH 78 (237)
Q Consensus 4 ~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~ 78 (237)
.+|+.++..|.+.. ....++++|..+...+++ ..+..++.. ....+|+|+++...++.+++.|..
T Consensus 162 ~~~l~~~~vI~~~g---r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-------~~g~iLVFlpg~~eI~~l~~~L~~ 231 (819)
T TIGR01970 162 SSLLPDAPVVESEG---RSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-------ETGSILVFLPGQAEIRRVQEQLAE 231 (819)
T ss_pred HHHcCCCcEEEecC---cceeeeeEEeecchhhhHHHHHHHHHHHHHHh-------cCCcEEEEECCHHHHHHHHHHHHh
Confidence 46676665665432 234578888776655543 233333322 245699999999999999999987
Q ss_pred ---cCCCceeecCCcchhhHHHHh
Q psy15610 79 ---HGYPVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~ 99 (237)
.++.+..+|+.+.+..+..++
T Consensus 232 ~~~~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 232 RLDSDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred hcCCCcEEEEecCCCCHHHHHHHH
Confidence 478888999999998887764
No 279
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=61.18 E-value=9.7 Score=25.81 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++++||.+...+...+..|...|+. +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 3568999999988888888999888874 677777763
No 280
>KOG0346|consensus
Probab=60.58 E-value=11 Score=33.16 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=45.8
Q ss_pred CceEEEEeecccchHHHHHHHhhC------CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cccccC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH------GYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AARGLD 173 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~Gvd 173 (237)
+..++|.+||++-|++++..+.+. .+++.-+.++|+.+... ..-.+...|+|+|+. +..|+.
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccc
Confidence 567999999999999998888764 45566667777776554 334567899999963 555653
No 281
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=60.52 E-value=15 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++++|.+...+...+..|...|+. +..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4578999999888899999999998874 677777753
No 282
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=59.76 E-value=22 Score=34.85 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=38.9
Q ss_pred hhcCCCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 154 FRSGETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 154 f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
..+..+++||.++.+-.|+|-|.+++ +..|-|.-.-.++|.+-|+.|.
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccC
Confidence 34567899999999999999998765 4456666566788999999994
No 283
>KOG0329|consensus
Probab=59.35 E-value=17 Score=29.75 Aligned_cols=70 Identities=29% Similarity=0.357 Sum_probs=49.2
Q ss_pred CceEEEEeecccchHHHHHHHhh-C----CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC------ccccccCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH-H----GYPVTSIHGDRTQKEREEALRRFRSGETPILVATA------VAARGLDIPH 176 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~-~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gvdl~~ 176 (237)
.-.++|.|.|++.+-++...... . +..+.+..||++...-+..++. -..|+|+|+ +-.+.+++.+
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhh
Confidence 34789999999988888655433 1 6678999999988766544443 677899996 2344567777
Q ss_pred CcEEE
Q psy15610 177 VKHVI 181 (237)
Q Consensus 177 ~~~Vi 181 (237)
+.+-+
T Consensus 186 vkhFv 190 (387)
T KOG0329|consen 186 VKHFV 190 (387)
T ss_pred cceee
Confidence 66544
No 284
>PRK02362 ski2-like helicase; Provisional
Probab=58.60 E-value=13 Score=35.28 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=34.4
Q ss_pred cccceeEEeecccchhhHHHHhhhcC------------------------------------CCceeecCCcchhhHHHH
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHG------------------------------------YPVTSIHGDRTQKEREEA 98 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 98 (237)
.+.++|+||+|+..++.++..+.... ..+-..|+.+.+..|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 35679999999999999888886532 134566888888888766
Q ss_pred hh
Q psy15610 99 QQ 100 (237)
Q Consensus 99 ~~ 100 (237)
..
T Consensus 322 e~ 323 (737)
T PRK02362 322 ED 323 (737)
T ss_pred HH
Confidence 44
No 285
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=58.53 E-value=11 Score=36.65 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred CCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccC
Q psy15610 158 ETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 202 (237)
Q Consensus 158 ~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 202 (237)
..+.+++-.++.+|-|-|++-.+..+....|...-.|.+||..|+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 567899999999999999999988888888888899999999995
No 286
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=58.43 E-value=73 Score=23.57 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=36.8
Q ss_pred EEEEeec-------ccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 111 TLVFVET-------KKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 111 ~iIF~~t-------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
++||+.+ -..+..+..+|...++.+..+.=+|.++.++.+.+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 5677665 67899999999999999999988888888877766554
No 287
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=57.86 E-value=12 Score=35.76 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=44.6
Q ss_pred CCCEEEEcCccccccCCCCCcEEEEecCCCCHHHHHHhhcccccCC--CCCceE
Q psy15610 158 ETPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG--NLDFPF 209 (237)
Q Consensus 158 ~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g--~~~~~~ 209 (237)
..+.+++--++-+|-|-|++-.+.-+....|-..=+|.+||..|.. +.|.-+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV 536 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERV 536 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeecccccee
Confidence 4678899999999999999999999999999999999999999954 444433
No 288
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=57.61 E-value=29 Score=33.78 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=42.1
Q ss_pred CceEEEEeecccchHHHHHHHhh----CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH----HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
+..++|.++|+.-+.+.++.+.. .|+.+..+.|+++..++... + ..+|+++|+-
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~---y---~~DIVygTPg 192 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI---Y---QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH---c---CCCEEEECCC
Confidence 34588899999988888777754 47889999999999887643 3 3789999953
No 289
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=56.42 E-value=33 Score=24.93 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=23.0
Q ss_pred CceEEEEeec---ccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 108 EALTLVFVET---KKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t---~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
..++|+||.+ ...+-.+.=.|+..|. ++.++.|+++
T Consensus 95 ~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 95 DKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 5789999975 2334444445555565 4778888764
No 290
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=55.31 E-value=21 Score=23.59 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=26.5
Q ss_pred CceEEEEeecc--cchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 108 EALTLVFVETK--KGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~--~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
..+++++|.+- ..+...+..|...|+ ++..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 56899999983 336677778888876 5777888764
No 291
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=55.28 E-value=36 Score=26.47 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=46.7
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHH--------HHHHHHHhhcCCC-CEEEEcCccccc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE--------REEALRRFRSGET-PILVATAVAARG 171 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------r~~~~~~f~~g~~-~vlv~T~~~~~G 171 (237)
..+.|..+.+.+.+..+++.-...| .+.++||-++|-+ ...++++..++.+ -|+++|+.-.+|
T Consensus 78 d~~~icVVe~p~Dv~a~E~~~~f~G-~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 78 DKSQLCVVEEPKDVLALEKTGEFRG-LYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred CCceEEEEcchHHHHHHHHhcccCe-eEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 4568888999998888888776666 6778887766533 4556777788887 799999765555
No 292
>KOG0352|consensus
Probab=55.19 E-value=23 Score=31.24 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=59.4
Q ss_pred cceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhh----------ccC---CceEEEEeecccchHH
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLI----------SCD---EALTLVFVETKKGADQ 123 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~iIF~~t~~~~~~ 123 (237)
+=-|++|-|+..+|+++-.+...|+++...|..+...+|+.++..=+. ++. ..+.+=|+.-......
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhh
Confidence 457999999999999999999999999999999999999988872111 111 2334556666667888
Q ss_pred HHHHHhhCC
Q psy15610 124 LEDFLHHHG 132 (237)
Q Consensus 124 l~~~L~~~~ 132 (237)
++.|.++.|
T Consensus 336 ~AgYYQESG 344 (641)
T KOG0352|consen 336 LAGYYQESG 344 (641)
T ss_pred hHHHHHhcc
Confidence 899988764
No 293
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=53.52 E-value=99 Score=23.61 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=38.8
Q ss_pred ceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
.++-++-.+...++.+++.|++. ++.+...||-.++++...+.+..++...++++
T Consensus 49 ~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 49 LPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 34444555566778888888765 66666668999888888888888876666543
No 294
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=52.92 E-value=27 Score=33.13 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=45.1
Q ss_pred cccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhh
Q psy15610 53 LGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLI 104 (237)
Q Consensus 53 ~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (237)
.....++++++||...+.++++.+...+..+..+|+.+....|.........
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~ 488 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKK 488 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHH
Confidence 4567899999999999999999999998889999999999998877664443
No 295
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=52.22 E-value=28 Score=29.29 Aligned_cols=37 Identities=24% Similarity=0.087 Sum_probs=29.3
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++++||.+-..+-.+.-.|+..|+. +..|.|++.
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 4568999999987777777777778875 788998764
No 296
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=52.15 E-value=66 Score=21.21 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.9
Q ss_pred CceEEEEee------cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHH
Q psy15610 108 EALTLVFVE------TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALR 152 (237)
Q Consensus 108 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 152 (237)
..+++||+. .-..|..+.++|...++.+..+.=...++.+..+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 578999976 456788999999999998888875555544444433
No 297
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=52.12 E-value=31 Score=22.00 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=29.8
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
.+..+++++|.+...+..++..|...|. ++..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3467899999998888999999998864 4667777763
No 298
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=52.06 E-value=27 Score=24.39 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..+++++|.+-..+...+..|...|+. +..+.|++..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4577999999988888899999998875 5567777653
No 299
>KOG0389|consensus
Probab=51.49 E-value=84 Score=30.07 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhC--CCceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEcCcccc
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHH--GYPVTSIHGDRTQKEREEALRRFRSG--ETPILVATAVAAR 170 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~ 170 (237)
..++=+|.||+.- .+.+.+.+++. .+.+..|||+ +.+|..+-..+.++ .++||++|--+..
T Consensus 447 ~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 447 NPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred CCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 3567788888743 44444444443 6788999995 58888888888766 7889999954443
No 300
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=51.07 E-value=55 Score=31.46 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcC-CCceeecCCcchhhHHHHhhhhhhccCCceEEEEe
Q psy15610 37 KRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHG-YPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFV 115 (237)
Q Consensus 37 k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~ 115 (237)
....+.++++++ ...++|+||+..+|.++..|...+ ..+..-|+.++...|..+..... .+.-+++|-+
T Consensus 242 ~~~~i~~~v~~~--------~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk--~G~lravV~T 311 (814)
T COG1201 242 LYERIAELVKKH--------RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLK--EGELKAVVAT 311 (814)
T ss_pred HHHHHHHHHhhc--------CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHh--cCCceEEEEc
Confidence 445555666554 258999999999999999999988 67778888888888877755322 1234565555
Q ss_pred eccc
Q psy15610 116 ETKK 119 (237)
Q Consensus 116 ~t~~ 119 (237)
.|-+
T Consensus 312 SSLE 315 (814)
T COG1201 312 SSLE 315 (814)
T ss_pred cchh
Confidence 5543
No 301
>PHA03371 circ protein; Provisional
Probab=50.97 E-value=12 Score=29.67 Aligned_cols=53 Identities=32% Similarity=0.384 Sum_probs=31.2
Q ss_pred cccccCCCCCcEE-EEecCC-------------CCHHHHHHhhcccccCCCCCceEEeecCCCCCCCC
Q psy15610 168 AARGLDIPHVKHV-INFDLP-------------SDVEEYVHRIGRTGRMGNLDFPFSYNQPGYGGSYG 221 (237)
Q Consensus 168 ~~~Gvdl~~~~~V-i~~~~p-------------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 221 (237)
.++-||+|.=+-+ |..+.+ .+--.++|.+|||.-.|...+.++|...+ ...|+
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~r~-~sVyG 96 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLSRN-GSVYG 96 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEccC-CeEEe
Confidence 4555666665554 433332 25557789999999888555554444443 44443
No 302
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.75 E-value=1.1e+02 Score=23.15 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=41.3
Q ss_pred CceEEEEeecccchHHHHHHHhhC--CCceE-EEeCCCCHHHHHHHHHHhhcCCCCEEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH--GYPVT-SIHGDRTQKEREEALRRFRSGETPILVA 164 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 164 (237)
+.++-++-.+...++.+++.|++. ++.+. .+|+-+++++.+.+++..++...++++.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 345555566666788888888876 66665 4556688899999999998877776544
No 303
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=50.46 E-value=1.7e+02 Score=26.80 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=42.7
Q ss_pred cccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
.+.++++-+=|+.=+|++.++|...|+.+.++|++...-.|..++.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIir 490 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIR 490 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHH
Confidence 4578999999999999999999999999999999999999988877
No 304
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=50.16 E-value=77 Score=21.36 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=33.6
Q ss_pred CceEEEEee------cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHH
Q psy15610 108 EALTLVFVE------TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRR 153 (237)
Q Consensus 108 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 153 (237)
.++++||.. .-..|..+.++|...++++..+.=...++.+..+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 578999974 4667889999999999988877655455555544433
No 305
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=49.91 E-value=27 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=28.4
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 143 (237)
..+++++|.+-..+...+..|...|+......|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457999999988888889999888887555567654
No 306
>KOG0348|consensus
Probab=49.57 E-value=25 Score=31.93 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=48.4
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhCCCceEEE-eCCCCHHHHHHHHHHhhcCCCCEEEEcCc-------cccccCCCC
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHHGYPVTSI-HGDRTQKEREEALRRFRSGETPILVATAV-------AARGLDIPH 176 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~-h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-------~~~Gvdl~~ 176 (237)
..++.-++|.++|++-|-++++.++++--++..+ -|.+-=.++.+.+++--...++|||+|+- -...+++..
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 3456779999999999999999988763332221 11111122334444333356899999961 334566777
Q ss_pred CcEEEE
Q psy15610 177 VKHVIN 182 (237)
Q Consensus 177 ~~~Vi~ 182 (237)
..++|.
T Consensus 288 LRwlVl 293 (708)
T KOG0348|consen 288 LRWLVL 293 (708)
T ss_pred eeEEEe
Confidence 777775
No 307
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=49.48 E-value=44 Score=23.45 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=40.2
Q ss_pred hhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHH
Q psy15610 69 ADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKERE 148 (237)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 148 (237)
...+.++|...|++++-++.....-.......-.......-..++++-..+.+..+-+.+...|.+...++.+ ...+
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~ 92 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESE 92 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--H
T ss_pred HHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHH
Confidence 4566777777776666665554332221111111111112234444444444445555555668888888888 3334
Q ss_pred HHHHHhhcCCCCE
Q psy15610 149 EALRRFRSGETPI 161 (237)
Q Consensus 149 ~~~~~f~~g~~~v 161 (237)
+..+..++..+.+
T Consensus 93 ~~~~~a~~~gi~v 105 (116)
T PF13380_consen 93 ELIEAAREAGIRV 105 (116)
T ss_dssp HHHHHHHHTT-EE
T ss_pred HHHHHHHHcCCEE
Confidence 4445555544443
No 308
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=49.13 E-value=31 Score=28.35 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=30.2
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..++|+||++-..+-.+.-.|...|+. +..|+|++.
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 4567999999988888888888888884 888988764
No 309
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=49.07 E-value=74 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=25.3
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHG 140 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~ 140 (237)
+.+++|-|.+..+++.+.+.|=...-...+-|+
T Consensus 29 G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~ 61 (144)
T COG2927 29 GWRVLIQCEDEAQAEALDEHLWTFSAESFIPHN 61 (144)
T ss_pred CCeEEEEeCCHHHHHHHHHhhhccchhcccCCc
Confidence 689999999999999999888544334445555
No 310
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.74 E-value=1.1e+02 Score=22.96 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=40.1
Q ss_pred CceEEEEeecccchHHHHHHHhhC--CCceEE-EeCCCCHHHHHHHHHHhhcCCCCEEEE
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH--GYPVTS-IHGDRTQKEREEALRRFRSGETPILVA 164 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~-~h~~~~~~~r~~~~~~f~~g~~~vlv~ 164 (237)
+.++-++-.+...++.+.+.|++. ++.+.. +|+-+..++...+++..++...++++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 345555666666778888788765 666555 678888888777888888777665543
No 311
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=48.49 E-value=17 Score=24.49 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCce----EEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 122 DQLEDFLHHHGYPV----TSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 122 ~~l~~~L~~~~~~~----~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
...+++|++.|+.+ ...+.+..+.-+.++.+.+++++++.+|.|..
T Consensus 20 ~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 20 EGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred hHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 46678888888883 33333323344557899999999887777643
No 312
>PRK01172 ski2-like helicase; Provisional
Probab=48.18 E-value=22 Score=33.34 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=34.3
Q ss_pred cccceeEEeecccchhhHHHHhhhcCC-------------------------CceeecCCcchhhHHHHhh
Q psy15610 55 DEALTLVFVETKKGADQLEDFLHHHGY-------------------------PVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 55 ~~~~~i~f~~t~~~~~~~~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~ 100 (237)
.+.++|+|++|+..++.++..|..... .+...|+.+.+..|..+..
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 456899999999999999988865311 2345688888888876643
No 313
>PRK06936 type III secretion system ATPase; Provisional
Probab=47.71 E-value=2e+02 Score=25.54 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=28.0
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSG 157 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 157 (237)
.+++++++|.+. +-.+++++...|.++.++-.+++..-+..-+-....|
T Consensus 217 ~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~g 276 (439)
T PRK06936 217 RKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAG 276 (439)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcC
Confidence 456666666553 3345777777777777776666654443333333333
No 314
>PRK05320 rhodanese superfamily protein; Provisional
Probab=46.11 E-value=27 Score=28.48 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=33.0
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..++++||.+-..+...+.+|.+.|+. +..+.||+..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 4678999999999999999999999985 7888999854
No 315
>PRK10329 glutaredoxin-like protein; Provisional
Probab=46.03 E-value=81 Score=20.44 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=37.7
Q ss_pred eEEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 110 LTLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 110 ~~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
++.+|+ ++-..|..+..+|.+.|+.+..+.-+..++..+.... .....+.+++.-+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~ 58 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGD 58 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECC
Confidence 355676 4566899999999999999988887776665554433 2223455665533
No 316
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=45.41 E-value=74 Score=19.79 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=38.4
Q ss_pred eEEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEE
Q psy15610 110 LTLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVA 164 (237)
Q Consensus 110 ~~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 164 (237)
++.+|+ ++-..|..+..+|.+.++.+..++=...++.+..+.+........+++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 344554 3467899999999999999998887777766666665554445555444
No 317
>KOG0344|consensus
Probab=45.29 E-value=33 Score=31.27 Aligned_cols=41 Identities=41% Similarity=0.598 Sum_probs=37.7
Q ss_pred eeEEeecccchhhHHHHh-hhcCCCceeecCCcchhhHHHHh
Q psy15610 59 TLVFVETKKGADQLEDFL-HHHGYPVTSIHGDRTQKEREEAQ 99 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~ 99 (237)
+++|+.+.+.+.++...| .-.+..+..+|++..+..|....
T Consensus 390 ~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred eEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHH
Confidence 899999999999999999 78999999999999999887763
No 318
>KOG0948|consensus
Probab=45.23 E-value=31 Score=32.73 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=26.3
Q ss_pred cceeEEeecccchhhHHHHhhhcCCCceee
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYPVTSI 86 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~ 86 (237)
.++|+||-++..||..+..+...+++.+..
T Consensus 384 ~PVIvFSFSkkeCE~~Alqm~kldfN~deE 413 (1041)
T KOG0948|consen 384 LPVIVFSFSKKECEAYALQMSKLDFNTDEE 413 (1041)
T ss_pred CceEEEEecHhHHHHHHHhhccCcCCChhH
Confidence 689999999999999999999998875443
No 319
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=45.15 E-value=2.6e+02 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=26.5
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
.+++++++|... +-.+++|++..|..+.++-.+++.
T Consensus 289 ~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~DStSR 335 (586)
T PRK04192 289 ERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSR 335 (586)
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChHH
Confidence 478888888663 334588888888888888777654
No 320
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=45.00 E-value=39 Score=23.00 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=29.6
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
..+++++|.+...+...+..|...|+. +..+.|++..
T Consensus 58 ~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 58 DTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 567888999888888888899988885 6778887643
No 321
>PLN02160 thiosulfate sulfurtransferase
Probab=44.84 E-value=29 Score=25.15 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=31.1
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..+++++|.+-..+...+..|...|+. +..+.|++..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 4568999999999999999999988874 7777887643
No 322
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=44.65 E-value=75 Score=19.65 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=33.1
Q ss_pred EEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 111 TLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 111 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
+.+|+ +.-..|..+.++|.+.++.+..+.-..+++.+....+...
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 34554 4566789999999999999999888877766666555443
No 323
>PRK00254 ski2-like helicase; Provisional
Probab=44.44 E-value=43 Score=31.66 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=46.5
Q ss_pred CceEEEEeecccchHHHHHHHhh---CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc-----cccc-cCCCCCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHH---HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV-----AARG-LDIPHVK 178 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~G-vdl~~~~ 178 (237)
+.++|+.+|+++-+.+..+.+.. .+..+..++|+.+...+. .+..+|+|+|+. +..+ ..+.++.
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~-------~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~ 140 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhh-------hccCCEEEEcHHHHHHHHhCCchhhhcCC
Confidence 57899999999998888776653 478899999988754221 145789999942 1111 2345667
Q ss_pred EEEE
Q psy15610 179 HVIN 182 (237)
Q Consensus 179 ~Vi~ 182 (237)
+||.
T Consensus 141 lvVi 144 (720)
T PRK00254 141 LVVA 144 (720)
T ss_pred EEEE
Confidence 6664
No 324
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=44.35 E-value=30 Score=23.10 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=29.8
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeecCCc
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 90 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (237)
+.+.+++++|.+-......+..|...|+.+..+.+.+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~ 95 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGM 95 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcH
Confidence 4567899999998888899999999999866665543
No 325
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=43.98 E-value=1.2e+02 Score=21.88 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=35.9
Q ss_pred ceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcccccc
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGL 172 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gv 172 (237)
.+-.+++........+...+...+..+.+++| .+.+.+.....+.+++++.-+...|+
T Consensus 47 ~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G------~~~l~~~~~~~~~D~vv~Ai~G~aGL 104 (129)
T PF02670_consen 47 KPKYVVIADEEAYEELKKALPSKGPGIEVLSG------PEGLEELAEEPEVDIVVNAIVGFAGL 104 (129)
T ss_dssp T-SEEEESSHHHHHHHHHHHHHTTSSSEEEES------HHHHHHHHTHTT-SEEEE--SSGGGH
T ss_pred CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeC------hHHHHHHhcCCCCCEEEEeCcccchH
Confidence 44456666666677777777666677778877 34455555667778777766655554
No 326
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=43.42 E-value=68 Score=31.19 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=44.2
Q ss_pred ccCCceEEEEeeccc----chHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 105 SCDEALTLVFVETKK----GADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~----~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
...+..+-|.+++.- +++.+..++...|+.+.++.+++++.+|..... .+|+++|..
T Consensus 120 al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 120 ALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 455777888888865 455566666677999999999999999987666 688888854
No 327
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=42.49 E-value=40 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=29.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
..+++|+|.+...+..++..|...|. ++..+.||+.
T Consensus 49 ~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 49 AERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 46799999998888888888888877 7889999863
No 328
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=42.32 E-value=66 Score=26.57 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=47.4
Q ss_pred ceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHV 177 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~ 177 (237)
.--+|+|..+.+...+-..+.-. -+...+|..-..+....++.....|.. |.+.||++.-++.=|..
T Consensus 25 ~~d~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~ 91 (276)
T TIGR00096 25 CVDLFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGH 91 (276)
T ss_pred hCCEEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccH
Confidence 34678888777666665555322 256677777667777777787777754 88888998888887764
No 329
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=42.24 E-value=42 Score=22.90 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=26.9
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR 142 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~ 142 (237)
..+++++|.+-..+...+..|...|+.....-||+
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 45788999998888888999999887644334664
No 330
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=41.17 E-value=1.6e+02 Score=25.65 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=40.8
Q ss_pred ccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEe-ecccchHHHHHHHhhCCCc
Q psy15610 56 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFV-ETKKGADQLEDFLHHHGYP 134 (237)
Q Consensus 56 ~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~-~t~~~~~~l~~~L~~~~~~ 134 (237)
+.+-+++++|..+.++++.....+ +.+.+++. ...+.+.++...+.+.|+.
T Consensus 120 ~~kpLL~aAt~eNyk~m~~lA~~y----------------------------~~pl~v~sp~Dln~lk~Ln~~l~~~Gv~ 171 (386)
T PF03599_consen 120 GKKPLLYAATEENYKAMAALAKEY----------------------------GHPLIVSSPIDLNLLKQLNIKLTELGVK 171 (386)
T ss_dssp TS--EEEEEBTTTHHHHHHHHHHC----------------------------T-EEEEE-SSCHHHHHHHHHHHHTTT-G
T ss_pred cCCcEEeEcCHHHHHHHHHHHHHc----------------------------CCeEEEEecccHHHHHHHHHHHHhcCcc
Confidence 355788999999999888888777 67778887 6777888888888888877
Q ss_pred eEEEeCC
Q psy15610 135 VTSIHGD 141 (237)
Q Consensus 135 ~~~~h~~ 141 (237)
=.++..+
T Consensus 172 dIVlDpg 178 (386)
T PF03599_consen 172 DIVLDPG 178 (386)
T ss_dssp GEEEE--
T ss_pred cEEecCC
Confidence 6666543
No 331
>PRK01415 hypothetical protein; Validated
Probab=40.14 E-value=34 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..++++||.+--.+...+.+|.+.|+. +..+.||+..
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 4578999999999999999999999985 7788888644
No 332
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=39.58 E-value=41 Score=22.61 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=30.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceE-EEeCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVT-SIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~ 143 (237)
..+.+++|.+-......+..|...|+... .+.|++.
T Consensus 61 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 61 DDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 57899999999999999999999987766 6666653
No 333
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=39.08 E-value=46 Score=22.35 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCceEEEEeecccchHHHHHH-----HhhCCC-ceEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDF-----LHHHGY-PVTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~-----L~~~~~-~~~~~h~~~~~ 144 (237)
+...+++||.+.......... |...|+ ++..+.||+..
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 345688889666665555554 777777 78888887643
No 334
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=38.82 E-value=68 Score=23.41 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=26.5
Q ss_pred CceEEEEee------cccchHHHHHHHhhCCCce---EEEeCCCC-HHHHHHHHHHhhcCC-CCEEEEcCc
Q psy15610 108 EALTLVFVE------TKKGADQLEDFLHHHGYPV---TSIHGDRT-QKEREEALRRFRSGE-TPILVATAV 167 (237)
Q Consensus 108 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~---~~~h~~~~-~~~r~~~~~~f~~g~-~~vlv~T~~ 167 (237)
..+.|+|+. ....++.+.+++...|++. ..-..+.+ .+.-....+.+.+.. -++++.|+.
T Consensus 37 ~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~ 107 (155)
T PF02698_consen 37 YAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSP 107 (155)
T ss_dssp HT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--C
T ss_pred CCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCH
Confidence 356688887 6678899999998887652 22222233 333333344454333 356666653
No 335
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=38.21 E-value=64 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.5
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHG 140 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~ 140 (237)
+.+++|.|++.+.++.+.+.|=...-...+-|+
T Consensus 29 G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~ 61 (154)
T PRK06646 29 DLKSVILTADADQQEMLNKNLWTYSRKQFIPHG 61 (154)
T ss_pred CCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCC
Confidence 688999999999999999988443333444555
No 336
>KOG0351|consensus
Probab=37.88 E-value=63 Score=31.65 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=34.5
Q ss_pred HhhCCCceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEcC
Q psy15610 128 LHHHGYPVTSIHGDRTQKEREEALRRFRSG--ETPILVATA 166 (237)
Q Consensus 128 L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~ 166 (237)
|...++++.+++++++..+|..+++.+.+| .++++-.|+
T Consensus 324 L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 324 LSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred hhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 355689999999999999999999999999 788887775
No 337
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=37.63 E-value=57 Score=33.13 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=59.0
Q ss_pred hHHHHhhcceeEEEeeccCCCCCceeEEEEeech------hHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHH
Q psy15610 2 LAKEFLYRYIFLAIGRVGSTSENITQRIAWVDEQ------DKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDF 75 (237)
Q Consensus 2 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~ 75 (237)
+++.|...|+ |.+... ...++..|..+... +.+..+.+.+.... ..+...+|+|+++...++.+++.
T Consensus 233 fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~---~~~~GdILVFLpg~~EIe~lae~ 305 (1294)
T PRK11131 233 FSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG---REGPGDILIFMSGEREIRDTADA 305 (1294)
T ss_pred HHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHh---cCCCCCEEEEcCCHHHHHHHHHH
Confidence 4455555553 555322 24577777665432 23334443332211 12456799999999999999999
Q ss_pred hhhcCCC---ceeecCCcchhhHHHHhh
Q psy15610 76 LHHHGYP---VTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 76 l~~~~~~---~~~~~~~~~~~~~~~~~~ 100 (237)
|...+++ +.-+|+.+.+..+..+..
T Consensus 306 L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~ 333 (1294)
T PRK11131 306 LNKLNLRHTEILPLYARLSNSEQNRVFQ 333 (1294)
T ss_pred HHhcCCCcceEeecccCCCHHHHHHHhc
Confidence 9988876 456799999988887744
No 338
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=37.08 E-value=55 Score=23.02 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCceEEEEee-cccchHHHHHHHhhC------------CC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVE-TKKGADQLEDFLHHH------------GY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~-t~~~~~~l~~~L~~~------------~~-~~~~~h~~~~ 143 (237)
+...++++|. +...+...+..|... |+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567889997 777777777777763 44 5778888764
No 339
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=36.90 E-value=36 Score=25.25 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=47.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC----ccccccCCCCCcEEEE
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA----VAARGLDIPHVKHVIN 182 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~~Gvdl~~~~~Vi~ 182 (237)
...++||..+|+..++++.+.|... ++. +|...-.. ..+. +.+..+.|.. -+..+...++.++||.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~--~~~-~~t~~~~~------~~~g-~~~i~vMc~at~~~~~~~p~~~~~yd~II~ 101 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGL--PVR-FHTNARMR------THFG-SSIIDVMCHATYGHFLLNPCRLKNYDVIIM 101 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTS--SEE-EESTTSS----------S-SSSEEEEEHHHHHHHHHTSSCTTS-SEEEE
T ss_pred ccCeEEEecccHHHHHHHHHHHhcC--Ccc-cCceeeec------cccC-CCcccccccHHHHHHhcCcccccCccEEEE
Confidence 3689999999999999999999754 333 33221110 2222 2222233322 2333666677777776
Q ss_pred ecCCC-CHHHHHHhhcccccCCCCC-ceEEeecCCCC
Q psy15610 183 FDLPS-DVEEYVHRIGRTGRMGNLD-FPFSYNQPGYG 217 (237)
Q Consensus 183 ~~~p~-s~~~~~Q~~GR~~R~g~~~-~~~~~~~~~~~ 217 (237)
=...+ ++.... ..|........| ..++|.++-..
T Consensus 102 DEcH~~Dp~sIA-~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 102 DECHFTDPTSIA-ARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp CTTT--SHHHHH-HHHHHHHHHHTTS-EEEEEESS-T
T ss_pred eccccCCHHHHh-hheeHHHhhhccCeeEEEEeCCCC
Confidence 44443 344432 223332222222 34566664443
No 340
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=36.73 E-value=56 Score=24.45 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=28.3
Q ss_pred cCCceEEEEeeccc-chHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 106 CDEALTLVFVETKK-GADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 106 ~~~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
.+..++++||.+-. ........|...|+. +..+.||+.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 35678999999754 456677777888885 777888864
No 341
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=36.70 E-value=1.9e+02 Score=24.51 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=50.2
Q ss_pred hhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc------CCCCEEEEc
Q psy15610 103 LISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS------GETPILVAT 165 (237)
Q Consensus 103 ~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~------g~~~vlv~T 165 (237)
+.......+||.-.........+..|+..|+++..+-|..-.+.-+++...|++ +..+++|++
T Consensus 71 I~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 71 IIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred HHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 444557789999999999999999999999999999998888888888888863 233555554
No 342
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.47 E-value=1.1e+02 Score=23.98 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=41.1
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHH--------HHHHHHHhhcCCCC-EEEEcCccccc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE--------REEALRRFRSGETP-ILVATAVAARG 171 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------r~~~~~~f~~g~~~-vlv~T~~~~~G 171 (237)
....|..+.+...+..+++.=..+| .+.++||.++|-+ -...+++.+++.++ |+++|+.--+|
T Consensus 77 d~~~iCVVE~~~Dv~aiE~~~~y~G-~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~tvEG 148 (195)
T TIGR00615 77 DNSVICVVEDPKDVFALEKTKEFRG-RYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNPTVEG 148 (195)
T ss_pred CCCEEEEECCHHHHHHHHhhCccce-EEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCchH
Confidence 3457778888887777777655555 6778887666533 34556666666655 88888654443
No 343
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=35.44 E-value=3.7e+02 Score=24.97 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
.++++.++|.+. +-.+++|++..|..+..+-.+++.
T Consensus 290 ~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR 336 (591)
T TIGR01042 290 KRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSR 336 (591)
T ss_pred cceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 467777777653 334578888888888888777654
No 344
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=34.53 E-value=1.6e+02 Score=29.39 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=51.7
Q ss_pred echhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhh
Q psy15610 33 DEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ 100 (237)
Q Consensus 33 ~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (237)
....|+..|..+|.... ..+.++||||.....+..+..+|...++.+..+++......|...+.
T Consensus 468 e~SgKl~lLdkLL~~Lk----~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id 531 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLK----ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASID 531 (1033)
T ss_pred hhhhHHHHHHHHHHHHH----hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHH
Confidence 34568888888876543 23568999999998899999999999999999999999888876643
No 345
>COG1204 Superfamily II helicase [General function prediction only]
Probab=33.61 E-value=1.6e+02 Score=28.23 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=48.2
Q ss_pred CceEEEEeecccchHHHHHHHh---hCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC----ccccccC--CCCCc
Q psy15610 108 EALTLVFVETKKGADQLEDFLH---HHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA----VAARGLD--IPHVK 178 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~~Gvd--l~~~~ 178 (237)
+.+++-.||++.-+.+..+.++ ..|+++..++|+++.... .-+..+|+|+|. .+.+--+ +-.++
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~ 148 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RLARYDVIVTTPEKLDSLTRKRPSWIEEVD 148 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hhccCCEEEEchHHhhHhhhcCcchhhccc
Confidence 5789899999999999988887 669999999998764321 125678999993 3333222 23466
Q ss_pred EEEE
Q psy15610 179 HVIN 182 (237)
Q Consensus 179 ~Vi~ 182 (237)
+||.
T Consensus 149 lvVi 152 (766)
T COG1204 149 LVVI 152 (766)
T ss_pred EEEE
Confidence 6553
No 346
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=33.60 E-value=2.7e+02 Score=22.79 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=34.8
Q ss_pred chHHHHHHHhhCCCceEEEeC-CCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEecCC
Q psy15610 120 GADQLEDFLHHHGYPVTSIHG-DRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINFDLP 186 (237)
Q Consensus 120 ~~~~l~~~L~~~~~~~~~~h~-~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~~~p 186 (237)
.++++.+.+...+..+.++.. ..+.+. + +.++....++++-+|....+. .++++|+.++.
T Consensus 68 d~~~~~~~l~~~~~d~vV~D~y~~~~~~-~---~~~k~~~~~l~~iDD~~~~~~---~~D~vin~~~~ 128 (279)
T TIGR03590 68 DALELINLLEEEKFDILIVDHYGLDADW-E---KLIKEFGRKILVIDDLADRPH---DCDLLLDQNLG 128 (279)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCCCCHHH-H---HHHHHhCCeEEEEecCCCCCc---CCCEEEeCCCC
Confidence 455677777766666666655 444432 2 333333446666667655544 57888876543
No 347
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=33.46 E-value=2.4e+02 Score=22.19 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=19.5
Q ss_pred cceeEEeecccchhhHHHHhhhcCCCceee
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYPVTSI 86 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~ 86 (237)
..+++..++..-...+++.|...|..+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~ 41 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVN 41 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 446666666666778888887775544333
No 348
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=33.06 E-value=64 Score=21.25 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=27.5
Q ss_pred HHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 124 LEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 124 l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
.+++|.+.|+.+..++..... .+..+.+.+++|+++.+|.|..
T Consensus 22 Ta~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 22 TAKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 356677778776433332211 2235888999999998888754
No 349
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.05 E-value=2.8e+02 Score=22.83 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=49.0
Q ss_pred cceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhC-CCce
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHH-GYPV 135 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~ 135 (237)
..++|-.+|-.=-.++++.|-.. +...|+..-+.+..+.+++.|... +..+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~----------------------------g~~liLvaR~~~kL~~la~~l~~~~~v~v 58 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARR----------------------------GYNLILVARREDKLEALAKELEDKTGVEV 58 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHC----------------------------CCEEEEEeCcHHHHHHHHHHHHHhhCceE
Confidence 34556666666667778888777 455666666666677777777653 4566
Q ss_pred EEEeCCCCH-HHHHHHHHHhhcC--CCCEEEEc
Q psy15610 136 TSIHGDRTQ-KEREEALRRFRSG--ETPILVAT 165 (237)
Q Consensus 136 ~~~h~~~~~-~~r~~~~~~f~~g--~~~vlv~T 165 (237)
.++--+++. ++.+++.+..++. .+++||-.
T Consensus 59 ~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 59 EVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred EEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 666666554 3344444444443 56666654
No 350
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=32.70 E-value=1.8e+02 Score=23.63 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=20.1
Q ss_pred ceEEEEeec-ccchHHHHHHHhhCCCceEEEe
Q psy15610 109 ALTLVFVET-KKGADQLEDFLHHHGYPVTSIH 139 (237)
Q Consensus 109 ~~~iIF~~t-~~~~~~l~~~L~~~~~~~~~~h 139 (237)
.+.|||+.. .+.+..|.+.+...++.+..+|
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 345555544 5567788888887777765554
No 351
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=31.91 E-value=1.4e+02 Score=24.27 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=52.1
Q ss_pred CceEEEEeecccchHHHHHHHhhC---CCceEEEeC-CCCHHHHHHHHHHhhcCCCCEEEEcCc-----ccc-ccCCCCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHH---GYPVTSIHG-DRTQKEREEALRRFRSGETPILVATAV-----AAR-GLDIPHV 177 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~~h~-~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-Gvdl~~~ 177 (237)
...+||.|.+.-.|-.+.+.|... +..+.-+.+ .+.-++... ..+.+...|.|+|+. ++. .+.+...
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~---~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVK---LLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHH---HHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 456889999988888888888754 233332222 234444333 335567889999962 333 3455566
Q ss_pred cEEEE------------ecCCCCHHHHHHhhcc
Q psy15610 178 KHVIN------------FDLPSDVEEYVHRIGR 198 (237)
Q Consensus 178 ~~Vi~------------~~~p~s~~~~~Q~~GR 198 (237)
.+||. +|.|.....+.+..++
T Consensus 203 ~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 203 KRIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred eEEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 66553 5556665656565544
No 352
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=31.45 E-value=42 Score=22.62 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=36.0
Q ss_pred EEEeecccchHHHHHHHhhCCCceEEEeCCCCHH------------HHHHHHHHhhcCCCCEEEEcCcccccc
Q psy15610 112 LVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQK------------EREEALRRFRSGETPILVATAVAARGL 172 (237)
Q Consensus 112 iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~------------~r~~~~~~f~~g~~~vlv~T~~~~~Gv 172 (237)
+|.+.....+..++..|......+....|.+-.. ...+.+...-.+--.|+++||.-.+|-
T Consensus 2 liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe 74 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGE 74 (100)
T ss_dssp EEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHH
T ss_pred EEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHH
Confidence 6777778888888888874445555555553211 123334443344567888888766653
No 353
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=31.43 E-value=4.3e+02 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=27.4
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
.+++++++|.+. +-.+++|++..|..+.++-.+++.
T Consensus 284 ~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~DS~sR 330 (578)
T TIGR01043 284 ERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 330 (578)
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChhH
Confidence 468888888663 345688898889999988887764
No 354
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=31.34 E-value=3.9e+02 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=12.7
Q ss_pred HHHHHHh-hCCCceEEEeCCCCHH
Q psy15610 123 QLEDFLH-HHGYPVTSIHGDRTQK 145 (237)
Q Consensus 123 ~l~~~L~-~~~~~~~~~h~~~~~~ 145 (237)
.++++++ ..|..+.++-.+++..
T Consensus 229 tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 229 TAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHhcCCcEEEEEcChHHH
Confidence 3456665 4566666665555543
No 355
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=31.25 E-value=69 Score=26.34 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=51.4
Q ss_pred HHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCC
Q psy15610 95 REEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDI 174 (237)
Q Consensus 95 ~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl 174 (237)
........+-..+.-++||+++...-....-+.+++.-..+..+.|..... -. .+ +...++.+.++...+|..+
T Consensus 49 ttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ED-p~-~i----~~~aDi~~~~D~~~~G~~i 122 (275)
T PF12683_consen 49 TTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHED-PE-VI----SSAADIVVNPDEISRGYTI 122 (275)
T ss_dssp HHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S--HH-HH----HHHSSEEEE--HHHHHHHH
T ss_pred HHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCC-HH-HH----hhccCeEeccchhhccHHH
Confidence 333333444556677999999998876666666666556777777753321 11 11 1236899999999999877
Q ss_pred C------CCcEEEEecCCCCHH
Q psy15610 175 P------HVKHVINFDLPSDVE 190 (237)
Q Consensus 175 ~------~~~~Vi~~~~p~s~~ 190 (237)
+ .+...+++..|...+
T Consensus 123 ~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 123 VWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp HHHHHHTT-S-EEEEEETTGGG
T ss_pred HHHHHHcCCceEEEEechhhcc
Confidence 6 467899999988544
No 356
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.07 E-value=3.4e+02 Score=23.17 Aligned_cols=104 Identities=12% Similarity=0.093 Sum_probs=59.8
Q ss_pred eeEEeecccchhhHHHHhh---hcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCce
Q psy15610 59 TLVFVETKKGADQLEDFLH---HHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPV 135 (237)
Q Consensus 59 ~i~f~~t~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~ 135 (237)
+|+|.-+-.....+.+.+. ..+...........+..-....+......+..+ +.+..-...+++++. +.+.
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~-~~vLSGPs~A~EVa~-----g~pt 147 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP-IAVLSGPSFAKEVAQ-----GLPT 147 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe-EEEEECccHHHHHhc-----CCCc
Confidence 4555555555666666653 233333333333333322222222222223333 666666667777665 3455
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Q psy15610 136 TSIHGDRTQKEREEALRRFRSGETPILVATAVA 168 (237)
Q Consensus 136 ~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 168 (237)
...-++.++..-.++...|.+..+++-.++|+.
T Consensus 148 a~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~ 180 (329)
T COG0240 148 AVVVASNDQEAAEKVQALFSSPYFRVYTSTDVI 180 (329)
T ss_pred EEEEecCCHHHHHHHHHHhCCCcEEEEecCchh
Confidence 555566788888899999999999999888875
No 357
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=31.02 E-value=62 Score=27.24 Aligned_cols=38 Identities=11% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCCH
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRTQ 144 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 144 (237)
+..++++||.+-..+...+.+|...|+. +..+.||+..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 5678999999999999999999999984 8889998755
No 358
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=30.92 E-value=4.1e+02 Score=24.15 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCHHHHH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQKERE 148 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 148 (237)
.+++|+++|.+. +-.+++++...|..+.++-.+++..-+.
T Consensus 219 ~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A 269 (502)
T PRK09281 219 EYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVA 269 (502)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHH
Confidence 467777777654 4456777777777787777777654433
No 359
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=30.89 E-value=29 Score=28.72 Aligned_cols=88 Identities=22% Similarity=0.187 Sum_probs=52.5
Q ss_pred HHhhcceeEEEeecc-CCCCCceeEEEEeechh-HHHHHHHhhcCchhh--hcccccceeEEeecccc------hhhHHH
Q psy15610 5 EFLYRYIFLAIGRVG-STSENITQRIAWVDEQD-KRSCLLDLLSSPSQE--ELGDEALTLVFVETKKG------ADQLED 74 (237)
Q Consensus 5 ~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~--~~~~~~~~i~f~~t~~~------~~~~~~ 74 (237)
+||.||..+.--+.- .....+.+++..-++.+ =+..+.+++...... ..+.....|.+.=|-.+ ++++++
T Consensus 186 RfLpNP~y~~~Lr~lTG~D~~V~~yv~~~~~~~~f~~~~~~~l~~~lp~y~~egk~~ltIaiGCTGG~HRSV~iae~La~ 265 (284)
T PF03668_consen 186 RFLPNPYYVPELRPLTGLDKPVQDYVLSDPEAQEFLEKIEDLLDFLLPRYEKEGKSYLTIAIGCTGGQHRSVAIAERLAE 265 (284)
T ss_pred CcCCCCCCChhhhhcCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCCCcCcHHHHHHHHHH
Confidence 588888776433222 44455666655545432 334444444433211 12334446666555333 899999
Q ss_pred HhhhcCCCceeecCCcch
Q psy15610 75 FLHHHGYPVTSIHGDRTQ 92 (237)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~ 92 (237)
.|...++.+...|.++.+
T Consensus 266 ~L~~~~~~v~v~HRdl~k 283 (284)
T PF03668_consen 266 RLREKGYTVVVRHRDLEK 283 (284)
T ss_pred HHHhcCCcceEEcCCCCC
Confidence 999999999988887754
No 360
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.67 E-value=1.7e+02 Score=19.61 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=40.4
Q ss_pred eEEEEeeccc-----chHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcccccc-CCCCCcE
Q psy15610 110 LTLVFVETKK-----GADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGL-DIPHVKH 179 (237)
Q Consensus 110 ~~iIF~~t~~-----~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gv-dl~~~~~ 179 (237)
++++.|.+-- .+..+.+.+.+.|+.+.+.|.+...- .... ...+++++|..+...+ ++|-...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~~~~ 72 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPLVHG 72 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCEEEE
Confidence 5777787644 24667788888999988888654321 1111 4578999987666555 3554433
No 361
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=29.85 E-value=1.6e+02 Score=19.99 Aligned_cols=36 Identities=0% Similarity=0.179 Sum_probs=31.2
Q ss_pred chHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 120 GADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 120 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
.++++++.....+..+.+++..++|.+...+.+.+.
T Consensus 45 K~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 45 KVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 367888888888999999999999999999888884
No 362
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=29.74 E-value=1.2e+02 Score=25.68 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=34.9
Q ss_pred cchHHHHHHHhhCCCceEEEeCCC-CHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 119 KGADQLEDFLHHHGYPVTSIHGDR-TQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 119 ~~~~~l~~~L~~~~~~~~~~h~~~-~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
+.++.+.+.+...+..+..+.|.| +.--|..+....++|-++++|||..
T Consensus 42 ~A~~i~~~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 42 RASEILKEMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred HHHHHHHHHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 345666666655554466777888 5566777777888999999999954
No 363
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=29.64 E-value=1.3e+02 Score=21.09 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=37.2
Q ss_pred EEEEeecccchHHHHHHHhhCCCceEEEeCCCCHH--------HHHHHHHHhhcCCCC-EEEEcCccccc
Q psy15610 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQK--------EREEALRRFRSGETP-ILVATAVAARG 171 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~--------~r~~~~~~f~~g~~~-vlv~T~~~~~G 171 (237)
.|+.+.+...+..+++.-..+|. ..+++|..++. .-....++.+++.++ |+++|+.--+|
T Consensus 2 ~lcVVE~~~Dv~~iE~~~~y~G~-Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EVIlA~~pt~EG 70 (112)
T cd01025 2 KLCVVEEPRDVLAIEESGEYRGL-YHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVILATNPTVEG 70 (112)
T ss_pred EEEEECCHHHHHHHHhhCccceE-EEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEEEEecCCCchH
Confidence 35566666666666665445564 77777776653 344556666666665 88887654443
No 364
>PRK13844 recombination protein RecR; Provisional
Probab=29.52 E-value=1.5e+02 Score=23.17 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=40.3
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHH--------HHHHHHHhhcCCCC-EEEEcCcccc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKE--------REEALRRFRSGETP-ILVATAVAAR 170 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------r~~~~~~f~~g~~~-vlv~T~~~~~ 170 (237)
....|..+.+...+..+++.-...| .+.++||-++|-+ -...+++.+++.++ |+++|+.--+
T Consensus 81 d~~~iCVVE~~~Dv~aiE~t~~y~G-~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~~~~v~EVIlAt~~t~E 151 (200)
T PRK13844 81 DDTKLCIIESMLDMIAIEEAGIYRG-KYFVLNGRISPLDGIGPSELKLDILQQIIADRKIDEVILAISPTVE 151 (200)
T ss_pred CCCEEEEECCHHHHHHHHhhCccce-EEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCcc
Confidence 3557788888888877777655555 6777777765533 34455666666655 8888865433
No 365
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=29.52 E-value=4.2e+02 Score=23.81 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=26.9
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhh-CCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHH-HGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
.+++|+++|-+. +-.+++++.. .|.++.++-.+++..-+..-+-....|+
T Consensus 202 ~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~ge 263 (463)
T PRK09280 202 DKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGR 263 (463)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCC
Confidence 456666666543 3345666666 6666666666665444433333333344
No 366
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=29.31 E-value=4.2e+02 Score=23.69 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=32.3
Q ss_pred ceEEEEeecccc-----------hHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
.+++++++|.+. +-.+++++...|..+.++-.+++..-+..-+-....|+
T Consensus 217 ~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~ge 277 (444)
T PRK08972 217 ARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGE 277 (444)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCC
Confidence 566777777553 33467888777888888877777655554444444455
No 367
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.15 E-value=1.5e+02 Score=18.67 Aligned_cols=55 Identities=18% Similarity=0.078 Sum_probs=40.9
Q ss_pred EEeecccchHHHHHHHhhCCCceEEEeCC------CCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 113 VFVETKKGADQLEDFLHHHGYPVTSIHGD------RTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~~~~~~~~h~~------~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
++...-..+-+++..|...+..+.+++.+ ++++-+....+.+++..+++...+.+
T Consensus 3 vViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 3 VVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp EEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred EEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 44445555677888888888888888754 56778888999999888777766543
No 368
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.99 E-value=57 Score=24.95 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=45.7
Q ss_pred ceEEEEeecccchHHHHHHHhhCCC-------ceEEEeCCCCHHHHHHHHHHhhcC--CCCEEEEcCccccccCCCC
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHHGY-------PVTSIHGDRTQKEREEALRRFRSG--ETPILVATAVAARGLDIPH 176 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gvdl~~ 176 (237)
...++.|--+-..-.+++++..... .+..||++++.....++.+..... .-+||+.-|++..|..+..
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~ 111 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSK 111 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChhHHH
Confidence 4566666666667777777776543 356788888887766666665543 2358888888888776543
No 369
>KOG0385|consensus
Probab=28.76 E-value=2e+02 Score=27.66 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=41.8
Q ss_pred ccCCceEEEEeecccchHHHHHHHhhC-CCceEEEeCCCCHHHHHHHHHHh-hcCCCCEEEEcC
Q psy15610 105 SCDEALTLVFVETKKGADQLEDFLHHH-GYPVTSIHGDRTQKEREEALRRF-RSGETPILVATA 166 (237)
Q Consensus 105 ~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f-~~g~~~vlv~T~ 166 (237)
....++-+|.||-.-...-+.++-+.. ++++..+||+ .++|....+.+ ..+.++|+|+|-
T Consensus 214 ~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 214 KGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred cCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 344688999999655444444443332 7889999995 57777776654 567899999983
No 370
>KOG0390|consensus
Probab=27.82 E-value=3.7e+02 Score=25.94 Aligned_cols=131 Identities=19% Similarity=0.254 Sum_probs=78.0
Q ss_pred EeechhHHHHHHHhhcCchhhhcccccceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCce
Q psy15610 31 WVDEQDKRSCLLDLLSSPSQEELGDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEAL 110 (237)
Q Consensus 31 ~~~~~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (237)
...+..|+..|..+|....+ ...-.+.+.++-+...+.+...++-.|+.+..++|.+....|..+.. -...+..+
T Consensus 573 ~~~ks~kl~~L~~ll~~~~e---k~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd--~FN~p~~~ 647 (776)
T KOG0390|consen 573 DGSKSGKLLVLVFLLEVIRE---KLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVD--TFNDPESP 647 (776)
T ss_pred cchhhhHHHHHHHHHHHHhh---hcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHH--hccCCCCC
Confidence 33345688888888743321 12233445555555566667777777999999999999999987732 11223344
Q ss_pred EEEEeecccch-HHHHHHHhhCC-CceEEEeCC-CCHHHHHHHHHHhhcCCCCE-----EEEcCcccc
Q psy15610 111 TLVFVETKKGA-DQLEDFLHHHG-YPVTSIHGD-RTQKEREEALRRFRSGETPI-----LVATAVAAR 170 (237)
Q Consensus 111 ~iIF~~t~~~~-~~l~~~L~~~~-~~~~~~h~~-~~~~~r~~~~~~f~~g~~~v-----lv~T~~~~~ 170 (237)
.-||.-+.+.+ ..+. -.| -++..+... -|..+++.+.+.|+.|.-+. |++|+..++
T Consensus 648 ~~vfLlSsKAgg~Gin----LiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 648 SFVFLLSSKAGGEGLN----LIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred ceEEEEecccccCcee----ecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 45676665533 2211 111 134555544 45567888888899998664 455554443
No 371
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=27.80 E-value=2.5e+02 Score=20.62 Aligned_cols=55 Identities=13% Similarity=0.315 Sum_probs=44.1
Q ss_pred EEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhc-CCCCEEEEc
Q psy15610 111 TLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRS-GETPILVAT 165 (237)
Q Consensus 111 ~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T 165 (237)
+=||..|-+.--.+.+.....|+++..+..+-.++.+.++++.++. +...++|.+
T Consensus 46 V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn 101 (152)
T COG4087 46 VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGN 101 (152)
T ss_pred heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEecC
Confidence 5588888887777778787789999999999999999999999884 344555655
No 372
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=27.73 E-value=2e+02 Score=19.96 Aligned_cols=54 Identities=19% Similarity=0.084 Sum_probs=39.6
Q ss_pred EEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCC--CCEEEEcC
Q psy15610 113 VFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGE--TPILVATA 166 (237)
Q Consensus 113 IF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 166 (237)
...++-..|+...++|.+.|+.+..++-...+..+..+.+.+..-. ..-++.|.
T Consensus 4 Y~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~ 59 (117)
T TIGR01617 4 YGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTR 59 (117)
T ss_pred EeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCC
Confidence 3455677889999999999999999987777777777766665433 45566663
No 373
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=27.71 E-value=1.9e+02 Score=21.15 Aligned_cols=54 Identities=39% Similarity=0.470 Sum_probs=34.8
Q ss_pred CceEEEEeecccchHHHHHHHhhCC-----CceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEc
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHG-----YPVTSIHGDRTQKEREEALRRFRSGETPILVAT 165 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 165 (237)
..++++.+++...+..+...+.... .....+++... ......+.++...++++|
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t 112 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTT 112 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeC
Confidence 3679999999888887777766543 33444554433 233444555666888888
No 374
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=27.55 E-value=1.9e+02 Score=20.41 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=35.6
Q ss_pred eEEEEeecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcC
Q psy15610 110 LTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATA 166 (237)
Q Consensus 110 ~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 166 (237)
.++|-..+.+.+....++..+.+.++..-..+.++++...+.+.-+ ...++++++
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~--~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK--KIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT--TSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc--cCCEEEeCC
Confidence 3555555777777777777777888888888888777766665333 377877754
No 375
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.51 E-value=2.8e+02 Score=24.13 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=43.7
Q ss_pred CCceEEEEe---ecccchHHHHHHHhhCCC---ceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Q psy15610 107 DEALTLVFV---ETKKGADQLEDFLHHHGY---PVTSIHGDRTQKEREEALRRFRSGETPILVATAVA 168 (237)
Q Consensus 107 ~~~~~iIF~---~t~~~~~~l~~~L~~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 168 (237)
.+..+||+= .|-......++.|++.|. .+...||-++ .-.+++.+.|.+|.+.-+++|+..
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 455677663 444456666777777654 4667799888 667777788888988988898875
No 376
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.15 E-value=2.6e+02 Score=20.24 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=41.7
Q ss_pred hhHHHHHHHhhcCchhhhcccccceeEEee------cccchhhHHHHhhhcCCCceee--cCCcchhhHHHHhhhhhhcc
Q psy15610 35 QDKRSCLLDLLSSPSQEELGDEALTLVFVE------TKKGADQLEDFLHHHGYPVTSI--HGDRTQKEREEAQQYTLISC 106 (237)
Q Consensus 35 ~~k~~~l~~ll~~~~~~~~~~~~~~i~f~~------t~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 106 (237)
..++..-.++.... ..+.|+||. ....++.+.+++...|++...+ .........+......+...
T Consensus 23 ~~R~~~a~~L~~~g-------~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~ 95 (155)
T PF02698_consen 23 RERLDEAARLYKAG-------YAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKE 95 (155)
T ss_dssp HHHHHHHHHHHH-H-------HT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC-------CCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHh
Confidence 35666777676643 334688888 4556888999999888875333 23323233333333333333
Q ss_pred CCceEEEEeecccchHHHHHHHhh
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHH 130 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~ 130 (237)
.+-+.++++.+.-+.......+.+
T Consensus 96 ~~~~~iilVT~~~H~~Ra~~~~~~ 119 (155)
T PF02698_consen 96 RGWQSIILVTSPYHMRRARMIFRK 119 (155)
T ss_dssp -SSS-EEEE--CCCHHHHHHHHHH
T ss_pred hcCCeEEEECCHHHHHHHHHHHHH
Confidence 333555666666666665555543
No 377
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=25.91 E-value=2.6e+02 Score=20.14 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=36.1
Q ss_pred CceEEEEeecc---cchHHHHHHHhhCCCceEEEeCCCCHH-HHHHHHHHhh--cCCCCEEEEc
Q psy15610 108 EALTLVFVETK---KGADQLEDFLHHHGYPVTSIHGDRTQK-EREEALRRFR--SGETPILVAT 165 (237)
Q Consensus 108 ~~~~iIF~~t~---~~~~~l~~~L~~~~~~~~~~h~~~~~~-~r~~~~~~f~--~g~~~vlv~T 165 (237)
+...++.+... +....+...+...+..+..+..+++.. .-...++... .+.++++|..
T Consensus 24 g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ 87 (167)
T PF00106_consen 24 GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINN 87 (167)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEE
T ss_pred CceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45555555554 556667677776777788888765543 3344444443 4678888875
No 378
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=25.32 E-value=1.1e+02 Score=21.35 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=28.8
Q ss_pred HHHHHHhh-CCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 123 QLEDFLHH-HGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 123 ~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
..+++|++ .|+.+..+..+ +.+.+..+.+.+++|+++.+|.|..
T Consensus 35 gTa~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 35 TTGLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred hHHHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 44555665 67777666211 1123467899999999998888754
No 379
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=24.88 E-value=3.5e+02 Score=21.35 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=33.6
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCceE---EEeCCCCHHHHHHHHHHhhcCCCCEE-EEcC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYPVT---SIHGDRTQKEREEALRRFRSGETPIL-VATA 166 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~---~~h~~~~~~~r~~~~~~f~~g~~~vl-v~T~ 166 (237)
++.++++++... .-+.+.+.|.+.|+.+. +|.....+.........+.++.++++ +++.
T Consensus 117 ~~~~vL~~rg~~-~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~ 179 (240)
T PRK09189 117 PTARLLYLAGRP-RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSR 179 (240)
T ss_pred CCCcEEEeccCc-ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCH
Confidence 445666666544 44788899988877643 34332222223345567777776644 4443
No 380
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=24.45 E-value=2.3e+02 Score=19.01 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=32.3
Q ss_pred cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 117 TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 117 t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
+.+.+..+..+|..+++.+..+.=+++++.|....+...
T Consensus 15 ~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~ 53 (92)
T cd03030 15 IKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVP 53 (92)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcC
Confidence 456788889999999999999998899998887766653
No 381
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=23.95 E-value=3e+02 Score=23.60 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCceEEEEee-cccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhh
Q psy15610 107 DEALTLVFVE-TKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFR 155 (237)
Q Consensus 107 ~~~~~iIF~~-t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 155 (237)
+..+++|||. .-..+..++..|...|+.+..+.||+..- +......+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4678999995 55677888889998999999999998764 333444443
No 382
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=23.85 E-value=4.3e+02 Score=21.98 Aligned_cols=104 Identities=10% Similarity=0.024 Sum_probs=55.9
Q ss_pred ccccceeEEeecccchhhHHHHhhhcCCCceeecCCc--chhh-HHHHhh-hhhhccC--CceEEEEeecccchHHHHHH
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDR--TQKE-REEAQQ-YTLISCD--EALTLVFVETKKGADQLEDF 127 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~~--~~~~iIF~~t~~~~~~l~~~ 127 (237)
..+.++++.--|-.-...+.+.+...+++...-.... .... -..... ..-.... ..-++|+++.....+.+.+.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~ 83 (286)
T TIGR01019 4 DKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEA 83 (286)
T ss_pred cCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHH
Confidence 3456778887787777788888888787743322111 1100 000000 0001111 35677777776666666665
Q ss_pred HhhCCCceE-EEeCCCCHHHHHHHHHHhhcCC
Q psy15610 128 LHHHGYPVT-SIHGDRTQKEREEALRRFRSGE 158 (237)
Q Consensus 128 L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~ 158 (237)
.. .|++.. ++.++.+....+++.+.-++..
T Consensus 84 ~~-~Gvk~avIis~Gf~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 84 ID-AGIELIVCITEGIPVHDMLKVKRYMEESG 114 (286)
T ss_pred HH-CCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 54 666544 6667777664455555555443
No 383
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.61 E-value=99 Score=26.50 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 107 DEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
+..+++++|.+...+...+..|...|+. +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 4567899999988888889999988885 778888874
No 384
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=23.56 E-value=1.8e+02 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=23.7
Q ss_pred CceEEEEeeccc-chHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 108 EALTLVFVETKK-GADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 108 ~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
..++||||.+.. .+..+.-.|...|+. +..+.|+++
T Consensus 87 d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 87 DKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 567899998654 244455566667765 677777753
No 385
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=23.30 E-value=1.2e+02 Score=20.92 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCceEEEe--CCCCHHHHHHHHHHhhcCCCCEEEEcCc
Q psy15610 123 QLEDFLHHHGYPVTSIH--GDRTQKEREEALRRFRSGETPILVATAV 167 (237)
Q Consensus 123 ~l~~~L~~~~~~~~~~h--~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 167 (237)
..+++|.+.|+.+..+. .+.+......+.+.+++++++.+|.|..
T Consensus 34 gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~ 80 (116)
T cd01423 34 GTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPS 80 (116)
T ss_pred HHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCC
Confidence 55666667677665542 2211112256788889999999988754
No 386
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=23.16 E-value=4.2e+02 Score=21.66 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=39.4
Q ss_pred ceEEEEeecccchHHHHHHHhhC--CCceEEEe-CCCCHHHHHHHHHHhhcCCCCEEEE
Q psy15610 109 ALTLVFVETKKGADQLEDFLHHH--GYPVTSIH-GDRTQKEREEALRRFRSGETPILVA 164 (237)
Q Consensus 109 ~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~~h-~~~~~~~r~~~~~~f~~g~~~vlv~ 164 (237)
.++-.+-.+...+++.+..+++. +..+...| |-.++++.+.++++...-..++|+.
T Consensus 109 ~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~V 167 (253)
T COG1922 109 KRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLV 167 (253)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEE
Confidence 44445555566777788888776 34665555 8788888888999998877776654
No 387
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=23.00 E-value=1e+02 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHhhcCCCCEEEEcCcc
Q psy15610 143 TQKEREEALRRFRSGETPILVATAVA 168 (237)
Q Consensus 143 ~~~~r~~~~~~f~~g~~~vlv~T~~~ 168 (237)
+.++|+.+++.+++|.++++|+||-+
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHa 244 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSA 244 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCC
Confidence 36889999999999999988888764
No 388
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=22.78 E-value=1.8e+02 Score=17.18 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=33.2
Q ss_pred EEEEe-ecccchHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEE
Q psy15610 111 TLVFV-ETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILV 163 (237)
Q Consensus 111 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 163 (237)
+++|+ +.-..|+.+..+|.+.++.+..+.-...++.+....+........+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 34444 556689999999999998888777666665444433333333444444
No 389
>KOG3424|consensus
Probab=22.78 E-value=2.2e+02 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=25.8
Q ss_pred HHHHhhCCCceEEEeCCCC----HHHHHHHHHHhhcCC
Q psy15610 125 EDFLHHHGYPVTSIHGDRT----QKEREEALRRFRSGE 158 (237)
Q Consensus 125 ~~~L~~~~~~~~~~h~~~~----~~~r~~~~~~f~~g~ 158 (237)
..+|....+.+.++|-+++ .+-|+++.++++...
T Consensus 15 NrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt~~ 52 (132)
T KOG3424|consen 15 NRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKTTP 52 (132)
T ss_pred hhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcCCc
Confidence 3455667889999998876 466888888888743
No 390
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=22.67 E-value=5.6e+02 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=21.0
Q ss_pred ceEEEEeecccc-----------hHHHHHHHh-hCCCceEEEeCCCCHHH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLH-HHGYPVTSIHGDRTQKE 146 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~-~~~~~~~~~h~~~~~~~ 146 (237)
.+++|+++|.+. +-.++++++ ..|..+.++-.+++..-
T Consensus 202 ~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A 251 (458)
T TIGR01041 202 ERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYC 251 (458)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHH
Confidence 456666665442 223466666 46666666666655433
No 391
>KOG0025|consensus
Probab=22.34 E-value=4.8e+02 Score=22.07 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=52.6
Q ss_pred cceeEEeecccchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCCceEEEEeecccchHHHHHHHhhCCCceE
Q psy15610 57 ALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDEALTLVFVETKKGADQLEDFLHHHGYPVT 136 (237)
Q Consensus 57 ~~~i~f~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~ 136 (237)
...|-..-.+++.+++.+.|...|-.-.+-..+......... .......+.-+-|-.-+.+.+++++|.+-| ..
T Consensus 186 iktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~----~~~~~~prLalNcVGGksa~~iar~L~~Gg--tm 259 (354)
T KOG0025|consen 186 IKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKF----KGDNPRPRLALNCVGGKSATEIARYLERGG--TM 259 (354)
T ss_pred cceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhh----hccCCCceEEEeccCchhHHHHHHHHhcCc--eE
Confidence 456777888888888888888877665555444443332211 123334455677888888999999997543 34
Q ss_pred EEeCCCCH
Q psy15610 137 SIHGDRTQ 144 (237)
Q Consensus 137 ~~h~~~~~ 144 (237)
+-+|+|+.
T Consensus 260 vTYGGMSk 267 (354)
T KOG0025|consen 260 VTYGGMSK 267 (354)
T ss_pred EEecCccC
Confidence 44566653
No 392
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=22.09 E-value=1.7e+02 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.4
Q ss_pred cCCceEEEEeecccchHHHHHHHhhCCCc-eEEEeCCCC
Q psy15610 106 CDEALTLVFVETKKGADQLEDFLHHHGYP-VTSIHGDRT 143 (237)
Q Consensus 106 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 143 (237)
.+..++++||.+-..+-...-.|+..|+. +..|.|++.
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~ 259 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWG 259 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHH
Confidence 34678999999987777777777777885 888888753
No 393
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=22.01 E-value=5.2e+02 Score=24.11 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=48.6
Q ss_pred ceEEEEeeccc-----chHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHhhcCCCCEEEEcCccccccCCCCCcEEEEe
Q psy15610 109 ALTLVFVETKK-----GADQLEDFLHHHGYPVTSIHGDRTQKEREEALRRFRSGETPILVATAVAARGLDIPHVKHVINF 183 (237)
Q Consensus 109 ~~~iIF~~t~~-----~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gvdl~~~~~Vi~~ 183 (237)
-+.++-|.+-- ....+++.|++.|+++.+.|.+.+.- .-..+..+++++|..+...++.+....++-+
T Consensus 507 mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev-------~s~~~~aDIIVtt~~La~~i~i~~~~~VIgl 579 (602)
T PRK09548 507 VRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDY-------KGKLETIDIIVCSKHLANEIEFGEGKFVLGV 579 (602)
T ss_pred cEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhC-------cccCCCCCEEEEcccchhhhccCCCceEEEE
Confidence 45667776643 46678999999999988888865441 1122356899999777666665443444544
Q ss_pred cCCCCHHHHH
Q psy15610 184 DLPSDVEEYV 193 (237)
Q Consensus 184 ~~p~s~~~~~ 193 (237)
..--+.+++.
T Consensus 580 ~N~i~~dei~ 589 (602)
T PRK09548 580 QNMLNPNSFG 589 (602)
T ss_pred ecCCChHHHH
Confidence 3333444443
No 394
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=21.98 E-value=2.1e+02 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=25.6
Q ss_pred CCceEEEEeeccc-chHHHHHHHhhCCC-ceEEEeCCCC
Q psy15610 107 DEALTLVFVETKK-GADQLEDFLHHHGY-PVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~-~~~~~h~~~~ 143 (237)
+..++||||.+.. .+..+.-.|...|+ ++.++.|+++
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 3568889987653 34455566777787 4888998864
No 395
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=21.84 E-value=1.5e+02 Score=25.41 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=32.1
Q ss_pred cchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhhhhccCC--ceEEEEeeccc
Q psy15610 67 KGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYTLISCDE--ALTLVFVETKK 119 (237)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iIF~~t~~ 119 (237)
...+++.++|...++.+...+++.+...+-.+.-+.....++ ..+++|+.+..
T Consensus 135 ~~l~~~k~~L~~~g~~v~i~~~~~r~~~~gqVLGC~~~~~~~~~~d~~l~vg~G~ 189 (347)
T COG1736 135 HLLEEVKEILEGRGYEVVIGRGQTRPAYPGQVLGCNFSVLEGVDADAVLYVGSGR 189 (347)
T ss_pred hHHHHHHHHhhcCCeEEEEeCCCCcccCcceeeccccccCCccccceEEEEcCCc
Confidence 338899999999999888888877644433333333332222 34555555544
No 396
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=21.77 E-value=1.7e+02 Score=18.94 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.0
Q ss_pred CceEEEEeecccchHHHHHHHhhCC
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHG 132 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~ 132 (237)
.++++|++.+.+.|+.....+...|
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 3678889999999998888886654
No 397
>KOG1529|consensus
Probab=21.70 E-value=2.1e+02 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=33.2
Q ss_pred CceEEEEeecccchHHHHHHHhhCCCceEEEeCCCCH
Q psy15610 108 EALTLVFVETKKGADQLEDFLHHHGYPVTSIHGDRTQ 144 (237)
Q Consensus 108 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~ 144 (237)
..++++=|.+--.+..++-.+...|..+.+|.|++..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g~~~~lYdGS~~E 272 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSGPDAKLYDGSWTE 272 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcCCCcceecccHHH
Confidence 6789999999999999999999999999999998765
No 398
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=21.63 E-value=1.1e+02 Score=30.42 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=29.4
Q ss_pred ccccceeEEeecccchhhHHHHhhh-cCCCceeecCCcchhh
Q psy15610 54 GDEALTLVFVETKKGADQLEDFLHH-HGYPVTSIHGDRTQKE 94 (237)
Q Consensus 54 ~~~~~~i~f~~t~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 94 (237)
+...+.+.+|+|.++.++++.|+.. ++.++..+..+.+..+
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP 299 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP 299 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC
Confidence 3455799999999999999999975 3445555544444443
No 399
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=21.54 E-value=4.1e+02 Score=21.01 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=18.9
Q ss_pred ceeEEeecccchhhHHHHhhhcCCCceee
Q psy15610 58 LTLVFVETKKGADQLEDFLHHHGYPVTSI 86 (237)
Q Consensus 58 ~~i~f~~t~~~~~~~~~~l~~~~~~~~~~ 86 (237)
.+++..++..-...+++.|...|..+...
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~ 40 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFN 40 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 45566666655678888888876554433
No 400
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=21.20 E-value=1.5e+02 Score=20.83 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCceEEEEeecccc---------hHHHHHHHhh---CCCceEEEeCCCC
Q psy15610 107 DEALTLVFVETKKG---------ADQLEDFLHH---HGYPVTSIHGDRT 143 (237)
Q Consensus 107 ~~~~~iIF~~t~~~---------~~~l~~~L~~---~~~~~~~~h~~~~ 143 (237)
+...++||+.+... +..+.+.|.. .+.++.++.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 45789999987764 5566666665 4567889999863
No 401
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=4.6e+02 Score=21.37 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhhcCCCCEEEE-cCccccccCCCCCcEEEEecC--CCCHHHHHHhhcccc
Q psy15610 143 TQKEREEALRRFRSGETPILVA-TAVAARGLDIPHVKHVINFDL--PSDVEEYVHRIGRTG 200 (237)
Q Consensus 143 ~~~~r~~~~~~f~~g~~~vlv~-T~~~~~Gvdl~~~~~Vi~~~~--p~s~~~~~Q~~GR~~ 200 (237)
+..++..+.++-+-|-.-|-++ |++--. .+|++|-.+- +.+..-|...+.|+-
T Consensus 165 p~~e~iAv~EA~klgIPVvAlvDTn~dpd-----~VD~~IP~Ndda~rsi~Li~~~lA~ai 220 (252)
T COG0052 165 PRKEKIAVKEANKLGIPVVALVDTNCDPD-----GVDYVIPGNDDAIRSIALIYWLLARAI 220 (252)
T ss_pred CcHhHHHHHHHHHcCCCEEEEecCCCCCc-----cCceeecCCChHHHHHHHHHHHHHHHH
Confidence 5566777777766665555444 555433 3555664332 335555555554443
No 402
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=20.58 E-value=2.9e+02 Score=19.21 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=30.0
Q ss_pred hhhHHHHhhhcCCCceeecCCcchhhHHHHhh-hhhhccCCceEEEEeecccchHHHHHH
Q psy15610 69 ADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQ-YTLISCDEALTLVFVETKKGADQLEDF 127 (237)
Q Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iIF~~t~~~~~~l~~~ 127 (237)
.+++.+.....|..+..+--....-....+.. ......-..++++||.|-..+-.+..+
T Consensus 46 ~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 46 SAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHH
Confidence 34567777888887766654433333333322 222333456899999998766555443
No 403
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.51 E-value=3.3e+02 Score=21.75 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=32.7
Q ss_pred cccceeEEeecc-----------cchhhHHHHhhhcCCCceeecCCcchhhHHHHhhhh
Q psy15610 55 DEALTLVFVETK-----------KGADQLEDFLHHHGYPVTSIHGDRTQKEREEAQQYT 102 (237)
Q Consensus 55 ~~~~~i~f~~t~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (237)
+.+.++|+.+.. .+++.+.+.|...||.+.....-........+..+.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~ 65 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFA 65 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH
Confidence 455667777653 358899999999999987766555555555554443
No 404
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=20.29 E-value=6.4e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=20.3
Q ss_pred ceEEEEeecccc-----------hHHHHHHHh-hCCCceEEEeCCCCHH
Q psy15610 109 ALTLVFVETKKG-----------ADQLEDFLH-HHGYPVTSIHGDRTQK 145 (237)
Q Consensus 109 ~~~iIF~~t~~~-----------~~~l~~~L~-~~~~~~~~~h~~~~~~ 145 (237)
.++++|++|.+. +-.+++++. ..|..+.++-.+++..
T Consensus 211 ~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 211 ERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred ceEEEEEECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 456666666543 223466666 4566666665555543
No 405
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=20.04 E-value=63 Score=16.89 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=8.6
Q ss_pred cCCCCEEEEcCc
Q psy15610 156 SGETPILVATAV 167 (237)
Q Consensus 156 ~g~~~vlv~T~~ 167 (237)
.|.++|.|+|.=
T Consensus 2 ~g~LqI~ISTnG 13 (30)
T PF14824_consen 2 RGPLQIAISTNG 13 (30)
T ss_dssp -TTEEEEEEESS
T ss_pred CCCeEEEEECCC
Confidence 577888998853
Done!